0.013334 0.007698 0.000000 0.000000 0.015397 0.000000 0.000000 0.000000 0.006510 0.000000 0.000000 0.000000 Jacobson, F. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 9 90.000 90.000 120.000 74.996 74.996 153.611 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cu 2 63.546 COPPER (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CU N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N N Y 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N C N 336 N O N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N N N 350 S C N 351 N C N 352 N O N 353 N C Y 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C N 360 N O N 361 N O N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N N N 374 S C N 375 N C N 376 N O N 377 N C N 378 N C N 379 N C N 380 N O N 381 N H N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Biol.Chem. JBCHA3 0071 0021-9258 282 6347 6355 10.1074/jbc.M605746200 17148448 pH Dependence of Copper Geometry, Reduction Potential, and Nitrite Affinity in Nitrite Reductase 2007 10.2210/pdb2dy2/pdb pdb_00002dy2 100 1 CCD 2005-11-12 MARRESEARCH SINGLE WAVELENGTH M x-ray 1 1.115 1.0 I911-3 MAX II 1.115 SYNCHROTRON MAX II BEAMLINE I911-3 35911.645 Copper-containing nitrite reductase 1.7.2.1 1 man polymer 63.546 COPPER (II) ION 2 syn non-polymer 18.015 water 72 nat water Cu-NIR no no LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR YDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRD SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLM EQVVAPVGL LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR YDTVYYIGESDHYIPKDEDGTYMRFSDPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRD SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGSAGAALYKFLQPGVYAYVNHNLIEAVHKGATAHVLVEGEWDNDLM EQVVAPVGL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Rhodobacter 2.4.3 Escherichia Escherichia coli sample nirK 1063 Rhodobacter sphaeroides 469008 Escherichia coli BL21(DE3) BL21(DE3) plasmid pET17b 1 2.31 46.83 VAPOR DIFFUSION, HANGING DROP 6.0 Tris, MgCl2, PEG 1500, pH 6.0, vapor diffusion, hanging drop, temperature 298K 298 diffrn_source pdbx_unobs_or_zero_occ_atoms chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle pdbx_unobs_or_zero_occ_atoms struct_conn struct_site repository Initial release Version format compliance Derived calculations Version format compliance Advisory Data collection Advisory Data collection Database references