0.013376
0.007722
0.000000
0.000000
0.015445
0.000000
0.000000
0.000000
0.014267
0.00000
0.00000
0.00000
Blanchard, H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
74.762
74.762
70.090
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C3 H8 O3
92.094
GLYCEROL
GLYCERIN; PROPANE-1,2,3-TRIOL
non-polymer
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H8 O
60.095
ISOPROPYL ALCOHOL
2-PROPANOL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
C
N
138
N
O
N
139
N
C
N
140
N
O
N
141
N
C
N
142
N
O
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
Y
156
N
C
Y
157
N
N
Y
158
N
C
Y
159
N
C
Y
160
N
N
N
161
N
O
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
N
N
176
S
C
N
177
N
C
N
178
N
O
N
179
S
C
N
180
N
C
N
181
N
C
N
182
N
C
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
C
N
198
N
C
N
199
N
C
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
N
N
210
S
C
N
211
N
C
N
212
N
O
N
213
N
C
N
214
N
C
N
215
N
C
N
216
N
C
N
217
N
O
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
C
N
238
N
C
N
239
N
N
N
240
N
O
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
N
N
257
S
C
N
258
N
C
N
259
N
O
N
260
N
C
N
261
N
C
N
262
N
S
N
263
N
C
N
264
N
O
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
Y
281
N
C
Y
282
N
C
Y
283
N
C
Y
284
N
C
Y
285
N
C
Y
286
N
C
N
287
N
O
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
N
N
300
S
C
N
301
N
C
N
302
N
O
N
303
N
C
N
304
N
C
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
N
N
317
S
C
N
318
N
C
N
319
N
O
N
320
N
C
N
321
N
O
N
322
N
O
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
N
N
331
S
C
N
332
N
C
N
333
N
O
N
334
R
C
N
335
N
O
N
336
N
C
N
337
N
O
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
N
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
Y
360
N
C
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
N
N
375
S
C
N
376
N
C
N
377
N
O
N
378
N
C
Y
379
N
C
Y
380
N
C
Y
381
N
C
Y
382
N
C
Y
383
N
C
Y
384
N
C
N
385
N
O
N
386
N
O
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
397
N
H
N
398
N
N
N
399
S
C
N
400
N
C
N
401
N
O
N
402
N
C
N
403
N
C
N
404
N
C
N
405
N
O
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
doub
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
Y
153
N
sing
Y
154
N
doub
Y
155
N
doub
N
156
N
sing
Y
157
N
sing
N
158
N
sing
Y
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
doub
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
doub
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
Y
272
N
doub
Y
273
N
sing
Y
274
N
