data_2DZ7 # _entry.id 2DZ7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.380 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2DZ7 pdb_00002dz7 10.2210/pdb2dz7/pdb NDB BD0098 ? ? RCSB RCSB026025 ? ? WWPDB D_1000026025 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2DZ7 _pdbx_database_status.recvd_initial_deposition_date 2006-09-21 _pdbx_database_status.deposit_site PDBJ _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Sato, Y.' 1 ? 'Mitomi, K.' 2 ? 'Sumani, T.' 3 ? 'Kondo, J.' 4 ? 'Takenaka, A.' 5 ? # _citation.id primary _citation.title 'DNA octaplex formation with an I-motif of water-mediated A-quartets: reinterpretation of the crystal structure of d(GCGAAAGC)' _citation.journal_abbrev 'J.Biochem.(Tokyo)' _citation.journal_volume 140 _citation.page_first 759 _citation.page_last 762 _citation.year 2006 _citation.journal_id_ASTM JOBIAO _citation.country JA _citation.journal_id_ISSN 0021-924X _citation.journal_id_CSD 0418 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17062599 _citation.pdbx_database_id_DOI 10.1093/jb/mvj213 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sato, Y.' 1 ? primary 'Mitomi, K.' 2 ? primary 'Sunami, T.' 3 ? primary 'Kondo, J.' 4 ? primary 'Takenaka, A.' 5 ? # _cell.entry_id 2DZ7 _cell.length_a 36.909 _cell.length_b 36.909 _cell.length_c 64.337 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2DZ7 _symmetry.space_group_name_H-M 'I 4 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*DGP*DCP*DGP*DAP*DAP*DAP*DGP*DC)-3') ; 2460.644 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 water nat water 18.015 72 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DG)(DC)(DG)(DA)(DA)(DA)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GCGAAAGC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DG n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'chemically synthesized' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2DZ7 _struct_ref.pdbx_db_accession 2DZ7 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2DZ7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2DZ7 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 2DZ7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.87 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details ;sodium chloride, magnesium chloride, spermine 4HCl, 2-methyl-2,4-pentanediol, sodium cacodylate, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium chloride' ? ? ? 1 2 1 'magnesium chloride' ? ? ? 1 3 1 'spermine 4HCl' ? ? ? 1 4 1 2-methyl-2,4-pentanediol ? ? ? 1 5 1 'sodium cacodylate' ? ? ? 1 6 1 HOH ? ? ? 1 7 2 'sodium chloride' ? ? ? 1 8 2 'magnesium chloride' ? ? ? 1 9 2 'sodium cacodylate' ? ? ? 1 10 2 HOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2001-10-21 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE BL-18B' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline BL-18B _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0 # _reflns.entry_id 2DZ7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 60 _reflns.d_resolution_high 1.58 _reflns.number_obs 3359 _reflns.number_all ? _reflns.percent_possible_obs 99.9 _reflns.pdbx_Rmerge_I_obs 0.063 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 15.3 _reflns.B_iso_Wilson_estimate 11.5 _reflns.pdbx_redundancy 10.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.58 _reflns_shell.d_res_low 1.64 _reflns_shell.percent_possible_all 99.4 _reflns_shell.Rmerge_I_obs 0.305 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 3.3 _reflns_shell.pdbx_redundancy 6.2 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 2DZ7 _refine.ls_number_reflns_obs 2764 _refine.ls_number_reflns_all 3359 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 772275.75 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.60 _refine.ls_percent_reflns_obs 88.0 _refine.ls_R_factor_obs 0.19 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.19 _refine.ls_R_factor_R_free 0.211 _refine.ls_R_factor_R_free_error 0.013 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.8 _refine.ls_number_reflns_R_free 270 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 32.3 _refine.aniso_B[1][1] 3.65 _refine.aniso_B[2][2] 3.65 _refine.aniso_B[3][3] -7.