0.035777 0.000000 0.002200 0.000000 0.019185 0.000000 0.000000 0.000000 0.029647 0.00000 0.00000 0.00000 Ming, H. Tanokura, M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 2 90.00 93.52 90.00 27.951 52.123 33.794 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Proteins PSFGEY 0867 0887-3585 69 204 208 10.1002/prot.21467 17557330 Crystal structure of thioredoxin domain of ST2123 from thermophilic archaea Sulfolobus tokodaii strain7 2007 10.2210/pdb2e0q/pdb pdb_00002e0q 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 SINGLE WAVELENGTH M x-ray 1 1 1.0 BL41XU SPring-8 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 11624.176 thioredoxin Residues 37-140 K53E 1 man polymer 18.015 water 114 nat water no no VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE PVDEIIGAVPREEIEIRIKNLLGE VIHLDSKNFDSFLASHEIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE PVDEIIGAVPREEIEIRIKNLLGE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Sulfolobus strain7 Escherichia sample 111955 Sulfolobus tokodaii 562 Escherichia coli PLASMID pET28a 1 2.11 41.77 VAPOR DIFFUSION, SITTING DROP 8.0 16% PEG-3000, 0.1M acetate (pH 4.1), 25% glycerol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293.0K 293.0 database_2 struct_ref_seq_dif repository Initial release Version format compliance Database references 1 0 2007-10-02 1 1 2011-07-13 1 2 2021-11-10 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details PDBJ Y PDBJ 2006-10-11 REL REL HOH water HOH 1 2 HOH HOH 141 A HOH 2 2 HOH HOH 142 A HOH 3 2 HOH HOH 143 A HOH 4 2 HOH HOH 144 A HOH 5 2 HOH HOH 145 A HOH 6 2 HOH HOH 146 A HOH 7 2 HOH HOH 147 A HOH 8 2 HOH HOH 148 A HOH 9 2 HOH HOH 149 A HOH 10 2 HOH HOH 150 A HOH 11 2 HOH HOH 151 A HOH 12 2 HOH HOH 152 A HOH 13 2 HOH HOH 153 A HOH 14 2 HOH HOH 154 A HOH 15 2 HOH HOH 155 A HOH 16 2 HOH HOH 156 A HOH 17 2 HOH HOH 157 A HOH 18 2 HOH HOH 158 A HOH 19 2 HOH HOH 159 A HOH 20 2 HOH HOH 160 A HOH 21 2 HOH HOH 161 A HOH 22 2 HOH HOH 162 A HOH 23 2 HOH HOH 163 A HOH 24 2 HOH HOH 164 A HOH 25 2 HOH HOH 165 A HOH 26 2 HOH HOH 166 A HOH 27 2 HOH HOH 167 A HOH 28 2 HOH HOH 168 A HOH 29 2 HOH HOH 169 A HOH 30 2 HOH HOH 170 A HOH 31 2 HOH HOH 171 A HOH 32 2 HOH HOH 172 A HOH 33 2 HOH HOH 173 A HOH 34 2 HOH HOH 174 A HOH 35 2 HOH HOH 175 A HOH 36 2 HOH HOH 176 A HOH 37 2 HOH HOH 177 A HOH 38 2 HOH HOH 178 A HOH 39 2 HOH HOH 179 A HOH 40 2 HOH HOH 180 A HOH 41 2 HOH HOH 181 A HOH 42 2 HOH HOH 182 A HOH 43 2 HOH HOH 183 A HOH 44 2 HOH HOH 184 A HOH 45 2 HOH HOH 185 A HOH 46 2 HOH HOH 186 A HOH 47 2 HOH HOH 187 A HOH 48 2 HOH HOH 188 A HOH 49 2 HOH HOH 189 A HOH 50 2 HOH HOH 190 A HOH 51 2 HOH HOH 191 A HOH 52 2 HOH HOH 192 A HOH 53 2 HOH HOH 193 A HOH 54 2 HOH HOH 194 A HOH 55 2 HOH HOH 195 A HOH 56 2 HOH HOH 196 A HOH 57 2 HOH HOH 