0.017240
0.000000
0.000000
0.000000
0.017240
0.000000
0.000000
0.000000
0.002318
0.00000
0.00000
0.00000
Tomita, K.
Ishitani, R.
Fukai, S.
Nureki, O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
58.004
58.004
431.498
C10 H14 N5 O7 P
347.221
y
ADENOSINE-5'-MONOPHOSPHATE
RNA linking
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C9 H14 N3 O8 P
323.197
y
CYTIDINE-5'-MONOPHOSPHATE
RNA linking
C9 H16 N3 O14 P3
483.156
CYTIDINE-5'-TRIPHOSPHATE
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H14 N5 O8 P
363.221
y
GUANOSINE-5'-MONOPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C9 H13 N2 O9 P
324.181
y
URIDINE-5'-MONOPHOSPHATE
RNA linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
O
N
2
N
P
N
3
N
O
N
4
N
O
N
5
N
O
N
6
N
C
N
7
R
C
N
8
N
O
N
9
S
C
N
10
N
O
N
11
R
C
N
12
N
O
N
13
R
C
Y
14
N
N
Y
15
N
C
Y
16
N
N
Y
17
N
C
Y
18
N
C
N
19
N
N
Y
20
N
N
Y
21
N
C
Y
22
N
N
Y
23
N
C
N
24
N
H
N
25
N
H
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
N
N
39
S
C
N
40
N
C
N
41
N
O
N
42
N
C
N
43
N
O
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
O
N
112
N
P
N
113
N
O
N
114
N
O
N
115
N
O
N
116
N
C
N
117
R
C
N
118
N
O
N
119
S
C
N
120
N
O
N
121
R
C
N
122
N
O
N
123
R
C
N
124
N
N
N
125
N
C
N
126
N
O
N
127
N
N
N
128
N
C
N
129
N
N
N
130
N
C
N
131
N
C
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
N
N
147
N
C
N
148
N
N
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
N
N
154
R
C
N
155
R
C
N
156
N
O
N
157
S
C
N
158
R
C
N
159
N
O
N
160
N
O
N
161
N
C
N
162
N
O
N
163
S
P
N
164
N
O
N
165
N
O
N
166
N
O
N
167
R
P
N
168
N
O
N
169
N
O
N
170
N
O
N
171
N
P
N
172
N
O
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
R
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
S
N
197
N
O
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
O
N
206
N
P
N
207
N
O
N
208
N
O
N
209
N
O
N
210
N
C
N
211
R
C
N
212
N
O
N
213
S
C
N
214
N
O
N
215
R
C
N
216
N
O
N
217
R
C
Y
218
N
N
Y
219
N
C
Y
220
N
N
Y
221
N
C
N
222
N
C
N
223
N
O
N
224
N
N
N
225
N
C
N
226
N
N
N
227
N
N
Y
228
N
C
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
N
N
244
S
C
N
245
N
C
N
246
N
O
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
O
N
251
N
N
N
252
N
O
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
N
N
264
S
C
N
265
N
C
N
266
N
O
N
267
N
C
N
268
N
C
N
269
N
C
N
270
N
O
N
271
N
O
N
272
N
O
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
H
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
N
N
283
N
C
N
284
N
C
N
285
N
O
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
N
N
293
S
C
N
294
N
C
N
295
N
O
N
296
N
C
Y
297
N
C
Y
298
N
N
Y
299
N
C
Y
300
N
C
Y
301
N
N
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
O
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
S
C
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
N
N
339
S
C
N
340
N
C
N
341
N
O
N
342
N
C
N
343
N
C
N
344
N
C
N
345
N
C
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
N
N
361
S
C
N
362
N
C
N
363
N
O
N
364
N
C
N
365
N
C
N
366
N
C
N
367
N
C
N
368
N
N
N
369
N
O
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
N
N
386
S
C
N
387
N
C
N
388
N
O
N
389
N
C
N
390
N
C
N
391
N
S
N
392
N
C
N
393
N
O
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
MG
N
406
N
N
N
407
S
C
N
408
N
C
N
409
N
O
N
410
N
C
Y
411
N
C
Y
412
N
C
Y
413
N
C
Y
414
N
C
Y
415
N
C
Y
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
429
N
N
N
430
S
C
N
431
N
C
N
432
N
O
N
433
N
C
N
434
N
C
N
435
N
C
N
436
N
O
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
N
451
N
O
N
452
N
O
N
453
N
H
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
S
N
461
N
O
N
462
N
O
N
463
N
O
N
464
N
O
N
465
N
N
N
466
S
C
N
467
N
C
N
468
N
O
N
469
R
C
N
470
N
O
N
471
N
C
N
472
N
O
N
473
N
H
N
474
N
H
N
475
N
H
N
476
N
H
N
477
N
H
N
478
N
H
N
479
N
H
N
480
N
H
N
481
N
H
N
482
N
N
N
483
S
C
N
484
N
C
N
485
N
O
N
486
N
C
Y
487
N
C
Y
488
N
C
Y
489
N
C
Y
490
N
N
Y
491
N
C
Y
492
N
C
Y
493
N
C
Y
494
N
C
Y
495
N
C
N
496
N
O
N
497
N
H
N
498
N
H
N
499
N
H
N
500
N
H
N
501
N
H
N
502
N
H
N
503
N
H
N
504
N
H
N
505
N
H
N
506
N
H
N
507
N
H
N
508
N
H
N
509
N
N
N
510
S
C
N
511
N
C
N
512
N
O
N
513
N
C
Y
514
N
C
Y
515
N
C
Y
516
N
C
Y
517
N
C
Y
518
N
C
Y
519
N
C
N
520
N
O
N
521
N
O
N
522
N
H
N
523
N
H
N
524
N
H
N
525
N
H
N
526
N
H
N
527
N
H
N
528
N
H
N
529
N
H
N
530
N
H
N
531
N
H
N
532
N
H
N
533
N
O
N
534
N
P
N
535
N
O
N
536
N
O
N
537
N
O
N
538
N
C
N
539
R
C
N
540
N
O
N
541
S
C
N
542
N
O
N
543
R
C
N
544
N
O
N
545
R
C
N
546
N
N
N
547
N