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.455882 _refine.solvent_model_param_bsol 68.6892 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'The structure was refined also with Refmac5' _refine.pdbx_starting_model '1UE3(PDB code)' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2DZ7 _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.10 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.22 _refine_analyze.Luzzati_sigma_a_free 0.15 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 164 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 72 _refine_hist.number_atoms_total 238 _refine_hist.d_res_high 1.60 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 2.1 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 22.2 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.47 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.60 _refine_ls_shell.d_res_low 1.70 _refine_ls_shell.number_reflns_R_work 304 _refine_ls_shell.R_factor_R_work 0.2 _refine_ls_shell.percent_reflns_obs 67.2 _refine_ls_shell.R_factor_R_free 0.282 _refine_ls_shell.R_factor_R_free_error 0.048 _refine_ls_shell.percent_reflns_R_free 10.1 _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 dna-rna_rep.param ? 'X-RAY DIFFRACTION' 2 ion.param ? 'X-RAY DIFFRACTION' 3 water_rep.param ? 'X-RAY DIFFRACTION' 4 mg_o6.param ? 'X-RAY DIFFRACTION' # _struct.entry_id 2DZ7 _struct.title 'DNA Octaplex Formation with an I-Motif of A-Quartets: The Revised Crystal Structure of d(GCGAAAGC)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2DZ7 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'A-quartet, DNA octaplex, non-coding DNA, VNTR, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1002 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1003 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1004 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1005 1_555 ? ? ? ? ? ? ? 2.060 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1006 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 1001 A HOH 1007 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc7 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 2001 A HOH 2044 1_555 ? ? ? ? ? ? ? 2.117 ? ? metalc8 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 2001 A HOH 2044 4_665 ? ? ? ? ? ? ? 2.117 ? ? metalc9 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 2001 A HOH 2044 2_755 ? ? ? ? ? ? ? 2.117 ? ? metalc10 metalc ? ? B MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 2001 A HOH 2044 3_645 ? ? ? ? ? ? ? 2.117 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 7 N1 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 7 O6 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 7 N2 ? ? A DC 2 A DG 7 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DA 6 N7 ? ? A DG 3 A DA 6 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 N3 ? ? ? 1_555 A DA 6 N6 ? ? A DG 3 A DA 6 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog9 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DG 3 N3 ? ? A DA 6 A DG 3 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog10 hydrog ? ? A DA 6 N7 ? ? ? 1_555 A DG 3 N2 ? ? A DA 6 A DG 3 8_666 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog11 hydrog ? ? A DG 7 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 7 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DG 7 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 7 A DC 2 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 8_666 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 2001 ? 4 'BINDING SITE FOR RESIDUE MG A 2001' AC2 Software A MG 1001 ? 6 'BINDING SITE FOR RESIDUE MG A 1001' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 HOH D . ? HOH A 2044 . ? 3_645 ? 2 AC1 4 HOH D . ? HOH A 2044 . ? 1_555 ? 3 AC1 4 HOH D . ? HOH A 2044 . ? 2_755 ? 4 AC1 4 HOH D . ? HOH A 2044 . ? 4_665 ? 5 AC2 6 HOH D . ? HOH A 1002 . ? 1_555 ? 6 AC2 6 HOH D . ? HOH A 1003 . ? 1_555 ? 7 AC2 6 HOH D . ? HOH A 1004 . ? 1_555 ? 8 AC2 6 HOH D . ? HOH A 1005 . ? 1_555 ? 9 AC2 6 HOH D . ? HOH A 1006 . ? 1_555 ? 10 AC2 6 HOH D . ? HOH A 1007 . ? 1_555 ? # _database_PDB_matrix.entry_id 2DZ7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2DZ7 _atom_sites.fract_transf_matrix[1][1] 0.027094 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.027094 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015543 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? 31.064 2.198 51.374 1.00 39.88 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? 31.662 1.723 50.135 1.00 26.44 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? 30.666 0.813 49.445 1.00 23.94 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? 29.464 1.535 49.071 1.00 25.91 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? 31.138 0.225 48.141 1.00 23.15 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? 30.377 -1.010 48.039 1.00 29.58 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? 30.721 1.253 47.097 1.00 24.85 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? 29.403 1.752 47.669 1.00 22.45 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? 29.168 3.166 47.462 1.00 21.46 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? 30.103 4.175 47.540 1.00 27.03 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? 29.581 5.379 47.362 1.00 18.13 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? 