197 A HOH 58 2 HOH HOH 198 A HOH 59 2 HOH HOH 199 A HOH 60 2 HOH HOH 200 A HOH 61 2 HOH HOH 201 A HOH 62 2 HOH HOH 202 A HOH 63 2 HOH HOH 203 A HOH 64 2 HOH HOH 204 A HOH 65 2 HOH HOH 205 A HOH 66 2 HOH HOH 206 A HOH 67 2 HOH HOH 207 A HOH 68 2 HOH HOH 208 A HOH 69 2 HOH HOH 209 A HOH 70 2 HOH HOH 210 A HOH 71 2 HOH HOH 211 A HOH 72 2 HOH HOH 212 A HOH 73 2 HOH HOH 213 A HOH 74 2 HOH HOH 214 A HOH 75 2 HOH HOH 215 A HOH 76 2 HOH HOH 216 A HOH 77 2 HOH HOH 217 A HOH 78 2 HOH HOH 218 A HOH 79 2 HOH HOH 219 A HOH 80 2 HOH HOH 220 A HOH 81 2 HOH HOH 221 A HOH 82 2 HOH HOH 222 A HOH 83 2 HOH HOH 223 A HOH 84 2 HOH HOH 224 A HOH 85 2 HOH HOH 225 A HOH 86 2 HOH HOH 226 A HOH 87 2 HOH HOH 227 A HOH 88 2 HOH HOH 228 A HOH 89 2 HOH HOH 229 A HOH 90 2 HOH HOH 230 A HOH 91 2 HOH HOH 231 A HOH 92 2 HOH HOH 232 A HOH 93 2 HOH HOH 233 A HOH 94 2 HOH HOH 234 A HOH 95 2 HOH HOH 235 A HOH 96 2 HOH HOH 236 A HOH 97 2 HOH HOH 237 A HOH 98 2 HOH HOH 238 A HOH 99 2 HOH HOH 239 A HOH 100 2 HOH HOH 240 A HOH 101 2 HOH HOH 241 A HOH 102 2 HOH HOH 242 A HOH 103 2 HOH HOH 243 A HOH 104 2 HOH HOH 244 A HOH 105 2 HOH HOH 245 A HOH 106 2 HOH HOH 246 A HOH 107 2 HOH HOH 247 A HOH 108 2 HOH HOH 248 A HOH 109 2 HOH HOH 249 A HOH 110 2 HOH HOH 250 A HOH 111 2 HOH HOH 251 A HOH 112 2 HOH HOH 252 A HOH 113 2 HOH HOH 253 A HOH 114 2 HOH HOH 254 A VAL 37 n 1 VAL 37 A ILE 38 n 2 ILE 38 A HIS 39 n 3 HIS 39 A LEU 40 n 4 LEU 40 A ASP 41 n 5 ASP 41 A SER 42 n 6 SER 42 A LYS 43 n 7 LYS 43 A ASN 44 n 8 ASN 44 A PHE 45 n 9 PHE 45 A ASP 46 n 10 ASP 46 A SER 47 n 11 SER 47 A PHE 48 n 12 PHE 48 A LEU 49 n 13 LEU 49 A ALA 50 n 14 ALA 50 A SER 51 n 15 SER 51 A HIS 52 n 16 HIS 52 A GLU 53 n 17 GLU 53 A ILE 54 n 18 ILE 54 A ALA 55 n 19 ALA 55 A VAL 56 n 20 VAL 56 A VAL 57 n 21 VAL 57 A ASP 58 n 22 ASP 58 A PHE 59 n 23 PHE 59 A TRP 60 n 24 TRP 60 A ALA 61 n 25 ALA 61 A GLU 62 n 26 GLU 62 A TRP 63 n 27 TRP 63 A CYS 64 n 28 CYS 64 A ALA 65 n 29 ALA 65 A PRO 66 n 30 PRO 66 A CYS 67 n 31 CYS 67 A LEU 68 n 32 LEU 68 A ILE 69 n 33 ILE 69 A LEU 70 n 34 LEU 70 A ALA 71 n 35 ALA 71 A PRO 72 n 36 PRO 72 A ILE 73 n 37 ILE 73 A ILE 74 n 38 ILE 74 A GLU 75 n 39 GLU 75 A GLU 76 n 40 GLU 76 A LEU 77 n 41 LEU 77 A ALA 78 n 42 ALA 78 A GLU 79 n 43 GLU 79 A ASP 80 n 44 ASP 80 A TYR 81 n 45 TYR 81 A PRO 82 n 46 PRO 82 A GLN 83 n 47 GLN 83 A VAL 84 n 48 VAL 84 A GLY 85 n 49 GLY 85 A PHE 86 n 50 PHE 86 A GLY 87 n 51 GLY 87 A LYS 88 n 52 LYS 88 A LEU 89 n 53 LEU 89 A ASN 90 n 54 ASN 90 A SER 91 n 55 SER 91 A ASP 92 n 56 ASP 92 A GLU 93 n 57 GLU 93 A ASN 94 n 58 ASN 94 A PRO 95 n 59 PRO 95 A ASP 96 n 60 ASP 96 A ILE 97 n 61 ILE 97 A ALA 98 n 62 ALA 98 A ALA 99 n 63 ALA 99 A ARG 100 n 64 ARG 100 A TYR 101 n 65 TYR 101 A GLY 102 n 66 GLY 102 A VAL 103 n 67 VAL 103 A MET 104 n 68 MET 104 A SER 105 n 69 