sing
N
275
N
sing
Y
276
N
doub
N
277
N
sing
Y
278
N
doub
N
279
N
sing
Y
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
doub
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
doub
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
doub
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
doub
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
Y
341
N
doub
Y
342
N
sing
Y
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
sing
Y
350
N
doub
N
351
N
sing
Y
352
N
doub
N
353
N
sing
Y
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
Y
369
N
doub
Y
370
N
sing
Y
371
N
sing
N
372
N
sing
Y
373
N
doub
N
374
N
sing
Y
375
N
doub
N
376
N
sing
Y
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
doub
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
367
1215
1226
10.1016/j.jmb.2007.01.028
17306299
Insight into Host Cell Carbohydrate-recognition by Human and Porcine Rotavirus from Crystal Structures of the Virion Spike Associated Carbohydrate-binding Domain (VP8*)
2007
DK
Acta Crystallogr.,Sect.F
1744-3091
61
989
993
10.1107/S1744309105032999
16511215
Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of the VP8* carbohydrate-binding protein of the human rotavirus strain Wa
2005
10.2210/pdb2dwr/pdb
pdb_00002dwr
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
mirrors
CCD
2004-07-16
MAR CCD 165 mm
silicon 111
SINGLE WAVELENGTH
M
x-ray
1
0.9794
1.0
BM30A
ESRF
0.9794
SYNCHROTRON
ESRF BEAMLINE BM30A
18396.184
Outer capsid protein
VP8* domain
1
man
polymer
92.094
GLYCEROL
2
syn
non-polymer
60.095
ISOPROPYL ALCOHOL
2
syn
non-polymer
18.015
water
93
nat
water
spike protein
no
no
MLDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTIFGESKQFNVSNDSNKWKFLEMF
RSSSQNEFYNRRTLTSDTRLVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGL
MLDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTIFGESKQFNVSNDSNKWKFLEMF
RSSSQNEFYNRRTLTSDTRLVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rotavirus
Rotavirus A
strain Wa
Escherichia
Escherichia coli
sample
10941
Human rotavirus A
469008
Escherichia coli BL21(DE3)
Bl21 DE3
Plasmid
pGEX-VP8(64-223)
1
3.07
59.97
VAPOR DIFFUSION, HANGING DROP
5.6
25% PEG 4000, 20% 2-propanol, 0.1M sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 295K
295
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Non-polymer description
Version format compliance
Database references
Derived calculations
Data collection
Refinement description
1
0
2007-04-03
1
1
2008-04-01
1
2
2011-07-13
1
3
2021-11-10
1
4
2024-04-03