C
N
548
N
O
N
549
N
N
N
550
N
C
N
551
N
O
N
552
N
C
N
553
N
C
N
554
N
H
N
555
N
H
N
556
N
H
N
557
N
H
N
558
N
H
N
559
N
H
N
560
N
H
N
561
N
H
N
562
N
H
N
563
N
H
N
564
N
H
N
565
N
H
N
566
N
H
N
567
N
N
N
568
S
C
N
569
N
C
N
570
N
O
N
571
N
C
N
572
N
C
N
573
N
C
N
574
N
O
N
575
N
H
N
576
N
H
N
577
N
H
N
578
N
H
N
579
N
H
N
580
N
H
N
581
N
H
N
582
N
H
N
583
N
H
N
584
N
H
N
585
N
H
N
1
N
sing
N
2
N
sing
N
3
N
doub
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
Y
25
N
sing
Y
26
N
sing
Y
27
N
doub
N
28
N
sing
Y
29
N
sing
Y
30
N
sing
Y
31
N
doub
N
32
N
sing
Y
33
N
doub
N
34
N
sing
N
35
N
sing
Y
36
N
sing
Y
37
N
doub
N
38
N
sing
Y
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
doub
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
doub
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
doub
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
doub
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
doub
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
doub
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
doub
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
Y
228
N
sing
Y
229
N
sing
Y
230
N
doub
N
231
N
sing
Y
232
N
sing
N
233
N
sing
Y
234
N
doub
N
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
doub
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
doub
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
doub
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
doub
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
Y
301
N
sing
Y
302
N
doub
Y
303
N
doub
N
304
N
sing
Y
305
N
sing
N
306
N
sing
Y
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
sing
N
404
N
doub
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
Y
409
N
doub
Y
410
N
sing
Y
411
N
sing
N
412
N
sing
Y
413
N
doub
N
414
N
sing
Y
415
N
doub
N
416
N
sing
Y
417
N
sing
N
418
N
sing
N
419
N
sing
N
420
N
sing
N
421
N
sing
N
422
N
sing
N
423
N
sing
N
424
N
sing
N
425
N
sing
N
426
N
sing
N
427
N
doub
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
sing
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
doub
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
N
450
N
sing
N
451
N
doub
N
452
N
doub
N
453
N
sing
N
454
N
sing
N
455
N
sing
N
456
N
sing
N
457
N
sing
N
458
N
sing
N
459
N
sing
N
460
N
sing
N
461
N
doub
N
462
N
sing
N
463
N
sing
N
464
N
sing
N
465
N
sing
N
466
N
sing
N
467
N
sing
N
468
N
sing
N
469
N
sing
N
470
N
sing
N
471
N
sing
N
472
N
sing
N
473
N
sing
N
474
N
sing
N
475
N
sing
N
476
N
sing
N
477
N
doub
N
478
N
sing
N
479
N
sing
N
480
N
sing
N
481
N
sing
Y
482
N
doub
Y
483
N
sing
Y
484
N
sing
N
485
N
sing
Y
486
N
doub
Y
487
N
sing
Y
488
N
sing
N
489
N
sing
Y
490
N
sing
Y
491
N
doub
N
492
N
sing
Y
493
N
doub
N
494
N
sing
Y
495
N
sing
N
496
N
sing
N
497
N
sing
N
498
N
sing
N
499
N
sing
N
500
N
sing
N
501
N
sing
N
502
N
sing
N
503
N
sing
N
504
N
sing
N
505
N
doub
N
506
N
sing
N
507
N
sing
N
508
N
sing
N
509
N
sing
Y
510
N
doub
Y
511
N
sing
Y
512
N
sing
N
513
N
sing
Y
514
N
doub
N
515
N
sing
Y
516
N
doub
N
517
N
sing
Y
518
N
sing
N
519
N
sing
N
520
N
sing
N
521
N
sing
N
522
N
sing
N
523
N
sing
N
524
N
sing
N
525
N
doub
N
526
N
sing
N
527
N
sing
N
528
N
sing
N
529
N
sing
N
530
N
sing
N
531
N
sing
N
532
N
sing
N
533
N
sing
N
534
N
sing
N
535
N
sing
N
536
N
sing
N
537
N
sing
N
538
N
sing
N
539
N
sing
N
540
N
sing
N
541
N
sing
N
542
N
sing
N
543
N
sing
N
544
N
sing
N
545
N
sing
N
546
N
sing
N
547
N
sing
N
548
N
sing
N
549
N
doub
N
550
N
sing
N
551
N
sing
N
552
N
sing
N
553
N
doub
N
554
N
sing
N
555
N
doub
N
556
N
sing
N
557
N
sing
N
558
N
sing
N
559
N
sing
N
560
N
sing
N
561
N
sing
N
562
N
sing
N
563
N
sing
N
564
N
doub
N
565
N
sing
N
566
N
sing
N
567
N
sing
N
568
N
sing
N
569
N
sing
N
570
N
sing
N
571
N
sing
N
572
N
sing
N
573
N
sing
N
574
N
sing
N
575
N
sing
UK
Nature
NATUAS
0006
0028-0836
443
956
960
10.1038/nature05204
17051158
Complete crystallographic analysis of the dynamics of CCA sequence addition
2006
10.2210/pdb2dvi/pdb
pdb_00002dvi
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-05-17
ADSC QUANTUM 315
Si 111 CHANNEL
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
BL41XU
SPring-8
1
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
10904.503
tRNA (34-MER)
1
syn
polymer
51469.137
CCA-adding enzyme
2.7.7.25, 2.7.7.21
1
man
polymer
96.063
SULFATE ION
1
syn
non-polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
483.156
CYTIDINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
174
nat
water
