0.013334
0.007698
0.000000
0.000000
0.015397
0.000000
0.000000
0.000000
0.006510
0.000000
0.000000
0.000000
Jacobson, F.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
9
90.000
90.000
120.000
74.996
74.996
153.611
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cu 2
63.546
COPPER (II) ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CU
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
N
N
275
S
C
N
276
N
C
N
277
N
O
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
N
N
292
S
C
N
293
N
C
N
294
N
O
N
295
N
C
N
296
N
O
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
N
N
306
S
C
N
307
N
C
N
308
N
O
N
309
R
C
N
310
N
O
N
311
N
C
N
312
N
O
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
N
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
C
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
N
N
350
S
C
N
351
N
C
N
352
N
O
N
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
Y
359
N
C
N
360
N
O
N
361
N
O
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
N
N
374
S
C
N
375
N
C
N
376
N
O
N
377
N
C
N
378
N
C
N
379
N
C
N
380
N
O
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
US
J.Biol.Chem.
JBCHA3
0071
0021-9258
282
6347
6355
10.1074/jbc.M605746200
17148448
pH Dependence of Copper Geometry, Reduction Potential, and Nitrite Affinity in Nitrite Reductase
2007
10.2210/pdb2dy2/pdb
pdb_00002dy2
100
1
CCD
2005-11-12
MARRESEARCH
SINGLE WAVELENGTH
M
x-ray
1
1.115
1.0
I911-3
MAX II
1.115
SYNCHROTRON
MAX II BEAMLINE I911-3
35911.645
Copper-containing nitrite reductase
1.7.2.1
1
man
polymer
63.546
COPPER (II) ION
2
syn
non-polymer
18.015
water
72
nat
water
Cu-NIR
no
no
LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT
MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR
YDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRD
SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLM
EQVVAPVGL
LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT
MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR
YDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRD
SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLM
EQVVAPVGL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Rhodobacter
2.4.3
Escherichia
Escherichia coli
sample
nirK
1063
Rhodobacter sphaeroides
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pET17b
1
2.31
46.83
VAPOR DIFFUSION, HANGING DROP
6.0
Tris, MgCl2, PEG 1500, pH 6.0, vapor diffusion, hanging drop, temperature 298K