28.220 5.126 47.141 1.00 16.86 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 27.155 6.028 46.903 1.00 19.53 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 27.187 7.262 46.771 1.00 21.64 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? 25.950 5.367 46.754 1.00 18.17 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? 25.769 4.010 46.854 1.00 24.61 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? 24.514 3.535 46.691 1.00 23.97 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? 26.758 3.162 47.097 1.00 20.81 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? 27.952 3.786 47.226 1.00 19.00 ? 1 DG A C4 1 ATOM 20 P P . DC A 1 2 ? 30.652 -2.051 46.851 1.00 28.89 ? 2 DC A P 1 ATOM 21 O OP1 . DC A 1 2 ? 30.333 -3.360 47.478 1.00 32.04 ? 2 DC A OP1 1 ATOM 22 O OP2 . DC A 1 2 ? 31.939 -1.803 46.199 1.00 27.21 ? 2 DC A OP2 1 ATOM 23 O "O5'" . DC A 1 2 ? 29.575 -1.745 45.727 1.00 25.20 ? 2 DC A "O5'" 1 ATOM 24 C "C5'" . DC A 1 2 ? 28.202 -1.999 45.977 1.00 18.17 ? 2 DC A "C5'" 1 ATOM 25 C "C4'" . DC A 1 2 ? 27.381 -1.467 44.837 1.00 18.24 ? 2 DC A "C4'" 1 ATOM 26 O "O4'" . DC A 1 2 ? 27.443 -0.009 44.889 1.00 20.59 ? 2 DC A "O4'" 1 ATOM 27 C "C3'" . DC A 1 2 ? 27.917 -1.813 43.451 1.00 19.11 ? 2 DC A "C3'" 1 ATOM 28 O "O3'" . DC A 1 2 ? 26.838 -2.367 42.703 1.00 25.14 ? 2 DC A "O3'" 1 ATOM 29 C "C2'" . DC A 1 2 ? 28.392 -0.479 42.853 1.00 20.86 ? 2 DC A "C2'" 1 ATOM 30 C "C1'" . DC A 1 2 ? 27.428 0.462 43.584 1.00 17.26 ? 2 DC A "C1'" 1 ATOM 31 N N1 . DC A 1 2 ? 27.885 1.855 43.677 1.00 19.47 ? 2 DC A N1 1 ATOM 32 C C2 . DC A 1 2 ? 26.878 2.844 43.647 1.00 22.20 ? 2 DC A C2 1 ATOM 33 O O2 . DC A 1 2 ? 25.702 2.500 43.553 1.00 19.41 ? 2 DC A O2 1 ATOM 34 N N3 . DC A 1 2 ? 27.263 4.123 43.736 1.00 18.20 ? 2 DC A N3 1 ATOM 35 C C4 . DC A 1 2 ? 28.545 4.438 43.849 1.00 17.79 ? 2 DC A C4 1 ATOM 36 N N4 . DC A 1 2 ? 28.863 5.739 43.921 1.00 16.21 ? 2 DC A N4 1 ATOM 37 C C5 . DC A 1 2 ? 29.578 3.452 43.895 1.00 19.24 ? 2 DC A C5 1 ATOM 38 C C6 . DC A 1 2 ? 29.211 2.164 43.815 1.00 19.63 ? 2 DC A C6 1 ATOM 39 P P . DG A 1 3 ? 27.050 -2.958 41.244 1.00 24.80 ? 3 DG A P 1 ATOM 40 O OP1 . DG A 1 3 ? 25.973 -3.970 41.190 1.00 27.13 ? 3 DG A OP1 1 ATOM 41 O OP2 . DG A 1 3 ? 28.488 -3.274 40.988 1.00 25.38 ? 3 DG A OP2 1 ATOM 42 O "O5'" . DG A 1 3 ? 26.675 -1.727 40.309 1.00 24.37 ? 3 DG A "O5'" 1 ATOM 43 C "C5'" . DG A 1 3 ? 25.359 -1.156 40.344 1.00 19.72 ? 3 DG A "C5'" 1 ATOM 44 C "C4'" . DG A 1 3 ? 25.355 0.183 39.650 1.00 24.65 ? 3 DG A "C4'" 1 ATOM 45 O "O4'" . DG A 1 3 ? 26.415 0.996 40.236 1.00 18.96 ? 3 DG A "O4'" 1 ATOM 46 C "C3'" . DG A 1 3 ? 25.608 0.111 38.158 1.00 20.26 ? 3 DG A "C3'" 1 ATOM 47 O "O3'" . DG A 1 3 ? 24.771 1.089 37.539 1.00 23.69 ? 3 DG A "O3'" 1 ATOM 48 C "C2'" . DG A 1 3 ? 27.072 0.493 38.079 1.00 24.21 ? 3 DG A "C2'" 1 ATOM 49 C "C1'" . DG A 1 3 ? 27.150 1.558 39.183 1.00 15.57 ? 3 DG A "C1'" 1 ATOM 50 N N9 . DG A 1 3 ? 28.511 1.785 39.630 1.00 19.82 ? 3 DG A N9 1 ATOM 51 C C8 . DG A 1 3 ? 29.564 0.886 39.702 1.00 17.45 ? 3 DG A C8 1 ATOM 52 N N7 . DG A 1 3 ? 30.674 1.428 40.141 1.00 24.59 ? 3 DG A N7 1 ATOM 53 C C5 . DG A 1 3 ? 30.341 2.770 40.369 1.00 21.52 ? 3 DG A C5 1 ATOM 54 C C6 . DG A 1 3 ? 31.136 3.852 40.821 1.00 19.87 ? 3 DG A C6 1 ATOM 55 O O6 . DG A 1 3 ? 32.339 3.842 41.140 1.00 22.05 ? 3 DG A O6 1 ATOM 56 N N1 . DG A 1 3 ? 30.416 5.041 40.891 1.00 19.72 ? 3 DG A N1 1 ATOM 57 C C2 . DG A 1 3 ? 29.085 5.144 40.591 1.00 18.88 ? 3 DG A C2 1 ATOM 58 N N2 . DG A 1 3 ? 28.520 6.344 40.727 1.00 20.26 ? 3 DG A N2 1 ATOM 59 N N3 . DG A 1 3 ? 28.307 4.145 40.166 1.00 17.02 ? 3 DG A N3 1 ATOM 60 C C4 . DG A 1 3 ? 29.027 2.993 40.057 1.00 20.86 ? 3 DG A C4 1 ATOM 61 P P . DA A 1 4 ? 24.540 1.230 35.970 1.00 24.80 ? 4 DA A P 1 ATOM 62 O OP1 . DA A 1 4 ? 23.082 1.084 35.747 1.00 29.00 ? 4 DA A OP1 1 ATOM 63 O OP2 . DA A 1 4 ? 25.543 0.422 35.226 1.00 30.41 ? 4 DA A OP2 1 ATOM 64 O "O5'" . DA A 1 4 ? 24.861 2.788 35.795 1.00 25.68 ? 4 DA A "O5'" 1 ATOM 65 C "C5'" . DA A 1 4 ? 24.020 3.747 36.369 1.00 29.16 ? 4 DA A "C5'" 1 ATOM 66 C "C4'" . DA A 1 4 ? 24.813 5.042 36.433 1.00 23.15 ? 4 DA A "C4'" 1 ATOM 67 O "O4'" . DA A 1 4 ? 25.942 4.841 37.283 1.00 21.07 ? 4 DA A "O4'" 1 ATOM 68 C "C3'" . DA A 1 4 ? 25.452 5.543 35.151 1.00 21.19 ? 4 DA A "C3'" 1 ATOM 69 O "O3'" . DA A 1 4 ? 24.484 6.289 34.464 1.00 26.36 ? 4 DA A "O3'" 1 ATOM 70 C "C2'" . DA A 1 4 ? 26.521 6.508 35.672 1.00 19.56 ? 4 DA A "C2'" 1 ATOM 71 C "C1'" . DA A 1 4 ? 26.909 5.818 36.966 1.00 26.08 ? 4 DA A "C1'" 1 ATOM 72 N N9 . DA A 1 4 ? 28.138 5.069 36.934 1.00 21.90 ? 4 DA A N9 1 ATOM 73 C C8 . DA A 1 4 ? 28.290 3.764 36.603 1.00 22.76 ? 4 DA A C8 1 ATOM 74 N N7 . DA A 1 4 ? 29.548 3.404 36.717 1.00 22.59 ? 4 DA A N7 1 ATOM 75 C C5 . DA A 1 4 ? 30.232 4.521 37.154 1.00 23.58 ? 4 DA A C5 1 ATOM 76 C C6 . DA A 1 4 ? 