SER 105 A LEU 106 n 70 LEU 106 A PRO 107 n 71 PRO 107 A THR 108 n 72 THR 108 A VAL 109 n 73 VAL 109 A ILE 110 n 74 ILE 110 A PHE 111 n 75 PHE 111 A PHE 112 n 76 PHE 112 A LYS 113 n 77 LYS 113 A ASP 114 n 78 ASP 114 A GLY 115 n 79 GLY 115 A GLU 116 n 80 GLU 116 A PRO 117 n 81 PRO 117 A VAL 118 n 82 VAL 118 A ASP 119 n 83 ASP 119 A GLU 120 n 84 GLU 120 A ILE 121 n 85 ILE 121 A ILE 122 n 86 ILE 122 A GLY 123 n 87 GLY 123 A ALA 124 n 88 ALA 124 A VAL 125 n 89 VAL 125 A PRO 126 n 90 PRO 126 A ARG 127 n 91 ARG 127 A GLU 128 n 92 GLU 128 A GLU 129 n 93 GLU 129 A ILE 130 n 94 ILE 130 A GLU 131 n 95 GLU 131 A ILE 132 n 96 ILE 132 A ARG 133 n 97 ARG 133 A ILE 134 n 98 ILE 134 A LYS 135 n 99 LYS 135 A ASN 136 n 100 ASN 136 A LEU 137 n 101 LEU 137 A LEU 138 n 102 LEU 138 A GLY 139 n 103 GLY 139 A GLU 140 n 104 GLU 140 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 38 A N ILE 2 A O LYS 88 A O LYS 52 A O GLY 87 A O GLY 51 A N ASP 58 A N ASP 22 A N ALA 55 A N ALA 19 A O PHE 112 A O PHE 76 A N PHE 111 A N PHE 75 A O ASP 119 A O ASP 83 1 A A O O HOH HOH 165 248 2.17 14.866 -0.60 0.00 0.18 -0.21 0.00 0.83 0.966 0.961 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.19185 0.17186 0.17294 1.49 15.00 789 15049 5.0 99.97 1.161 0.045 RANDOM 1 THROUGHOUT MOLECULAR REPLACEMENT 0.075 0.072 0.80 0.80 1.40 MAXIMUM LIKELIHOOD BABINET MODEL WITH MASK 1.49 15.00 114 933 0 0 819 0.015 0.021 840 0.002 0.020 764 1.583 1.962 1145 0.846 3.000 1782 5.653 5.000 103 0.088 0.200 128 0.007 0.020 933 0.002 0.020 160 0.215 0.200 170 0.245 0.200 866 0.086 0.200 479 0.173 0.200 55 0.177 0.200 8 0.225 0.200 37 0.205 0.200 10 0.950 1.500 520 1.740 2.000 844 2.612 3.000 320 3.984 4.500 301 0.284 0.184 1.529 52 1096 20 15.2 1.49 50.0 2E0Q 57836 1 99.9 refinement REFMAC 5.1.24 data collection HKL-2000 data reduction HKL-2000 data scaling HKL-2000 phasing MOLREP Crystal structure of K53E thioredoxin from Sulfolobus tokodaii strain7 1 N N 2 N N A ASN 44 A ASN 8 HELX_P A HIS 52 A HIS 16 1 1 9 A CYS 64 A CYS 28 HELX_P A TYR 81 A TYR 45 1 2 18 A ASN 94 A ASN 58 HELX_P A TYR 101 A TYR 65 1 3 8 A PRO 126 A PRO 90 HELX_P A GLY 139 A GLY 103 1 4 14 disulf 2.175 A CYS 64 A SG CYS 28 1_555 A CYS 67 A SG CYS 31 1_555 ELECTRON TRANSPORT thioredoxin, ELECTRON TRANSPORT A LEU 106 A LEU 70 1 A PRO 107 A PRO 71 -6.77 Q96YQ0_SULTO UNP 1 37 Q96YQ0 VIHLDSKNFDSFLASHKIAVVDFWAEWCAPCLILAPIIEELAEDYPQVGFGKLNSDENPDIAARYGVMSLPTVIFFKDGE PVDEIIGAVPREEIEIRIKNLLGE 37 140 2E0Q 37 140 Q96YQ0 A 1 1 104 1 LYS engineered mutation GLU 53 2E0Q A Q96YQ0 UNP 53 17 5 parallel parallel anti-parallel anti-parallel A ILE 38 A ILE 2 A HIS 39 A HIS 3 A GLY 85 A GLY 49 A ASN 90 A ASN 54 A ILE 54 A ILE 18 A TRP 60 A TRP 24 A THR 108 A THR 72 A LYS 113 A LYS 77 A GLU 116 A GLU 80 A ILE 122 A ILE 86 4 P 1 21 1