0.015779 0.000000 0.005069 0.000000 0.019836 0.000000 0.000000 0.000000 0.015936 0.00000 0.00000 0.00000 Mir, R. Singh, N. Sinha, M. Sharma, S. Bhushan, A. Singh, T.P. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 107.81 90.00 63.374 50.413 65.909 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C6 H12 O6 180.156 beta-D-mannopyranose beta-D-mannose; D-mannose; mannose D-saccharide, beta linking C O3 -2 60.009 CARBONATE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking Fe 3 55.845 FE (III) ION non-polymer C6 H12 O6 180.156 alpha-D-glucopyranose alpha-D-glucose; D-glucose; glucose D-saccharide, alpha linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C6 H12 O6 180.156 alpha-D-mannopyranose alpha-D-mannose; D-mannose; mannose D-saccharide, alpha linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C8 H15 N O6 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose N-acetyl-beta-D-glucosamine; 2-acetamido-2-deoxy-beta-D-glucose; 2-acetamido-2-deoxy-D-glucose; 2-acetamido-2-deoxy-glucose; N-ACETYL-D-GLUCOSAMINE D-saccharide, beta linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking O4 S -2 96.063 SULFATE ION non-polymer C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 R C N 75 S C N 76 S C N 77 S C N 78 R C N 79 N C N 80 N O N 81 N O N 82 N O N 83 N O N 84 N O N 85 N O N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N C N 99 N O N 100 N O N 101 N O N 102 N N N 103 R C N 104 N C N 105 N O N 106 N C N 107 N S N 108 N O N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N FE N 117 S C N 118 R C N 119 S C N 120 S C N 121 R C N 122 N C N 123 N O N 124 N O N 125 N O N 126 N O N 127 N O N 128 N O N 129 N H N 130 N H N 131 N H N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N N N 142 S C N 143 N C N 144 N O N 145 N C N 146 N C N 147 N C N 148 N O N 149 N N N 150 N O N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 N C N 166 N C N 167 N C N 168 N O N 169 N O N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 N C N 182 N C N 183 N O N 184 N O N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N N N 191 S C N 192 N C N 193 N O N 194 N C Y 195 N C Y 196 N N Y 197 N C Y 198 N C Y 199 N N N 200 N O N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N H N 207 N H N 208 N H N 209 N H N 210 N H N 211 N O N 212 N H N 213 N H N 214 N N N 215 S C N 216 N C N 217 N O N 218 S C N 219 N C N 220 N C N 221 N C N 222 N O N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N N N 237 S C N 238 N C N 239 N O N 240 N C N 241 N C N 242 N C N 243 N C N 244 N O N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N H N 258 N N N 259 S C N 260 N C N 261 N O N 262 N C N 263 N C N 264 N C N 265 N C N 266 N N N 267 N O N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 S C N 284 S C N 285 S C N 286 S C N 287 R C N 288 N C N 289 N O N 290 N O N 291 N O N 292 N O N 293 N O N 294 N O N 295 N H N 296 N H N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N N N 308 S C N 309 N C N 310 N O N 311 N C N 312 N C N 313 N S N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 R C N 328 R C N 329 R C N 330 S C N 331 R C N 332 N C N 333 N C N 334 N C N 335 N N N 336 N O N 337 N O N 338 N O N 339 N O N 340 N O N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N N N 358 S C N 359 N C N 360 N O N 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N N N 398 S C N 399 N C N 400 N O N 401 N C N 402 N O N 403 N O N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N S N 412 N O N 413 N O N 414 N O N 415 N O N 416 N N N 417 S C N 418 N C N 419 N O N 420 R C N 421 N O N 422 N C N 423 N O N 424 N H N 425 N H N 426 N H N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N N N 434 S C N 435 N C N 436 N O N 437 N C Y 438 N C Y 439 N C Y 440 N C Y 441 N N Y 442 N C Y 443 N C Y 444 N C Y 445 N C Y 446 N C N 447 N O N 448 N H N 449 N H N 450 N H N 451 N H N 452 N H N 453 N H N 454 N H N 455 N H N 456 N H N 457 N H N 458 N H N 459 N H N 460 N N N 461 S C N 462 N C N 463 N O N 464 N C Y 465 N C Y 466 N C Y 467 N C Y 468 N C Y 469 N C Y 470 N C N 471 N O N 472 N O N 473 N H N 474 N H N 475 N H N 476 N H N 477 N H N 478 N H N 479 N H N 480 N H N 481 N H N 482 N H N 483 N H N 484 N N N 485 S C N 486 N C N 487 N O N 488 N C N 489 N C N 490 N C N 491 N O N 492 N H N 493 N H N 494 N H N 495 N H N 496 N H N 497 N H N 498 N H N 499 N H N 500 N H N 501 N H N 502 N H N 503 N ZN N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N doub N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N doub