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
PDBJ
Y
PDBJ
2006-08-16
REL
REL
GOL
GLYCEROL
IPA
ISOPROPYL ALCOHOL
HOH
water
Homology model based on the structure of porcine CRW-8 VP8* that we have solved.
Other
experimental model
GOL
4000
2
GOL
GOL
4000
A
GOL
4000
2
GOL
GOL
4001
A
IOH
5000
3
IPA
IPA
5000
A
IOH
5000
3
IPA
IPA
5001
A
HOH
1
4
HOH
HOH
5002
A
HOH
2
4
HOH
HOH
5003
A
HOH
3
4
HOH
HOH
5004
A
HOH
4
4
HOH
HOH
5005
A
HOH
5
4
HOH
HOH
5006
A
HOH
6
4
HOH
HOH
5007
A
HOH
7
4
HOH
HOH
5008
A
HOH
8
4
HOH
HOH
5009
A
HOH
9
4
HOH
HOH
5010
A
HOH
10
4
HOH
HOH
5011
A
HOH
11
4
HOH
HOH
5012
A
HOH
12
4
HOH
HOH
5013
A
HOH
13
4
HOH
HOH
5014
A
HOH
14
4
HOH
HOH
5015
A
HOH
15
4
HOH
HOH
5016
A
HOH
16
4
HOH
HOH
5017
A
HOH
17
4
HOH
HOH
5018
A
HOH
18
4
HOH
HOH
5019
A
HOH
19
4
HOH
HOH
5020
A
HOH
20
4
HOH
HOH
5021
A
HOH
21
4
HOH
HOH
5022
A
HOH
22
4
HOH
HOH
5023
A
HOH
23
4
HOH
HOH
5024
A
HOH
24
4
HOH
HOH
5025
A
HOH
25
4
HOH
HOH
5026
A
HOH
26
4
HOH
HOH
5027
A
HOH
27
4
HOH
HOH
5028
A
HOH
28
4
HOH
HOH
5029
A
HOH
29
4
HOH
HOH
5030
A
HOH
30
4
HOH
HOH
5031
A
HOH
31
4
HOH
HOH
5032
A
HOH
32
4
HOH
HOH
5033
A
HOH
33
4
HOH
HOH
5034
A
HOH
34
4
HOH
HOH
5035
A
HOH
35
4
HOH
HOH
5036
A
HOH
36
4
HOH
HOH
5037
A
HOH
37
4
HOH
HOH
5038
A
HOH
38
4
HOH
HOH
5039
A
HOH
39
4
HOH
HOH
5040
A
HOH
40
4
HOH
HOH
5041
A
HOH
41
4
HOH
HOH
5042
A
HOH
42
4
HOH
HOH
5043
A
HOH
43
4
HOH
HOH
5044
A
HOH
44
4
HOH
HOH
5045
A
HOH
45
4
HOH
HOH
5046
A
HOH
46
4
HOH
HOH
5047
A
HOH
47
4
HOH
HOH
5048
A
HOH
48
4
HOH
HOH
5049
A
HOH
49
4
HOH
HOH
5050
A
HOH
50
4
HOH
HOH
5051
A
HOH
51
4
HOH
HOH
5052
A
HOH
52
4
HOH
HOH
5053
A
HOH
53
4
HOH
HOH
5054
A
HOH
54
4
HOH
HOH
5055
A
HOH
55
4
HOH
HOH
5056
A
HOH
56
4
HOH
HOH
5057
A
HOH
57
4
HOH
HOH
5058
A
HOH
58
4
HOH
HOH
5059
A
HOH
59
4
HOH
HOH
5060
A
HOH
60
4
HOH
HOH
5061
A
HOH
61
4
HOH
HOH
5062
A
HOH
62
4
HOH
HOH
5063
A
HOH
63
4
HOH
HOH
5064
A
HOH
64
4
HOH
HOH
5065
A
HOH
65
4
HOH
HOH
5066
A
HOH
66
4
HOH
HOH
5067
A
HOH
67
4
HOH
HOH
5068
A
HOH
68
4
HOH
HOH
5069
A
HOH
69
4
HOH
HOH
5070
A
HOH
70
4
HOH
HOH
5071
A
HOH
71
4
HOH
HOH
5072
A
HOH
72
4
HOH
HOH
5073
A
HOH
73
4
HOH
HOH
5074
A
HOH
74
4
HOH
HOH
5075
A
HOH
75
4
HOH
HOH
5076
A
HOH
76
4
HOH
HOH
5077
A
HOH
77
4
HOH
HOH
5078
A
HOH
78
4
HOH
HOH
5079
A
HOH
79
4
HOH
HOH
5080
A
HOH
80
4
HOH
HOH
5081
A
HOH
81
4
HOH
HOH
5082
A
HOH
82
4
HOH
HOH
5083
A
HOH
83
4
HOH
HOH
5084
A
HOH
84
4
HOH
HOH
5085
A
HOH
85
4
HOH
HOH
5086
A
HOH
86
4
HOH
HOH
5087
A
HOH
87
4
HOH
HOH
5088
A
HOH
88
4
HOH
HOH
5089
A
HOH
89
4
HOH
HOH
5090
A
HOH
90
4
HOH
HOH
5091
A