31.579 4.760 37.454 1.00 21.81 ? 4 DA A C6 1 ATOM 77 N N6 . DA A 1 4 ? 32.501 3.806 37.354 1.00 31.49 ? 4 DA A N6 1 ATOM 78 N N1 . DA A 1 4 ? 31.927 5.993 37.849 1.00 27.36 ? 4 DA A N1 1 ATOM 79 C C2 . DA A 1 4 ? 30.976 6.925 37.953 1.00 36.42 ? 4 DA A C2 1 ATOM 80 N N3 . DA A 1 4 ? 29.678 6.798 37.693 1.00 33.71 ? 4 DA A N3 1 ATOM 81 C C4 . DA A 1 4 ? 29.376 5.566 37.295 1.00 23.42 ? 4 DA A C4 1 ATOM 82 P P A DA A 1 5 ? 24.231 6.038 32.895 0.50 21.79 ? 5 DA A P 1 ATOM 83 P P B DA A 1 5 ? 24.152 6.028 32.917 0.50 58.45 ? 5 DA A P 1 ATOM 84 O OP1 A DA A 1 5 ? 23.121 6.948 32.532 0.50 53.71 ? 5 DA A OP1 1 ATOM 85 O OP1 B DA A 1 5 ? 22.846 6.708 32.701 0.50 35.12 ? 5 DA A OP1 1 ATOM 86 O OP2 A DA A 1 5 ? 24.141 4.574 32.683 0.50 54.81 ? 5 DA A OP2 1 ATOM 87 O OP2 B DA A 1 5 ? 24.360 4.600 32.589 0.50 31.54 ? 5 DA A OP2 1 ATOM 88 O "O5'" A DA A 1 5 ? 25.601 6.489 32.246 0.50 24.72 ? 5 DA A "O5'" 1 ATOM 89 O "O5'" B DA A 1 5 ? 25.209 6.959 32.241 0.50 46.18 ? 5 DA A "O5'" 1 ATOM 90 C "C5'" A DA A 1 5 ? 26.015 7.856 32.169 0.50 54.51 ? 5 DA A "C5'" 1 ATOM 91 C "C5'" B DA A 1 5 ? 26.358 6.528 31.621 0.50 74.06 ? 5 DA A "C5'" 1 ATOM 92 C "C4'" A DA A 1 5 ? 27.007 8.085 31.030 0.50 71.52 ? 5 DA A "C4'" 1 ATOM 93 C "C4'" B DA A 1 5 ? 26.945 7.769 30.995 0.50 38.88 ? 5 DA A "C4'" 1 ATOM 94 O "O4'" A DA A 1 5 ? 28.143 7.191 31.125 0.50 43.91 ? 5 DA A "O4'" 1 ATOM 95 O "O4'" B DA A 1 5 ? 28.379 7.601 31.014 0.50 32.26 ? 5 DA A "O4'" 1 ATOM 96 C "C3'" A DA A 1 5 ? 26.539 8.005 29.583 0.50 70.09 ? 5 DA A "C3'" 1 ATOM 97 C "C3'" B DA A 1 5 ? 26.564 7.958 29.539 0.50 67.82 ? 5 DA A "C3'" 1 ATOM 98 O "O3'" A DA A 1 5 ? 26.939 9.255 29.001 0.50 27.13 ? 5 DA A "O3'" 1 ATOM 99 O "O3'" B DA A 1 5 ? 26.948 9.268 29.059 0.50 30.82 ? 5 DA A "O3'" 1 ATOM 100 C "C2'" A DA A 1 5 ? 27.333 6.842 28.998 0.50 24.72 ? 5 DA A "C2'" 1 ATOM 101 C "C2'" B DA A 1 5 ? 27.406 6.852 28.949 0.50 38.37 ? 5 DA A "C2'" 1 ATOM 102 C "C1'" A DA A 1 5 ? 28.599 6.938 29.828 0.50 41.47 ? 5 DA A "C1'" 1 ATOM 103 C "C1'" B DA A 1 5 ? 28.685 7.022 29.763 0.50 21.74 ? 5 DA A "C1'" 1 ATOM 104 N N9 A DA A 1 5 ? 29.435 5.765 29.919 0.50 34.78 ? 5 DA A N9 1 ATOM 105 N N9 B DA A 1 5 ? 29.451 5.812 29.913 0.50 21.53 ? 5 DA A N9 1 ATOM 106 C C8 A DA A 1 5 ? 29.090 4.461 29.768 0.50 30.19 ? 5 DA A C8 1 ATOM 107 C C8 B DA A 1 5 ? 29.024 4.536 29.762 0.50 35.25 ? 5 DA A C8 1 ATOM 108 N N7 A DA A 1 5 ? 30.096 3.642 29.919 0.50 46.04 ? 5 DA A N7 1 ATOM 109 N N7 B DA A 1 5 ? 29.972 3.656 29.923 0.50 29.57 ? 5 DA A N7 1 ATOM 110 C C5 A DA A 1 5 ? 31.168 4.452 30.187 0.50 26.36 ? 5 DA A C5 1 ATOM 111 C C5 B DA A 1 5 ? 31.092 4.403 30.183 0.50 20.50 ? 5 DA A C5 1 ATOM 112 C C6 A DA A 1 5 ? 32.525 4.190 30.426 0.50 29.98 ? 5 DA A C6 1 ATOM 113 C C6 B DA A 1 5 ? 32.432 4.062 30.425 0.50 29.47 ? 5 DA A C6 1 ATOM 114 N N6 A DA A 1 5 ? 33.058 2.969 30.445 0.50 41.66 ? 5 DA A N6 1 ATOM 115 N N6 B DA A 1 5 ? 32.893 2.812 30.463 0.50 52.48 ? 5 DA A N6 1 ATOM 116 N N1 A DA A 1 5 ? 33.320 5.245 30.659 0.50 41.10 ? 5 DA A N1 1 ATOM 117 N N1 B DA A 1 5 ? 33.290 5.067 30.647 0.50 34.01 ? 5 DA A N1 1 ATOM 118 C C2 A DA A 1 5 ? 32.792 6.477 30.666 0.50 20.11 ? 5 DA A C2 1 ATOM 119 C C2 B DA A 1 5 ? 32.843 6.336 30.642 0.50 29.56 ? 5 DA A C2 1 ATOM 120 N N3 A DA A 1 5 ? 31.535 6.842 30.435 0.50 30.36 ? 5 DA A N3 1 ATOM 121 N N3 B DA A 1 5 ? 31.610 6.776 30.408 0.50 36.53 ? 5 DA A N3 1 ATOM 122 C C4 A DA A 1 5 ? 30.775 5.767 30.210 0.50 25.55 ? 5 DA A C4 1 ATOM 123 C C4 B DA A 1 5 ? 30.789 5.741 30.194 0.50 26.70 ? 5 DA A C4 1 ATOM 124 P P . DA A 1 6 ? 25.911 10.065 28.111 1.00 30.84 ? 6 DA A P 1 ATOM 125 O OP1 . DA A 1 6 ? 24.707 10.378 28.918 1.00 38.77 ? 6 DA A OP1 1 ATOM 126 O OP2 . DA A 1 6 ? 25.708 9.319 26.846 1.00 32.69 ? 6 DA A OP2 1 ATOM 127 O "O5'" . DA A 1 6 ? 26.730 11.398 27.826 1.00 25.76 ? 6 DA A "O5'" 1 ATOM 128 C "C5'" . DA A 1 6 ? 26.855 12.367 28.830 1.00 30.92 ? 6 DA A "C5'" 1 ATOM 129 C "C4'" . DA A 1 6 ? 27.014 13.647 28.065 1.00 28.30 ? 6 DA A "C4'" 1 ATOM 130 O "O4'" . DA A 1 6 ? 28.289 13.668 27.348 1.00 26.45 ? 6 DA A "O4'" 1 ATOM 131 C "C3'" . DA A 1 6 ? 25.937 13.907 27.027 1.00 21.54 ? 6 DA A "C3'" 1 ATOM 132 O "O3'" . DA A 1 6 ? 25.683 15.289 27.212 1.00 31.55 ? 6 DA A "O3'" 1 ATOM 133 C "C2'" . DA A 1 6 ? 26.621 13.596 25.692 1.00 19.64 ? 6 DA A "C2'" 1 ATOM 134 C "C1'" . DA A 1 6 ? 28.079 13.920 25.959 1.00 23.12 ? 6 DA A "C1'" 1 ATOM 135 N N9 . DA A 1 6 ? 29.075 13.075 25.315 1.00 22.93 ? 6 DA A N9 1 ATOM 136 C C8 . DA A 1 6 ? 29.006 11.732 25.035 1.00 20.93 ? 6 DA A C8 1 ATOM 137 N N7 . DA A 1 6 ? 30.116 11.261 24.507 1.00 19.11 ? 6 DA A N7 1 ATOM 138 C C5 . DA A 1 6 ? 30.964 12.370 24.487 1.00 17.52 ? 6 DA A C5 1 ATOM 139 C C6 . DA A 1 6 ? 32.296 12.539 24.094 1.00 19.96 ? 6 DA A C6 1 ATOM 140 N N6 . DA A 1 6 ? 