N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N doub N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N doub N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N doub N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N doub N 187 N sing N 188 N sing N 189 N sing N 190 N sing Y 191 N sing Y 192 N doub Y 193 N doub N 194 N sing Y 195 N sing N 196 N sing Y 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N doub N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N doub N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N doub N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N sing N 386 N sing N 387 N sing N 388 N doub N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N doub N 396 N doub N 397 N sing N 398 N sing N 399 N sing N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N doub N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N sing N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N doub N 422 N sing N 423 N sing N 424 N sing N 425 N sing Y 426 N doub Y 427 N sing Y 428 N sing N 429 N sing Y 430 N doub Y 431 N sing Y 432 N sing N 433 N sing Y 434 N sing Y 435 N doub N 436 N sing Y 437 N doub N 438 N sing Y 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N sing N 446 N sing N 447 N sing N 448 N sing N 449 N doub N 450 N sing N 451 N sing N 452 N sing N 453 N sing Y 454 N doub Y 455 N sing Y 456 N sing N 457 N sing Y 458 N doub N 459 N sing Y 460 N doub N 461 N sing Y 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N sing N 470 N sing N 471 N sing N 472 N sing N 473 N doub N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing N 481 N sing N 482 N sing N 483 N sing N 484 N sing To be Published 0353 Structure of the complex of C-terminal lobe of bovine lactoferrin with trehalose at 2.0 A resolution 10.2210/pdb2dxy/pdb pdb_00002dxy GLC D 1 HAS WRONG CHIRALITY AT ATOM C1 GLC D 1 HAS WRONG CHIRALITY AT ATOM C2 GLC D 1 HAS WRONG CHIRALITY AT ATOM C3 GLC D 1 HAS WRONG CHIRALITY AT ATOM C4 GLC D 1 HAS WRONG CHIRALITY AT ATOM C5 GLC D 2 HAS WRONG CHIRALITY AT ATOM C1 GLC D 2 HAS WRONG CHIRALITY AT ATOM C2 GLC D 2 HAS WRONG CHIRALITY AT ATOM C3 GLC D 2 HAS WRONG CHIRALITY AT ATOM C4 GLC D 2 HAS WRONG CHIRALITY AT ATOM C5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 292 1 Mirorr IMAGE PLATE 2006-08-31 MAR scanner 345 mm plate graphite SINGLE WAVELENGTH M x-ray 1 1.5412 1.0 1.5412 ROTATING ANODE RIGAKU RU300 37655.504 Lactotransferrin 3.4.21.- C-terminal lobe(residues 342-686) 1 nat polymer 586.542 beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 748.682 beta-D-mannopyranose-(1-4)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 1 man branched 342.297 alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose 1 man branched 221.208 2-acetamido-2-deoxy-beta-D-glucopyranose 1 man non-polymer 65.409 ZINC ION 2 syn non-polymer 55.845 FE (III) ION 1 syn non-polymer 60.009 CARBONATE ION 1 syn non-polymer 96.063 SULFATE ION 1 syn non-polymer 18.015 water 291 nat water Lactoferrin trehalose no no YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPV TEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL GTEYVTAIANLKKCSTSPLLEACAF YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLKREDFRLLCLDGTRKPV TEAQSCHLAVAPNHAVVSRSDRAAHVEQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL GTEYVTAIANLKKCSTSPLLEACAF A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n cattle Bos sample 9913 Bos taurus 1 2.66 53.78 VAPOR DIFFUSION, HANGING DROP 6.5 0.1M MES, PEG MONOMETHYLETHER, 0.1M ZNSO4, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software atom_site chem_comp database_PDB_caveat entity entity_name_com pdbx_branch_scheme pdbx_chem_comp_identifier pdbx_entity_branch pdbx_entity_branch_descriptor pdbx_entity_branch_link pdbx_entity_branch_list pdbx_entity_nonpoly pdbx_molecule_features pdbx_nonpoly_scheme pdbx_struct_assembly_gen pdbx_struct_conn_angle pdbx_validate_chiral struct_asym struct_conn struct_site struct_site_gen chem_comp chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model repository Initial release Carbohydrate remediation repository Remediation Version format compliance Non-polymer description Version format compliance Refinement description Advisory Atomic model Data collection Derived calculations Non-polymer description Structure summary Data collection Database references Refinement description Structure summary 1 0 2006-09-19 1 1 2008-04-30 1 2 2011-07-13 1 3 2017-10-11 2 0 2020-07-29 2 1 2023-10-25 _software.name _atom_site.B_iso_or_equiv _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.label_asym_id _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_entity_id _atom_site.type_symbol _chem_comp.formula _chem_comp.formula_weight _chem_comp.id _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.type _entity.formula_weight _entity.pdbx_description _entity.pdbx_number_of_molecules _entity.src_method _entity.type _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.value _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _chem_comp.pdbx_synonyms _database_2.pdbx_DOI _database_2.pdbx_database_accession B NAG 2 n B NAG 1 B NAG 3 n B NAG 2 B MAN 4 n B BMA 3 C NAG 5 n C NAG 1 C NAG 6 n C NAG 2 C MAN 7 n C MAN 3 C MAN 8 n C BMA 4 TRE 1151 n D GLC 1 TRE 1151 n D GLC 2 DManpb b-D-mannopyranose b-D-Manp Man DGlcpa a-D-glucopyranose a-D-Glcp Glc DManpa a-D-mannopyranose a-D-Manp Man DGlcpNAcb N-acetyl-b-D-glucopyranosamine b-D-GlcpNAc GlcNAc Crystal structure of bovine lactoferrin C-lobe liganded with Glucose at 2.8 A resolution Structure of the complex of C-terminal lobe of bovine lactoferrin with raffinose at 2.3 A resolution PDBJ Y PDBJ 2006-09-03 REL oligosaccharide oligosaccharide oligosaccharide DManpb1-4DGlcpNAcb1-4DGlcpNAcb1- 2 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5]/1-1-2/a4-b1_b4-c1 2 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}} 2 PDB-CARE LINUCS DManpb1-4DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 3 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/3,4,3/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5][a1122h-1b_1-5]/1-1-2-3/a4-b1_b4-c1_c4-d1 3 PDB2Glycan 1.1.0 WURCS []{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][a-D-Manp]{[(4+1)][b-D-Manp]{}}}}} 3 PDB-CARE LINUCS DGlcpa1-1DGlcpa 4 GMML 1.0 Glycam Condensed Sequence WURCS=2.0/1,2,1/[a2122h-1a_1-5]/1-1/a1-b1 4 PDB2Glycan 1.1.0 WURCS [][a-L-Idop]{[(1+1)][b-L-Idop]{}} 4 PDB-CARE LINUCS C1 O4 NAG NAG 2 1 2 O1 HO4 sing C1 O4 BMA NAG 3 2 2 O1 HO4 sing C1 O4 NAG NAG 2 1 3 O1 HO4 sing C1 O4 MAN NAG 3 2 3 O1 HO4 sing C1 O4 BMA MAN 4 3 3 O1 HO4 sing C1 O1 GLC GLC 1 2 4 O1 HO1 sing n n n n n n n n n NAG 2-acetamido-2-deoxy-beta-D-glucopyranose ZN ZINC ION FE FE (III) ION CO3 CARBONATE ION SO4 SULFATE ION HOH water THERE IS A CONFLICT BETWEEN SEQRES(LYS A 565, GLU A 608) AND SEQUENCE DATABASE (ASN, LYS). THE AUTHORS BELIEVE THAT THE SEQRES IS CORRECT AND IS THE TRUE IDENTITY OF THESE RESIDUES AND IS NATURAL MUTANT. 2B6D PDB experimental model Nutrient oligosaccharide with reducing-end-to-reducing-end glycosidic bond trehalose Oligosaccharide NAG 1001 5 NAG NAG 1001 A ZN 1101 6 ZN ZN 1101 A ZN 1102 6 ZN ZN 1102 A FE 1687 7 FE FE 1687 A CO3 1999 8 CO3 CO3 1999 A SO4 501 9 SO4 SO4 2000 A HOH 1 10 HOH HOH 2001 A HOH 2 10 HOH HOH 2002 A HOH 3 10 HOH HOH 2003 A HOH 4 10 HOH HOH 2004 A HOH 5 10 HOH HOH 2005 A HOH 6 10 HOH HOH 2006 A HOH 7 10 HOH HOH 2007 A HOH 8 10 HOH HOH 2008 A HOH 9 10 HOH HOH 2009 A HOH 10 10 HOH HOH 2010 A HOH 11 10 HOH HOH 2011 A HOH 12 10 HOH HOH 2012 A HOH 13 10 HOH HOH 2013 A HOH 14 10 HOH HOH 2014 A HOH 15 10 HOH HOH 2015 A HOH 16 10 HOH HOH 2016 A HOH 17 10 HOH HOH 2017 A HOH 18 10 HOH HOH 2018 A HOH 19 10 HOH HOH 2019 A HOH 20 10 HOH HOH 2020 A HOH 21 10 HOH HOH 2021 A HOH 22 10 HOH HOH 2022 A HOH 23 10 HOH HOH 2023 A HOH 24 10 HOH HOH 2024 A HOH 25 10 HOH HOH 2025 A HOH 26 10 HOH HOH 2026 A HOH 27 10 HOH HOH 2027 A HOH 28 10 HOH HOH 2028 A HOH 29 10 HOH HOH 2029 A HOH 30 10 HOH HOH 2030 A HOH 31 10 HOH HOH 2031 A HOH 32 10 HOH HOH 2032 A HOH 33 10 HOH HOH 2033 A HOH 34 10 HOH HOH 2034 A HOH 35 10 HOH HOH 2035 A HOH 36 10 HOH HOH 2036 A HOH 37 10 HOH HOH 2037 A HOH 38 10 HOH HOH 2038 A HOH 39 10 HOH HOH 2039 A HOH 40 10 HOH HOH 2040 A HOH 41 10 HOH HOH 2041 A HOH 42 10 HOH HOH 2042 A HOH 43 10 HOH HOH 2043 A HOH 44 10 HOH HOH 2044 A HOH 45 10 HOH HOH 2045 A HOH 46 10 HOH HOH 2046 A HOH 47 10 HOH HOH 2047 A HOH 48 10 HOH HOH 2048 A HOH 49 10 HOH HOH 2049 A HOH 50 10 HOH HOH 2050 A HOH 51 10 HOH HOH 2051 A HOH 52 10 HOH HOH 2052 A HOH 53 10 HOH HOH 2053 A HOH 54 10 HOH HOH 2054 A HOH 55 10 HOH HOH 2055 A HOH 56 10 HOH HOH 2056 A HOH 57 10 HOH HOH 2057 A HOH 58 10 HOH HOH 2058 A HOH 59 10 HOH HOH 2059 A HOH 60 10 HOH HOH 2060 A HOH 61 10 HOH HOH 2061 A HOH 62 10 HOH HOH 2062 A HOH 63 10 HOH HOH 2063 A HOH 64 10 HOH HOH 2064 A HOH 65 10 HOH HOH 2065 A HOH 66 10 HOH HOH 2066 A HOH 67 10 HOH HOH 2067 A HOH 68 10 HOH HOH 2068 A HOH 69 10 HOH HOH 2069 A HOH 70 10 HOH HOH 2070 A HOH 71 10 HOH HOH 2071 A HOH 72 10 HOH