1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Kobayashi, N.
Tomizawa, T.
Koshiba, S.
Inoue, M.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of J-domain from the DnaJ homolog, human Tid1 protein
10.2210/pdb2dn9/pdb
pdb_00002dn9
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
8782.624
DnaJ homolog subfamily A member 3
J-domain
1
man
polymer
Tumorous imaginal discs protein Tid56 homolog, DnaJ protein Tid-1, hTid-1
no
no
GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG
GSSGSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGPSSG
A
hsi002014013.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free synthesis
DNAJA3
9606
Homo sapiens
Cell free synthesis
PLASMID
P050516-13
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-10-25
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2006-04-25
REL
target function, structures with the lowest energy
100
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
120mM
7.0
ambient
296
K
torsion angle dynamics, restrained molecular dynamics
1
lowest energy
1.06mM J-domain U-13C, 15N; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT;
0.02% NaN3; 10% D2O, 90% H2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F.
processing
NMRPipe
20031121
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9742
Guntert, P.
structure solution
CYANA
2.0.17
Guntert, P.
refinement
CYANA
2.0.17
800
Bruker
AVANCE
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
ASP
8
n
8
ASP
8
A
TYR
9
n
9
TYR
9
A
TYR
10
n
10
TYR
10
A
GLN
11
n
11
GLN
11
A
ILE
12
n
12
ILE
12
A
LEU
13
n
13
LEU
13
A
GLY
14
n
14
GLY
14
A
VAL
15
n
15
VAL
15
A
PRO
16
n
16
PRO
16
A
ARG
17
n
17
ARG
17
A
ASN
18
n
18
ASN
18
A
ALA
19
n
19
ALA
19
A
SER
20
n
20
SER
20
A
GLN
21
n
21
GLN
21
A
LYS
22
n
22
LYS
22
A
GLU
23
n
23
GLU
23
A
ILE
24
n
24
ILE
24
A
LYS
25
n
25
LYS
25
A
LYS
26
n
26
LYS
26
A
ALA
27
n
27
ALA
27
A
TYR
28
n
28
TYR
28
A
TYR
29
n
29
TYR
29
A
GLN
30
n
30
GLN
30
A
LEU
31
n
31
LEU
31
A
ALA
32
n
32
ALA
32
A
LYS
33
n
33
LYS
33
A
LYS
34
n
34
LYS
34
A
TYR
35
n
35
TYR
35
A
HIS
36
n
36
HIS
36
A
PRO
37
n
37
PRO
37
A
ASP
38
n
38
ASP
38
A
THR
39
n
39
THR
39
A
ASN
40
n
40
ASN
40
A
LYS
41
n
41
LYS
41
A
ASP
42
n
42
ASP
42
A
ASP
43
n
43
ASP
43
A
PRO
44
n
44
PRO
44
A
LYS
45
n
45
LYS
45
A
ALA
46
n
46
ALA
46
A
LYS
47
n
47
LYS
47
A
GLU
48
n
48
GLU
48
A
LYS
49
n
49
LYS
49
A
PHE
50
n
50
PHE
50
A
SER
51
n
51
SER
51
A
GLN
52
n
52
GLN
52
A
LEU
53
n
53
LEU
53
A
ALA
54
n
54
ALA
54
A
GLU
55
n
55
GLU
55
A
ALA
56
n
56
ALA
56
A
TYR
57
n
57
TYR
57
A
GLU
58
n
58
GLU
58
A
VAL
59
n
59
VAL
59
A
LEU
60
n
60
LEU
60
A
SER
61
n
61
SER
61
A
ASP
62
n
62
ASP
62
A
GLU
63
n
63
GLU
63
A
VAL
64
n
64
VAL
64
A
LYS
65
n
65
LYS
65
A
ARG
66
n
66
ARG
66
A
LYS
67
n
67
LYS
67
A
GLN
68
n
68
GLN
68
A
TYR
69
n
69
TYR
69
A
ASP
70
n
70
ASP
70
A
ALA
71
n
71
ALA
71
A
TYR
72
n
72
TYR
72
A
GLY
73
n
73
GLY
73
A
SER
74
n
74
SER
74
A
GLY
75
n
75
GLY
75
A
PRO
76
n
76
PRO
76
A
SER
77
n
77
SER
77
A
SER
78
n
78
SER
78
A
GLY
79
n
79
GLY
79
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