298
diffrn_source
pdbx_unobs_or_zero_occ_atoms
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
pdbx_unobs_or_zero_occ_atoms
struct_conn
struct_site
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Advisory
Data collection
Advisory
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-12-05
1
1
2008-04-30
1
2
2011-07-13
1
3
2018-05-23
1
4
2023-10-25
_diffrn_source.pdbx_synchrotron_site
_diffrn_source.pdbx_wavelength
_diffrn_source.pdbx_wavelength_list
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
The same protein with bound nitrite, pH 6.0
The same protein with bound nitrite, pH 8.4
The same protein at pH 8.4
PDBJ
Y
PDBJ
2006-09-05
REL
REL
CU
COPPER (II) ION
HOH
water
1ZV2
PDB ENTRY 1ZV2
PDB
experimental model
CU
401
2
CU
CU
401
A
CU
402
2
CU
CU
402
A
HOH
1
3
HOH
HOH
403
A
HOH
2
3
HOH
HOH
404
A
HOH
3
3
HOH
HOH
405
A
HOH
4
3
HOH
HOH
406
A
HOH
5
3
HOH
HOH
407
A
HOH
6
3
HOH
HOH
408
A
HOH
7
3
HOH
HOH
409
A
HOH
8
3
HOH
HOH
410
A
HOH
9
3
HOH
HOH
411
A
HOH
10
3
HOH
HOH
412
A
HOH
11
3
HOH
HOH
413
A
HOH
12
3
HOH
HOH
414
A
HOH
13
3
HOH
HOH
415
A
HOH
14
3
HOH
HOH
416
A
HOH
15
3
HOH
HOH
417
A
HOH
16
3
HOH
HOH
418
A
HOH
17
3
HOH
HOH
419
A
HOH
18
3
HOH
HOH
420
A
HOH
19
3
HOH
HOH
421
A
HOH
20
3
HOH
HOH
422
A
HOH
21
3
HOH
HOH
423
A
HOH
22
3
HOH
HOH
424
A
HOH
23
3
HOH
HOH
425
A
HOH
24
3
HOH
HOH
426
A
HOH
25
3
HOH
HOH
427
A
HOH
26
3
HOH
HOH
428
A
HOH
27
3
HOH
HOH
429
A
HOH
28
3
HOH
HOH
430
A
HOH
29
3
HOH
HOH
431
A
HOH
30
3
HOH
HOH
432
A
HOH
31
3
HOH
HOH
433
A
HOH
32
3
HOH
HOH
434
A
HOH
33
3
HOH
HOH
435
A
HOH
34
3
HOH
HOH
436
A
HOH
35
3
HOH
HOH
437
A
HOH
36
3
HOH
HOH
438
A
HOH
37
3
HOH
HOH
439
A
HOH
38
3
HOH
HOH
440
A
HOH
39
3
HOH
HOH
441
A
HOH
40
3
HOH
HOH
442
A
HOH
41
3
HOH
HOH
443
A
HOH
42
3
HOH
HOH
444
A
HOH
43
3
HOH
HOH
445
A
HOH
44
3
HOH
HOH
446
A
HOH
45
3
HOH
HOH
447
A
HOH
46
3
HOH
HOH
448
A
HOH
47
3
HOH
HOH
449
A
HOH
48
3
HOH
HOH
450
A
HOH
49
3
HOH
HOH
451
A
HOH
50
3
HOH
HOH
452
A
HOH
51
3
HOH
HOH
453
A
HOH
52
3
HOH
HOH
454
A
HOH
53
3
HOH
HOH
455
A
HOH
54
3
HOH
HOH
456
A
HOH
55
3
HOH
HOH
457
A
HOH
56
3
HOH
HOH
458
A
HOH
57
3
HOH
HOH
459
A
HOH
58
3
HOH
HOH
460
A
HOH
59
3
HOH
HOH
461
A
HOH
60
3
HOH
HOH
462
A
HOH
61
3
HOH
HOH
463
A
HOH
62
3
HOH
HOH
464
A
HOH
63
3
HOH
HOH
465
A
HOH
64
3
HOH
HOH
466
A
HOH
65
3
HOH
HOH
467
A
HOH
66
3
HOH
HOH
468
A
HOH
67
3
HOH
HOH
469
A
HOH
68
3
HOH
HOH
470
A
HOH
69
3
HOH
HOH
471
A
HOH
70
3
HOH
HOH
472
A
HOH
71
3