HOH 2072 A HOH 73 10 HOH HOH 2073 A HOH 74 10 HOH HOH 2074 A HOH 75 10 HOH HOH 2075 A HOH 76 10 HOH HOH 2076 A HOH 77 10 HOH HOH 2077 A HOH 78 10 HOH HOH 2078 A HOH 79 10 HOH HOH 2079 A HOH 80 10 HOH HOH 2080 A HOH 81 10 HOH HOH 2081 A HOH 82 10 HOH HOH 2082 A HOH 83 10 HOH HOH 2083 A HOH 84 10 HOH HOH 2084 A HOH 85 10 HOH HOH 2085 A HOH 86 10 HOH HOH 2086 A HOH 87 10 HOH HOH 2087 A HOH 88 10 HOH HOH 2088 A HOH 89 10 HOH HOH 2089 A HOH 90 10 HOH HOH 2090 A HOH 91 10 HOH HOH 2091 A HOH 92 10 HOH HOH 2092 A HOH 93 10 HOH HOH 2093 A HOH 94 10 HOH HOH 2094 A HOH 95 10 HOH HOH 2095 A HOH 96 10 HOH HOH 2096 A HOH 97 10 HOH HOH 2097 A HOH 98 10 HOH HOH 2098 A HOH 99 10 HOH HOH 2099 A HOH 100 10 HOH HOH 2100 A HOH 101 10 HOH HOH 2101 A HOH 102 10 HOH HOH 2102 A HOH 103 10 HOH HOH 2103 A HOH 104 10 HOH HOH 2104 A HOH 105 10 HOH HOH 2105 A HOH 106 10 HOH HOH 2106 A HOH 107 10 HOH HOH 2107 A HOH 108 10 HOH HOH 2108 A HOH 109 10 HOH HOH 2109 A HOH 110 10 HOH HOH 2110 A HOH 111 10 HOH HOH 2111 A HOH 112 10 HOH HOH 2112 A HOH 113 10 HOH HOH 2113 A HOH 114 10 HOH HOH 2114 A HOH 115 10 HOH HOH 2115 A HOH 116 10 HOH HOH 2116 A HOH 117 10 HOH HOH 2117 A HOH 118 10 HOH HOH 2118 A HOH 119 10 HOH HOH 2119 A HOH 120 10 HOH HOH 2120 A HOH 121 10 HOH HOH 2121 A HOH 122 10 HOH HOH 2122 A HOH 123 10 HOH HOH 2123 A HOH 124 10 HOH HOH 2124 A HOH 125 10 HOH HOH 2125 A HOH 126 10 HOH HOH 2126 A HOH 127 10 HOH HOH 2127 A HOH 128 10 HOH HOH 2128 A HOH 129 10 HOH HOH 2129 A HOH 130 10 HOH HOH 2130 A HOH 131 10 HOH HOH 2131 A HOH 132 10 HOH HOH 2132 A HOH 133 10 HOH HOH 2133 A HOH 134 10 HOH HOH 2134 A HOH 135 10 HOH HOH 2135 A HOH 136 10 HOH HOH 2136 A HOH 137 10 HOH HOH 2137 A HOH 138 10 HOH HOH 2138 A HOH 139 10 HOH HOH 2139 A HOH 140 10 HOH HOH 2140 A HOH 141 10 HOH HOH 2141 A HOH 142 10 HOH HOH 2142 A HOH 143 10 HOH HOH 2143 A HOH 144 10 HOH HOH 2144 A HOH 145 10 HOH HOH 2145 A HOH 146 10 HOH HOH 2146 A HOH 147 10 HOH HOH 2147 A HOH 148 10 HOH HOH 2148 A HOH 149 10 HOH HOH 2149 A HOH 150 10 HOH HOH 2150 A HOH 151 10 HOH HOH 2151 A HOH 152 10 HOH HOH 2152 A HOH 153 10 HOH HOH 2153 A HOH 154 10 HOH HOH 2154 A HOH 155 10 HOH HOH 2155 A HOH 156 10 HOH HOH 2156 A HOH 157 10 HOH HOH 2157 A HOH 158 10 HOH HOH 2158 A HOH 159 10 HOH HOH 2159 A HOH 160 10 HOH HOH 2160 A HOH 161 10 HOH HOH 2161 A HOH 162 10 HOH HOH 2162 A HOH 163 10 HOH HOH 2163 A HOH 164 10 HOH HOH 2164 A HOH 165 10 HOH HOH 2165 A HOH 166 10 HOH HOH 2166 A HOH 167 10 HOH HOH 2167 A HOH 168 10 HOH HOH 2168 A HOH 169 10 HOH HOH 2169 A HOH 170 10 HOH HOH 2170 A HOH 171 10 HOH HOH 2171 A HOH 172 10 HOH HOH 2172 A HOH 173 10 HOH HOH 2173 A HOH 174 10 HOH HOH 2174 A HOH 175 10 HOH HOH 2175 A HOH 176 10 HOH HOH 2176 A HOH 177 10 HOH HOH 2177 A HOH 178 10 HOH HOH 2178 A HOH 179 10 HOH HOH 2179 A HOH 180 10 HOH HOH 2180 A HOH 181 10 HOH HOH 2181 A HOH 182 10 HOH HOH 2182 A HOH 183 10 HOH HOH 2183 A HOH 184 10 HOH HOH 2184 A HOH 185 10 HOH HOH 2185 A HOH 186 10 HOH HOH 2186 A HOH 187 10 HOH HOH 2187 A HOH 188 10 HOH HOH 2188 A HOH 189 10 HOH HOH 2189 A HOH 190 10 HOH HOH 2190 A HOH 191 10 HOH HOH 2191 A HOH 192 10 HOH HOH 2192 A HOH 193 10 HOH HOH 2193 A HOH 194 10 HOH HOH 2194 A HOH 195 10 HOH HOH 2195 A HOH 196 10 HOH HOH 2196 A HOH 197 10 HOH HOH 2197 A HOH 198 10 HOH HOH 2198 A HOH 199 10 HOH HOH 2199 A HOH 200 10 HOH HOH 2200 A HOH 201 10 HOH HOH 2201 A HOH 202 10 HOH HOH 2202 A HOH 203 10 HOH HOH 2203 A HOH 204 10 HOH HOH 2204 A HOH 205 10 HOH HOH 2205 A HOH 206 10 HOH HOH 2206 A HOH 207 10 HOH HOH 2207 A HOH 208 10 HOH HOH 2208 A HOH 209 10 HOH HOH 2209 A HOH 210 10 HOH HOH 2210 A HOH 211 10 HOH HOH 2211 A HOH 212 10 HOH HOH 2212 A HOH 213 10 HOH HOH 2213 A HOH 214 10 HOH HOH 2214 A HOH 215 10 HOH HOH 2215 A HOH 216 10 HOH HOH 2216 A HOH 217 10 HOH HOH 2217 A HOH 218 10 HOH HOH 2218 A HOH 219 10 HOH HOH 2219 A HOH 220 10 HOH HOH 2220 A HOH 221 10 HOH HOH 2221 A HOH 222 10 HOH HOH 2222 A HOH 223 10 HOH HOH 2223 A HOH 224 10 HOH HOH 2224 A HOH 225 10 HOH HOH 2225 A HOH 226 10 HOH HOH 2226 A HOH 227 10 HOH HOH 2227 A HOH 228 10 HOH HOH 2228 A HOH 229 10 HOH HOH 2229 A HOH 230 10 HOH HOH 2230 A HOH 231 10 HOH HOH 2231 A HOH 232 10 HOH HOH 2232 A HOH 233 10 HOH HOH 2233 A HOH 234 10 HOH HOH 2234 A HOH 235 10 HOH HOH 2235 A HOH 236 10 HOH HOH 2236 A HOH 237 10 HOH HOH 2237 A HOH 238 10 HOH HOH 2238 A HOH 239 10 HOH HOH 2239 A HOH 240 10 HOH HOH 2240 A HOH 241 10 HOH HOH 2241 A HOH 242 10 HOH HOH 2242 A HOH 243 10 HOH HOH 2243 A HOH 244 10 HOH HOH 2244 A HOH 245 10 HOH HOH 2245 A HOH 246 10 HOH