33.041 11.550 23.575 1.00 17.05 ? 6 DA A N6 1 ATOM 141 N N1 . DA A 1 6 ? 32.829 13.761 24.196 1.00 20.45 ? 6 DA A N1 1 ATOM 142 C C2 . DA A 1 6 ? 32.099 14.752 24.712 1.00 21.02 ? 6 DA A C2 1 ATOM 143 N N3 . DA A 1 6 ? 30.844 14.724 25.128 1.00 24.33 ? 6 DA A N3 1 ATOM 144 C C4 . DA A 1 6 ? 30.330 13.494 24.989 1.00 16.92 ? 6 DA A C4 1 ATOM 145 P P . DG A 1 7 ? 24.668 16.147 26.316 1.00 29.25 ? 7 DG A P 1 ATOM 146 O OP1 . DG A 1 7 ? 24.422 17.415 27.089 1.00 49.02 ? 7 DG A OP1 1 ATOM 147 O OP2 . DG A 1 7 ? 23.536 15.245 25.965 1.00 27.08 ? 7 DG A OP2 1 ATOM 148 O "O5'" . DG A 1 7 ? 25.473 16.576 25.036 1.00 26.60 ? 7 DG A "O5'" 1 ATOM 149 C "C5'" . DG A 1 7 ? 26.636 17.358 25.143 1.00 27.47 ? 7 DG A "C5'" 1 ATOM 150 C "C4'" . DG A 1 7 ? 27.332 17.303 23.816 1.00 31.45 ? 7 DG A "C4'" 1 ATOM 151 O "O4'" . DG A 1 7 ? 27.932 16.001 23.562 1.00 28.49 ? 7 DG A "O4'" 1 ATOM 152 C "C3'" . DG A 1 7 ? 26.403 17.543 22.635 1.00 30.98 ? 7 DG A "C3'" 1 ATOM 153 O "O3'" . DG A 1 7 ? 26.813 18.780 22.144 1.00 34.88 ? 7 DG A "O3'" 1 ATOM 154 C "C2'" . DG A 1 7 ? 26.689 16.436 21.626 1.00 21.30 ? 7 DG A "C2'" 1 ATOM 155 C "C1'" . DG A 1 7 ? 27.954 15.803 22.169 1.00 22.16 ? 7 DG A "C1'" 1 ATOM 156 N N9 . DG A 1 7 ? 27.960 14.362 21.976 1.00 19.60 ? 7 DG A N9 1 ATOM 157 C C8 . DG A 1 7 ? 26.899 13.491 22.068 1.00 23.45 ? 7 DG A C8 1 ATOM 158 N N7 . DG A 1 7 ? 27.223 12.242 21.821 1.00 22.15 ? 7 DG A N7 1 ATOM 159 C C5 . DG A 1 7 ? 28.583 12.303 21.539 1.00 17.63 ? 7 DG A C5 1 ATOM 160 C C6 . DG A 1 7 ? 29.459 11.258 21.213 1.00 16.37 ? 7 DG A C6 1 ATOM 161 O O6 . DG A 1 7 ? 29.184 10.053 21.103 1.00 20.50 ? 7 DG A O6 1 ATOM 162 N N1 . DG A 1 7 ? 30.753 11.720 21.011 1.00 15.69 ? 7 DG A N1 1 ATOM 163 C C2 . DG A 1 7 ? 31.143 13.017 21.094 1.00 18.97 ? 7 DG A C2 1 ATOM 164 N N2 . DG A 1 7 ? 32.431 13.251 20.838 1.00 18.27 ? 7 DG A N2 1 ATOM 165 N N3 . DG A 1 7 ? 30.331 14.020 21.408 1.00 19.38 ? 7 DG A N3 1 ATOM 166 C C4 . DG A 1 7 ? 29.067 13.580 21.620 1.00 19.13 ? 7 DG A C4 1 ATOM 167 P P . DC A 1 8 ? 26.087 19.542 20.943 1.00 32.03 ? 8 DC A P 1 ATOM 168 O OP1 . DC A 1 8 ? 26.201 20.976 21.349 1.00 38.99 ? 8 DC A OP1 1 ATOM 169 O OP2 . DC A 1 8 ? 24.778 18.894 20.688 1.00 26.84 ? 8 DC A OP2 1 ATOM 170 O "O5'" . DC A 1 8 ? 27.084 19.377 19.735 1.00 29.15 ? 8 DC A "O5'" 1 ATOM 171 C "C5'" . DC A 1 8 ? 28.420 19.749 19.970 1.00 32.79 ? 8 DC A "C5'" 1 ATOM 172 C "C4'" . DC A 1 8 ? 29.367 18.994 19.051 1.00 31.63 ? 8 DC A "C4'" 1 ATOM 173 O "O4'" . DC A 1 8 ? 29.554 17.608 19.469 1.00 21.74 ? 8 DC A "O4'" 1 ATOM 174 C "C3'" . DC A 1 8 ? 28.923 18.859 17.620 1.00 30.76 ? 8 DC A "C3'" 1 ATOM 175 O "O3'" . DC A 1 8 ? 29.194 20.074 16.919 1.00 37.76 ? 8 DC A "O3'" 1 ATOM 176 C "C2'" . DC A 1 8 ? 29.845 17.746 17.124 1.00 30.09 ? 8 DC A "C2'" 1 ATOM 177 C "C1'" . DC A 1 8 ? 30.108 16.918 18.378 1.00 20.83 ? 8 DC A "C1'" 1 ATOM 178 N N1 . DC A 1 8 ? 29.457 15.543 18.325 1.00 17.35 ? 8 DC A N1 1 ATOM 179 C C2 . DC A 1 8 ? 30.284 14.425 18.108 1.00 17.08 ? 8 DC A C2 1 ATOM 180 O O2 . DC A 1 8 ? 31.486 14.566 17.972 1.00 19.45 ? 8 DC A O2 1 ATOM 181 N N3 . DC A 1 8 ? 29.700 13.233 18.054 1.00 16.76 ? 8 DC A N3 1 ATOM 182 C C4 . DC A 1 8 ? 28.390 13.118 18.210 1.00 18.59 ? 8 DC A C4 1 ATOM 183 N N4 . DC A 1 8 ? 27.881 11.896 18.168 1.00 18.11 ? 8 DC A N4 1 ATOM 184 C C5 . DC A 1 8 ? 27.505 14.215 18.439 1.00 18.78 ? 8 DC A C5 1 ATOM 185 C C6 . DC A 1 8 ? 28.109 15.419 18.495 1.00 17.34 ? 8 DC A C6 1 HETATM 186 MG MG . MG B 2 . ? 36.909 0.000 43.143 0.25 25.83 ? 2001 MG A MG 1 HETATM 187 MG MG . MG C 2 . ? 28.829 11.168 42.649 1.00 38.91 ? 1001 MG A MG 1 HETATM 188 O O . HOH D 3 . ? 28.201 9.978 44.208 1.00 35.60 ? 1002 HOH A O 1 HETATM 189 O O . HOH D 3 . ? 30.791 10.772 43.137 1.00 38.75 ? 1003 HOH A O 1 HETATM 190 O O . HOH D 3 . ? 28.848 12.803 43.901 1.00 54.02 ? 1004 HOH A O 1 HETATM 191 O O . HOH D 3 . ? 29.460 12.359 41.091 1.00 48.48 ? 1005 HOH A O 1 HETATM 192 O O . HOH D 3 . ? 26.868 11.559 42.157 1.00 39.52 ? 1006 HOH A O 1 HETATM 193 O O . HOH D 3 . ? 28.813 9.530 41.401 1.00 29.81 ? 1007 HOH A O 1 HETATM 194 O O . HOH D 3 . ? 37.036 0.999 54.302 0.25 58.42 ? 2002 HOH A O 1 HETATM 195 O O . HOH D 3 . ? 18.489 18.442 34.061 0.25 50.34 ? 2003 HOH A O 1 HETATM 196 O O . HOH D 3 . ? 18.436 18.473 38.507 0.25 52.97 ? 2004 HOH A O 1 HETATM 197 O O . HOH D 3 . ? 19.787 16.570 34.409 0.50 47.98 ? 2005 HOH A O 1 HETATM 198 O O . HOH D 3 . ? 31.213 7.517 41.749 1.00 24.18 ? 2006 HOH A O 1 HETATM 199 O O . HOH D 3 . ? 31.695 6.452 44.311 1.00 24.23 ? 2007 HOH A O 1 HETATM 200 O O . HOH D 3 . ? 34.430 7.497 38.455 1.00 26.02 ? 2008 HOH A O 1 HETATM 201 O O . HOH D 3 . ? 35.094 5.041 37.485 1.00 61.81 ? 2009 HOH A O 1 HETATM 202 O O . HOH D 3 . ? 28.194 9.035 38.789 1.00 27.34 ? 2010 HOH A O 1 HETATM 203 O O . HOH D 3 . ? 