Derived calculations Refinement description 1 0 2006-12-05 1 1 2008-04-30 1 2 2011-07-13 1 3 2018-05-23 1 4 2023-10-25 _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id The same protein with bound nitrite, pH 6.0 The same protein with bound nitrite, pH 8.4 The same protein at pH 8.4 PDBJ Y PDBJ 2006-09-05 REL REL CU COPPER (II) ION HOH water 1ZV2 PDB ENTRY 1ZV2 PDB experimental model CU 401 2 CU CU 401 A CU 402 2 CU CU 402 A HOH 1 3 HOH HOH 403 A HOH 2 3 HOH HOH 404 A HOH 3 3 HOH HOH 405 A HOH 4 3 HOH HOH 406 A HOH 5 3 HOH HOH 407 A HOH 6 3 HOH HOH 408 A HOH 7 3 HOH HOH 409 A HOH 8 3 HOH HOH 410 A HOH 9 3 HOH HOH 411 A HOH 10 3 HOH HOH 412 A HOH 11 3 HOH HOH 413 A HOH 12 3 HOH HOH 414 A HOH 13 3 HOH HOH 415 A HOH 14 3 HOH HOH 416 A HOH 15 3 HOH HOH 417 A HOH 16 3 HOH HOH 418 A HOH 17 3 HOH HOH 419 A HOH 18 3 HOH HOH 420 A HOH 19 3 HOH HOH 421 A HOH 20 3 HOH HOH 422 A HOH 21 3 HOH HOH 423 A HOH 22 3 HOH HOH 424 A HOH 23 3 HOH HOH 425 A HOH 24 3 HOH HOH 426 A HOH 25 3 HOH HOH 427 A HOH 26 3 HOH HOH 428 A HOH 27 3 HOH HOH 429 A HOH 28 3 HOH HOH 430 A HOH 29 3 HOH HOH 431 A HOH 30 3 HOH HOH 432 A HOH 31 3 HOH HOH 433 A HOH 32 3 HOH HOH 434 A HOH 33 3 HOH HOH 435 A HOH 34 3 HOH HOH 436 A HOH 35 3 HOH HOH 437 A HOH 36 3 HOH HOH 438 A HOH 37 3 HOH HOH 439 A HOH 38 3 HOH HOH 440 A HOH 39 3 HOH HOH 441 A HOH 40 3 HOH HOH 442 A HOH 41 3 HOH HOH 443 A HOH 42 3 HOH HOH 444 A HOH 43 3 HOH HOH 445 A HOH 44 3 HOH HOH 446 A HOH 45 3 HOH HOH 447 A HOH 46 3 HOH HOH 448 A HOH 47 3 HOH HOH 449 A HOH 48 3 HOH HOH 450 A HOH 49 3 HOH HOH 451 A HOH 50 3 HOH HOH 452 A HOH 51 3 HOH HOH 453 A HOH 52 3 HOH HOH 454 A HOH 53 3 HOH HOH 455 A HOH 54 3 HOH HOH 456 A HOH 55 3 HOH HOH 457 A HOH 56 3 HOH HOH 458 A HOH 57 3 HOH HOH 459 A HOH 58 3 HOH HOH 460 A HOH 59 3 HOH HOH 461 A HOH 60 3 HOH HOH 462 A HOH 61 3 HOH HOH 463 A HOH 62 3 HOH HOH 464 A HOH 63 3 HOH HOH 465 A HOH 64 3 HOH HOH 466 A HOH 65 3 HOH HOH 467 A HOH 66 3 HOH HOH 468 A HOH 67 3 HOH HOH 469 A HOH 68 3 HOH HOH 470 A HOH 69 3 HOH HOH 471 A HOH 70 3 HOH HOH 472 A HOH 71 3 HOH HOH 473 A HOH 72 3 HOH HOH 474 A LEU 44 n 1 LEU 44 A PRO 45 n 2 PRO 45 A ARG 46 n 3 ARG 46 A VAL 47 n 4 VAL 47 A LYS 48 n 5 LYS 48 A HIS 49 n 6 HIS 49 A THR 50 n 7 THR 50 A LEU 51 n 8 LEU 51 A VAL 52 n 9 VAL 52 A PRO 53 n 10 PRO 53 A PRO 54 n 11 PRO 54 A PRO 55 n 12 PRO 55 A PHE 56 n 13 PHE 56 A ALA 57 n 14 ALA 57 A HIS 58 n 15 HIS 58 A ALA 59 n 16 ALA 59 A HIS 60 