HOH 2246 A HOH 247 10 HOH HOH 2247 A HOH 248 10 HOH HOH 2248 A HOH 249 10 HOH HOH 2249 A HOH 250 10 HOH HOH 2250 A HOH 251 10 HOH HOH 2251 A HOH 252 10 HOH HOH 2252 A HOH 253 10 HOH HOH 2253 A HOH 254 10 HOH HOH 2254 A HOH 255 10 HOH HOH 2255 A HOH 256 10 HOH HOH 2256 A HOH 257 10 HOH HOH 2257 A HOH 258 10 HOH HOH 2258 A HOH 259 10 HOH HOH 2259 A HOH 260 10 HOH HOH 2260 A HOH 261 10 HOH HOH 2261 A HOH 262 10 HOH HOH 2262 A HOH 263 10 HOH HOH 2263 A HOH 264 10 HOH HOH 2264 A HOH 265 10 HOH HOH 2265 A HOH 266 10 HOH HOH 2266 A HOH 267 10 HOH HOH 2267 A HOH 268 10 HOH HOH 2268 A HOH 269 10 HOH HOH 2269 A HOH 270 10 HOH HOH 2270 A HOH 271 10 HOH HOH 2271 A HOH 272 10 HOH HOH 2272 A HOH 273 10 HOH HOH 2273 A HOH 274 10 HOH HOH 2274 A HOH 275 10 HOH HOH 2275 A HOH 276 10 HOH HOH 2276 A HOH 277 10 HOH HOH 2277 A HOH 278 10 HOH HOH 2278 A HOH 279 10 HOH HOH 2279 A HOH 280 10 HOH HOH 2280 A HOH 281 10 HOH HOH 2281 A HOH 282 10 HOH HOH 2282 A HOH 283 10 HOH HOH 2283 A HOH 284 10 HOH HOH 2284 A HOH 285 10 HOH HOH 2285 A HOH 286 10 HOH HOH 2286 A HOH 287 10 HOH HOH 2287 A HOH 288 10 HOH HOH 2288 A HOH 289 10 HOH HOH 2289 A HOH 290 10 HOH HOH 2290 A HOH 291 10 HOH HOH 2291 A TYR 342 n 1 TYR 342 A THR 343 n 2 THR 343 A ARG 344 n 3 ARG 344 A VAL 345 n 4 VAL 345 A VAL 346 n 5 VAL 346 A TRP 347 n 6 TRP 347 A CYS 348 n 7 CYS 348 A ALA 349 n 8 ALA 349 A VAL 350 n 9 VAL 350 A GLY 351 n 10 GLY 351 A PRO 352 n 11 PRO 352 A GLU 353 n 12 GLU 353 A GLU 354 n 13 GLU 354 A GLN 355 n 14 GLN 355 A LYS 356 n 15 LYS 356 A LYS 357 n 16 LYS 357 A CYS 358 n 17 CYS 358 A GLN 359 n 18 GLN 359 A GLN 360 n 19 GLN 360 A TRP 361 n 20 TRP 361 A SER 362 n 21 SER 362 A GLN 363 n 22 GLN 363 A GLN 364 n 23 GLN 364 A SER 365 n 24 SER 365 A GLY 366 n 25 GLY 366 A GLN 367 n 26 GLN 367 A ASN 368 n 27 ASN 368 A VAL 369 n 28 VAL 369 A THR 370 n 29 THR 370 A CYS 371 n 30 CYS 371 A ALA 372 n 31 ALA 372 A THR 373 n 32 THR 373 A ALA 374 n 33 ALA 374 A SER 375 n 34 SER 375 A THR 376 n 35 THR 376 A THR 377 n 36 THR 377 A ASP 378 n 37 ASP 378 A ASP 379 n 38 ASP 379 A CYS 380 n 39 CYS 380 A ILE 381 n 40 ILE 381 A VAL 382 n 41 VAL 382 A LEU 383 n 42 LEU 383 A VAL 384 n 43 VAL 384 A LEU 385 n 44 LEU 385 A LYS 386 n 45 LYS 386 A GLY 387 n 46 GLY 387 A GLU 388 n 47 GLU 388 A ALA 389 n 48 ALA 389 A ASP 390 n 49 ASP 390 A ALA 391 n 50 ALA 391 A LEU 392 n 51 LEU 392 A ASN 393 n 52 ASN 393 A LEU 394 n 53 LEU 394 A ASP 395 n 54 ASP 395 A GLY 396 n 55 GLY 396 A GLY 397 n 56 GLY 397 A TYR 398 n 57 TYR 398 A ILE 399 n 58 ILE 399 A TYR 400 n 59 TYR 400 A THR 401 n 60 THR 401 A ALA 402 n 61 ALA 402 A GLY 403 n 62 GLY 403 A LYS 404 n 63 LYS 404 A CYS 405 n 64 CYS 405 A GLY 406 n 65 GLY 406 A LEU 407 n 66 LEU 407 A VAL 408 n 67 VAL 408 A PRO 409 n 68 PRO 409 A VAL 410 n 69 VAL 410 A LEU 411 n 70 LEU 411 A ALA 412 n 71 ALA 412 A GLU 413 n 72 GLU 413 A ASN 414 n 73 ASN 414 A ARG 415 n 74 ARG 415 A LYS 416 n 75 LYS 416 A SER 417 n 76 SER 417 A SER 418 n 77 SER 418 A LYS 419 n 78 LYS 419 A HIS 420 n 79 HIS 420 A SER 421 n 80 SER 421 A SER 422 n 81 SER 422 A LEU 423 n 82 LEU 423 A ASP 424 n 83 ASP 424 A CYS 425 n 84 CYS 425 A VAL 426 n 85 VAL 426 A LEU 427 n 86 LEU 427 A ARG 428 n 87 ARG 428 A PRO 429 n 88 PRO 429 A THR 430 n 89 THR 430 A GLU 431 n 90 GLU 431 A GLY 432 n 91 GLY 432 A TYR 433 n 92 TYR 433 A LEU 434 n 93 LEU 434 A ALA 435 n 94 ALA 435 A VAL 436 n 95 VAL 436 A ALA 437 n 96 ALA 437 A VAL 438 n 97 VAL 438 A VAL 439 n 98 VAL 439 A LYS 440 n 99 LYS 440 A LYS 441 n 100 LYS 441 A ALA 442 n 101 ALA 442 A ASN 443 n 102 ASN 443 A GLU 444 n 103 GLU 444 A GLY 445 n 104 GLY 445 A LEU 446 n 105 LEU 446 A THR 447 n 106 THR 447 A TRP 448 n 107 TRP 448 A ASN 449 n 108 ASN 449 A SER 450 n 109 SER 450 A LEU 451 n 110 LEU 451 A LYS 452 n 111 LYS 452 A ASP 453 n 112 ASP 453 A LYS 454 n 113 LYS 454 A LYS 455 n 114 LYS 455 A SER 456 n 115 SER 456 A CYS 457 n 116 CYS 457 A HIS 458 n 117 HIS 458 A THR 459 n 118 THR 459 A ALA 460 n 119 ALA 460 A VAL 461 n 120 VAL 461 A ASP 462 n 121 ASP 462 A ARG 463 n 122 ARG 463 A THR 464 n 123 THR 464 A ALA 465 n 124 ALA 465 A GLY 466 n 125 GLY 466 A TRP 467 n 126 TRP 467 A ASN 468 n 127 ASN 468 A ILE 469 n 128 ILE 469 A PRO 470 n 129 PRO 470 A MET 471 n 130 MET 471 A GLY 472 n 131 GLY 472 A LEU 473 n 132 LEU 473 A ILE 474 n 133 ILE 474 A VAL 475 n 134 VAL 475 A ASN 476 n 135 ASN 476 A GLN 477 n 136 GLN 477 A THR 478 n 137 THR 478 A GLY 479 n 138 GLY 479 A SER 480 n 139 SER 480 A CYS 481 n 140 CYS 481 A ALA 482 n 141 ALA 482 A PHE 483 n 142 PHE 483 A ASP 484 n 143 ASP 484 