tRNA nucleotidyltransferase, tRNA adenylyl-/cytidylyl-transferase, tRNA CCA-pyrophosphorylase, tRNA-NT
no
no
GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACC
GGCCCGGGGCGGUUCGAUUCCGCCCUGGGCCACC
B
polyribonucleotide
no
no
MKVEEILEKALELVIPDEEEVRKGREAEEELRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGL
EIGKAVLDSYEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGI
YGAEYKVRGFSGYLCELLIVFYGSFLETVKNARRWTRRTVIDVAKGEVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVH
LCREFMEAPSLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPLRSAF
KASEEFCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLSRNRAFRPFIENGRWWAFEMRKFTTPEEGVRSYASTHWHTL
GKNVGESIREYFEIISGEKLFKEPVTAELCEMMGVKD
MKVEEILEKALELVIPDEEEVRKGREAEEELRRRLDELGVEYVFVGSYARNTWLKGSLEIDVFLLFPEEFSKEELRERGL
EIGKAVLDSYEIRYAEHPYVHGVVKGVEVDVVPCYKLKEPKNIKSAVDRTPFHHKWLEGRIKGKENEVRLLKGFLKANGI
YGAEYKVRGFSGYLCELLIVFYGSFLETVKNARRWTRRTVIDVAKGEVRKGEEFFVVDPVDEKRNVAANLSLDNLARFVH
LCREFMEAPSLGFFKPKHPLEIEPERLRKIVEERGTAVFAVKFRKPDIVDDNLYPQLERASRKIFEFLERENFMPLRSAF
KASEEFCYLLFECQIKEISRVFRRMGPQFEDERNVKKFLSRNRAFRPFIENGRWWAFEMRKFTTPEEGVRSYASTHWHTL
GKNVGESIREYFEIISGEKLFKEPVTAELCEMMGVKD
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Archaeoglobus
Escherichia
Escherichia coli
sample
2234
Archaeoglobus fulgidus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET22b
1
2.91
57.71
VAPOR DIFFUSION
7.5
50mM HEPES, 20% PEG 3550, 0.2M Tri-Lithium citrate, 80mM (NH4)2SO4, pH 7.5, VAPOR DIFFUSION, temperature 293K
293
HEPES
1
PEG 3550
1
Tri-lithium citrate
1
ammonium sulphate
1
water
1
HEPES
2
PEG 3550
2
Tri-lithium citrate
2
ammonium sulphate
2
water
2
8.360
1
19
B
1
B
31
-2.144
B_G1:C31_B
1
-4.369
-0.167
0.560
0.018
8.751
1
19
B
2
B
30
0.661
B_G2:C30_B
2
-14.212
-0.342
0.236
-0.178
9.252
1
19
B
3
B
29
-0.039
B_C3:G29_B
3
-18.823
0.439
-0.102
-0.251
4.924
1
19
B
4
B
28
3.163
B_C4:G28_B
4
-11.458
0.312
-0.270
-0.033
4.488
1
19
B
5
B
27
2.676
B_C5:G27_B
5
-5.605
0.345
0.067
-0.222
-4.441
1
28
B
6
B
26
13.167
B_G6:U26_B
6
-7.131
-2.104
-0.636
-0.020
0.584
1
19
B
7
B
25
2.579
B_G7:C25_B
7
-6.760
-1.028
0.105
-0.280
-6.774
1
19
B
8
B
24
0.233
B_G8:C24_B
8
-15.123
0.829
-0.114
-0.171
-10.894
1
19
B
9
B
23
5.682
B_G9:C23_B
9
-11.460
-0.535
-0.124
-0.109
-1.729
1
19
B
10
B
22
-1.081
B_C10:G22_B
10
-5.748
0.458
0.204
-0.491
-2.886
1
19
B
11
B
21
-4.456
B_G11:C21_B
11
-10.164
0.173
0.144
-0.245
-11.593
1
19
B
12
B
20
1.918
B_G12:C20_B
12
-14.655
-0.180
-0.086
-0.199
-5.986
4
24
B
13
B
17
-85.112
B_U13:A17_B
13
5.311
4.079
-0.125
-2.055
3.010
33.875
B
B
1
2
6.926
B
B
31
30
3.191
4.026
-0.114
-1.402
BB_G1G2:C30C31_BB
1
-0.931
1.601
33.630
-3.022
0.054
3.261
36.697
B
B
2
3
1.380
B
B
30
29
3.307
0.869
-0.258
-1.602
BB_G2C3:G29C30_BB
2
1.109
-1.761
36.670
-2.664
0.563
2.570
29.960
B
B
3
4
19.342
B
B
29
28
3.337
9.818
-0.357
-1.879
BB_C3C4:G28G29_BB
3
-1.470
2.897
28.302
-5.519
0.409
2.786
30.654
B
B
4
5
14.248
B
B
28
27
3.300
7.440
-0.234
-1.779
BB_C4C5:G27G28_BB
4
-3.954
7.572
29.500
-4.757
-0.297
2.277
21.051
B
B
5
6
28.082
B
B
27
26
3.526
9.764
1.429
-2.345
BB_C5G6:U26G27_BB
5
4.999
-14.377
17.995
-10.354
-1.897
3.216
31.196
B
B
6
7
1.838
B
B
26
25
3.236
0.984
-0.507
-1.885
BB_G6G7:C25U26_BB
6
-5.031
9.395
30.783
-3.691
-0.007
2.990
41.863
B
B
7
8
13.720
B
B
25
24
3.486
9.711
-0.057
-1.768
BB_G7G8:C24C25_BB
7
3.504
-4.951
40.626
-3.496
0.449
2.124
26.906
B
B
8
9
23.393
B
B
24
23
3.178
10.586
0.594
-2.179
BB_G8G9:C23C24_BB
8
2.348
-5.188
24.661
-6.985
-0.767
3.201
32.161
B
B
9
10
-1.274
B
B
23
22
3.148
-0.706
0.386
-2.529
BB_G9C10:G22C23_BB
9
0.055
-0.099
32.154
-4.443
-0.687
2.522
24.165
B
B
10
11
14.838
B
B
22
21
3.104
6.145
-0.993
-1.976
BB_C10G11:C21G22_BB
10
-0.340
0.821
23.379
-6.432
2.277
3.166
34.229
B
B
11
12
10.451
B
B
21
20
3.498
6.116
0.509
-1.746
BB_G11G12:C20C21_BB
11
2.150
-3.674
33.628
-3.957
-0.516
3.184
81.092
B
B
12
13
-1.261
B
B
20
17
3.187
-1.640
-1.856
-2.012
BB_G12U13:A17C20_BB
12
1.921
-1.478
81.060
-1.506
1.476
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-11-14
1
1
2008-04-30
1
2
2011-07-13
1
3
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2006-07-31
REL
REL
SO4
SULFATE ION
MG
MAGNESIUM ION
CTP
CYTIDINE-5'-TRIPHOSPHATE
HOH
water
2DR9
PDB
experimental model
SO4
601
3
SO4
SO4
601
A
MG2
602
4
MG
MG
602
A
CTP
504
5
CTP
CTP
504
A
TIP
7
6
HOH
HOH
35
B
TIP
9
6
HOH
HOH
36
B
TIP
10
6
HOH
HOH
37
B
TIP
12
6
HOH
HOH
38
B
TIP
15
6
HOH
HOH
39
B
TIP
18
6
HOH
HOH
40
B
TIP
20
6
HOH
HOH
41
B
TIP
21