HOH
HOH
473
A
HOH
72
3
HOH
HOH
474
A
LEU
44
n
1
LEU
44
A
PRO
45
n
2
PRO
45
A
ARG
46
n
3
ARG
46
A
VAL
47
n
4
VAL
47
A
LYS
48
n
5
LYS
48
A
HIS
49
n
6
HIS
49
A
THR
50
n
7
THR
50
A
LEU
51
n
8
LEU
51
A
VAL
52
n
9
VAL
52
A
PRO
53
n
10
PRO
53
A
PRO
54
n
11
PRO
54
A
PRO
55
n
12
PRO
55
A
PHE
56
n
13
PHE
56
A
ALA
57
n
14
ALA
57
A
HIS
58
n
15
HIS
58
A
ALA
59
n
16
ALA
59
A
HIS
60
n
17
HIS
60
A
GLU
61
n
18
GLU
61
A
GLN
62
n
19
GLN
62
A
VAL
63
n
20
VAL
63
A
ALA
64
n
21
ALA
64
A
ALA
65
n
22
ALA
65
A
SER
66
n
23
SER
66
A
GLY
67
n
24
GLY
67
A
PRO
68
n
25
PRO
68
A
VAL
69
n
26
VAL
69
A
ILE
70
n
27
ILE
70
A
ASN
71
n
28
ASN
71
A
GLU
72
n
29
GLU
72
A
PHE
73
n
30
PHE
73
A
GLU
74
n
31
GLU
74
A
MET
75
n
32
MET
75
A
ARG
76
n
33
ARG
76
A
ILE
77
n
34
ILE
77
A
ILE
78
n
35
ILE
78
A
GLU
79
n
36
GLU
79
A
LYS
80
n
37
LYS
80
A
GLU
81
n
38
GLU
81
A
VAL
82
n
39
VAL
82
A
GLN
83
n
40
GLN
83
A
LEU
84
n
41
LEU
84
A
ASP
85
n
42
ASP
85
A
GLU
86
n
43
GLU
86
A
ASP
87
n
44
ASP
87
A
ALA
88
n
45
ALA
88
A
TYR
89
n
46
TYR
89
A
LEU
90
n
47
LEU
90
A
GLN
91
n
48
GLN
91
A
ALA
92
n
49
ALA
92
A
MET
93
n
50
MET
93
A
THR
94
n
51
THR
94
A
PHE
95
n
52
PHE
95
A
ASP
96
n
53
ASP
96
A
GLY
97
n
54
GLY
97
A
SER
98
n
55
SER
98
A
ILE
99
n
56
ILE
99
A
PRO
100
n
57
PRO
100
A
GLY
101
n
58
GLY
101
A
PRO
102
n
59
PRO
102
A
LEU
103
n
60
LEU
103
A
MET
104
n
61
MET
104
A
ILE
105
n
62
ILE
105
A
VAL
106
n
63
VAL
106
A
HIS
107
n
64
HIS
107
A
GLU
108
n
65
GLU
108
A
GLY
109
n
66
GLY
109
A
ASP
110
n
67
ASP
110
A
TYR
111
n
68
TYR
111
A
VAL
112
n
69
VAL
112
A
GLU
113
n
70
GLU
113
A
LEU
114
n
71
LEU
114
A
THR
115
n
72
THR
115
A
LEU
116
n
73
LEU
116
A
ILE
117
n
74
ILE
117
A
ASN
118
n
75
ASN
118
A
PRO
119
n
76
PRO
119
A
PRO
120
n
77
PRO
120
A
GLU
121
n
78
GLU
121
A
ASN
122
n
79
ASN
122
A
THR
123
n
80
THR
123
A
MET
124
n
81
MET
124
A
PRO
125
n
82
PRO
125
A
HIS
126
n
83
HIS
126
A
ASN
127
n
84
ASN
127
A
ILE
128
n
85
ILE
128
A
ASP
129
n
86
ASP
129
A
PHE
130
n
87
PHE
130
A
HIS
131
n
88
HIS
131
A
ALA
132
n
89
ALA
132
A
ALA
133
n
90
ALA
133
A
THR
134
n
91
THR
134
A
GLY
135
n
92
GLY
135
A
ALA
136
n
93
ALA
136
A
LEU
137
n
94
LEU
137
A
GLY
138
n
95
GLY
138
A
GLY
139
n
96
GLY
139
A
GLY
140
n
97
GLY
140
A
GLY
141
n
98
GLY
141
A
LEU
142
n
99
LEU
142
A
THR
143
n
100
THR
143
A
LEU
144
n
101
LEU
144
A
ILE
145
n
102
ILE
145
A
ASN
146
n
103
ASN
146
A
PRO
147
n
104
PRO
147
A
GLY
148
n
105
GLY
148
A
GLU
149
n
106
GLU
149
A
LYS
150
n
107
LYS
150
A
VAL
151
n
108
VAL
151
A