A GLU 485 n 144 GLU 485 A PHE 486 n 145 PHE 486 A PHE 487 n 146 PHE 487 A SER 488 n 147 SER 488 A GLN 489 n 148 GLN 489 A SER 490 n 149 SER 490 A CYS 491 n 150 CYS 491 A ALA 492 n 151 ALA 492 A PRO 493 n 152 PRO 493 A GLY 494 n 153 GLY 494 A ALA 495 n 154 ALA 495 A ASP 496 n 155 ASP 496 A PRO 497 n 156 PRO 497 A LYS 498 n 157 LYS 498 A SER 499 n 158 SER 499 A ARG 500 n 159 ARG 500 A LEU 501 n 160 LEU 501 A CYS 502 n 161 CYS 502 A ALA 503 n 162 ALA 503 A LEU 504 n 163 LEU 504 A CYS 505 n 164 CYS 505 A ALA 506 n 165 ALA 506 A GLY 507 n 166 GLY 507 A ASP 508 n 167 ASP 508 A ASP 509 n 168 ASP 509 A GLN 510 n 169 GLN 510 A GLY 511 n 170 GLY 511 A LEU 512 n 171 LEU 512 A ASP 513 n 172 ASP 513 A LYS 514 n 173 LYS 514 A CYS 515 n 174 CYS 515 A VAL 516 n 175 VAL 516 A PRO 517 n 176 PRO 517 A ASN 518 n 177 ASN 518 A SER 519 n 178 SER 519 A LYS 520 n 179 LYS 520 A GLU 521 n 180 GLU 521 A LYS 522 n 181 LYS 522 A TYR 523 n 182 TYR 523 A TYR 524 n 183 TYR 524 A GLY 525 n 184 GLY 525 A TYR 526 n 185 TYR 526 A THR 527 n 186 THR 527 A GLY 528 n 187 GLY 528 A ALA 529 n 188 ALA 529 A PHE 530 n 189 PHE 530 A ARG 531 n 190 ARG 531 A CYS 532 n 191 CYS 532 A LEU 533 n 192 LEU 533 A ALA 534 n 193 ALA 534 A GLU 535 n 194 GLU 535 A ASP 536 n 195 ASP 536 A VAL 537 n 196 VAL 537 A GLY 538 n 197 GLY 538 A ASP 539 n 198 ASP 539 A VAL 540 n 199 VAL 540 A ALA 541 n 200 ALA 541 A PHE 542 n 201 PHE 542 A VAL 543 n 202 VAL 543 A LYS 544 n 203 LYS 544 A ASN 545 n 204 ASN 545 A ASP 546 n 205 ASP 546 A THR 547 n 206 THR 547 A VAL 548 n 207 VAL 548 A TRP 549 n 208 TRP 549 A GLU 550 n 209 GLU 550 A ASN 551 n 210 ASN 551 A THR 552 n 211 THR 552 A ASN 553 n 212 ASN 553 A GLY 554 n 213 GLY 554 A GLU 555 n 214 GLU 555 A SER 556 n 215 SER 556 A THR 557 n 216 THR 557 A ALA 558 n 217 ALA 558 A ASP 559 n 218 ASP 559 A TRP 560 n 219 TRP 560 A ALA 561 n 220 ALA 561 A LYS 562 n 221 LYS 562 A ASN 563 n 222 ASN 563 A LEU 564 n 223 LEU 564 A LYS 565 n 224 LYS 565 A ARG 566 n 225 ARG 566 A GLU 567 n 226 GLU 567 A ASP 568 n 227 ASP 568 A PHE 569 n 228 PHE 569 A ARG 570 n 229 ARG 570 A LEU 571 n 230 LEU 571 A LEU 572 n 231 LEU 572 A CYS 573 n 232 CYS 573 A LEU 574 n 233 LEU 574 A ASP 575 n 234 ASP 575 A GLY 576 n 235 GLY 576 A THR 577 n 236 THR 577 A ARG 578 n 237 ARG 578 A LYS 579 n 238 LYS 579 A PRO 580 n 239 PRO 580 A VAL 581 n 240 VAL 581 A THR 582 n 241 THR 582 A GLU 583 n 242 GLU 583 A ALA 584 n 243 ALA 584 A GLN 585 n 244 GLN 585 A SER 586 n 245 SER 586 A CYS 587 n 246 CYS 587 A HIS 588 n 247 HIS 588 A LEU 589 n 248 LEU 589 A ALA 590 n 249 ALA 590 A VAL 591 n 250 VAL 591 A ALA 592 n 251 ALA 592 A PRO 593 n 252 PRO 593 A ASN 594 n 253 ASN 594 A HIS 595 n 254 HIS 595 A ALA 596 n 255 ALA 596 A VAL 597 n 256 VAL 597 A VAL 598 n 257 VAL 598 A SER 599 n 258 SER 599 A ARG 600 n 259 ARG 600 A SER 601 n 260 SER 601 A ASP 602 n 261 ASP 602 A ARG 603 n 262 ARG 603 A ALA 604 n 263 ALA 604 A ALA 605 n 264 ALA 605 A HIS 606 n 265 HIS 606 A VAL 607 n 266 VAL 607 A GLU 608 n 267 GLU 608 A GLN 609 n 268 GLN 609 A VAL 610 n 269 VAL 610 A LEU 611 n 270 LEU 611 A LEU 612 n 271 LEU 612 A HIS 613 n 272 HIS 613 A GLN 614 n 273 GLN 614 A GLN 615 n 274 GLN 615 A ALA 616 n 275 ALA 616 A LEU 617 n 276 LEU 617 A PHE 618 n 277 PHE 618 A GLY 619 n 278 GLY 619 A LYS 620 n 279 LYS 620 A ASN 621 n 280 ASN 621 A GLY 622 n 281 GLY 622 A LYS 623 n 282 LYS 623 A ASN 624 n 283 ASN 624 A CYS 625 n 284 CYS 625 A PRO 626 n 285 PRO 626 A ASP 627 n 286 ASP 627 A LYS 628 n 287 LYS 628 A PHE 629 n 288 PHE 629 A CYS 630 n 289 CYS 630 A LEU 631 n 290 LEU 631 A PHE 632 n 291 PHE 632 A LYS 633 n 292 LYS 633 A SER 634 n 293 SER 634 A GLU 635 n 294 GLU 635 A THR 636 n 295 THR 636 A LYS 637 n 296 LYS 637 A ASN 638 n 297 ASN 638 A LEU 639 n 298 LEU 639 A LEU 640 n 299 LEU 640 A PHE 641 n 300 PHE 641 A ASN 642 n 301 ASN 642 A ASP 643 n 302 ASP 643 A ASN 644 n 303 ASN 644 A THR 645 n 304 THR 645 A GLU 646 n 305 GLU 646 A CYS 647 n 306 CYS 647 A LEU 648 n 307 LEU 648 A ALA 649 n 308 ALA 649 A LYS 650 n 309 LYS 650 A LEU 651 n 310 LEU 651 A GLY 652 n 311 GLY 652 A GLY 653 n 312 GLY 653 A ARG 654 n 313 ARG 654 A PRO 655 n 314 PRO 655 A THR 656 n 315 THR 656 A TYR 657 n 316 TYR 657 A GLU 658 n 317 GLU 658 A GLU 659 n 318 GLU 659 A TYR 660 n 319 TYR 660 A LEU 661 n 320 LEU 661 A GLY 662 n 321 GLY 662 A THR 663 n 322 THR 663 A GLU 664 n 323 GLU 664 A TYR 665 n 324 TYR 665 A VAL 666 n 325 VAL 666 A THR 667 n 326 THR 667 A ALA 668 n 327 ALA 668 A ILE 669 n 328 ILE 669 A ALA 670 n 329 ALA 670 A ASN 671 n 330 ASN 671 A LEU 672 n 