6
HOH
HOH
42
B
TIP
28
6
HOH
HOH
43
B
TIP
39
6
HOH
HOH
44
B
TIP
42
6
HOH
HOH
45
B
TIP
44
6
HOH
HOH
46
B
TIP
46
6
HOH
HOH
47
B
TIP
54
6
HOH
HOH
48
B
TIP
61
6
HOH
HOH
49
B
TIP
81
6
HOH
HOH
50
B
TIP
90
6
HOH
HOH
51
B
TIP
113
6
HOH
HOH
52
B
TIP
114
6
HOH
HOH
53
B
TIP
127
6
HOH
HOH
54
B
TIP
148
6
HOH
HOH
55
B
TIP
180
6
HOH
HOH
56
B
TIP
182
6
HOH
HOH
57
B
TIP
183
6
HOH
HOH
58
B
TIP
189
6
HOH
HOH
59
B
TIP
191
6
HOH
HOH
60
B
TIP
200
6
HOH
HOH
61
B
TIP
202
6
HOH
HOH
62
B
TIP
204
6
HOH
HOH
63
B
TIP
211
6
HOH
HOH
64
B
TIP
212
6
HOH
HOH
65
B
TIP
213
6
HOH
HOH
66
B
TIP
214
6
HOH
HOH
67
B
TIP
223
6
HOH
HOH
68
B
TIP
232
6
HOH
HOH
69
B
TIP
244
6
HOH
HOH
70
B
TIP
257
6
HOH
HOH
71
B
TIP
260
6
HOH
HOH
72
B
TIP
1
6
HOH
HOH
603
A
TIP
3
6
HOH
HOH
604
A
TIP
4
6
HOH
HOH
605
A
TIP
5
6
HOH
HOH
606
A
TIP
6
6
HOH
HOH
607
A
TIP
8
6
HOH
HOH
608
A
TIP
13
6
HOH
HOH
609
A
TIP
14
6
HOH
HOH
610
A
TIP
16
6
HOH
HOH
611
A
TIP
17
6
HOH
HOH
612
A
TIP
19
6
HOH
HOH
613
A
TIP
22
6
HOH
HOH
614
A
TIP
24
6
HOH
HOH
615
A
TIP
25
6
HOH
HOH
616
A
TIP
26
6
HOH
HOH
617
A
TIP
27
6
HOH
HOH
618
A
TIP
29
6
HOH
HOH
619
A
TIP
30
6
HOH
HOH
620
A
TIP
31
6
HOH
HOH
621
A
TIP
32
6
HOH
HOH
622
A
TIP
33
6
HOH
HOH
623
A
TIP
34
6
HOH
HOH
624
A
TIP
35
6
HOH
HOH
625
A
TIP
36
6
HOH
HOH
626
A
TIP
37
6
HOH
HOH
627
A
TIP
38
6
HOH
HOH
628
A
TIP
40
6
HOH
HOH
629
A
TIP
41
6
HOH
HOH
630
A
TIP
43
6
HOH
HOH
631
A
TIP
45
6
HOH
HOH
632
A
TIP
47
6
HOH
HOH
633
A
TIP
48
6
HOH
HOH
634
A
TIP
49
6
HOH
HOH
635
A
TIP
50
6
HOH
HOH
636
A
TIP
51
6
HOH
HOH
637
A
TIP
52
6
HOH
HOH
638
A
TIP
53
6
HOH
HOH
639
A
TIP
55
6
HOH
HOH
640
A
TIP
56
6
HOH
HOH
641
A
TIP
58
6
HOH
HOH
642
A
TIP
60
6
HOH
HOH
643
A
TIP
62
6
HOH
HOH
644
A
TIP
65
6
HOH
HOH
645
A
TIP
66
6
HOH
HOH
646
A
TIP
67
6
HOH
HOH
647
A
TIP
70
6
HOH
HOH
648
A
TIP
76
6
HOH
HOH
649
A
TIP
79
6
HOH
HOH
650
A
TIP
82
6
HOH
HOH
651
A
TIP
83
6
HOH
HOH
652
A
TIP
84
6
HOH
HOH
653
A
TIP
85
6
HOH
HOH
654
A
TIP
86
6
HOH
HOH
655
A
TIP
87
6
HOH
HOH
656
A
TIP
89
6
HOH
HOH
657
A
TIP
91
6
HOH
HOH
658
A
TIP
93
6
HOH
HOH
659
A
TIP
94
6
HOH
HOH
660
A
TIP
96
6
HOH
HOH
661
A
TIP
98
6
HOH
HOH
662
A
TIP
99
6
HOH
HOH
663
A
TIP
100
6
HOH
HOH
664
A
TIP
104
6
HOH
HOH
665
A
TIP
106
6
HOH
HOH
666
A
TIP
107
6
HOH
HOH
667
A
TIP
108
6
HOH
HOH
668
A
TIP
109
6
HOH
HOH
669
A
TIP
115
6
HOH
HOH
670
A
TIP
118
6
HOH
HOH
671
A
TIP
125
6
HOH
HOH
672
A
TIP
130
6
HOH
HOH
673
A
TIP
136
6
HOH
HOH
674
A
TIP
140
6
HOH
HOH
675
A
TIP
143
6
HOH
HOH
676
A
TIP
144
6
HOH
HOH
677
A
TIP
146
6
HOH
HOH
678
A
TIP
149
6
HOH
HOH
679
A
TIP
154
6
HOH
HOH
680
A
TIP
156
6
HOH
HOH
681
A
TIP
160
6
HOH
HOH
682
A
TIP
165
6
HOH
HOH
683
A
TIP
166
6
HOH
HOH
684
A
TIP
170
6
HOH
HOH
685
A
TIP
172
6
HOH
HOH
686
A
TIP
173
6
HOH
HOH
687
A
TIP
175
6
HOH
HOH
688
A
TIP
176
6
HOH
HOH
689
A
TIP
177
6
HOH
HOH
690
A
TIP
178
6
HOH
HOH
691
A
TIP
179
6
HOH
HOH
692
A
TIP
181
6
HOH
HOH
693
A
TIP
184
6
HOH
HOH
694
A
TIP
185
6
HOH
HOH
695
A
TIP
186
6
HOH
HOH
696
A
TIP
188
6
HOH
HOH
697
A
TIP
192
6
HOH
HOH
698
A
TIP
195
6
HOH
HOH
699
A
TIP
196
6
HOH
HOH
700
A
TIP
197
6
HOH
HOH
701
A
TIP
199
6
HOH
HOH
702
A
TIP
201
6
HOH
HOH
703
A
TIP
203
6
HOH
HOH
704
A
TIP
207
6
HOH
HOH
705
A
TIP
210
6
HOH
HOH
706
A
TIP
215
6
HOH
HOH
707
A
TIP
216
6
HOH
HOH
708
A
TIP
220
6
HOH
HOH
709
A
TIP
221
6
HOH
HOH
710
A
TIP
222
6
HOH
HOH
711
A
TIP
224
6
HOH
HOH
712
A
TIP
226
6
HOH
HOH
713
A
TIP
228
6
HOH
HOH
714
A
TIP
229
6
HOH
HOH
715
A
TIP
231
6
HOH
HOH
716
A
TIP
233
6
HOH
HOH
717
A
TIP
234
6
HOH
HOH
718
A
TIP
235
6
HOH
HOH
719
A
TIP
236
6
HOH
HOH
720
A
TIP
237
6
HOH
HOH
721
A
TIP
240
6
HOH
HOH
722
A
TIP
242
6
HOH
HOH
723
A
TIP
243
6
HOH
HOH
724
A
TIP
245
6
HOH
HOH
725
A
TIP
247
6
HOH
HOH
726
A
TIP
250
6
HOH
HOH
727
A
TIP
251
6
HOH
HOH
728
A
TIP
252
6
HOH
HOH
729
A
TIP
254
6
HOH
HOH
730
A
TIP
255
6
HOH
HOH
731
A
TIP
256
6
HOH
HOH
732
A
TIP
258
6
HOH
HOH
733
A
TIP
262
6
HOH
HOH
734
A
TIP
263
6
HOH
HOH
735
A
TIP
265
6
HOH
HOH
736
A
TIP
267
6
HOH
HOH
737
A
TIP
268
6
HOH
HOH
738
A
GUA
1
n
1
G
1
B
GUA
2
n
2
G
2
B
CYT
3
n
3
C
3
B
CYT
4
n
4
C
4
B
CYT
5
n
5
C
5
B
GUA
6
n
6
G
6
B
GUA
7
n
7
G
7
B
GUA
8
n
8
G
8
B
GUA
9
n
9
G
9
B
CYT
10
n
10
C
10
B
GUA
11
n
11
G
11
B
GUA
12
n
12
G
12
B
URI
13
n
13
U
13
B
URI
14
n
14
U
14
B
CYT
15
n
15
C
15
B
GUA
16
n
16
G
16
B
ADE
17
n
17
A
17
B
URI
18
n
18
U
18
B
URI
19
n
19
U
19
B
CYT
20
n
20
C
20
B
CYT
21
n
21
C
21
B
GUA
22
n
22
G
22
B
CYT
23
n
23
C
23
B
CYT
24
n
24
C
24
B
CYT
25
n
25
C
25
B
URI
26
n
26
U
26
B
GUA
27
n
27
G
27
B
GUA
28
n
28
G
28
B
GUA
29
n
29
G
29
B
CYT
30