HOH
91
4
HOH
HOH
5092
A
HOH
92
4
HOH
HOH
5093
A
HOH
93
4
HOH
HOH
5094
A
MET
64
n
1
MET
64
A
LEU
65
n
2
LEU
65
A
ASP
66
n
3
ASP
66
A
GLY
67
n
4
GLY
67
A
PRO
68
n
5
PRO
68
A
TYR
69
n
6
TYR
69
A
GLN
70
n
7
GLN
70
A
PRO
71
n
8
PRO
71
A
THR
72
n
9
THR
72
A
THR
73
n
10
THR
73
A
PHE
74
n
11
PHE
74
A
THR
75
n
12
THR
75
A
PRO
76
n
13
PRO
76
A
PRO
77
n
14
PRO
77
A
ASN
78
n
15
ASN
78
A
ASP
79
n
16
ASP
79
A
TYR
80
n
17
TYR
80
A
TRP
81
n
18
TRP
81
A
ILE
82
n
19
ILE
82
A
LEU
83
n
20
LEU
83
A
ILE
84
n
21
ILE
84
A
ASN
85
n
22
ASN
85
A
SER
86
n
23
SER
86
A
ASN
87
n
24
ASN
87
A
THR
88
n
25
THR
88
A
ASN
89
n
26
ASN
89
A
GLY
90
n
27
GLY
90
A
VAL
91
n
28
VAL
91
A
VAL
92
n
29
VAL
92
A
TYR
93
n
30
TYR
93
A
GLU
94
n
31
GLU
94
A
SER
95
n
32
SER
95
A
THR
96
n
33
THR
96
A
ASN
97
n
34
ASN
97
A
ASN
98
n
35
ASN
98
A
SER
99
n
36
SER
99
A
ASP
100
n
37
ASP
100
A
PHE
101
n
38
PHE
101
A
TRP
102
n
39
TRP
102
A
THR
103
n
40
THR
103
A
ALA
104
n
41
ALA
104
A
VAL
105
n
42
VAL
105
A
VAL
106
n
43
VAL
106
A
ALA
107
n
44
ALA
107
A
ILE
108
n
45
ILE
108
A
GLU
109
n
46
GLU
109
A
PRO
110
n
47
PRO
110
A
HIS
111
n
48
HIS
111
A
VAL
112
n
49
VAL
112
A
ASN
113
n
50
ASN
113
A
PRO
114
n
51
PRO
114
A
VAL
115
n
52
VAL
115
A
ASP
116
n
53
ASP
116
A
ARG
117
n
54
ARG
117
A
GLN
118
n
55
GLN
118
A
TYR
119
n
56
TYR
119
A
THR
120
n
57
THR
120
A
ILE
121
n
58
ILE
121
A
PHE
122
n
59
PHE
122
A
GLY
123
n
60
GLY
123
A
GLU
124
n
61
GLU
124
A
SER
125
n
62
SER
125
A
LYS
126
n
63
LYS
126
A
GLN
127
n
64
GLN
127
A
PHE
128
n
65
PHE
128
A
ASN
129
n
66
ASN
129
A
VAL
130
n
67
VAL
130
A
SER
131
n
68
SER
131
A
ASN
132
n
69
ASN
132
A
ASP
133
n
70
ASP
133
A
SER
134
n
71
SER
134
A
ASN
135
n
72
ASN
135
A
LYS
136
n
73
LYS
136
A
TRP
137
n
74
TRP
137
A
LYS
138
n
75
LYS
138
A
PHE
139
n
76
PHE
139
A
LEU
140
n
77
LEU
140
A
GLU
141
n
78
GLU
141
A
MET
142
n
79
MET
142
A
PHE
143
n
80
PHE
143
A
ARG
144
n
81
ARG
144
A
SER
145
n
82
SER
145
A
SER
146
n
83
SER
146
A
SER
147
n
84
SER
147
A
GLN
148
n
85
GLN
148
A
ASN
149
n
86
ASN
149
A
GLU
150
n
87
GLU
150
A
PHE
151
n
88
PHE
151
A
TYR
152
n
89
TYR
152
A
ASN
153
n
90
ASN
153
A
ARG
154
n
91
ARG
154
A
ARG
155
n
92
ARG
155
A
THR
156
n
93
THR
156
A
LEU
157
n
94
LEU
157
A
THR
158
n
95
THR
158
A
SER
159
n
96
SER
159
A
ASP
160
n
97
ASP
160
A
THR
161
n
98
THR
161
A
ARG
162
n
99
ARG
162
A
LEU
163
n
100
LEU
163
A
VAL
164
n
101
VAL
164
A
GLY
165
n
102
GLY
165
A
ILE
166
n
103
ILE
166
A
LEU
167
n
104
LEU
167
A
LYS
168
n
105
LYS
168
A
TYR
169
n
106
TYR
169
A
GLY
170
n
107
GLY
170
A
GLY
171
n
108
GLY
171
A
ARG
172
n