n 17 HIS 60 A GLU 61 n 18 GLU 61 A GLN 62 n 19 GLN 62 A VAL 63 n 20 VAL 63 A ALA 64 n 21 ALA 64 A ALA 65 n 22 ALA 65 A SER 66 n 23 SER 66 A GLY 67 n 24 GLY 67 A PRO 68 n 25 PRO 68 A VAL 69 n 26 VAL 69 A ILE 70 n 27 ILE 70 A ASN 71 n 28 ASN 71 A GLU 72 n 29 GLU 72 A PHE 73 n 30 PHE 73 A GLU 74 n 31 GLU 74 A MET 75 n 32 MET 75 A ARG 76 n 33 ARG 76 A ILE 77 n 34 ILE 77 A ILE 78 n 35 ILE 78 A GLU 79 n 36 GLU 79 A LYS 80 n 37 LYS 80 A GLU 81 n 38 GLU 81 A VAL 82 n 39 VAL 82 A GLN 83 n 40 GLN 83 A LEU 84 n 41 LEU 84 A ASP 85 n 42 ASP 85 A GLU 86 n 43 GLU 86 A ASP 87 n 44 ASP 87 A ALA 88 n 45 ALA 88 A TYR 89 n 46 TYR 89 A LEU 90 n 47 LEU 90 A GLN 91 n 48 GLN 91 A ALA 92 n 49 ALA 92 A MET 93 n 50 MET 93 A THR 94 n 51 THR 94 A PHE 95 n 52 PHE 95 A ASP 96 n 53 ASP 96 A GLY 97 n 54 GLY 97 A SER 98 n 55 SER 98 A ILE 99 n 56 ILE 99 A PRO 100 n 57 PRO 100 A GLY 101 n 58 GLY 101 A PRO 102 n 59 PRO 102 A LEU 103 n 60 LEU 103 A MET 104 n 61 MET 104 A ILE 105 n 62 ILE 105 A VAL 106 n 63 VAL 106 A HIS 107 n 64 HIS 107 A GLU 108 n 65 GLU 108 A GLY 109 n 66 GLY 109 A ASP 110 n 67 ASP 110 A TYR 111 n 68 TYR 111 A VAL 112 n 69 VAL 112 A GLU 113 n 70 GLU 113 A LEU 114 n 71 LEU 114 A THR 115 n 72 THR 115 A LEU 116 n 73 LEU 116 A ILE 117 n 74 ILE 117 A ASN 118 n 75 ASN 118 A PRO 119 n 76 PRO 119 A PRO 120 n 77 PRO 120 A GLU 121 n 78 GLU 121 A ASN 122 n 79 ASN 122 A THR 123 n 80 THR 123 A MET 124 n 81 MET 124 A PRO 125 n 82 PRO 125 A HIS 126 n 83 HIS 126 A ASN 127 n 84 ASN 127 A ILE 128 n 85 ILE 128 A ASP 129 n 86 ASP 129 A PHE 130 n 87 PHE 130 A HIS 131 n 88 HIS 131 A ALA 132 n 89 ALA 132 A ALA 133 n 90 ALA 133 A THR 134 n 91 THR 134 A GLY 135 n 92 GLY 135 A ALA 136 n 93 ALA 136 A LEU 137 n 94 LEU 137 A GLY 138 n 95 GLY 138 A GLY 139 n 96 GLY 139 A GLY 140 n 97 GLY 140 A GLY 141 n 98 GLY 141 A LEU 142 n 99 LEU 142 A THR 143 n 100 THR 143 A LEU 144 n 101 LEU 144 A ILE 145 n 102 ILE 145 A ASN 146 n 103 ASN 146 A PRO 147 n 104 PRO 147 A GLY 148 n 105 GLY 148 A GLU 149 n 106 GLU 149 A LYS 150 n 107 LYS 150 A VAL 151 n 108 VAL 151 A VAL 152 n 109 VAL 152 A LEU 153 n 110 LEU 153 A ARG 154 n 111 ARG 154 A PHE 155 n 112 PHE 155 A LYS 156 n 113 LYS 156 A ALA 157 n 114 ALA 157 A THR 158 n 115 THR 158 A ARG 159 n 116 ARG 159 A ALA 160 n 117 ALA 160 A GLY 161 n 118 GLY 161 A ALA 162 n 119 ALA 162 A PHE 163 n 120 PHE 163 A VAL 164 n 121 VAL 164 A TYR 165 n 122 TYR 165 A HIS 166 n 123 HIS 166 A CYS 167 n 124 CYS 