n
30
C
30
B
CYT
31
n
31
C
31
B
ADE
32
n
32
A
32
B
CYT
33
n
33
C
33
B
CYT
34
n
34
C
34
B
n
1
1
A
n
2
2
A
VAL
3
n
3
VAL
3
A
GLU
4
n
4
GLU
4
A
GLU
5
n
5
GLU
5
A
ILE
6
n
6
ILE
6
A
LEU
7
n
7
LEU
7
A
GLU
8
n
8
GLU
8
A
LYS
9
n
9
LYS
9
A
ALA
10
n
10
ALA
10
A
LEU
11
n
11
LEU
11
A
GLU
12
n
12
GLU
12
A
LEU
13
n
13
LEU
13
A
VAL
14
n
14
VAL
14
A
ILE
15
n
15
ILE
15
A
PRO
16
n
16
PRO
16
A
ASP
17
n
17
ASP
17
A
GLU
18
n
18
GLU
18
A
GLU
19
n
19
GLU
19
A
GLU
20
n
20
GLU
20
A
VAL
21
n
21
VAL
21
A
ARG
22
n
22
ARG
22
A
LYS
23
n
23
LYS
23
A
GLY
24
n
24
GLY
24
A
ARG
25
n
25
ARG
25
A
GLU
26
n
26
GLU
26
A
ALA
27
n
27
ALA
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
GLU
30
n
30
GLU
30
A
LEU
31
n
31
LEU
31
A
ARG
32
n
32
ARG
32
A
ARG
33
n
33
ARG
33
A
ARG
34
n
34
ARG
34
A
LEU
35
n
35
LEU
35
A
ASP
36
n
36
ASP
36
A
GLU
37
n
37
GLU
37
A
LEU
38
n
38
LEU
38
A
GLY
39
n
39
GLY
39
A
VAL
40
n
40
VAL
40
A
GLU
41
n
41
GLU
41
A
TYR
42
n
42
TYR
42
A
VAL
43
n
43
VAL
43
A
PHE
44
n
44
PHE
44
A
VAL
45
n
45
VAL
45
A
GLY
46
n
46
GLY
46
A
SER
47
n
47
SER
47
A
TYR
48
n
48
TYR
48
A
ALA
49
n
49
ALA
49
A
ARG
50
n
50
ARG
50
A
ASN
51
n
51
ASN
51
A
THR
52
n
52
THR
52
A
TRP
53
n
53
TRP
53
A
LEU
54
n
54
LEU
54
A
LYS
55
n
55
LYS
55
A
GLY
56
n
56
GLY
56
A
SER
57
n
57
SER
57
A
LEU
58
n
58
LEU
58
A
GLU
59
n
59
GLU
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
VAL
62
n
62
VAL
62
A
PHE
63
n
63
PHE
63
A
LEU
64
n
64
LEU
64
A
LEU
65
n
65
LEU
65
A
PHE
66
n
66
PHE
66
A
PRO
67
n
67
PRO
67
A
GLU
68
n
68
GLU
68
A
GLU
69
n
69
GLU
69
A
PHE
70
n
70
PHE
70
A
SER
71
n
71
SER
71
A
LYS
72
n
72
LYS
72
A
GLU
73
n
73
GLU
73
A
GLU
74
n
74
GLU
74
A
LEU
75
n
75
LEU
75
A
ARG
76
n
76
ARG
76
A
GLU
77
n
77
GLU
77
A
ARG
78
n
78
ARG
78
A
GLY
79
n
79
GLY
79
A
LEU
80
n
80
LEU
80
A
GLU
81
n
81
GLU
81
A
ILE
82
n
82
ILE
82
A
GLY
83
n
83
GLY
83
A
LYS
84
n
84
LYS
84
A
ALA
85
n
85
ALA
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
ASP
88
n
88
ASP
88
A
SER
89
n
89
SER
89
A
TYR
90
n
90
TYR
90
A
GLU
91
n
91
GLU
91
A
ILE
92
n
92
ILE
92
A
ARG
93
n
93
ARG
93
A
TYR
94
n
94
TYR
94
A
ALA
95
n
95
ALA
95
A
GLU
96
n
96
GLU
96
A
HIS
97
n
97
HIS
97
A
PRO
98
n
98
PRO
98
A
TYR
99
n
99
TYR
99
A
VAL
100
n
100
VAL
100
A
HIS
101
n
101
HIS
101
A
GLY
102
n
102
GLY
102
A
VAL
103
n
103
VAL
103
A
VAL
104
n
104
VAL
104
A
LYS
105
n
105
LYS
105
A
GLY
106
n
106
GLY
106
A
VAL
107
n
107
VAL
107
A
GLU
108
n
108
GLU
108
A
VAL
109
n
109
VAL
109
A
ASP
110
n
110
ASP
110
A
VAL
111
n
111
VAL
111
A
VAL
112
n
112
VAL
112
A
PRO
113
n
113
PRO
113
A
CYS
114
n
114
CYS
114
A
TYR
115
n
115
TYR
115
A
LYS
116
n
116
LYS
116
A
LEU
117
n
117
LEU
117
A
LYS
118
n
118
LYS
118
A
GLU
119
n
119
GLU
119
A
PRO
120
n
120
PRO
120
A
LYS
121
n
121
LYS
121
A
ASN
122
n
122
ASN
122
A
ILE
123
n
123
ILE
123
A
LYS
124
n
124
LYS
124
A
SER
125
n
125
SER
125
A
ALA
126
n
126
ALA
126
A
VAL
127
n
127
VAL
127
A
ASP
128
n
128
ASP
128
A
ARG
129
n
129
ARG
129
A
THR
130
n
130
THR
130
A
PRO
131
n
131
PRO
131
A
PHE
132
n
132
PHE
132
A
HIS
133
n
133
HIS
133
A
HIS
134
n
134
HIS
134
A
LYS
135
n
135
LYS
135
A
TRP
136
n
136
TRP
136
A
LEU
137
n
137
LEU
137
A
GLU
138
n
138
GLU
138
A
GLY
139
n
139
GLY
139
A
ARG
140
n
140
ARG
140
A
ILE
141
n
141
ILE
141
A
LYS
142
n
142
LYS
142
A
GLY
143
n
143
GLY
143
A
LYS
144
n
144
LYS
144
A
GLU
145
n
145
GLU
145
A
ASN
146
n
146
ASN
146
A
GLU
147
n
147
GLU
147
A
VAL
148
n
148
VAL
148
A
ARG
149
n
149
ARG
149
A
LEU
150
n
150
LEU
150
A
LEU
151
n
151
LEU
151
A
LYS
152
n
152
LYS
152
A
GLY
153
n
153
GLY
153
A
PHE
154
n
154
PHE
154
A
LEU
155
n
155
LEU
155
A
LYS
156
n
156
LYS
156
A
ALA
157
n
157
ALA
157
A
ASN
158
n
158
ASN
158
A
GLY
159
n
159
GLY
159
A
ILE
160
n
160
ILE
160
A
TYR
161
n
161
TYR
161
A
GLY
162
n
162
GLY
162
A
ALA
163
n
163
ALA
163
A
GLU
164
n
164
GLU
164
A
TYR
165
n
165
TYR
165
A
LYS
166
n
166
LYS
166
A
VAL
167
n
167
VAL
167
A
ARG
168
n
168
ARG
168
A
GLY
169
n
169
GLY
169
A
PHE
170
n
170
PHE
170
A
SER
171
n
171
SER
171
A
GLY
172
n
172
GLY
172
A
TYR
173
n
173
TYR
173
A
LEU
174
n
174
LEU
174
A
CYS
175
n
175
CYS
175
A
GLU
176
n
176
GLU
176
A
LEU
177
n
177
LEU
177
A
LEU
178
n
178
LEU
178
A
ILE
179
n
179
ILE
179
A
VAL
180
n
180
VAL
180
A
PHE
181
n
181
PHE
181
A
TYR
182
n
182
TYR
182
A
GLY
183
n
183
GLY
183
A
SER
184
n
184
SER
184
A
PHE
185
n
185
PHE
185
A
LEU
186
n
186
LEU
186
A
GLU
187
n
187
GLU
187
A
THR
188
n
188
THR
188
A
VAL
189
n
189
VAL
189
A
LYS
190
n
190
LYS
190
A
ASN
191
n
191
ASN
191
A
ALA
192
n
192
ALA
192
A
ARG
193
n
193
ARG
193
A
ARG
194
n
194
ARG
194
A
TRP