30.161 16.992 26.437 1.00 44.59 ? 2011 HOH A O 1 HETATM 204 O O . HOH D 3 . ? 34.425 5.684 41.482 1.00 29.30 ? 2012 HOH A O 1 HETATM 205 O O . HOH D 3 . ? 28.133 -3.618 49.386 1.00 31.78 ? 2013 HOH A O 1 HETATM 206 O O . HOH D 3 . ? 36.293 4.990 43.658 1.00 35.10 ? 2014 HOH A O 1 HETATM 207 O O . HOH D 3 . ? 31.445 16.641 21.875 1.00 29.16 ? 2015 HOH A O 1 HETATM 208 O O . HOH D 3 . ? 23.592 13.353 24.080 1.00 47.97 ? 2016 HOH A O 1 HETATM 209 O O . HOH D 3 . ? 22.851 12.866 28.683 1.00 46.64 ? 2017 HOH A O 1 HETATM 210 O O . HOH D 3 . ? 22.333 1.753 41.218 1.00 37.00 ? 2018 HOH A O 1 HETATM 211 O O . HOH D 3 . ? 30.304 7.082 50.524 1.00 37.59 ? 2019 HOH A O 1 HETATM 212 O O . HOH D 3 . ? 24.421 0.762 45.700 1.00 24.94 ? 2020 HOH A O 1 HETATM 213 O O . HOH D 3 . ? 21.055 4.877 30.637 1.00 58.55 ? 2021 HOH A O 1 HETATM 214 O O . HOH D 3 . ? 20.663 3.391 46.932 1.00 29.32 ? 2022 HOH A O 1 HETATM 215 O O . HOH D 3 . ? 29.032 9.151 46.759 1.00 49.35 ? 2023 HOH A O 1 HETATM 216 O O . HOH D 3 . ? 21.549 0.330 39.024 1.00 51.56 ? 2024 HOH A O 1 HETATM 217 O O . HOH D 3 . ? 35.081 4.447 51.235 1.00 44.81 ? 2025 HOH A O 1 HETATM 218 O O . HOH D 3 . ? 21.476 7.185 35.207 1.00 36.65 ? 2026 HOH A O 1 HETATM 219 O O . HOH D 3 . ? 21.500 1.129 45.207 1.00 49.68 ? 2027 HOH A O 1 HETATM 220 O O . HOH D 3 . ? 33.066 4.917 49.449 1.00 43.80 ? 2028 HOH A O 1 HETATM 221 O O . HOH D 3 . ? 31.217 7.660 46.784 1.00 32.35 ? 2029 HOH A O 1 HETATM 222 O O . HOH D 3 . ? 34.065 10.138 32.168 1.00 55.22 ? 2030 HOH A O 1 HETATM 223 O O . HOH D 3 . ? 32.716 3.796 45.299 1.00 34.08 ? 2031 HOH A O 1 HETATM 224 O O . HOH D 3 . ? 31.929 3.937 53.863 1.00 45.93 ? 2032 HOH A O 1 HETATM 225 O O . HOH D 3 . ? 29.800 12.432 38.361 1.00 33.78 ? 2033 HOH A O 1 HETATM 226 O O . HOH D 3 . ? 31.573 10.343 38.587 1.00 34.06 ? 2034 HOH A O 1 HETATM 227 O O . HOH D 3 . ? 27.519 15.153 40.708 1.00 39.18 ? 2035 HOH A O 1 HETATM 228 O O . HOH D 3 . ? 18.888 5.388 53.649 1.00 46.60 ? 2036 HOH A O 1 HETATM 229 O O . HOH D 3 . ? 24.663 10.677 31.864 1.00 34.23 ? 2037 HOH A O 1 HETATM 230 O O . HOH D 3 . ? 38.236 4.402 53.742 1.00 39.86 ? 2038 HOH A O 1 HETATM 231 O O . HOH D 3 . ? 37.792 6.585 36.028 1.00 52.73 ? 2039 HOH A O 1 HETATM 232 O O . HOH D 3 . ? 24.299 -1.698 47.153 1.00 48.28 ? 2040 HOH A O 1 HETATM 233 O O . HOH D 3 . ? 38.965 4.036 43.081 1.00 31.73 ? 2041 HOH A O 1 HETATM 234 O O . HOH D 3 . ? 20.936 2.985 43.217 1.00 40.67 ? 2042 HOH A O 1 HETATM 235 O O . HOH D 3 . ? 26.029 12.534 39.648 1.00 43.21 ? 2043 HOH A O 1 HETATM 236 O O . HOH D 3 . ? 35.716 1.749 43.105 1.00 35.10 ? 2044 HOH A O 1 HETATM 237 O O . HOH D 3 . ? 38.222 9.077 34.004 1.00 49.53 ? 2045 HOH A O 1 HETATM 238 O O . HOH D 3 . ? 32.112 9.002 31.382 1.00 59.88 ? 2046 HOH A O 1 HETATM 239 O O . HOH D 3 . ? 20.857 2.127 36.918 1.00 46.46 ? 2047 HOH A O 1 HETATM 240 O O . HOH D 3 . ? 21.841 17.121 24.785 1.00 70.43 ? 2048 HOH A O 1 HETATM 241 O O . HOH D 3 . ? 33.620 9.530 37.361 1.00 40.22 ? 2049 HOH A O 1 HETATM 242 O O . HOH D 3 . ? 35.985 2.231 31.257 1.00 63.77 ? 2050 HOH A O 1 HETATM 243 O O . HOH D 3 . ? 35.386 1.882 52.096 1.00 70.93 ? 2051 HOH A O 1 HETATM 244 O O . HOH D 3 . ? 21.537 3.409 33.386 1.00 74.60 ? 2052 HOH A O 1 HETATM 245 O O . HOH D 3 . ? 35.878 3.386 55.408 1.00 59.54 ? 2053 HOH A O 1 HETATM 246 O O . HOH D 3 . ? 20.049 4.561 35.864 1.00 51.32 ? 2054 HOH A O 1 HETATM 247 O O . HOH D 3 . ? 22.472 12.643 33.774 1.00 59.47 ? 2055 HOH A O 1 HETATM 248 O O . HOH D 3 . ? 18.211 3.452 38.888 1.00 64.99 ? 2056 HOH A O 1 HETATM 249 O O . HOH D 3 . ? 24.525 0.199 56.077 1.00 47.36 ? 2057 HOH A O 1 HETATM 250 O O . HOH D 3 . ? 19.608 13.989 34.687 1.00 64.15 ? 2058 HOH A O 1 HETATM 251 O O . HOH D 3 . ? 31.249 14.570 44.774 0.50 33.69 ? 2059 HOH A O 1 HETATM 252 O O . HOH D 3 . ? 31.518 4.962 51.547 0.50 18.20 ? 2060 HOH A O 1 HETATM 253 O O . HOH D 3 . ? 32.397 7.983 51.858 0.50 24.71 ? 2061 HOH A O 1 HETATM 254 O O . HOH D 3 . ? 38.962 14.146 20.882 0.50 36.56 ? 2062 HOH A O 1 HETATM 255 O O . HOH D 3 . ? 22.439 9.517 33.054 1.00 74.86 ? 2063 HOH A O 1 HETATM 256 O O . HOH D 3 . ? 34.076 5.372 54.820 0.50 78.44 ? 2064 HOH A O 1 HETATM 257 O O . HOH D 3 . ? 32.312 10.290 48.289 0.50 74.19 ? 2065 HOH A O 1 HETATM 258 O O . HOH D 3 . ? 30.342 1.440 30.140 1.00 74.88 ? 2066 HOH A O 1 HETATM 259 O O . HOH D 3 . ? 28.314 1.175 29.240 1.00 61.94 ? 