167 A ALA 168 n 125 ALA 168 A PRO 169 n 126 PRO 169 A GLY 170 n 127 GLY 170 A GLY 171 n 128 GLY 171 A PRO 172 n 129 PRO 172 A MET 173 n 130 MET 173 A ILE 174 n 131 ILE 174 A PRO 175 n 132 PRO 175 A TRP 176 n 133 TRP 176 A HIS 177 n 134 HIS 177 A VAL 178 n 135 VAL 178 A VAL 179 n 136 VAL 179 A SER 180 n 137 SER 180 A GLY 181 n 138 GLY 181 A MET 182 n 139 MET 182 A ALA 183 n 140 ALA 183 A GLY 184 n 141 GLY 184 A CYS 185 n 142 CYS 185 A ILE 186 n 143 ILE 186 A MET 187 n 144 MET 187 A VAL 188 n 145 VAL 188 A LEU 189 n 146 LEU 189 A PRO 190 n 147 PRO 190 A ARG 191 n 148 ARG 191 A ASP 192 n 149 ASP 192 A GLY 193 n 150 GLY 193 A LEU 194 n 151 LEU 194 A LYS 195 n 152 LYS 195 A ASP 196 n 153 ASP 196 A HIS 197 n 154 HIS 197 A GLU 198 n 155 GLU 198 A GLY 199 n 156 GLY 199 A LYS 200 n 157 LYS 200 A PRO 201 n 158 PRO 201 A VAL 202 n 159 VAL 202 A ARG 203 n 160 ARG 203 A TYR 204 n 161 TYR 204 A ASP 205 n 162 ASP 205 A THR 206 n 163 THR 206 A VAL 207 n 164 VAL 207 A TYR 208 n 165 TYR 208 A TYR 209 n 166 TYR 209 A ILE 210 n 167 ILE 210 A GLY 211 n 168 GLY 211 A GLU 212 n 169 GLU 212 A SER 213 n 170 SER 213 A ASP 214 n 171 ASP 214 A HIS 215 n 172 HIS 215 A TYR 216 n 173 TYR 216 A ILE 217 n 174 ILE 217 A PRO 218 n 175 PRO 218 A LYS 219 n 176 LYS 219 A ASP 220 n 177 ASP 220 A GLU 221 n 178 GLU 221 A ASP 222 n 179 ASP 222 A GLY 223 n 180 GLY 223 A THR 224 n 181 THR 224 A TYR 225 n 182 TYR 225 A MET 226 n 183 MET 226 A ARG 227 n 184 ARG 227 A PHE 228 n 185 PHE 228 A SER 229 n 186 SER 229 A ASP 230 n 187 ASP 230 A PRO 231 n 188 PRO 231 A SER 232 n 189 SER 232 A GLU 233 n 190 GLU 233 A GLY 234 n 191 GLY 234 A TYR 235 n 192 TYR 235 A GLU 236 n 193 GLU 236 A ASP 237 n 194 ASP 237 A MET 238 n 195 MET 238 A VAL 239 n 196 VAL 239 A ALA 240 n 197 ALA 240 A VAL 241 n 198 VAL 241 A MET 242 n 199 MET 242 A ASP 243 n 200 ASP 243 A THR 244 n 201 THR 244 A LEU 245 n 202 LEU 245 A ILE 246 n 203 ILE 246 A PRO 247 n 204 PRO 247 A SER 248 n 205 SER 248 A HIS 249 n 206 HIS 249 A ILE 250 n 207 ILE 250 A VAL 251 n 208 VAL 251 A PHE 252 n 209 PHE 252 A ASN 253 n 210 ASN 253 A GLY 254 n 211 GLY 254 A ALA 255 n 212 ALA 255 A VAL 256 n 213 VAL 256 A GLY 257 n 214 GLY 257 A ALA 258 n 215 ALA 258 A LEU 259 n 216 LEU 259 A THR 260 n 217 THR 260 A GLY 261 n 218 GLY 261 A GLU 262 n 219 GLU 262 A GLY 263 n 220 GLY 263 A ALA 264 n 221 ALA 264 A LEU 265 n 222 LEU 265 A LYS 266 n 223 LYS 266 A ALA 267 n 224 ALA 267 A LYS 268 n 