VAL
152
n
109
VAL
152
A
LEU
153
n
110
LEU
153
A
ARG
154
n
111
ARG
154
A
PHE
155
n
112
PHE
155
A
LYS
156
n
113
LYS
156
A
ALA
157
n
114
ALA
157
A
THR
158
n
115
THR
158
A
ARG
159
n
116
ARG
159
A
ALA
160
n
117
ALA
160
A
GLY
161
n
118
GLY
161
A
ALA
162
n
119
ALA
162
A
PHE
163
n
120
PHE
163
A
VAL
164
n
121
VAL
164
A
TYR
165
n
122
TYR
165
A
HIS
166
n
123
HIS
166
A
CYS
167
n
124
CYS
167
A
ALA
168
n
125
ALA
168
A
PRO
169
n
126
PRO
169
A
GLY
170
n
127
GLY
170
A
GLY
171
n
128
GLY
171
A
PRO
172
n
129
PRO
172
A
MET
173
n
130
MET
173
A
ILE
174
n
131
ILE
174
A
PRO
175
n
132
PRO
175
A
TRP
176
n
133
TRP
176
A
HIS
177
n
134
HIS
177
A
VAL
178
n
135
VAL
178
A
VAL
179
n
136
VAL
179
A
SER
180
n
137
SER
180
A
GLY
181
n
138
GLY
181
A
MET
182
n
139
MET
182
A
ALA
183
n
140
ALA
183
A
GLY
184
n
141
GLY
184
A
CYS
185
n
142
CYS
185
A
ILE
186
n
143
ILE
186
A
MET
187
n
144
MET
187
A
VAL
188
n
145
VAL
188
A
LEU
189
n
146
LEU
189
A
PRO
190
n
147
PRO
190
A
ARG
191
n
148
ARG
191
A
ASP
192
n
149
ASP
192
A
GLY
193
n
150
GLY
193
A
LEU
194
n
151
LEU
194
A
LYS
195
n
152
LYS
195
A
ASP
196
n
153
ASP
196
A
HIS
197
n
154
HIS
197
A
GLU
198
n
155
GLU
198
A
GLY
199
n
156
GLY
199
A
LYS
200
n
157
LYS
200
A
PRO
201
n
158
PRO
201
A
VAL
202
n
159
VAL
202
A
ARG
203
n
160
ARG
203
A
TYR
204
n
161
TYR
204
A
ASP
205
n
162
ASP
205
A
THR
206
n
163
THR
206
A
VAL
207
n
164
VAL
207
A
TYR
208
n
165
TYR
208
A
TYR
209
n
166
TYR
209
A
ILE
210
n
167
ILE
210
A
GLY
211
n
168
GLY
211
A
GLU
212
n
169
GLU
212
A
SER
213
n
170
SER
213
A
ASP
214
n
171
ASP
214
A
HIS
215
n
172
HIS
215
A
TYR
216
n
173
TYR
216
A
ILE
217
n
174
ILE
217
A
PRO
218
n
175
PRO
218
A
LYS
219
n
176
LYS
219
A
ASP
220
n
177
ASP
220
A
GLU
221
n
178
GLU
221
A
ASP
222
n
179
ASP
222
A
GLY
223
n
180
GLY
223
A
THR
224
n
181
THR
224
A
TYR
225
n
182
TYR
225
A
MET
226
n
183
MET
226
A
ARG
227
n
184
ARG
227
A
PHE
228
n
185
PHE
228
A
SER
229
n
186
SER
229
A
ASP
230
n
187
ASP
230
A
PRO
231
n
188
PRO
231
A
SER
232
n
189
SER
232
A
GLU
233
n
190
GLU
233
A
GLY
234
n
191
GLY
234
A
TYR
235
n
192
TYR
235
A
GLU
236
n
193
GLU
236
A
ASP
237
n
194
ASP
237
A
MET
238
n
195
MET
238
A
VAL
239
n
196
VAL
239
A
ALA
240
n
197
ALA
240
A
VAL
241
n
198
VAL
241
A
MET
242
n
199
MET
242
A
ASP
243
n
200
ASP
243
A
THR
244
n
201
THR
244
A
LEU
245
n
202
LEU
245
A
ILE
246
n
203
ILE
246
A
PRO
247
n
204
PRO
247
A
SER
248
n
205
SER
248
A
HIS
249
n
206
HIS
249
A
ILE
250
n
207
ILE
250
A
VAL
251
n
208
VAL
251
A
PHE
252
