1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Ohnishi, S. Paakkonen, K. Tochio, N. Tomizawa, T. Koshiba, S. Inoue, M. Guntert, P. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch) 10.2210/pdb2dmv/pdb pdb_00002dmv 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 4720.034 Itchy homolog E3 ubiquitin protein ligase 6.3.2.- WW domain 1 man polymer Itch, Atrophin-1-interacting protein 4, AIP4, NFE2-associated polypeptide 1, NAPP1 no no GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG GSSGSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGPSSG A hso002000508.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis ITCH 9606 Homo sapiens Cell free synthesis PLASMID P050620-31 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-10-24 1 1 2008-04-30 1 2 2011-07-13 1 3 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2006-04-24 REL Information from residual dipolar couplings was used in the structural calculation. target function, structures with the lowest energy, structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 2D_15N_IPAP_HSQC 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.4mM protein U-15N, 13C; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D2O, 90% H2O 90% H2O/10% D2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20030801 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.965 Guntert, P. structure solution CYANA 2.1 Guntert, P. refinement CYANA 2.1 800 Bruker AVANCE GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A LEU 8 n 8 LEU 8 A PRO 9 n 9 PRO 9 A PRO 10 n 10 PRO 10 A GLY 11 n 11 GLY 11 A TRP 12 n 12 TRP 12 A GLU 13 n 13 GLU 13 A GLN 14 n 14 GLN 14 A ARG 15 n 15 ARG 15 A VAL 16 n 16 VAL 16 A ASP 17 n 17 ASP 17 A GLN 18 n 18 GLN 18 A HIS 19 n 19 HIS 19 A GLY 20 n 20 GLY 20 A ARG 21 n 21 ARG 21 A VAL 22 n 22 VAL 22 A TYR 23 n 23 TYR 23 A TYR 24 n 24 TYR 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A HIS 27 n 27 HIS 27 A VAL 28 n 28 VAL 28 A GLU 29 n 29 GLU 29 A LYS 30 n 30 LYS 30 A ARG 31 n 31 ARG 31 A THR 32 n 32 THR 32 A THR 33 n 33 THR 33 A TRP 34 n 34 TRP 34 A ASP 35 n 35 ASP 35 A ARG 36 n 36 ARG 36 A PRO 37 n 37 PRO 37 A SER 38 n 38 SER 38 A GLY 39 n 39 GLY 39 A PRO 40 n 40 PRO 40 A SER 41 n 41 SER 41 A SER 42 n 42 SER 42 A GLY 43 n 43 GLY 43 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ARG 15 A N ARG 15 A O TYR 23 A O TYR 23 A N TYR 24 A N TYR 24 A O THR 33 A O THR 33 1 A SER 6 -162.01 118.80 2 A PRO 37 -69.66 -178.06 2 A SER 42 -173.30 114.22 5 A PRO 37 -69.77 83.05 5 A SER 38 -112.07 51.01 5 A SER 42 -171.23 141.10 6 A ASP 17 -66.83 -176.48 7 A PRO 37 -69.73 78.95 8 A SER 6 -95.80 38.54 8 A PRO 37 -69.78 83.09 8 A PRO 40 -69.75 -173.77 9 A SER 41 -117.14 -73.93 10 A SER 5 -105.01 71.51 10 A PRO 40 -69.86 91.91 11 A ASP 17 -56.88 175.58 11 A PRO 40 -69.79 84.03 13 A SER 6 -104.60 -73.75 13 A PRO 40 -69.64 94.84 14 A SER 38 -94.96 57.40 15 A PRO 37 -69.74 79.55 16 A PRO 40 -69.76 -174.48 17 A SER 5 -99.46 49.11 17 A PRO 37 -69.77 97.46 18 A PRO 40 -69.87 -171.26 19 A ASP 17 -56.85 176.44 19 A PRO 40 -69.84 79.84 20 A SER 38 -160.84 119.46 20 A PRO 40 -69.78 -174.94 Solution structure of the second ww domain of Itchy homolog E3 ubiquitin protein ligase (Itch) 1 N N LIGASE WW domain, three stranded antiparallel beta sheet, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, Ligase ITCH_HUMAN UNP 1 328 Q96J02 328 357 2DMV 8 37 Q96J02 A 1 8 37 1 cloning artifact GLY 1 2DMV A Q96J02 UNP 1 1 cloning artifact SER 2 2DMV A Q96J02 UNP 2 1 cloning artifact SER 3 2DMV A Q96J02 UNP 3 1 cloning artifact GLY 4 2DMV A Q96J02 UNP 4 1 cloning artifact SER 5 2DMV A Q96J02 UNP 5 1 cloning artifact SER 6 2DMV A Q96J02 UNP 6 1 cloning artifact GLY 7 2DMV A Q96J02 UNP 7 1 cloning artifact SER 38 2DMV A Q96J02 UNP 38 1 cloning artifact GLY 39 2DMV A Q96J02 UNP 39 1 cloning artifact PRO 40 2DMV A Q96J02 UNP 40 1 cloning artifact SER 41 2DMV A Q96J02 UNP 41 1 cloning artifact SER 42 2DMV A Q96J02 UNP 42 1 cloning artifact GLY 43 2DMV A Q96J02 UNP 43 3 anti-parallel anti-parallel A TRP 12 A TRP 12 A VAL 16 A VAL 16 A VAL 22 A VAL 22 A ASP 26 A ASP 26 A THR 32 A THR 32 A THR 33 A THR 33