195
n
195
TRP
195
A
THR
196
n
196
THR
196
A
ARG
197
n
197
ARG
197
A
ARG
198
n
198
ARG
198
A
THR
199
n
199
THR
199
A
VAL
200
n
200
VAL
200
A
ILE
201
n
201
ILE
201
A
ASP
202
n
202
ASP
202
A
VAL
203
n
203
VAL
203
A
ALA
204
n
204
ALA
204
A
LYS
205
n
205
LYS
205
A
GLY
206
n
206
GLY
206
A
GLU
207
n
207
GLU
207
A
VAL
208
n
208
VAL
208
A
ARG
209
n
209
ARG
209
A
LYS
210
n
210
LYS
210
A
GLY
211
n
211
GLY
211
A
GLU
212
n
212
GLU
212
A
GLU
213
n
213
GLU
213
A
PHE
214
n
214
PHE
214
A
PHE
215
n
215
PHE
215
A
VAL
216
n
216
VAL
216
A
VAL
217
n
217
VAL
217
A
ASP
218
n
218
ASP
218
A
PRO
219
n
219
PRO
219
A
VAL
220
n
220
VAL
220
A
ASP
221
n
221
ASP
221
A
GLU
222
n
222
GLU
222
A
LYS
223
n
223
LYS
223
A
ARG
224
n
224
ARG
224
A
ASN
225
n
225
ASN
225
A
VAL
226
n
226
VAL
226
A
ALA
227
n
227
ALA
227
A
ALA
228
n
228
ALA
228
A
ASN
229
n
229
ASN
229
A
LEU
230
n
230
LEU
230
A
SER
231
n
231
SER
231
A
LEU
232
n
232
LEU
232
A
ASP
233
n
233
ASP
233
A
ASN
234
n
234
ASN
234
A
LEU
235
n
235
LEU
235
A
ALA
236
n
236
ALA
236
A
ARG
237
n
237
ARG
237
A
PHE
238
n
238
PHE
238
A
VAL
239
n
239
VAL
239
A
HIS
240
n
240
HIS
240
A
LEU
241
n
241
LEU
241
A
CYS
242
n
242
CYS
242
A
ARG
243
n
243
ARG
243
A
GLU
244
n
244
GLU
244
A
PHE
245
n
245
PHE
245
A
MET
246
n
246
MET
246
A
GLU
247
n
247
GLU
247
A
ALA
248
n
248
ALA
248
A
PRO
249
n
249
PRO
249
A
SER
250
n
250
SER
250
A
LEU
251
n
251
LEU
251
A
GLY
252
n
252
GLY
252
A
PHE
253
n
253
PHE
253
A
PHE
254
n
254
PHE
254
A
LYS
255
n
255
LYS
255
A
PRO
256
n
256
PRO
256
A
LYS
257
n
257
LYS
257
A
n
258
258
A
n
259
259
A
n
260
260
A
n
261
261
A
ILE
262
n
262
ILE
262
A
GLU
263
n
263
GLU
263
A
PRO
264
n
264
PRO
264
A
GLU
265
n
265
GLU
265
A
ARG
266
n
266
ARG
266
A
LEU
267
n
267
LEU
267
A
ARG
268
n
268
ARG
268
A
LYS
269
n
269
LYS
269
A
ILE
270
n
270
ILE
270
A
VAL
271
n
271
VAL
271
A
GLU
272
n
272
GLU
272
A
GLU
273
n
273
GLU
273
A
ARG
274
n
274
ARG
274
A
GLY
275
n
275
GLY
275
A
THR
276
n
276
THR
276
A
ALA
277
n
277
ALA
277
A
VAL
278
n
278
VAL
278
A
PHE
279
n
279
PHE
279
A
ALA
280
n
280
ALA
280
A
VAL
281
n
281
VAL
281
A
LYS
282
n
282
LYS
282
A
PHE
283
n
283
PHE
283
A
ARG
284
n
284
ARG
284
A
LYS
285
n
285
LYS
285
A
PRO
286
n
286
PRO
286
A
ASP
287
n
287
ASP
287
A
ILE
288
n
288
ILE
288
A
VAL
289
n
289
VAL
289
A
ASP
290
n
290
ASP
290
A
ASP
291
n
291
ASP
291
A
ASN
292
n
292
ASN
292
A
LEU
293
n
293
LEU
293
A
TYR
294
n
294
TYR
294
A
PRO
295
n
295
PRO
295
A
GLN
296
n
296
GLN
296
A
LEU
297
n
297
LEU
297
A
GLU
298
n
298
GLU
298
A
ARG
299
n
299
ARG
299
A
ALA
300
n
300
ALA
300
A
SER
301
n
301
SER
301
A
ARG
302
n
302
ARG
302
A
LYS
303
n
303
LYS
303
A
ILE
304
n
304
ILE
304
A
PHE
305
n
305
PHE
305
A
GLU
306
n
306
GLU
306
A
PHE
307
n
307
PHE
307
A
LEU
308
n
308
LEU
308
A
GLU
309
n
309
GLU
309
A
ARG
310
n
310
ARG
310
A
GLU
311
n
311
GLU
311
A
ASN
312
n
312
ASN
312
A
PHE
313
n
313
PHE
313
A
MET
314
n
314
MET
314
A
PRO
315
n
315
PRO
315
A
LEU
316
n
316
LEU
316
A
ARG
317
n
317
ARG
317
A
SER
318
n
318
SER
318
A
ALA
319
n
319
ALA
319
A
PHE
320
n
320
PHE
320
A
LYS
321
n
321
LYS
321
A
ALA
322
n
322
ALA
322
A
SER
323
n
323
SER
323
A
GLU
324
n
324
GLU
324
A
GLU
325
n
325
GLU
325
A
PHE
326
n
326
PHE
326
A
CYS
327
n
327
CYS
327
A
TYR
328
n
328
TYR
328
A
LEU
329
n
329
LEU
329
A
LEU
330
n
330
LEU
330
A
PHE
331
n
331
PHE
331
A
GLU
332
n
332
GLU
332
A
CYS
333
n
333
CYS
333
A
GLN
334
n
334
GLN
334
A
ILE
335
n
335
ILE
335
A
LYS
336
n
336
LYS
336
A
GLU
337
n
337
GLU
337
A
ILE
338
n
338
ILE
338
A
SER
339
n
339
SER
339
A
ARG
340
n
340
ARG
340
A
VAL
341
n
341
VAL
341
A
PHE
342
n
342
PHE
342
A
ARG
343
n
343
ARG
343
A
ARG
344
n
344
ARG
344
A
MET
345
n
345
MET
345
A
GLY
346
n
346
GLY
346
A
PRO
347
n
347
PRO
347
A
GLN
348
n
348
GLN
348
A
PHE
349
n
349
PHE
349
A
GLU
350
n
350
GLU
350
A
ASP
351
n
351
ASP
351
A
GLU
352
n
352
GLU
352
A
ARG
353
n
353
ARG
353
A
ASN
354
n
354
ASN
354
A
VAL
355
n
355
VAL
355
A
LYS
356
n
356
LYS
356
A
LYS
357
n
357
LYS
357
A
PHE
358
n
358
PHE
358
A
LEU
359
n
359
LEU
359
A
SER
360
n
360
SER
360
A
ARG
361
n
361
ARG
361
A
ASN
362
n
362
ASN
362
A
ARG
363
n
363
ARG
363
A
ALA
364
n
364
ALA
364
A
PHE
365
n
365
PHE
365
A
ARG
366
n
366
ARG
366
A
PRO
367
n
367
PRO
367
A
PHE
368
n
368
PHE
368
A
ILE
369
n
369
ILE
369
A
GLU
370
n
370
GLU
370
A
ASN
371
n
371
ASN
371
A
GLY
372
n
372
GLY
372
A
ARG
373
n
373
ARG
373
A
TRP
374
n
374
TRP
374
A
TRP
375
n
375
TRP
375
A
ALA
376
n
376
ALA
376
A
PHE
377
n
377
PHE
377
A
GLU
378
n
378
GLU
378
A
MET
379
n
379
MET
379
A
ARG
380
n
380
ARG
380
A
LYS
381
n
381