n
209
PHE
252
A
ASN
253
n
210
ASN
253
A
GLY
254
n
211
GLY
254
A
ALA
255
n
212
ALA
255
A
VAL
256
n
213
VAL
256
A
GLY
257
n
214
GLY
257
A
ALA
258
n
215
ALA
258
A
LEU
259
n
216
LEU
259
A
THR
260
n
217
THR
260
A
GLY
261
n
218
GLY
261
A
GLU
262
n
219
GLU
262
A
GLY
263
n
220
GLY
263
A
ALA
264
n
221
ALA
264
A
LEU
265
n
222
LEU
265
A
LYS
266
n
223
LYS
266
A
ALA
267
n
224
ALA
267
A
LYS
268
n
225
LYS
268
A
VAL
269
n
226
VAL
269
A
GLY
270
n
227
GLY
270
A
ASP
271
n
228
ASP
271
A
ASN
272
n
229
ASN
272
A
VAL
273
n
230
VAL
273
A
LEU
274
n
231
LEU
274
A
PHE
275
n
232
PHE
275
A
VAL
276
n
233
VAL
276
A
HIS
277
n
234
HIS
277
A
SER
278
n
235
SER
278
A
GLN
279
n
236
GLN
279
A
PRO
280
n
237
PRO
280
A
ASN
281
n
238
ASN
281
A
ARG
282
n
239
ARG
282
A
ASP
283
n
240
ASP
283
A
SER
284
n
241
SER
284
A
ARG
285
n
242
ARG
285
A
PRO
286
n
243
PRO
286
A
HIS
287
n
244
HIS
287
A
LEU
288
n
245
LEU
288
A
ILE
289
n
246
ILE
289
A
GLY
290
n
247
GLY
290
A
GLY
291
n
248
GLY
291
A
HIS
292
n
249
HIS
292
A
GLY
293
n
250
GLY
293
A
ASP
294
n
251
ASP
294
A
LEU
295
n
252
LEU
295
A
VAL
296
n
253
VAL
296
A
TRP
297
n
254
TRP
297
A
GLU
298
n
255
GLU
298
A
THR
299
n
256
THR
299
A
GLY
300
n
257
GLY
300
A
LYS
301
n
258
LYS
301
A
PHE
302
n
259
PHE
302
A
HIS
303
n
260
HIS
303
A
ASN
304
n
261
ASN
304
A
ALA
305
n
262
ALA
305
A
PRO
306
n
263
PRO
306
A
GLU
307
n
264
GLU
307
A
ARG
308
n
265
ARG
308
A
ASP
309
n
266
ASP
309
A
LEU
310
n
267
LEU
310
A
GLU
311
n
268
GLU
311
A
THR
312
n
269
THR
312
A
TRP
313
n
270
TRP
313
A
PHE
314
n
271
PHE
314
A
ILE
315
n
272
ILE
315
A
ARG
316
n
273
ARG
316
A
GLY
317
n
274
GLY
317
A
GLY
318
n
275
GLY
318
A
SER
319
n
276
SER
319
A
ALA
320
n
277
ALA
320
A
GLY
321
n
278
GLY
321
A
ALA
322
n
279
ALA
322
A
ALA
323
n
280
ALA
323
A
LEU
324
n
281
LEU
324
A
TYR
325
n
282
TYR
325
A
LYS
326
n
283
LYS
326
A
PHE
327
n
284
PHE
327
A
LEU
328
n
285
LEU
328
A
GLN
329
n
286
GLN
329
A
PRO
330
n
287
PRO
330
A
GLY
331
n
288
GLY
331
A
VAL
332
n
289
VAL
332
A
TYR
333
n
290
TYR
333
A
ALA
334
n
291
ALA
334
A
TYR
335
n
292
TYR
335
A
VAL
336
n
293
VAL
336
A
ASN
337
n
294
ASN
337
A
HIS
338
n
295
HIS
338
A
ASN
339
n
296
ASN
339
A
LEU
340
n
297
LEU
340
A
ILE
341
n
298
ILE
341
A
GLU
342
n
299
GLU
342
A
ALA
343
n
300
ALA
343
A
VAL
344
n
301
VAL
344
A
HIS
345
n
302
HIS
345
A
LYS
346
n
303
LYS
346
A
GLY
347
n
304
GLY
347
A
ALA
348
n
305
ALA
348
A
THR
349
n
306
THR
349
A
ALA
350
n
307
ALA
350
A
HIS
351
n
308
HIS
351
A
VAL
352
n
309
VAL