225 LYS 268 A VAL 269 n 226 VAL 269 A GLY 270 n 227 GLY 270 A ASP 271 n 228 ASP 271 A ASN 272 n 229 ASN 272 A VAL 273 n 230 VAL 273 A LEU 274 n 231 LEU 274 A PHE 275 n 232 PHE 275 A VAL 276 n 233 VAL 276 A HIS 277 n 234 HIS 277 A SER 278 n 235 SER 278 A GLN 279 n 236 GLN 279 A PRO 280 n 237 PRO 280 A ASN 281 n 238 ASN 281 A ARG 282 n 239 ARG 282 A ASP 283 n 240 ASP 283 A SER 284 n 241 SER 284 A ARG 285 n 242 ARG 285 A PRO 286 n 243 PRO 286 A HIS 287 n 244 HIS 287 A LEU 288 n 245 LEU 288 A ILE 289 n 246 ILE 289 A GLY 290 n 247 GLY 290 A GLY 291 n 248 GLY 291 A HIS 292 n 249 HIS 292 A GLY 293 n 250 GLY 293 A ASP 294 n 251 ASP 294 A LEU 295 n 252 LEU 295 A VAL 296 n 253 VAL 296 A TRP 297 n 254 TRP 297 A GLU 298 n 255 GLU 298 A THR 299 n 256 THR 299 A GLY 300 n 257 GLY 300 A LYS 301 n 258 LYS 301 A PHE 302 n 259 PHE 302 A HIS 303 n 260 HIS 303 A ASN 304 n 261 ASN 304 A ALA 305 n 262 ALA 305 A PRO 306 n 263 PRO 306 A GLU 307 n 264 GLU 307 A ARG 308 n 265 ARG 308 A ASP 309 n 266 ASP 309 A LEU 310 n 267 LEU 310 A GLU 311 n 268 GLU 311 A THR 312 n 269 THR 312 A TRP 313 n 270 TRP 313 A PHE 314 n 271 PHE 314 A ILE 315 n 272 ILE 315 A ARG 316 n 273 ARG 316 A GLY 317 n 274 GLY 317 A GLY 318 n 275 GLY 318 A SER 319 n 276 SER 319 A ALA 320 n 277 ALA 320 A GLY 321 n 278 GLY 321 A ALA 322 n 279 ALA 322 A ALA 323 n 280 ALA 323 A LEU 324 n 281 LEU 324 A TYR 325 n 282 TYR 325 A LYS 326 n 283 LYS 326 A PHE 327 n 284 PHE 327 A LEU 328 n 285 LEU 328 A GLN 329 n 286 GLN 329 A PRO 330 n 287 PRO 330 A GLY 331 n 288 GLY 331 A VAL 332 n 289 VAL 332 A TYR 333 n 290 TYR 333 A ALA 334 n 291 ALA 334 A TYR 335 n 292 TYR 335 A VAL 336 n 293 VAL 336 A ASN 337 n 294 ASN 337 A HIS 338 n 295 HIS 338 A ASN 339 n 296 ASN 339 A LEU 340 n 297 LEU 340 A ILE 341 n 298 ILE 341 A GLU 342 n 299 GLU 342 A ALA 343 n 300 ALA 343 A VAL 344 n 301 VAL 344 A HIS 345 n 302 HIS 345 A LYS 346 n 303 LYS 346 A GLY 347 n 304 GLY 347 A ALA 348 n 305 ALA 348 A THR 349 n 306 THR 349 A ALA 350 n 307 ALA 350 A HIS 351 n 308 HIS 351 A VAL 352 n 309 VAL 352 A LEU 353 n 310 LEU 353 A VAL 354 n 311 VAL 354 A GLU 355 n 312 GLU 355 A GLY 356 n 313 GLY 356 A GLU 357 n 314 GLU 357 A TRP 358 n 315 TRP 358 A ASP 359 n 316 ASP 359 A ASN 360 n 317 ASN 360 A ASP 361 n 318 ASP 361 A LEU 362 n 319 LEU 362 A MET 363 n 320 MET 363 A GLU 364 n 321 GLU 364 A GLN 365 n 322 GLN 365 A VAL 366 n 323 VAL 366 A VAL 367 n 324 VAL 367 A ALA 368 n 325 ALA 368 A PRO 