LYS
381
A
PHE
382
n
382
PHE
382
A
THR
383
n
383
THR
383
A
THR
384
n
384
THR
384
A
PRO
385
n
385
PRO
385
A
GLU
386
n
386
GLU
386
A
GLU
387
n
387
GLU
387
A
GLY
388
n
388
GLY
388
A
VAL
389
n
389
VAL
389
A
ARG
390
n
390
ARG
390
A
SER
391
n
391
SER
391
A
TYR
392
n
392
TYR
392
A
ALA
393
n
393
ALA
393
A
SER
394
n
394
SER
394
A
THR
395
n
395
THR
395
A
HIS
396
n
396
HIS
396
A
TRP
397
n
397
TRP
397
A
HIS
398
n
398
HIS
398
A
THR
399
n
399
THR
399
A
LEU
400
n
400
LEU
400
A
GLY
401
n
401
GLY
401
A
LYS
402
n
402
LYS
402
A
ASN
403
n
403
ASN
403
A
VAL
404
n
404
VAL
404
A
GLY
405
n
405
GLY
405
A
GLU
406
n
406
GLU
406
A
SER
407
n
407
SER
407
A
ILE
408
n
408
ILE
408
A
ARG
409
n
409
ARG
409
A
GLU
410
n
410
GLU
410
A
TYR
411
n
411
TYR
411
A
PHE
412
n
412
PHE
412
A
GLU
413
n
413
GLU
413
A
ILE
414
n
414
ILE
414
A
ILE
415
n
415
ILE
415
A
SER
416
n
416
SER
416
A
GLY
417
n
417
GLY
417
A
GLU
418
n
418
GLU
418
A
LYS
419
n
419
LYS
419
A
LEU
420
n
420
LEU
420
A
PHE
421
n
421
PHE
421
A
LYS
422
n
422
LYS
422
A
GLU
423
n
423
GLU
423
A
PRO
424
n
424
PRO
424
A
VAL
425
n
425
VAL
425
A
THR
426
n
426
THR
426
A
ALA
427
n
427
ALA
427
A
GLU
428
n
428
GLU
428
A
LEU
429
n
429
LEU
429
A
CYS
430
n
430
CYS
430
A
GLU
431
n
431
GLU
431
A
MET
432
n
432
MET
432
A
MET
433
n
433
MET
433
A
GLY
434
n
434
GLY
434
A
VAL
435
n
435
VAL
435
A
LYS
436
n
436
LYS
436
A
ASP
437
n
437
ASP
437
A
author_defined_assembly
2
dimeric
A
GLU
59
B
O
GLU
59
1_555
A
MG
602
D
MG
MG
1_555
A
ASP
61
B
OD2
ASP
61
1_555
81.3
A
GLU
59
B
O
GLU
59
1_555
A
MG
602
D
MG
MG
1_555
A
CTP
504
E
O1G
CTP
1_555
118.9
A
ASP
61
B
OD2
ASP
61
1_555
A
MG
602
D
MG
MG
1_555
A
CTP
504
E
O1G
CTP
1_555
126.7
A
GLU
59
B
O
GLU
59
1_555
A
MG
602
D
MG
MG
1_555
A
CTP
504
E
O1A
CTP
1_555
141.2
A
ASP
61
B
OD2
ASP
61
1_555
A
MG
602
D
MG
MG
1_555
A
CTP
504
E
O1A
CTP
1_555
61.2
A
CTP
504
E
O1G
CTP
1_555
A
MG
602
D
MG
MG
1_555
A
CTP
504
E
O1A
CTP
1_555
93.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
43
B
N
VAL
43
A
O
PHE
63
B
O
PHE
63
A
N
VAL
62
B
N
VAL
62
A
O
VAL
112
B
O
VAL
112
A
O
VAL
109
B
O
VAL
109
A
N
GLY
102
B
N
GLY
102
A
O
HIS
101
B
O
HIS
101
A
N
GLU
91
B
N
GLU
91
A
O
ARG
209
B
O
ARG
209
A
N
VAL
200
B
N
VAL
200
A
N
ILE
201
B
N
ILE
201
A
O
PHE
215
B
O
PHE
215
A
N
LEU
316
B
N
LEU
316
A
O
GLU
332
B
O
GLU
332
A
O
CYS
333
B
O
CYS
333
A
N
ALA
277
B
N
ALA
277
A
N
LYS
282
B
N
LYS
282
A
O
GLU
413
B
O
GLU
413
A
N
ARG
344
B
N
ARG
344
A
O
ALA
376
B
O
ALA
376
A
O
ARG
373
B
O
ARG
373
A
N
GLU
370
B
N
GLU
370
1
A
MET
1
B
MET
1
1
Y
1
A
LYS
2
B
LYS
2
1
Y
1
A
HIS
258
B
HIS
258
1
Y
1
A
PRO
259
B
PRO
259
1
Y
1
A
LEU
260
B
LEU
260
1
Y
1
A
GLU
261
B
GLU
261
1
Y
1
A
A
O
O
TYR
PHE
161
170
2.00
1
B
B
P
OP3
G
G
1
1
-0.081
0.012
1.607
1.526
N
1
A
A
O
O
PHE
GLY
365
434
2.06
1_555
7_555
1
A
GLU
4
-28.15
-52.37
1
A
GLU
96
-140.05
-70.91
1
A
GLU
119
67.19
109.76
1
A
PRO
249
-50.37
98.35
1
A
LEU
316
-92.35
-68.75
1
A
GLU
325
-93.71
-64.58
1
A
ARG
366
77.97
114.55
1
A
TYR
411
174.79
134.98
1
A
PRO
424
-72.66
36.73
protein_rep.param
protein.top
dna-rna_rep.param
dna-rna.top
water_rep.param
water.top
ion.param
ion.top
atp2.param
atp2.top
45.3
-0.38
0.00
0.00
-0.38
0.00
0.75
0.252
0.008
0.207
0.207
2.61
9.99
1083
22537
22537
4.8
96.2
RANDOM
1934818.03
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
2DR9
Engh & Huber
FLAT MODEL
41.8752
0.406663
0.38
0.29
5.00
0.36
0.26
2.61
9.99
174
4512
35
724
3579
0.006
1.2
20.4
1.00
1.37
1.50
2.31
2.00
2.15
2.00
3.33
2.50
0.296
0.023
0.239
2.76
164
3305
6
4.7
89.7
34.7
2.6
50
2DVI
23070
23070
0
0
1
96.1
2.6
2.64
95.8
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
MOLREP
Complex structure of CCA-adding enzyme, mini-DCC and CTP
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
6
N
N
6
N
N
A
VAL
3
B
VAL
3
HELX_P
A
ILE
15
B
ILE
15
1
1
13
A
ASP
17
B
ASP
17
HELX_P
A
GLY
39
B
GLY
39
1
2
23
A
GLY
46
B
GLY
46
HELX_P
A
ARG
50
B
ARG
50
1
3
5
A
SER
71
B
SER
71
HELX_P
A
LEU
87
B
LEU
87
1
4
17
A
ARG
129
B
ARG
129
HELX_P
A
LYS
142
B
LYS
142
1
5
14
A
LYS
144
B
LYS
144
HELX_P
A
ASN
158
B
ASN
158
1
6
15
A
SER
171
B
SER
171
HELX_P
A
GLY
183
B
GLY
183
1
7
13
A
SER
184
B
SER
184
HELX_P
A
ARG
193
B
ARG
193
1
8
10
A
SER
231
B
SER
231
HELX_P
A
ALA
248
B
ALA
248
1
9
18
A
SER
250
B
SER
250
HELX_P
A
LYS
255
B
LYS
255
5
10
6
A
GLU
263
B
GLU
263
HELX_P
A
GLY
275
B
GLY
275
1
11
13
A
VAL
289
B
VAL
289
HELX_P
A
GLU
311
B
GLU
311
1
12
23
A
ASP
351
B
ASP
351
HELX_P
A
ARG
361
B
ARG
361
1
13
11
A
THR
384
B
THR
384
HELX_P
A
HIS
396
B
HIS
396
1
14
13
A
TRP
397
B