352
A
LEU
353
n
310
LEU
353
A
VAL
354
n
311
VAL
354
A
GLU
355
n
312
GLU
355
A
GLY
356
n
313
GLY
356
A
GLU
357
n
314
GLU
357
A
TRP
358
n
315
TRP
358
A
ASP
359
n
316
ASP
359
A
ASN
360
n
317
ASN
360
A
ASP
361
n
318
ASP
361
A
LEU
362
n
319
LEU
362
A
MET
363
n
320
MET
363
A
GLU
364
n
321
GLU
364
A
GLN
365
n
322
GLN
365
A
VAL
366
n
323
VAL
366
A
VAL
367
n
324
VAL
367
A
ALA
368
n
325
ALA
368
A
PRO
369
n
326
PRO
369
A
VAL
370
n
327
VAL
370
A
GLY
371
n
328
GLY
371
A
LEU
372
n
329
LEU
372
A
author_and_software_defined_assembly
PISA,PQS
3
trimeric
13600
-95
31180
A
HIS
126
A
ND1
HIS
83
1_555
A
CU
401
B
CU
CU
1_555
A
CYS
167
A
SG
CYS
124
1_555
124.7
A
HIS
126
A
ND1
HIS
83
1_555
A
CU
401
B
CU
CU
1_555
A
HIS
177
A
ND1
HIS
134
1_555
98.4
A
CYS
167
A
SG
CYS
124
1_555
A
CU
401
B
CU
CU
1_555
A
HIS
177
A
ND1
HIS
134
1_555
117.8
A
HIS
126
A
ND1
HIS
83
1_555
A
CU
401
B
CU
CU
1_555
A
MET
182
A
SD
MET
139
1_555
81.4
A
CYS
167
A
SG
CYS
124
1_555
A
CU
401
B
CU
CU
1_555
A
MET
182
A
SD
MET
139
1_555
106.1
A
HIS
177
A
ND1
HIS
134
1_555
A
CU
401
B
CU
CU
1_555
A
MET
182
A
SD
MET
139
1_555
124.5
A
HIS
131
A
NE2
HIS
88
3_665
A
CU
402
C
CU
CU
1_555
A
HIS
166
A
NE2
HIS
123
3_665
111.5
A
HIS
131
A
NE2
HIS
88
3_665
A
CU
402
C
CU
CU
1_555
A
HIS
338
A
NE2
HIS
295
1_555
106.7
A
HIS
166
A
NE2
HIS
123
3_665
A
CU
402
C
CU
CU
1_555
A
HIS
338
A
NE2
HIS
295
1_555
110.5
A
HIS
131
A
NE2
HIS
88
3_665
A
CU
402
C
CU
CU
1_555
A
HOH
474
D
O
HOH
1_555
107.2
A
HIS
166
A
NE2
HIS
123
3_665
A
CU
402
C
CU
CU
1_555
A
HOH
474
D
O
HOH
1_555
102.8
A
HIS
338
A
NE2
HIS
295
1_555
A
CU
402
C
CU
CU
1_555
A
HOH
474
D
O
HOH
1_555
118.1
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_655
-y+1,x-y,z
crystal symmetry operation
74.9960000000
0.0000000000
0.0000000000
-0.5000000000
0.8660254038
0.0000000000
-0.8660254038
-0.5000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
3_665
-x+y+1,-x+1,z
crystal symmetry operation
37.4980000000
64.9484411822
0.0000000000
A
N
VAL
47
A
N
VAL
4
A
O
GLU
72
A
O
GLU
29
A
N
LEU
84
A
N
LEU
41
A
O
ALA
88
A
O
ALA
45
A
N
VAL
47
A
N
VAL
4
A
O
GLU
72
A
O
GLU
29
A
N
ASN
71
A
N
ASN
28
A
O
GLU
113
A
O
GLU
70
A
N
LEU
116
A
N
LEU
73
A
O
VAL
151
A
O
VAL
108
A
N
MET
104
A
N
MET
61
A
O
MET
187
A
O
MET
144
A
O
VAL
188
A
O
VAL
145
A
N
GLY
161
A
N
GLY
118
A
O
HIS
166
A
O
HIS
123
A
N
ASP
129
A
N
ASP
86
A
O
HIS
249
A
O
HIS
206
A
N
HIS
215
A
N
HIS
172
A
N
ILE
210
A
N
ILE
167
A
O
VAL
276
A
O
VAL
233
A
N
VAL
273
