1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Ohnishi, S.
Paakkonen, K.
Tochio, N.
Tomizawa, T.
Koshiba, S.
Inoue, M.
Guntert, P.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)
10.2210/pdb2dmv/pdb
pdb_00002dmv
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
4720.034
Itchy homolog E3 ubiquitin protein ligase
6.3.2.-
WW domain
1
man
polymer
Itch, Atrophin-1-interacting protein 4, AIP4, NFE2-associated polypeptide 1, NAPP1
no
no
GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG
GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG
A
hso002000508.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
ITCH
9606
Homo sapiens
Cell free synthesis
PLASMID
P050620-31
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-10-24
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2006-04-24
REL
Information from residual dipolar couplings was used in the structural calculation.
target function, structures with the lowest energy, structures with the least restraint violations
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
2D_15N_IPAP_HSQC
120mM
7.0
ambient
298
K
torsion angle dynamics
1
lowest energy
1.4mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT;
0.02% NaN3; 10% D2O, 90% H2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F.
processing
NMRPipe
20030801
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.965
Guntert, P.
structure solution
CYANA
2.1
Guntert, P.
refinement
CYANA
2.1
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
LEU
8
n
8
LEU
8
A
PRO
9
n
9
PRO
9
A
PRO
10
n
10
PRO
10
A
GLY
11
n
11
GLY
11
A
TRP
12
n
12
TRP
12
A
GLU
13
n
13
GLU
13
A
GLN
14
n
14
GLN
14
A
ARG
15
n
15
ARG
15
A
VAL
16
n
16
VAL
16
A
ASP
17
n
17
ASP
17
A
GLN
18
n
18
GLN
18
A
HIS
19
n
19
HIS
19
A
GLY
20
n
20
GLY
20
A
ARG
21
n
21
ARG
21
A
VAL
22
n
22
VAL
22
A
TYR
23
n
23
TYR
23
A
TYR
24
n
24
TYR
24
A
VAL
25
n
25
VAL
25
A
ASP
26
n
26
ASP
26
A
HIS
27
n
27
HIS
27
A
VAL
28
n
28
VAL
28
A
GLU
29
n
29
GLU
29
A
LYS
30
n
30
LYS
30
A
ARG
31
n
31
ARG
31
A
THR
32
n
32
THR
32
A
THR
33
n
33
THR
33
A
TRP
34
n
34
TRP
34
A
ASP
35
n
35
ASP
35
A
ARG
36
n
36
ARG
36
A
PRO
37
n
37
PRO
37
A
SER
38
n
38
SER
38
A
GLY
39
n
39
GLY
39
A
PRO
40
n
40
PRO
40
A
SER
41
n
41
SER
41
A
SER
42
n
42
SER
42
A
GLY
43
n
43
GLY
43
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ARG
15
A
N
ARG
15
A
O
TYR
23
A
O
TYR
23
A
N
TYR
24
A
N
TYR
24
A
O
THR
33
A
O
THR
33
1
A
SER
6
-162.01
118.80
2
A
PRO
37
-69.66
-178.06
2
A
SER
42
-173.30
114.22
5
A
PRO
37
-69.77
83.05
5
A
SER
38
-112.07
51.01
5
A
SER
42
-171.23
141.10
6
A
ASP
17
-66.83
-176.48
7
A
PRO
37
-69.73
78.95
8
A
SER
6
-95.80
38.54
8
A
PRO
37
-69.78
83.09
8
A
PRO
40
-69.75
-173.77
9
A
SER
41
-117.14
-73.93
10
A
SER
5
-105.01
71.51
10
A
PRO
40
-69.86
91.91
11
A
ASP
17
-56.88
175.58
11
A
PRO
40
-69.79
84.03
13
A
SER
6
-104.60
-73.75
13
A
PRO
40
-69.64
94.84
14
A
SER
38
-94.96
57.40
15
A
PRO
37
-69.74
79.55
16
A
PRO
40
-69.76
-174.48
17
A
SER
5
-99.46
49.11
17
A
PRO
37
-69.77
97.46
18
A
PRO
40
-69.87
-171.26
19
A
ASP
17
-56.85
176.44
19
A
PRO
40
-69.84
79.84
20
A
SER
38
-160.84
119.46
20
A
PRO
40
-69.78
-174.94
Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch)
1
N
N
LIGASE
WW domain, three stranded antiparallel beta sheet, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Ligase
ITCH_HUMAN
UNP
1
328
Q96J02
328
357
2DMV
8
37
Q96J02
A
1
8
37
1
cloning artifact
GLY
1
2DMV
A
Q96J02
UNP
1
1
cloning artifact
SER
2
2DMV
A
Q96J02
UNP
2
1
cloning artifact
SER
3
2DMV
A
Q96J02
UNP
3
1
cloning artifact
GLY
4
2DMV
A
Q96J02
UNP
4
1
cloning artifact
SER
5
2DMV
A
Q96J02
UNP
5
1
cloning artifact
SER
6
2DMV
A
Q96J02
UNP
6
1
cloning artifact
GLY
7
2DMV
A
Q96J02
UNP
7
1
cloning artifact
SER
38
2DMV
A
Q96J02
UNP
38
1
cloning artifact
GLY
39
2DMV
A
Q96J02
UNP
39
1
cloning artifact
PRO
40
2DMV
A
Q96J02
UNP
40
1
cloning artifact
SER
41
2DMV
A
Q96J02
UNP
41
1
cloning artifact
SER
42
2DMV
A
Q96J02
UNP
42
1
cloning artifact
GLY
43
2DMV
A
Q96J02
UNP
43
3
anti-parallel
anti-parallel
A
TRP
12
A
TRP
12
A
VAL
16
A
VAL
16
A
VAL
22
A
VAL
22
A
ASP
26
A
ASP
26
A
THR
32
A
THR
32
A
THR
33
A
THR
33