ASP
42
-89.37
32.59
1
A
LYS
47
-38.56
-35.74
1
A
SER
61
-38.92
-28.56
1
A
SER
77
-52.42
107.90
1
A
SER
78
-34.50
142.94
2
A
SER
6
-65.97
89.64
2
A
ASN
40
-111.98
59.14
3
A
ASP
8
-68.17
97.81
3
A
ASN
18
-104.14
43.28
3
A
TYR
35
-101.86
43.67
3
A
ASN
40
-105.19
77.03
3
A
SER
78
-93.35
-70.11
4
A
SER
2
-66.59
81.78
4
A
ASN
18
-98.64
42.21
4
A
GLN
21
-38.46
-38.48
4
A
ASN
40
-112.27
72.61
4
A
GLU
58
-37.36
-38.82
4
A
PRO
76
-69.82
91.86
5
A
ASN
18
-98.64
39.94
5
A
TYR
35
-98.16
37.77
5
A
SER
78
-106.00
-70.50
6
A
GLN
21
-39.54
-35.04
6
A
PRO
76
-69.81
95.23
7
A
ASN
18
-99.60
36.35
7
A
GLN
21
-37.29
-30.55
7
A
TYR
35
-96.75
44.08
7
A
ASN
40
-109.89
78.74
8
A
ALA
32
-39.96
-34.85
9
A
ASN
18
-101.64
44.98
9
A
TYR
35
-103.67
47.25
9
A
ASN
40
-97.97
52.51
9
A
ASP
42
-84.51
30.93
9
A
VAL
64
-67.27
-70.04
10
A
ASN
18
-97.18
40.62
10
A
LYS
41
-50.14
87.61
10
A
SER
77
-41.32
96.68
11
A
SER
6
-46.93
150.11
11
A
ASN
18
-97.72
34.01
11
A
LYS
41
-78.10
-71.68
11
A
ASP
43
-32.67
96.04
12
A
GLN
21
-35.85
-35.91
12
A
TYR
35
-113.29
53.41
12
A
ASN
40
-114.13
59.11
12
A
ASP
43
-32.89
96.18
13
A
ASP
8
-66.48
97.52
13
A
ASN
40
-112.67
50.37
13
A
ASP
43
-32.96
96.29
13
A
GLU
58
-37.47
-37.15
13
A
SER
61
-39.70
-32.85
14
A
ASN
18
-106.45
42.51
14
A
TYR
35
-106.84
47.63
14
A
ASP
43
-33.40
96.59
15
A
ASN
18
-99.50
37.43
15
A
TYR
35
-109.01
42.02
15
A
PRO
37
-69.76
2.75
15
A
ASN
40
-116.20
52.45
15
A
ASP
43
-33.27
96.48
16
A
ASN
18
-94.18
34.37
16
A
ASP
43
-32.62
95.99
16
A
SER
77
-67.02
94.37
17
A
SER
5
39.87
40.16
17
A
SER
6
-96.83
45.62
17
A
SER
61
-37.94
-38.96
18
A
SER
5
-97.92
42.76
18
A
TYR
35
-94.11
34.72
18
A
PRO
76
-69.78
1.21
18
A
SER
77
-42.14
108.89
19
A
ASP
8
-53.05
105.69
19
A
ASN
18
-96.19
39.27
19
A
GLN
21
-37.92
-39.41
19
A
THR
39
-131.25
-38.92
19
A
ALA
46
-35.10
-38.46
19
A
GLU
58
-38.91
-29.01
19
A
PRO
76
-69.71
91.97
20
A
SER
5
39.40
37.65
20
A
ASN
40
-104.36
68.93
20
A
LYS
41
-69.67
-70.05
20
A
ASP
43
-32.66
96.10
Solution structure of J-domain from the DnaJ homolog, human Tid1 protein
1
N
N
A
ASP
8
A
ASP
8
HELX_P
A
GLY
14
A
GLY
14
1
1
7
A
SER
20
A
SER
20
HELX_P
A
TYR
35
A
TYR
35
1
2
16
A
LYS
45
A
LYS
45
HELX_P
A
ASP
62
A
ASP
62
1
3
18
A
ASP
62
A
ASP
62
HELX_P
A
TYR
72
A
TYR
72
1
4
11
APOPTOSIS, CHAPERONE
DnaJ, J-domain, Tid1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, APOPTOSIS, CHAPERONE
DNJA3_HUMAN
UNP
1
93
Q96EY1
93
159
2DN9
8
73
Q96EY1
A
1
8
73
1
cloning artifact
GLY
1
2DN9
A
Q96EY1
UNP
1
1
cloning artifact
SER
2
2DN9
A
Q96EY1
UNP
2
1
cloning artifact
SER
3
2DN9
A
Q96EY1
UNP
3
1
cloning artifact
GLY
4
2DN9
A
Q96EY1
UNP
4
1
cloning artifact
SER
5
2DN9
A
Q96EY1
UNP
5
1
cloning artifact
SER
6
2DN9
A
Q96EY1
UNP
6
1
cloning artifact
GLY
7
2DN9
A
Q96EY1
UNP
7
1
cloning artifact
SER
74
2DN9
A
Q96EY1
UNP
74
1
cloning artifact
GLY
75
2DN9
A
Q96EY1
UNP
75
1
cloning artifact
PRO
76
2DN9
A
Q96EY1
UNP
76
1
cloning artifact
SER
77
2DN9
A
Q96EY1
UNP
77
1
cloning artifact
SER
78
2DN9
A
Q96EY1
UNP
78
1
cloning artifact
GLY
79
2DN9
A
Q96EY1
UNP
79