TRP
397
HELX_P
A
LEU
400
B
LEU
400
5
15
4
A
GLY
401
B
GLY
401
HELX_P
A
TYR
411
B
TYR
411
1
16
11
A
SER
416
B
SER
416
HELX_P
A
PHE
421
B
PHE
421
1
17
6
A
VAL
425
B
VAL
425
HELX_P
A
GLY
434
B
GLY
434
1
18
10
metalc
2.787
A
GLU
59
B
O
GLU
59
1_555
A
MG
602
D
MG
MG
1_555
metalc
2.903
A
ASP
61
B
OD2
ASP
61
1_555
A
MG
602
D
MG
MG
1_555
metalc
2.607
A
CTP
504
E
O1G
CTP
1_555
A
MG
602
D
MG
MG
1_555
metalc
2.925
A
CTP
504
E
O1A
CTP
1_555
A
MG
602
D
MG
MG
1_555
hydrog
WATSON-CRICK
B
G
1
A
N1
G
1
1_555
B
C
31
A
N3
C
31
1_555
hydrog
WATSON-CRICK
B
G
1
A
N2
G
1
1_555
B
C
31
A
O2
C
31
1_555
hydrog
WATSON-CRICK
B
G
1
A
O6
G
1
1_555
B
C
31
A
N4
C
31
1_555
hydrog
WATSON-CRICK
B
G
2
A
N1
G
2
1_555
B
C
30
A
N3
C
30
1_555
hydrog
WATSON-CRICK
B
G
2
A
N2
G
2
1_555
B
C
30
A
O2
C
30
1_555
hydrog
WATSON-CRICK
B
G
2
A
O6
G
2
1_555
B
C
30
A
N4
C
30
1_555
hydrog
WATSON-CRICK
B
C
3
A
N3
C
3
1_555
B
G
29
A
N1
G
29
1_555
hydrog
WATSON-CRICK
B
C
3
A
N4
C
3
1_555
B
G
29
A
O6
G
29
1_555
hydrog
WATSON-CRICK
B
C
3
A
O2
C
3
1_555
B
G
29
A
N2
G
29
1_555
hydrog
WATSON-CRICK
B
C
4
A
N3
C
4
1_555
B
G
28
A
N1
G
28
1_555
hydrog
WATSON-CRICK
B
C
4
A
N4
C
4
1_555
B
G
28
A
O6
G
28
1_555
hydrog
WATSON-CRICK
B
C
4
A
O2
C
4
1_555
B
G
28
A
N2
G
28
1_555
hydrog
WATSON-CRICK
B
C
5
A
N3
C
5
1_555
B
G
27
A
N1
G
27
1_555
hydrog
WATSON-CRICK
B
C
5
A
N4
C
5
1_555
B
G
27
A
O6
G
27
1_555
hydrog
WATSON-CRICK
B
C
5
A
O2
C
5
1_555
B
G
27
A
N2
G
27
1_555
hydrog
TYPE_28_PAIR
B
G
6
A
N1
G
6
1_555
B
U
26
A
O2
U
26
1_555
hydrog
TYPE_28_PAIR
B
G
6
A
O6
G
6
1_555
B
U
26
A
N3
U
26
1_555
hydrog
WATSON-CRICK
B
G
7
A
N1
G
7
1_555
B
C
25
A
N3
C
25
1_555
hydrog
WATSON-CRICK
B
G
7
A
N2
G
7
1_555
B
C
25
A
O2
C
25
1_555
hydrog
WATSON-CRICK
B
G
7
A
O6
G
7
1_555
B
C
25
A
N4
C
25
1_555
hydrog
WATSON-CRICK
B
G
8
A
N1
G
8
1_555
B
C
24
A
N3
C
24
1_555
hydrog
WATSON-CRICK
B
G
8
A
N2
G
8
1_555
B
C
24
A
O2
C
24
1_555
hydrog
WATSON-CRICK
B
G
8
A
O6
G
8
1_555
B
C
24
A
N4
C
24
1_555
hydrog
WATSON-CRICK
B
G
9
A
N1
G
9
1_555
B
C
23
A
N3
C
23
1_555
hydrog
WATSON-CRICK
B
G
9
A
N2
G
9
1_555
B
C
23
A
O2
C
23
1_555
hydrog
WATSON-CRICK
B
G
9
A
O6
G
9
1_555
B
C
23
A
N4
C
23
1_555
hydrog
WATSON-CRICK
B
C
10
A
N3
C
10
1_555
B
G
22
A
N1
G
22
1_555
hydrog
WATSON-CRICK
B
C
10
A
N4
C
10
1_555
B
G
22
A
O6
G
22
1_555
hydrog
WATSON-CRICK
B
C
10
A
O2
C
10
1_555
B
G
22
A
N2
G
22
1_555
hydrog
WATSON-CRICK
B
G
11
A
N1
G
11
1_555
B
C
21
A
N3
C
21
1_555
hydrog
WATSON-CRICK
B
G
11
A
N2
G
11
1_555
B
C
21
A
O2
C
21
1_555
hydrog
WATSON-CRICK
B
G
11
A
O6
G
11
1_555
B
C
21
A
N4
C
21
1_555
hydrog
WATSON-CRICK
B
G
12
A
N1
G
12
1_555
B
C
20
A
N3
C
20
1_555
hydrog
WATSON-CRICK
B
G
12
A
N2
G
12
1_555
B
C
20
A
O2
C
20
1_555
hydrog
WATSON-CRICK
B
G
12
A
O6
G
12
1_555
B
C
20
A
N4
C
20
1_555
hydrog
REVERSED HOOGSTEEN
B
U
13
A
N3
U
13
1_555
B
A
17
A
N7
A
17
1_555
hydrog
REVERSED HOOGSTEEN
B
U
13
A
O2
U
13
1_555
B
A
17
A
N6
A
17
1_555
TRANSFERASE/RNA
protein-rna complex, TRANSFERASE-RNA COMPLEX
CCA_ARCFU
UNP
2
1
O28126
2DVI
PDB
1
2DVI
1
437
2DVI
1
437
O28126
A
1
1
437
1
34
2DVI
1
34
2DVI
B
2
1
34
5
3
4
3
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
42
B
TYR
42
A
VAL
45
B
VAL
45
A
GLU
59
B
GLU
59
A
PHE
66
B
PHE
66
A
VAL
107
B
VAL
107
A
TYR
115
B
TYR
115
A
VAL
100
B
VAL
100
A
VAL
104
B
VAL
104
A
SER
89
B
SER
89
A
GLU
91
B
GLU
91
A
GLU
207
B
GLU
207
A
LYS
210
B
LYS
210
A
THR
199
B
THR
199
A
ASP
202
B
ASP
202
A
PHE
215
B
PHE
215
A
VAL
217
B
VAL
217
A
PRO
315
B
PRO
315
A
ALA
322
B
ALA
322
A
PHE
326
B
PHE
326
A
CYS
333
B
CYS
333
A
ALA
277
B
ALA
277
A
ARG
284
B
ARG
284
A
GLU
413
B
GLU
413
A
ILE
415
B
ILE
415
A
VAL
341
B
VAL
341
A
GLN
348
B
GLN
348
A
ARG
373
B
ARG
373
A
MET
379
B
MET
379
A
PHE
368
B
PHE
368
A
GLU
370
B
GLU
370
BINDING SITE FOR RESIDUE SO4 A 601
A
SO4
601
Software
3
BINDING SITE FOR RESIDUE MG A 602
A
MG
602
Software
3
BINDING SITE FOR RESIDUE CTP A 504
A
CTP
504
Software
16
A
ARG
299
B
ARG
299
3
1_555
A
ARG
302
B
ARG
302
3
1_555
A
LYS
303
B
LYS
303
3
1_555
A
GLU
59
B
GLU
59
3
1_555
A
ASP
61
B
ASP
61
3
1_555
A
CTP
504
E
CTP
3
1_555
A
GLY
46
B
GLY
46
16
1_555
A
SER
47
B
SER
47
16
1_555
A
ARG
50
B
ARG
50
16
1_555
A
ASP
61
B
ASP
61
16
1_555
A
THR
130
B
THR
130
16
1_555
A
HIS
133
B
HIS
133
16
1_555
A
LYS
152
B
LYS
152
16
1_555
A
TYR
161
B
TYR
161
16
1_555
A
TYR
173
B
TYR
173
16
1_555
A
MG
602
D
MG
16
1_555
A
HOH
692
G
HOH
16
1_555
A
HOH
704
G
HOH
16
1_555
A
HOH
732
G
HOH
16
1_555
B
A
32
A
A
32
16
1_555
B
C
33
A
C
33
16
1_555
B
C
34
A
C
34
16
1_555
96
P 43 21 2