331 LEU 672 A LYS 673 n 332 LYS 673 A LYS 674 n 333 LYS 674 A CYS 675 n 334 CYS 675 A SER 676 n 335 SER 676 A n 336 677 A n 337 678 A n 338 679 A n 339 680 A LEU 681 n 340 LEU 681 A GLU 682 n 341 GLU 682 A ALA 683 n 342 ALA 683 A CYS 684 n 343 CYS 684 A ALA 685 n 344 ALA 685 A PHE 686 n 345 PHE 686 A author_defined_assembly 1 monomeric A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 A TYR 433 A OH TYR 92 1_555 89.2 A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 A TYR 526 A OH TYR 185 1_555 172.2 A TYR 433 A OH TYR 92 1_555 A FE 1687 H FE FE 1_555 A TYR 526 A OH TYR 185 1_555 97.5 A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 A HIS 595 A NE2 HIS 254 1_555 87.3 A TYR 433 A OH TYR 92 1_555 A FE 1687 H FE FE 1_555 A HIS 595 A NE2 HIS 254 1_555 100.3 A TYR 526 A OH TYR 185 1_555 A FE 1687 H FE FE 1_555 A HIS 595 A NE2 HIS 254 1_555 87.5 A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O1 CO3 1_555 87.1 A TYR 433 A OH TYR 92 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O1 CO3 1_555 158.1 A TYR 526 A OH TYR 185 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O1 CO3 1_555 88.0 A HIS 595 A NE2 HIS 254 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O1 CO3 1_555 101.1 A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 89.2 A TYR 433 A OH TYR 92 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 93.1 A TYR 526 A OH TYR 185 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 94.4 A HIS 595 A NE2 HIS 254 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 166.1 A CO3 1999 I O1 CO3 1_555 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 65.3 A HIS 588 A NE2 HIS 247 1_555 A ZN 1102 G ZN ZN 1_555 A HOH 2254 K O HOH 1_555 116.8 A HIS 588 A NE2 HIS 247 1_555 A ZN 1102 G ZN ZN 1_555 A HOH 2289 K O HOH 1_555 95.2 A HOH 2254 K O HOH 1_555 A ZN 1102 G ZN ZN 1_555 A HOH 2289 K O HOH 1_555 133.6 A GLU 659 A OE1 GLU 318 1_555 A ZN 1101 F ZN ZN 1_555 A GLU 659 A OE2 GLU 318 1_555 59.8 A GLU 659 A OE1 GLU 318 1_555 A ZN 1101 F ZN ZN 1_555 A HOH 2194 K O HOH 1_555 100.6 A GLU 659 A OE2 GLU 318 1_555 A ZN 1101 F ZN ZN 1_555 A HOH 2194 K O HOH 1_555 97.5 A ASN 368 GLYCOSYLATION SITE A ASN 27 ASN A ASN 476 GLYCOSYLATION SITE A ASN 135 ASN A ASN 545 GLYCOSYLATION SITE A ASN 204 ASN 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N TRP 347 A N TRP 6 A O THR 370 A O THR 29 A N LEU 394 A N LEU 53 A O ALA 596 A O ALA 255 A O VAL 597 A O VAL 256 A N VAL 410 A N VAL 69 A N ALA 412 A N ALA 71 A O ALA 649 A O ALA 308 A O CYS 491 A O CYS 150 A N HIS 458 A N HIS 117 A N CYS 457 A N CYS 116 A O PHE 542 A O PHE 201 A O VAL 543 A O VAL 202 A N VAL 436 A N VAL 95 A N VAL 439 A N VAL 98 A O ARG 570 A O ARG 229 A N LEU 571 A N LEU 230 A O LYS 579 A O LYS 238 A O CYS 491 A O CYS 150 A N HIS 458 A N HIS 117 A N CYS 457 A N CYS 116 A O PHE 542 A O PHE 201 A O VAL 543 A O VAL 202 A N VAL 436 A N VAL 95 A N TYR 433 A N TYR 92 A O ALA 592 A O ALA 251 1 A THR 677 A THR 336 1 Y 1 A SER 678 A SER 337 1 Y 1 A PRO 679 A PRO 338 1 Y 1 A LEU 680 A LEU 339 1 Y 1 D C1 GLC 1 PLANAR 1 D C2 GLC 1 PLANAR 1 D C3 GLC 1 PLANAR 1 D C4 GLC 1 PLANAR 1 D C5 GLC 1 PLANAR 1 D C1 GLC 2 PLANAR 1 D C2 GLC 2 PLANAR 1 D C3 GLC 2 PLANAR 1 D C4 GLC 2 PLANAR 1 D C5 GLC 2 PLANAR 1 6.06 0.90 118.30 124.36 A A A CB CG OD2 ASP ASP ASP 378 378 378 N 1 5.51 0.90 118.30 123.81 A A A CB CG OD2 ASP ASP ASP 424 424 424 N 1 5.53 0.90 118.30 123.83 A A A CB CG OD2 ASP ASP ASP 536 536 536 N 1 -14.27 1.40 111.70 97.43 A A A CA N CD PRO PRO PRO 655 655 655 N 1 A SER 417 -107.13 -169.74 1 A SER 418 -136.24 -48.51 1 A ASP 462 80.58 0.91 1 A TRP 467 -141.24 -59.88 1 A ASP 509 -53.37 -3.09 1 A VAL 543 -140.72 -159.08 1 A SER 634 -175.44 36.14 1 A LEU 640 71.71 -46.50 1 A ALA 683 -140.47 -104.33 1 A CYS 684 90.35 104.36 38.565 0.70 0.00 -1.10 -0.85 0.00 -0.52 0.966 0.946 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2108 0.16902 0.18 0.17159 2.03 63.25 806 25250 24409 3.2 97.55 4.505 0.123 RANDOM 1 THROUGHOUT 0 0 MOLECULAR REPLACEMENT 0.172 0.154 0.80 0.80 1.40 2B6D MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 2.03 63.25 291 3034 138 0 2605 0.014 0.021 2805 1.746 2.009 3817 4.685 3.000 339 20.164 15.000 466 0.115 0.200 448 0.006 0.020 2033 0.245 0.300 1277 0.177 0.500 317 0.182 0.500 6 0.279 0.300 34 0.892 0.500 7 1.063 1.500 1693 2.012 2.000 2700 2.881 3.000 1112 4.917 4.500 1117 0.309 0.224 2.083 60 1751 20 2.03 63.25 2DXY 25250 24409 0 0 1 97.6 2.03 2.10 1 95.1 refinement REFMAC 5.0 data collection MAR345 345DTB data reduction AUTOMAR