0.035777
0.000000
0.002200
0.000000
0.019185
0.000000
0.000000
0.000000
0.029647
0.00000
0.00000
0.00000
Ming, H.
Tanokura, M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
2
90.00
93.52
90.00
27.951
52.123
33.794
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Proteins
PSFGEY
0867
0887-3585
69
204
208
10.1002/prot.21467
17557330
Crystal structure of thioredoxin domain of ST2123 from thermophilic archaea Sulfolobus tokodaii strain7
2007
10.2210/pdb2e0q/pdb
pdb_00002e0q
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
SINGLE WAVELENGTH
M
x-ray
1
1
1.0
BL41XU
SPring-8
1
SYNCHROTRON
SPRING-8 BEAMLINE BL41XU
11624.176
thioredoxin
Residues 37-140
K53E
1
man
polymer
18.015
water
114
nat
water
no
no
VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE
PVDEIIGAVPREEIEIRIKNLLGE
VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE
PVDEIIGAVPREEIEIRIKNLLGE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
strain7
Escherichia
sample
111955
Sulfolobus tokodaii
562
Escherichia coli
PLASMID
pET28a
1
2.11
41.77
VAPOR DIFFUSION, SITTING DROP
8.0
16% PEG-3000, 0.1M acetate (pH 4.1), 25% glycerol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K
293.0
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Database references
1
0
2007-10-02
1
1
2011-07-13
1
2
2021-11-10
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
PDBJ
Y
PDBJ
2006-10-11
REL
REL
HOH
water
HOH
1
2
HOH
HOH
141
A
HOH
2
2
HOH
HOH
142
A
HOH
3
2
HOH
HOH
143
A
HOH
4
2
HOH
HOH
144
A
HOH
5
2
HOH
HOH
145
A
HOH
6
2
HOH
HOH
146
A
HOH
7
2
HOH
HOH
147
A
HOH
8
2
HOH
HOH
148
A
HOH
9
2
HOH
HOH
149
A
HOH
10
2
HOH
HOH
150
A
HOH
11
2
HOH
HOH
151
A
HOH
12
2
HOH
HOH
152
A
HOH
13
2
HOH
HOH
153
A
HOH
14
2
HOH
HOH
154
A
HOH
15
2
HOH
HOH
155
A
HOH
16
2
HOH
HOH
156
A
HOH
17
2
HOH
HOH
157
A
HOH
18
2
HOH
HOH
158
A
HOH
19
2
HOH
HOH
159
A
HOH
20
2
HOH
HOH
160
A
HOH
21
2
HOH
HOH
161
A
HOH
22
2
HOH
HOH
162
A
HOH
23
2
HOH
HOH
163
A
HOH
24
2
HOH
HOH
164
A
HOH
25
2
HOH
HOH
165
A
HOH
26
2
HOH
HOH
166
A
HOH
27
2
HOH
HOH
167
A
HOH
28
2
HOH
HOH
168
A
HOH
29
2
HOH
HOH
169
A
HOH
30
2
HOH
HOH
170
A
HOH
31
2
HOH
HOH
171
A
HOH
32
2
HOH
HOH
172
A
HOH
33
2
HOH
HOH
173
A
HOH
34
2
HOH
HOH
174
A
HOH
35
2
HOH
HOH
175
A
HOH
36
2
HOH
HOH
176
A
HOH
37
2
HOH
HOH
177
A
HOH
38
2
HOH
HOH
178
A
HOH
39
2
HOH
HOH
179
A
HOH
40
2
HOH
HOH
180
A
HOH
41
2
HOH
HOH
181
A
HOH
42
2
HOH
HOH
182
A
HOH
43
2
HOH
HOH
183
A
HOH
44
2
HOH
HOH
184
A
HOH
45
2
HOH
HOH
185
A
HOH
46
2
HOH
HOH
186
A
HOH
47
2
HOH
HOH
187
A
HOH
48
2
HOH
HOH
188
A
HOH
49
2
HOH
HOH
189
A
HOH
50
2
HOH
HOH
190
A
HOH
51
2
HOH
HOH
191
A
HOH
52
2
HOH
HOH
192
A
HOH
53
2
HOH
HOH
193
A
HOH
54
2
HOH
HOH
194
A
HOH
55
2
HOH
HOH
195
A
HOH
56
2
HOH
HOH
196
A
HOH
57
2
HOH
HOH
197
A
HOH
58
2
HOH
HOH
198
A
HOH
59
2
HOH
HOH