A
N
VAL
230
A
O
TYR
325
A
O
TYR
282
A
O
LEU
324
A
O
LEU
281
A
N
LEU
295
A
N
LEU
252
A
N
VAL
296
A
N
VAL
253
A
O
GLU
307
A
O
GLU
264
A
N
LEU
265
A
N
LEU
222
A
O
HIS
351
A
O
HIS
308
A
O
VAL
354
A
O
VAL
311
A
N
GLY
331
A
N
GLY
288
A
O
ALA
334
A
O
ALA
291
A
N
ILE
289
A
N
ILE
246
1
A
HOH
439
D
HOH
1
A
CG
GLU
61
A
CG
GLU
18
0
Y
1
A
CD
GLU
61
A
CD
GLU
18
0
Y
1
A
OE1
GLU
61
A
OE1
GLU
18
0
Y
1
A
OE2
GLU
61
A
OE2
GLU
18
0
Y
1
A
A
OG1
O
THR
HOH
224
465
2.16
1
A
A
HIS
ASN
338
339
148.21
1
-17.20
2.20
113.40
96.20
A
A
A
CA
CB
CG
GLU
GLU
GLU
61
61
61
N
1
9.85
1.50
119.30
129.15
A
A
A
C
N
CA
PRO
PRO
PRO
119
120
120
Y
1
17.65
2.30
115.30
132.95
A
A
A
CA
CB
CG
LEU
LEU
LEU
324
324
324
N
1
A
A
CB
CG
GLU
GLU
61
61
0.220
0.019
1.517
1.737
N
1
A
PRO
147
-49.67
105.29
1
A
ASP
192
-66.59
7.70
1
A
ASN
281
-144.36
-13.58
1
A
PRO
369
-50.90
84.49
42.279
-2.070
-1.040
0.000
-2.070
0.000
3.110
0.956
0.930
0.241
0.192
0.194
2.260
31.77
760
15043
5.100
99.730
7.590
0.186
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.361
0.236
0.800
0.800
1.200
PDB ENTRY 1ZV2
MAXIMUM LIKELIHOOD
MASK
2.260
31.77
72
2604
2
0
2530
0.014
0.021
2599
1.583
1.952
3543
7.483
5.000
328
35.623
24.188
117
17.038
15.000
391
19.614
15.000
11
0.101
0.200
381
0.006
0.020
2035
0.207
0.200
1112
0.309
0.200
1686
0.153
0.200
150
0.003
0.200
1
0.182
0.200
85
0.153
0.200
26
0.748
1.500
1680
1.279
2.000
2628
1.775
3.000
1047
2.664
4.500
915
0.313
0.252
2.319
60
1049
1109
20
100.000
2.260
31.77
2DY2
15045
0.065
0.065
1
7.900
5.600
99.800
0.294
2.26
2.38
2.6
12157
2174
0.294
1
5.60
100.00
0.207
2.38
2.53
3.7
11859
2109
0.207
1
5.60
100.00
0.161
2.53
2.70
4.6
10938
1948
0.161
1
5.60
100.00
0.114
2.70
2.92
6.0
10451
1847
0.114
1
5.70
100.00
0.078
2.92
3.20
8.4
9399
1657
0.078
1
5.70
100.00
0.063
3.20
3.57
10.1
8771
1551
0.063
1
5.70
100.00
0.049
3.57
4.13
11.8
7393
1303
0.049
1
5.70
100.00
0.045
4.13
5.05
12.6
6520
1143
0.045
1
5.70
100.00
0.053
5.05
7.15
11.4
4990
873
0.053
1
5.70
100.00
0.033
7.15
51.23
20.4
2300
440
0.033
1
5.20
92.10
data scaling
Phil Evans
pre@mrc-lmb.cam.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/INDEX.html
SCALA
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data reduction
MOSFLM
data scaling
CCP4
(SCALA)
Nitrite reductase pH 6.0
1
N
N
2
N
N
2
N
N
3
N
N
The biological assembly is a trimer generated from the monomer in the asymmetric unit by the operations: -y, x-y-1, z-1 and
-x+y, -x-1, z-l.