2067 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG DG A . n A 1 2 DC 2 2 2 DC DC A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DG 7 7 7 DG DG A . n A 1 8 DC 8 8 8 DC DC A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 2001 2001 MG MG A . C 2 MG 1 1001 1001 MG MG A . D 3 HOH 1 1002 1002 HOH HOH A . D 3 HOH 2 1003 1003 HOH HOH A . D 3 HOH 3 1004 1004 HOH HOH A . D 3 HOH 4 1005 1005 HOH HOH A . D 3 HOH 5 1006 1006 HOH HOH A . D 3 HOH 6 1007 1007 HOH HOH A . D 3 HOH 7 2002 2002 HOH HOH A . D 3 HOH 8 2003 2003 HOH HOH A . D 3 HOH 9 2004 2004 HOH HOH A . D 3 HOH 10 2005 2005 HOH HOH A . D 3 HOH 11 2006 2006 HOH HOH A . D 3 HOH 12 2007 2007 HOH HOH A . D 3 HOH 13 2008 2008 HOH HOH A . D 3 HOH 14 2009 2009 HOH HOH A . D 3 HOH 15 2010 2010 HOH HOH A . D 3 HOH 16 2011 2011 HOH HOH A . D 3 HOH 17 2012 2012 HOH HOH A . D 3 HOH 18 2013 2013 HOH HOH A . D 3 HOH 19 2014 2014 HOH HOH A . D 3 HOH 20 2015 2015 HOH HOH A . D 3 HOH 21 2016 2016 HOH HOH A . D 3 HOH 22 2017 2017 HOH HOH A . D 3 HOH 23 2018 2018 HOH HOH A . D 3 HOH 24 2019 2019 HOH HOH A . D 3 HOH 25 2020 2020 HOH HOH A . D 3 HOH 26 2021 2021 HOH HOH A . D 3 HOH 27 2022 2022 HOH HOH A . D 3 HOH 28 2023 2023 HOH HOH A . D 3 HOH 29 2024 2024 HOH HOH A . D 3 HOH 30 2025 2025 HOH HOH A . D 3 HOH 31 2026 2026 HOH HOH A . D 3 HOH 32 2027 2027 HOH HOH A . D 3 HOH 33 2028 2028 HOH HOH A . D 3 HOH 34 2029 2029 HOH HOH A . D 3 HOH 35 2030 2030 HOH HOH A . D 3 HOH 36 2031 2031 HOH HOH A . D 3 HOH 37 2032 2032 HOH HOH A . D 3 HOH 38 2033 2033 HOH HOH A . D 3 HOH 39 2034 2034 HOH HOH A . D 3 HOH 40 2035 2035 HOH HOH A . D 3 HOH 41 2036 2036 HOH HOH A . D 3 HOH 42 2037 2037 HOH HOH A . D 3 HOH 43 2038 2038 HOH HOH A . D 3 HOH 44 2039 2039 HOH HOH A . D 3 HOH 45 2040 2040 HOH HOH A . D 3 HOH 46 2041 2041 HOH HOH A . D 3 HOH 47 2042 2042 HOH HOH A . D 3 HOH 48 2043 2043 HOH HOH A . D 3 HOH 49 2044 2044 HOH HOH A . D 3 HOH 50 2045 2045 HOH HOH A . D 3 HOH 51 2046 2046 HOH HOH A . D 3 HOH 52 2047 2047 HOH HOH A . D 3 HOH 53 2048 2048 HOH HOH A . D 3 HOH 54 2049 2049 HOH HOH A . D 3 HOH 55 2050 2050 HOH HOH A . D 3 HOH 56 2051 2051 HOH HOH A . D 3 HOH 57 2052 2052 HOH HOH A . D 3 HOH 58 2053 2053 HOH HOH A . D 3 HOH 59 2054 2054 HOH HOH A . D 3 HOH 60 2055 2055 HOH HOH A . D 3 HOH 61 2056 2056 HOH HOH A . D 3 HOH 62 2057 2057 HOH HOH A . D 3 HOH 63 2058 2058 HOH HOH A . D 3 HOH 64 2059 2059 HOH HOH A . D 3 HOH 65 2060 2060 HOH HOH A . D 3 HOH 66 2061 2061 HOH HOH A . D 3 HOH 67 2062 2062 HOH HOH A . D 3 HOH 68 2063 2063 HOH HOH A . D 3 HOH 69 2064 2064 HOH HOH A . D 3 HOH 70 2065 2065 HOH HOH A . D 3 HOH 71 2066 2066 HOH HOH A . D 3 HOH 72 2067 2067 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details octameric _pdbx_struct_assembly.oligomeric_count 8 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6,7,8 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_755 -x+2,-y,z -1.0000000000 0.0000000000 0.0000000000 73.8180000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_645 -y+1,x-1,z 0.0000000000 -1.0000000000 0.0000000000 36.9090000000 1.0000000000 0.0000000000 0.0000000000 -36.9090000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_665 y+1,-x+1,z 0.0000000000 1.0000000000 0.0000000000 36.9090000000 -1.0000000000 0.0000000000 0.0000000000 36.9090000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 5 'crystal symmetry operation' 5_756 -x+2,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 73.8180000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.3370000000 6 'crystal symmetry operation' 6_556 x,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 64.3370000000 7 'crystal symmetry operation' 7_646 y+1,x-1,-z+1 0.0000000000 1.0000000000 0.0000000000 36.9090000000 1.0000000000 0.0000000000 0.0000000000 -36.9090000000 0.0000000000 0.0000000000 -1.0000000000 64.3370000000 8 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0.0000000000 -1.0000000000 0.0000000000 36.9090000000 -1.0000000000 0.0000000000 0.0000000000 36.9090000000 0.0000000000 0.0000000000 -1.0000000000 64.3370000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 2001 ? B MG . 2 1 A HOH 2003 ? D HOH . 3 1 A HOH 2004 ? D HOH . # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1003 ? 1_555 90.0 ? 2 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1004 ? 1_555 90.1 ? 3 O ? D HOH . ? A HOH 1003 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1004 ? 1_555 90.0 ? 4 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1005 ? 1_555 179.9 ? 5 O ? D HOH . ? A HOH 1003 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1005 ? 1_555 89.9 ? 6 O ? D HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1005 ? 1_555 89.9 ? 7 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1006 ? 1_555 90.0 ? 8 O ? D HOH . ? A HOH 1003 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1006 ? 1_555 179.8 ? 9 O ? D HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1006 ? 1_555 90.2 ? 10 O ? D HOH . ? A HOH 1005 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1006 ? 1_555 90.1 ? 11 O ? D HOH . ? A HOH 1002 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1007 ? 1_555 89.8 ? 12 O ? D HOH . ? A HOH 1003 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1007 ? 