109
ARG
172
A
VAL
173
n
110
VAL
173
A
TRP
174
n
111
TRP
174
A
THR
175
n
112
THR
175
A
PHE
176
n
113
PHE
176
A
HIS
177
n
114
HIS
177
A
GLY
178
n
115
GLY
178
A
GLU
179
n
116
GLU
179
A
THR
180
n
117
THR
180
A
PRO
181
n
118
PRO
181
A
ARG
182
n
119
ARG
182
A
ALA
183
n
120
ALA
183
A
THR
184
n
121
THR
184
A
THR
185
n
122
THR
185
A
ASP
186
n
123
ASP
186
A
SER
187
n
124
SER
187
A
SER
188
n
125
SER
188
A
SER
189
n
126
SER
189
A
THR
190
n
127
THR
190
A
ALA
191
n
128
ALA
191
A
ASN
192
n
129
ASN
192
A
LEU
193
n
130
LEU
193
A
ASN
194
n
131
ASN
194
A
ASN
195
n
132
ASN
195
A
ILE
196
n
133
ILE
196
A
SER
197
n
134
SER
197
A
ILE
198
n
135
ILE
198
A
THR
199
n
136
THR
199
A
ILE
200
n
137
ILE
200
A
HIS
201
n
138
HIS
201
A
SER
202
n
139
SER
202
A
GLU
203
n
140
GLU
203
A
PHE
204
n
141
PHE
204
A
TYR
205
n
142
TYR
205
A
ILE
206
n
143
ILE
206
A
ILE
207
n
144
ILE
207
A
PRO
208
n
145
PRO
208
A
ARG
209
n
146
ARG
209
A
SER
210
n
147
SER
210
A
GLN
211
n
148
GLN
211
A
GLU
212
n
149
GLU
212
A
SER
213
n
150
SER
213
A
LYS
214
n
151
LYS
214
A
CYS
215
n
152
CYS
215
A
ASN
216
n
153
ASN
216
A
GLU
217
n
154
GLU
217
A
TYR
218
n
155
TYR
218
A
ILE
219
n
156
ILE
219
A
ASN
220
n
157
ASN
220
A
ASN
221
n
158
ASN
221
A
GLY
222
n
159
GLY
222
A
LEU
223
n
160
LEU
223
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
69
A
N
TYR
6
A
O
PHE
204
A
O
PHE
141
A
O
ILE
207
A
O
ILE
144
A
N
TRP
81
A
N
TRP
18
A
N
ILE
84
A
N
ILE
21
A
O
VAL
164
A
O
VAL
101
A
N
LEU
167
A
N
LEU
104
A
O
TRP
174
A
O
TRP
111
A
O
GLY
178
A
O
GLY
115
A
N
THR
158
A
N
THR
95
A
O
ARG
155
A
O
ARG
92
A
N
GLU
141
A
N
GLU
78
A
O
MET
142
A
O
MET
79
A
N
ALA
104
A
N
ALA
41
A
O
VAL
105
A
O
VAL
42
A
N
VAL
92
A
N
VAL
29
A
N
GLU
94
A
N
GLU
31
A
O
THR
199
A
O
THR
136
A
O
ILE
198
A
O
ILE
135
A
N
PHE
74
A
N
PHE
11
A
N
TYR
69
A
N
TYR
6
A
O
PHE
204
A
O
PHE
141
A
O
ILE
207
A
O
ILE
144
A
N
TRP
81
A
N
TRP
18
A
N
ILE
84
A
N
ILE
21
A
O
VAL
164
A
O
VAL
101
A
N
LEU
167
A
N
LEU
104
A
O
TRP
174
A
O
TRP
111
A
N
HIS
177
A
N
HIS
114
A
O
THR
184
A
O
THR
121
A
N
TYR
119
A
N
TYR
56
A
O
LYS
126
A
O
LYS
63
1
A
HOH
5069
F
HOH
1
A
ASN
89
-105.48
44.35
1
A
ASN
98
58.17
17.66
1
A
SER
99
-129.47
-62.14
1
A
PRO
114
-37.63
127.27
1
A
SER
210
-36.23
-29.90
31.888
1.36
0.68
0.00
1.36
0.00
-2.04
0.952
0.910
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.23508
0.17718
0.17973
2.50
64.55
355
8114
7491
4.5
96.54
7.301
0.163
RANDOM
1
THROUGHOUT
2.0
MOLECULAR REPLACEMENT
0.402
0.263
0.80
0.80
1.40
Homology model based on the structure of porcine CRW-8 VP8* that we have solved.