phasing AMoRE Structure of the complex of C-terminal lobe of bovine lactoferrin with trehalose at 2.0 A resolution 1 N N 2 N N 3 N N 4 N N 5 N N 6 N N 6 N N 7 N N 8 N N 9 N N 10 N N A GLY 351 A GLY 10 HELX_P A SER 365 A SER 24 1 1 15 A THR 376 A THR 35 HELX_P A LYS 386 A LYS 45 1 2 11 A ASP 395 A ASP 54 HELX_P A CYS 405 A CYS 64 1 3 11 A ASP 424 A ASP 83 HELX_P A ARG 428 A ARG 87 5 4 5 A THR 447 A THR 106 HELX_P A LEU 451 A LEU 110 5 5 5 A TRP 467 A TRP 126 HELX_P A GLY 479 A GLY 138 1 6 13 A ALA 482 A ALA 141 HELX_P A PHE 487 A PHE 146 1 7 6 A SER 499 A SER 158 HELX_P A ALA 503 A ALA 162 5 8 5 A TYR 524 A TYR 183 HELX_P A GLU 535 A GLU 194 1 9 12 A ASN 545 A ASN 204 HELX_P A ASN 551 A ASN 210 1 10 7 A LYS 565 A LYS 224 HELX_P A GLU 567 A GLU 226 5 11 3 A THR 582 A THR 241 HELX_P A CYS 587 A CYS 246 5 12 6 A ARG 603 A ARG 262 HELX_P A GLY 619 A GLY 278 1 13 17 A THR 656 A THR 315 HELX_P A GLY 662 A GLY 321 1 14 7 A GLY 662 A GLY 321 HELX_P A LYS 674 A LYS 333 1 15 13 disulf 1.988 A CYS 348 A SG CYS 7 1_555 A CYS 380 A SG CYS 39 1_555 disulf 2.010 A CYS 358 A SG CYS 17 1_555 A CYS 371 A SG CYS 30 1_555 disulf 2.051 A CYS 405 A SG CYS 64 1_555 A CYS 684 A SG CYS 343 1_555 disulf 2.015 A CYS 425 A SG CYS 84 1_555 A CYS 647 A SG CYS 306 1_555 disulf 2.029 A CYS 457 A SG CYS 116 1_555 A CYS 532 A SG CYS 191 1_555 disulf 2.024 A CYS 481 A SG CYS 140 1_555 A CYS 675 A SG CYS 334 1_555 disulf 2.003 A CYS 491 A SG CYS 150 1_555 A CYS 505 A SG CYS 164 1_555 disulf 2.013 A CYS 502 A SG CYS 161 1_555 A CYS 515 A SG CYS 174 1_555 disulf 2.040 A CYS 573 A SG CYS 232 1_555 A CYS 587 A SG CYS 246 1_555 disulf 2.005 A CYS 625 A SG CYS 284 1_555 A CYS 630 A SG CYS 289 1_555 covale 1.438 one N-Glycosylation A ASN 368 A ND2 ASN 27 1_555 A NAG 1001 E C1 NAG 1_555 covale 1.504 one N-Glycosylation A ASN 476 A ND2 ASN 135 1_555 B NAG 1 B C1 NAG 1_555 covale 1.460 one N-Glycosylation A ASN 545 A ND2 ASN 204 1_555 C NAG 1 C C1 NAG 1_555 covale 1.462 both B NAG 1 B O4 NAG 1_555 B NAG 2 B C1 NAG 1_555 covale 1.465 both B NAG 2 B O4 NAG 1_555 B BMA 3 B C1 BMA 1_555 covale 1.449 both C NAG 1 C O4 NAG 1_555 C NAG 2 C C1 NAG 1_555 covale 1.465 both C NAG 2 C O4 NAG 1_555 C MAN 3 C C1 MAN 1_555 covale 1.453 both C MAN 3 C O4 MAN 1_555 C BMA 4 C C1 BMA 1_555 covale 1.460 both sing D GLC 1 D C1 GLC 1_555 D GLC 2 D O1 GLC 1_555 metalc 2.052 A ASP 395 A OD1 ASP 54 1_555 A FE 1687 H FE FE 1_555 metalc 1.970 A TYR 433 A OH TYR 92 1_555 A FE 1687 H FE FE 1_555 metalc 1.854 A TYR 526 A OH TYR 185 1_555 A FE 1687 H FE FE 1_555 metalc 2.011 A HIS 588 A NE2 HIS 247 1_555 A ZN 1102 G ZN ZN 1_555 metalc 2.165 A HIS 595 A NE2 HIS 254 1_555 A FE 1687 H FE FE 1_555 metalc 2.332 A GLU 659 A OE1 GLU 318 1_555 A ZN 1101 F ZN ZN 1_555 metalc 2.059 A GLU 659 A OE2 GLU 318 1_555 A ZN 1101 F ZN ZN 1_555 metalc 1.839 A ZN 1101 F ZN ZN 1_555 A HOH 2194 K O HOH 1_555 metalc 1.892 A ZN 1102 G ZN ZN 1_555 A HOH 2254 K O HOH 1_555 metalc 1.910 A ZN 1102 G ZN ZN 1_555 A HOH 2289 K O HOH 1_555 metalc 2.132 A FE 1687 H FE FE 1_555 A CO3 1999 I O1 CO3 1_555 metalc 1.945 A FE 1687 H FE FE 1_555 A CO3 1999 I O2 CO3 1_555 METAL BINDING PROTEIN C-lobe, Lactoferrin, Complex, METAL BINDING PROTEIN A CYS 625 A CYS 284 1 A PRO 626 A PRO 285 6.16 TRFL_BOVIN UNP 1 361 P24627 YTRVVWCAVGPEEQKKCQQWSQQSGQNVTCATASTTDDCIVLVLKGEADALNLDGGYIYTAGKCGLVPVLAENRKSSKHS SLDCVLRPTEGYLAVAVVKKANEGLTWNSLKDKKSCHTAVDRTAGWNIPMGLIVNQTGSCAFDEFFSQSCAPGADPKSRL CALCAGDDQGLDKCVPNSKEKYYGYTGAFRCLAEDVGDVAFVKNDTVWENTNGESTADWAKNLNREDFRLLCLDGTRKPV TEAQSCHLAVAPNHAVVSRSDRAAHVKQVLLHQQALFGKNGKNCPDKFCLFKSETKNLLFNDNTECLAKLGGRPTYEEYL GTEYVTAIANLKKCSTSPLLEACAF 361 705 2DXY 342 686 P24627 A 1 1 345 1 ASN SEE REMARK 999 LYS 565 2DXY A P24627 UNP 584 224 1 LYS SEE REMARK 999 GLU 608 2DXY A P24627 UNP 627 267 2 4 6 5 parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A VAL 345 A VAL 4 A VAL 350 A VAL 9 A VAL 369 A VAL 28 A ALA 374 A ALA 33 A ALA 391 A ALA 50 A LEU 394 A LEU 53 A ALA 596 A ALA 255 A ARG 600 A ARG 259 A LEU 407 A LEU 66 A ASN 414 A ASN 73 A CYS 647 A CYS 306 A LYS 650 A LYS 309 A SER 490 A SER 149 A CYS 491 A CYS 150 A SER 456 A SER 115 A HIS 458 A HIS 117 A VAL 540 A VAL 199 A LYS 544 A LYS 203 A TYR 433 A TYR 92 A LYS 440 A LYS 99 A PHE 569 A PHE 228 A LEU 572 A LEU 231 A ARG 578 A ARG 237 A PRO 580 A PRO 239 A SER 490 A SER 149 A CYS 491 A CYS 150 A SER 456 A SER 115 A HIS 458 A HIS 117 A VAL 540 A VAL 199 A LYS 544 A LYS 203 A TYR 433 A TYR 92 A LYS 440 A LYS 99 A ALA 590 A ALA 249 A ALA 592 A ALA 251 4 P 1 21 1