369 n 326 PRO 369 A VAL 370 n 327 VAL 370 A GLY 371 n 328 GLY 371 A LEU 372 n 329 LEU 372 A author_and_software_defined_assembly PISA,PQS 3 trimeric 13600 -95 31180 A HIS 126 A ND1 HIS 83 1_555 A CU 401 B CU CU 1_555 A CYS 167 A SG CYS 124 1_555 124.7 A HIS 126 A ND1 HIS 83 1_555 A CU 401 B CU CU 1_555 A HIS 177 A ND1 HIS 134 1_555 98.4 A CYS 167 A SG CYS 124 1_555 A CU 401 B CU CU 1_555 A HIS 177 A ND1 HIS 134 1_555 117.8 A HIS 126 A ND1 HIS 83 1_555 A CU 401 B CU CU 1_555 A MET 182 A SD MET 139 1_555 81.4 A CYS 167 A SG CYS 124 1_555 A CU 401 B CU CU 1_555 A MET 182 A SD MET 139 1_555 106.1 A HIS 177 A ND1 HIS 134 1_555 A CU 401 B CU CU 1_555 A MET 182 A SD MET 139 1_555 124.5 A HIS 131 A NE2 HIS 88 3_665 A CU 402 C CU CU 1_555 A HIS 166 A NE2 HIS 123 3_665 111.5 A HIS 131 A NE2 HIS 88 3_665 A CU 402 C CU CU 1_555 A HIS 338 A NE2 HIS 295 1_555 106.7 A HIS 166 A NE2 HIS 123 3_665 A CU 402 C CU CU 1_555 A HIS 338 A NE2 HIS 295 1_555 110.5 A HIS 131 A NE2 HIS 88 3_665 A CU 402 C CU CU 1_555 A HOH 474 D O HOH 1_555 107.2 A HIS 166 A NE2 HIS 123 3_665 A CU 402 C CU CU 1_555 A HOH 474 D O HOH 1_555 102.8 A HIS 338 A NE2 HIS 295 1_555 A CU 402 C CU CU 1_555 A HOH 474 D O HOH 1_555 118.1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_655 -y+1,x-y,z crystal symmetry operation 74.9960000000 0.0000000000 0.0000000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_665 -x+y+1,-x+1,z crystal symmetry operation 37.4980000000 64.9484411822 0.0000000000 A N VAL 47 A N VAL 4 A O GLU 72 A O GLU 29 A N LEU 84 A N LEU 41 A O ALA 88 A O ALA 45 A N VAL 47 A N VAL 4 A O GLU 72 A O GLU 29 A N ASN 71 A N ASN 28 A O GLU 113 A O GLU 70 A N LEU 116 A N LEU 73 A O VAL 151 A O VAL 108 A N MET 104 A N MET 61 A O MET 187 A O MET 144 A O VAL 188 A O VAL 145 A N GLY 161 A N GLY 118 A O HIS 166 A O HIS 123 A N ASP 129 A N ASP 86 A O HIS 249 A O HIS 206 A N HIS 215 A N HIS 172 A N ILE 210 A N ILE 167 A O VAL 276 A O VAL 233 A N VAL 273 A N VAL 230 A O TYR 325 A O TYR 282 A O LEU 324 A O LEU 281 A N LEU 295 A N LEU 252 A N VAL 296 A N VAL 253 A O GLU 307 A O GLU 264 A N LEU 265 A N LEU 222 A O HIS 351 A O HIS 308 A O VAL 354 A O VAL 311 A N GLY 331 A N GLY 288 A O ALA 334 A O ALA 291 A N ILE 289 A N ILE 246 1 A HOH 439 D HOH 1 A CG GLU 61 A CG GLU 18 0 Y 1 A CD GLU 61 A CD GLU 18 0 Y 1 A OE1 GLU 61 A OE1 GLU 18 0 Y 1 A OE2 GLU 61 A OE2 GLU 18 0 Y 1 A A OG1 O THR HOH 224 465 2.16 1 A A HIS ASN 338 339 