A
ALA
136
A
ALA
93
HELX_P
A
THR
143
A
THR
100
5
1
8
A
PRO
172
A
PRO
129
HELX_P
A
VAL
179
A
VAL
136
1
2
8
A
ASP
230
A
ASP
187
HELX_P
A
THR
244
A
THR
201
1
3
15
A
THR
260
A
THR
217
HELX_P
A
ALA
264
A
ALA
221
5
4
5
A
ASN
339
A
ASN
296
HELX_P
A
HIS
345
A
HIS
302
1
5
7
metalc
2.265
A
HIS
126
A
ND1
HIS
83
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.099
A
HIS
131
A
NE2
HIS
88
3_665
A
CU
402
C
CU
CU
1_555
metalc
2.078
A
HIS
166
A
NE2
HIS
123
3_665
A
CU
402
C
CU
CU
1_555
metalc
2.154
A
CYS
167
A
SG
CYS
124
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.027
A
HIS
177
A
ND1
HIS
134
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.479
A
MET
182
A
SD
MET
139
1_555
A
CU
401
B
CU
CU
1_555
metalc
2.163
A
HIS
338
A
NE2
HIS
295
1_555
A
CU
402
C
CU
CU
1_555
metalc
2.088
A
CU
402
C
CU
CU
1_555
A
HOH
474
D
O
HOH
1_555
OXIDOREDUCTASE
copper protein, cupredoxin, denitrification, OXIDOREDUCTASE
A
PRO
54
A
PRO
11
1
A
PRO
55
A
PRO
12
11.41
A
ILE
99
A
ILE
56
1
A
PRO
100
A
PRO
57
3.44
NIR_RHOSH
UNP
1
44
Q53239
LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT
MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR
YDTVYYIGESDHYIPKDEDGTYMRFSTPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPKRD
SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATASVLVEGEWDNDLM
EQVWPPVGL
44
372
2DY2
44
372
Q53239
A
1
1
329
1
THR
SEE REMARK 999
ASP
230
2DY2
A
Q53239
UNP
230
187
1
LYS
SEE REMARK 999
ASN
281
2DY2
A
Q53239
UNP
281
238
1
THR
SEE REMARK 999
SER
319
2DY2
A
Q53239
UNP
319
276
1
SER
SEE REMARK 999
HIS
351
2DY2
A
Q53239
UNP
351
308
1
TRP
SEE REMARK 999
VAL
367
2DY2
A
Q53239
UNP
367
324
1
PRO
SEE REMARK 999
ALA
368
2DY2
A
Q53239
UNP
368
325
3
4
4
6
4
parallel
anti-parallel
parallel
parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ARG
46
A
ARG
3
A
LYS
48
A
LYS
5
A
ILE
70
A
ILE
27
A
ASP
85
A
ASP
42
A
ALA
88
A
ALA
45
A
PHE
95
A
PHE
52
A
ARG
46
A
ARG
3
A
LYS
48
A
LYS
5
A
ILE
70
A
ILE
27
A
ASP
85
A
ASP
42
A
TYR
111
A
TYR
68
A
ASN
118
A
ASN
75
A
GLU
149
A
GLU
106
A
LYS
156
A
LYS
113
A
GLY
101
A
GLY
58
A
HIS
107
A
HIS
64
A
ALA
183
A
ALA
140
A
LEU
189
A
LEU
146
A
GLY
161
A
GLY
118
A
HIS
166
A
HIS
123
A
ASP
129
A
ASP
86
A
PHE
130
A
PHE
87
A
HIS
249
A
HIS
206
A
PHE
252
A
PHE
209
A
THR
206
A
THR
163
A
HIS
215
A
HIS
172
A
ASN
272
A
ASN
229
A
GLN
279
A
GLN
236
A
SER
319
A
SER
276
A
LYS
326
A
LYS
283
A
GLY
293
A
GLY
250
A
TRP
297
A
TRP
254
A
GLU
307
A
GLU
264
A
LEU
310
A
LEU
267
A
LEU
265
A
LEU
222
A
LYS
268
A
LYS
225
A
THR
349
A
THR
306
A
GLU
355
A
GLU
312
A
GLY
331
A
GLY
288
A
ASN
337
A
ASN
294
A
PRO
286
A
PRO
243
A
ILE
289
A
ILE
246
BINDING SITE FOR RESIDUE CU A 401
A
CU
401
Software
4
BINDING SITE FOR RESIDUE CU A 402
A
CU
402
Software
4
A
HIS
126
A
HIS
83
4
1_555
A
CYS
167
A
CYS
124
4
1_555
A
HIS
177
A
HIS
134
4
1_555
A
MET
182
A
MET
139
4
1_555
A
HIS
131
A
HIS
88
4
3_665
A
HIS
166
A
HIS
123
4
3_665
A
HIS
338
A
HIS
295
4
1_555
A
HOH
474
D
HOH
4
1_555
146
H 3