199
A
HOH
60
2
HOH
HOH
200
A
HOH
61
2
HOH
HOH
201
A
HOH
62
2
HOH
HOH
202
A
HOH
63
2
HOH
HOH
203
A
HOH
64
2
HOH
HOH
204
A
HOH
65
2
HOH
HOH
205
A
HOH
66
2
HOH
HOH
206
A
HOH
67
2
HOH
HOH
207
A
HOH
68
2
HOH
HOH
208
A
HOH
69
2
HOH
HOH
209
A
HOH
70
2
HOH
HOH
210
A
HOH
71
2
HOH
HOH
211
A
HOH
72
2
HOH
HOH
212
A
HOH
73
2
HOH
HOH
213
A
HOH
74
2
HOH
HOH
214
A
HOH
75
2
HOH
HOH
215
A
HOH
76
2
HOH
HOH
216
A
HOH
77
2
HOH
HOH
217
A
HOH
78
2
HOH
HOH
218
A
HOH
79
2
HOH
HOH
219
A
HOH
80
2
HOH
HOH
220
A
HOH
81
2
HOH
HOH
221
A
HOH
82
2
HOH
HOH
222
A
HOH
83
2
HOH
HOH
223
A
HOH
84
2
HOH
HOH
224
A
HOH
85
2
HOH
HOH
225
A
HOH
86
2
HOH
HOH
226
A
HOH
87
2
HOH
HOH
227
A
HOH
88
2
HOH
HOH
228
A
HOH
89
2
HOH
HOH
229
A
HOH
90
2
HOH
HOH
230
A
HOH
91
2
HOH
HOH
231
A
HOH
92
2
HOH
HOH
232
A
HOH
93
2
HOH
HOH
233
A
HOH
94
2
HOH
HOH
234
A
HOH
95
2
HOH
HOH
235
A
HOH
96
2
HOH
HOH
236
A
HOH
97
2
HOH
HOH
237
A
HOH
98
2
HOH
HOH
238
A
HOH
99
2
HOH
HOH
239
A
HOH
100
2
HOH
HOH
240
A
HOH
101
2
HOH
HOH
241
A
HOH
102
2
HOH
HOH
242
A
HOH
103
2
HOH
HOH
243
A
HOH
104
2
HOH
HOH
244
A
HOH
105
2
HOH
HOH
245
A
HOH
106
2
HOH
HOH
246
A
HOH
107
2
HOH
HOH
247
A
HOH
108
2
HOH
HOH
248
A
HOH
109
2
HOH
HOH
249
A
HOH
110
2
HOH
HOH
250
A
HOH
111
2
HOH
HOH
251
A
HOH
112
2
HOH
HOH
252
A
HOH
113
2
HOH
HOH
253
A
HOH
114
2
HOH
HOH
254
A
VAL
37
n
1
VAL
37
A
ILE
38
n
2
ILE
38
A
HIS
39
n
3
HIS
39
A
LEU
40
n
4
LEU
40
A
ASP
41
n
5
ASP
41
A
SER
42
n
6
SER
42
A
LYS
43
n
7
LYS
43
A
ASN
44
n
8
ASN
44
A
PHE
45
n
9
PHE
45
A
ASP
46
n
10
ASP
46
A
SER
47
n
11
SER
47
A
PHE
48
n
12
PHE
48
A
LEU
49
n
13
LEU
49
A
ALA
50
n
14
ALA
50
A
SER
51
n
15
SER
51
A
HIS
52
n
16
HIS
52
A
GLU
53
n
17
GLU
53
A
ILE
54
n
18
ILE
54
A
ALA
55
n
19
ALA
55
A
VAL
56
n
20
VAL
56
A
VAL
57
n
21
VAL
57
A
ASP
58
n
22
ASP
58
A
PHE
59
n
23
PHE
59
A
TRP
60
n
24
TRP
60
A
ALA
61
n
25
ALA
61
A
GLU
62
n
26
GLU
62
A
TRP
63
n
27
TRP
63
A
CYS
64
n
28
CYS
64
A
ALA
65
n
29
ALA
65
A
PRO
66
n
30
PRO
66
A
CYS
67
n
31
CYS
67
A
LEU
68
n
32
LEU
68
A
ILE
69
n
33
ILE
69
A
LEU
70
n
34
LEU
70
A
ALA
71
n
35
ALA
71
A
PRO
72
n
36
PRO
72
A
ILE
73
n
37
ILE
73
A
ILE
74
n
38
ILE
74
A
GLU
75
n
39
GLU
75
A
GLU
76
n
40
GLU
76
A
LEU
77
n
41
LEU
77
A
ALA
78
n
42
ALA
78
A
GLU
79
n
43
GLU
79
A
ASP
80
n
44
ASP
80
A
TYR
81
n
45
TYR
81
A
PRO
82
n
46
PRO
82
A
GLN
83
n
47
GLN
83
A
VAL
84
n
48
VAL
84
A
GLY
85
n
49
GLY
85
A
PHE
86
n
50
PHE
86
A
GLY
87
n
51
GLY
87
A
LYS
88
n
52
LYS
88
A
LEU
89
n
53
LEU
89
A
ASN
90
n
54
ASN
90
A
SER
91
n
55
SER
91
A
ASP
92
n
56
ASP
92
A
GLU
93
n
57
GLU
93
A
ASN
94
n
58
ASN
94
A
PRO
95
n
59
PRO
95
A
ASP
96
n
60
ASP
96
A
ILE
97
n
61
ILE
97
A
ALA
98
n
62
ALA
98
A
ALA
99
n
63
ALA
99
A
ARG
100
n
64
ARG
100
A
TYR
101
n
65
TYR
101
A
GLY
102
n
66
GLY
102
A
VAL
103
n
67
VAL
103
A
MET
104
n
68
MET
104
A
SER
105
n
69
SER
105