148.21 1 -17.20 2.20 113.40 96.20 A A A CA CB CG GLU GLU GLU 61 61 61 N 1 9.85 1.50 119.30 129.15 A A A C N CA PRO PRO PRO 119 120 120 Y 1 17.65 2.30 115.30 132.95 A A A CA CB CG LEU LEU LEU 324 324 324 N 1 A A CB CG GLU GLU 61 61 0.220 0.019 1.517 1.737 N 1 A PRO 147 -49.67 105.29 1 A ASP 192 -66.59 7.70 1 A ASN 281 -144.36 -13.58 1 A PRO 369 -50.90 84.49 42.279 -2.070 -1.040 0.000 -2.070 0.000 3.110 0.956 0.930 0.241 0.192 0.194 2.260 31.77 760 15043 5.100 99.730 7.590 0.186 RANDOM 1 THROUGHOUT 0.00 MOLECULAR REPLACEMENT 0.361 0.236 0.800 0.800 1.200 PDB ENTRY 1ZV2 MAXIMUM LIKELIHOOD MASK 2.260 31.77 72 2604 2 0 2530 0.014 0.021 2599 1.583 1.952 3543 7.483 5.000 328 35.623 24.188 117 17.038 15.000 391 19.614 15.000 11 0.101 0.200 381 0.006 0.020 2035 0.207 0.200 1112 0.309 0.200 1686 0.153 0.200 150 0.003 0.200 1 0.182 0.200 85 0.153 0.200 26 0.748 1.500 1680 1.279 2.000 2628 1.775 3.000 1047 2.664 4.500 915 0.313 0.252 2.319 60 1049 1109 20 100.000 2.260 31.77 2DY2 15045 0.065 0.065 1 7.900 5.600 99.800 0.294 2.26 2.38 2.6 12157 2174 0.294 1 5.60 100.00 0.207 2.38 2.53 3.7 11859 2109 0.207 1 5.60 100.00 0.161 2.53 2.70 4.6 10938 1948 0.161 1 5.60 100.00 0.114 2.70 2.92 6.0 10451 1847 0.114 1 5.70 100.00 0.078 2.92 3.20 8.4 9399 1657 0.078 1 5.70 100.00 0.063 3.20 3.57 10.1 8771 1551 0.063 1 5.70 100.00 0.049 3.57 4.13 11.8 7393 1303 0.049 1 5.70 100.00 0.045 4.13 5.05 12.6 6520 1143 0.045 1 5.70 100.00 0.053 5.05 7.15 11.4 4990 873 0.053 1 5.70 100.00 0.033 7.15 51.23 20.4 2300 440 0.033 1 5.20 92.10 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA other refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data reduction MOSFLM data scaling CCP4 (SCALA) Nitrite reductase pH 6.0 1 N N 2 N N 2 N N 3 N N The biological assembly is a trimer generated from the monomer in the asymmetric unit by the operations: -y, x-y-1, z-1 and -x+y, -x-1, z-l. A ALA 136 A ALA 93 HELX_P A THR 143 A THR 100 5 1 8 A PRO 172 A PRO 129 HELX_P A VAL 179 A VAL 136 1 2 8 A ASP 230 A ASP 187 HELX_P A THR 244 A THR 201 1 3 15 A THR 260 A THR 217 HELX_P A ALA 264 A ALA 221 5 4 5 A ASN 339 A ASN 296 HELX_P A HIS 345 A HIS 302 1 5 7 metalc 2.265 A HIS 126 A ND1 HIS 83 1_555 A CU 401 B CU CU 1_555 metalc 2.099 A HIS 131 A NE2 HIS 88 3_665 A CU 402 C CU CU 1_555 metalc 2.078 A HIS 166 A NE2 HIS 123 3_665 A CU 402 C CU CU 1_555 metalc 2.154 A CYS 167 A SG CYS 124 1_555 A CU 401 B CU CU 1_555 metalc 