1_555 89.9 ? 13 O ? D HOH . ? A HOH 1004 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1007 ? 1_555 179.8 ? 14 O ? D HOH . ? A HOH 1005 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1007 ? 1_555 90.2 ? 15 O ? D HOH . ? A HOH 1006 ? 1_555 MG ? C MG . ? A MG 1001 ? 1_555 O ? D HOH . ? A HOH 1007 ? 1_555 89.9 ? 16 O ? D HOH . ? A HOH 2044 ? 1_555 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 4_665 90.0 ? 17 O ? D HOH . ? A HOH 2044 ? 1_555 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 2_755 177.9 ? 18 O ? D HOH . ? A HOH 2044 ? 4_665 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 2_755 90.0 ? 19 O ? D HOH . ? A HOH 2044 ? 1_555 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 3_645 90.0 ? 20 O ? D HOH . ? A HOH 2044 ? 4_665 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 3_645 177.9 ? 21 O ? D HOH . ? A HOH 2044 ? 2_755 MG ? B MG . ? A MG 2001 ? 1_555 O ? D HOH . ? A HOH 2044 ? 3_645 90.0 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-08-14 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2023-10-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' 'Derived calculations' 5 3 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' chem_comp_atom 2 3 'Structure model' chem_comp_bond 3 3 'Structure model' database_2 4 3 'Structure model' pdbx_initial_refinement_model 5 3 'Structure model' pdbx_struct_conn_angle 6 3 'Structure model' struct_conn 7 3 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_database_2.pdbx_DOI' 2 3 'Structure model' '_database_2.pdbx_database_accession' 3 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 3 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 5 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 6 3 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 7 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 3 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 9 3 'Structure model' '_pdbx_struct_conn_angle.value' 10 3 'Structure model' '_struct_conn.pdbx_dist_value' 11 3 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 12 3 'Structure model' '_struct_conn.ptnr1_label_asym_id' 13 3 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 14 3 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 3 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 3 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 HKL-2000 'data collection' . ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 AMoRE phasing . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 103.29 108.00 -4.71 0.70 N 2 1 N7 A DA 4 ? ? C8 A DA 4 ? ? N9 A DA 4 ? ? 110.50 113.80 -3.30 0.50 N 3 1 "O4'" A DA 5 ? B "C1'" A DA 5 ? B N9 A DA 5 ? B 111.57 108.30 3.27 0.30 N 4 1 "O5'" A DA 6 ? ? "C5'" A DA 6 ? ? "C4'" A DA 6 ? ? 103.55 109.40 -5.85 0.80 N 5 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 103.14 108.00 -4.86 0.70 N 6 1 N3 A DC 8 ? ? C4 A DC 8 ? ? C5 A DC 8 ? ? 124.42 121.90 2.52 0.40 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 HOH O O N N 108 HOH H1 H N N 109 HOH H2 H N N 110 MG MG MG N N 111 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 HOH O H1 sing N N 113 HOH O H2 sing N N 114 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2DZ7 'b-form double helix' 2DZ7 'mismatched base pair' 2DZ7 'internal loop' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 8_666 -0.292 -0.120 -0.035 -1.738 3.525 -2.173 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 8_666 0.164 -0.106 -0.252 13.533 5.894 -1.769 2 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 8_666 6.530 -4.369 1.104 29.762 -9.721 9.728 3 A_DG3:DA6_A A 3 ? A 6 ? 11 9 1 A DG 1 1_555 A DC 8 1_555 -0.292 -0.120 -0.035 -1.738 3.525 -2.173 4 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DC 2 1_555 A DG 7 1_555 0.164 -0.106 -0.252 13.533 5.894 -1.769 5 A_DC2:DG7_A A 2 ? A 7 ? 19 1 1 A DG 3 1_555 A DA 6 1_555 6.530 -4.369 1.104 29.762 -9.721 9.728 6 A_DG3:DA6_A A 3 ? A 6 ? 11 9 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 8_666 A DC 2 1_555 A DG 7 8_666 0.018 -0.055 3.042 1.882 0.266 27.313 -0.177 0.395 3.036 0.563 -3.980 27.378 1 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 8_666 A DG 3 1_555 A DA 6 8_666 0.526 1.668 3.074 0.700 8.164 55.965 1.315 -0.517 3.274 8.648 -0.741 56.514 2 AA_DC2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 1 1_555 A DC 8 1_555 A DC 2 1_555 A DG 7 1_555 0.018 -0.055 3.042 1.882 0.266 27.313 -0.177 0.395 3.036 0.563 -3.980 27.378 3 AA_DG1DC2:DG7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DC 2 1_555 A DG 7 1_555 A DG 3 1_555 A DA 6 1_555 0.526 1.668 3.074 0.700 8.164 55.965 1.315 -0.517 3.274 8.647 -0.741 56.514 4 AA_DC2DG3:DA6DG7_AA A 2 ? A 7 ? A 3 ? A 6 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1UE3 _pdbx_initial_refinement_model.details '1UE3(PDB code)' #