MAXIMUM LIKELIHOOD
MASK
2.50
64.55
93
1413
20
0
1300
0.008
0.022
1356
1.106
1.925
1846
6.653
5.000
161
33.678
24.366
71
16.865
15.000
209
12.765
15.000
8
0.082
0.200
200
0.003
0.020
1057
0.197
0.200
583
0.307
0.200
909
0.115
0.200
102
0.206
0.200
40
0.169
0.200
10
0.528
1.500
829
0.949
2.000
1322
1.193
3.000
608
1.973
4.500
523
0.237
0.271
2.565
23
533
20
97.20
2.5
64.6
2DWR
8135
1
refinement
REFMAC
5.2.0019
data collection
XNEMO
data collection
FIP
BM30A
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
phasing
AMoRE
Crystal structure of the human Wa rotavirus VP8* carbohydrate-recognising domain
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
4
N
N
A
GLN
211
A
GLN
148
HELX_P
A
GLY
222
A
GLY
159
1
1
12
VIRAL PROTEIN
beta-sandwich, VIRAL PROTEIN
A
GLY
67
A
GLY
4
1
A
PRO
68
A
PRO
5
7.35
A
THR
180
A
THR
117
1
A
PRO
181
A
PRO
118
2.73
Q86202_9REOV
UNP
1
64
Q86202
MLDGPYQPTTFTPPNDYWILINSNTNGVVYESTNNSDFWTAVVAIEPHVNPVDRQYTIFGESKQFNVSNDSNKWKFLEMF
RSSSQNEFYNRRTLTSDTRFVGILKYGGRVWTFHGETPRATTDSSSTANLNNISITIHSEFYIIPRSQESKCNEYINNGL
64
223
2DWR
64
223
Q86202
A
1
1
160
1
PHE
engineered mutation
LEU
163
2DWR
A
Q86202
UNP
163
100
11
6
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
ASP
66
A
ASP
3
A
TYR
69
A
TYR
6
A
PHE
204
A
PHE
141
A
PRO
208
A
PRO
145
A
TYR
80
A
TYR
17
A
ASN
85
A
ASN
22
A
LEU
163
A
LEU
100
A
TYR
169
A
TYR
106
A
ARG
172
A
ARG
109
A
GLU
179
A
GLU
116
A
TYR
152
A
TYR
89
A
SER
159
A
SER
96
A
TRP
137
A
TRP
74
A
ARG
144
A
ARG
81
A
TRP
102
A
TRP
39
A
ILE
108
A
ILE
45
A
VAL
91
A
VAL
28
A
THR
96
A
THR
33
A
SER
197
A
SER
134
A
ILE
200
A
ILE
137
A
THR
72
A
THR
9
A
PHE
74
A
PHE
11
A
ASP
66
A
ASP
3
A
TYR
69
A
TYR
6
A
PHE
204
A
PHE
141
A
PRO
208
A
PRO
145
A
TYR
80
A
TYR
17
A
ASN
85
A
ASN
22
A
LEU
163
A
LEU
100
A
TYR
169
A
TYR
106
A
ARG
172
A
ARG
109
A
GLU
179
A
GLU
116
A
THR
184
A
THR
121
A
SER
189
A
SER
126
A
VAL
112
A
VAL
49
A
ILE
121
A
ILE
58
A
GLU
124
A
GLU
61
A
ASN
132
A
ASN
69
BINDING SITE FOR RESIDUE GOL A 4000
A
GOL
4000
Software
5
BINDING SITE FOR RESIDUE GOL A 4001
A
GOL
4001
Software
9
BINDING SITE FOR RESIDUE IPA A 5000
A
IPA
5000
Software
5
BINDING SITE FOR RESIDUE IPA A 5001
A
IPA
5001
Software
5
A
LEU
167
A
LEU
104
5
1_555
A
TRP
174
A
TRP
111
5
1_555
A
THR
185
A
THR
122
5
1_555
A
ARG
209
A
ARG
146
5
1_555
A
GLU
212
A
GLU
149
5
1_555
A
GLY
90
A
GLY
27
9
3_565
A
VAL
91
A
VAL
28
9
3_565
A
TYR
119
A
TYR
56
9
3_565
A
THR
120
A
THR
57
9
3_565
A
ARG
155
A
ARG
92
9
1_555
A
THR
156
A
THR
93
9
1_555
A
HIS
177
A
HIS
114
9
1_555
A
IPA
5001
E
IPA
9
1_555
A
HOH
5054
F
HOH
9
1_555
A
ARG
117
A
ARG
54
5
1_555
A
GLN
118
A
GLN
55
5
1_555
A
HIS
177
A
HIS
114
5
2_664
A
GLY
178
A
GLY
115
5
2_664
A
HOH
5091
F
HOH
5
2_664
A
ASN
153
A
ASN
90
5
1_555
A
ARG
154
A
ARG
91
5
1_555
A
THR
156
A
THR
93
5
1_555
A
HIS
201
A
HIS
138
5
3_565
A
GOL
4001
C
GOL
5
1_555
154
P 32 2 1