2.027 A HIS 177 A ND1 HIS 134 1_555 A CU 401 B CU CU 1_555 metalc 2.479 A MET 182 A SD MET 139 1_555 A CU 401 B CU CU 1_555 metalc 2.163 A HIS 338 A NE2 HIS 295 1_555 A CU 402 C CU CU 1_555 metalc 2.088 A CU 402 C CU CU 1_555 A HOH 474 D O HOH 1_555 OXIDOREDUCTASE copper protein, cupredoxin, denitrification, OXIDOREDUCTASE A PRO 54 A PRO 11 1 A PRO 55 A PRO 12 11.41 A ILE 99 A ILE 56 1 A PRO 100 A PRO 57 3.44 NIR_RHOSH UNP 1 44 Q53239 LPRVKHTLVPPPFAHAHEQVAASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINPPENT MPHNIDFHAATGALGGGGLTLINPGEKVVLRFKATRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPVR YDTVYYIGESDHYIPKDEDGTYMRFSTPSEGYEDMVAVMDTLIPSHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPKRD SRPHLIGGHGDLVWETGKFHNAPERDLETWFIRGGTAGAALYKFLQPGVYAYVNHNLIEAVHKGATASVLVEGEWDNDLM EQVWPPVGL 44 372 2DY2 44 372 Q53239 A 1 1 329 1 THR SEE REMARK 999 ASP 230 2DY2 A Q53239 UNP 230 187 1 LYS SEE REMARK 999 ASN 281 2DY2 A Q53239 UNP 281 238 1 THR SEE REMARK 999 SER 319 2DY2 A Q53239 UNP 319 276 1 SER SEE REMARK 999 HIS 351 2DY2 A Q53239 UNP 351 308 1 TRP SEE REMARK 999 VAL 367 2DY2 A Q53239 UNP 367 324 1 PRO SEE REMARK 999 ALA 368 2DY2 A Q53239 UNP 368 325 3 4 4 6 4 parallel anti-parallel parallel parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ARG 46 A ARG 3 A LYS 48 A LYS 5 A ILE 70 A ILE 27 A ASP 85 A ASP 42 A ALA 88 A ALA 45 A PHE 95 A PHE 52 A ARG 46 A ARG 3 A LYS 48 A LYS 5 A ILE 70 A ILE 27 A ASP 85 A ASP 42 A TYR 111 A TYR 68 A ASN 118 A ASN 75 A GLU 149 A GLU 106 A LYS 156 A LYS 113 A GLY 101 A GLY 58 A HIS 107 A HIS 64 A ALA 183 A ALA 140 A LEU 189 A LEU 146 A GLY 161 A GLY 118 A HIS 166 A HIS 123 A ASP 129 A ASP 86 A PHE 130 A PHE 87 A HIS 249 A HIS 206 A PHE 252 A PHE 209 A THR 206 A THR 163 A HIS 215 A HIS 172 A ASN 272 A ASN 229 A GLN 279 A GLN 236 A SER 319 A SER 276 A LYS 326 A LYS 283 A GLY 293 A GLY 250 A TRP 297 A TRP 254 A GLU 307 A GLU 264 A LEU 310 A LEU 267 A LEU 265 A LEU 222 A LYS 268 A LYS 225 A THR 349 A THR 306 A GLU 355 A GLU 312 A GLY 331 A GLY 288 A ASN 337 A ASN 294 A PRO 286 A PRO 243 A ILE 289 A ILE 246 BINDING SITE FOR RESIDUE CU A 401 A CU 401 Software 4 BINDING SITE FOR RESIDUE CU A 402 A CU 402 Software 4 A HIS 126 A HIS 83 4 1_555 A CYS 167 A CYS 124 4 1_555 A HIS 177 A HIS 134 4 1_555 A MET 182 A MET 139 4 1_555 A HIS 131 A HIS 88 4 3_665 A HIS 166 A HIS 123 4 3_665 A HIS 338 A HIS 295 4 1_555 A HOH 474 D HOH 4 1_555 146 H 3