A
LEU
106
n
70
LEU
106
A
PRO
107
n
71
PRO
107
A
THR
108
n
72
THR
108
A
VAL
109
n
73
VAL
109
A
ILE
110
n
74
ILE
110
A
PHE
111
n
75
PHE
111
A
PHE
112
n
76
PHE
112
A
LYS
113
n
77
LYS
113
A
ASP
114
n
78
ASP
114
A
GLY
115
n
79
GLY
115
A
GLU
116
n
80
GLU
116
A
PRO
117
n
81
PRO
117
A
VAL
118
n
82
VAL
118
A
ASP
119
n
83
ASP
119
A
GLU
120
n
84
GLU
120
A
ILE
121
n
85
ILE
121
A
ILE
122
n
86
ILE
122
A
GLY
123
n
87
GLY
123
A
ALA
124
n
88
ALA
124
A
VAL
125
n
89
VAL
125
A
PRO
126
n
90
PRO
126
A
ARG
127
n
91
ARG
127
A
GLU
128
n
92
GLU
128
A
GLU
129
n
93
GLU
129
A
ILE
130
n
94
ILE
130
A
GLU
131
n
95
GLU
131
A
ILE
132
n
96
ILE
132
A
ARG
133
n
97
ARG
133
A
ILE
134
n
98
ILE
134
A
LYS
135
n
99
LYS
135
A
ASN
136
n
100
ASN
136
A
LEU
137
n
101
LEU
137
A
LEU
138
n
102
LEU
138
A
GLY
139
n
103
GLY
139
A
GLU
140
n
104
GLU
140
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
38
A
N
ILE
2
A
O
LYS
88
A
O
LYS
52
A
O
GLY
87
A
O
GLY
51
A
N
ASP
58
A
N
ASP
22
A
N
ALA
55
A
N
ALA
19
A
O
PHE
112
A
O
PHE
76
A
N
PHE
111
A
N
PHE
75
A
O
ASP
119
A
O
ASP
83
1
A
A
O
O
HOH
HOH
165
248
2.17
14.866
-0.60
0.00
0.18
-0.21
0.00
0.83
0.966
0.961
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.19185
0.17186
0.17294
1.49
15.00
789
15049
5.0
99.97
1.161
0.045
RANDOM
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.075
0.072
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.49
15.00
114
933
0
0
819
0.015
0.021
840
0.002
0.020
764
1.583
1.962
1145
0.846
3.000
1782
5.653
5.000
103
0.088
0.200
128
0.007
0.020
933
0.002
0.020
160
0.215
0.200
170
0.245
0.200
866
0.086
0.200
479
0.173
0.200
55
0.177
0.200
8
0.225
0.200
37
0.205
0.200
10
0.950
1.500
520
1.740
2.000
844
2.612
3.000
320
3.984
4.500
301
0.284
0.184
1.529
52
1096
20
15.2
1.49
50.0
2E0Q
57836
1
99.9
refinement
REFMAC
5.1.24
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
Crystal structure of K53E thioredoxin from Sulfolobus tokodaii strain7
1
N
N
2
N
N
A
ASN
44
A
ASN
8
HELX_P
A
HIS
52
A
HIS
16
1
1
9
A
CYS
64
A
CYS
28
HELX_P
A
TYR
81
A
TYR
45
1
2
18
A
ASN
94
A
ASN
58
HELX_P
A
TYR
101
A
TYR
65
1
3
8
A
PRO
126
A
PRO
90
HELX_P
A
GLY
139
A
GLY
103
1
4
14
disulf
2.175
A
CYS
64
A
SG
CYS
28
1_555
A
CYS
67
A
SG
CYS
31
1_555
ELECTRON TRANSPORT
thioredoxin, ELECTRON TRANSPORT
A
LEU
106
A
LEU
70
1
A
PRO
107
A
PRO
71
-6.77
Q96YQ0_SULTO
UNP
1
37
Q96YQ0
VIHLDSKNFDSFLASHKIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE
PVDEIIGAVPREEIEIRIKNLLGE
37
140
2E0Q
37
140
Q96YQ0
A
1
1
104
1
LYS
engineered mutation
GLU
53
2E0Q
A
Q96YQ0
UNP
53
17
5
parallel
parallel
anti-parallel
anti-parallel
A
ILE
38
A
ILE
2
A
HIS
39
A
HIS
3
A
GLY
85
A
GLY
49
A
ASN
90
A
ASN
54
A
ILE
54
A
ILE
18
A
TRP
60
A
TRP
24
A
THR
108
A
THR
72
A
LYS
113
A
LYS
77
A
GLU
116
A
GLU
80
A
ILE
122
A
ILE
86
4
P 1 21 1