0.012279
0.007089
0.000000
0.000000
0.014179
0.000000
0.000000
0.000000
0.008297
0.00000
0.00000
0.00000
Fujiwara, K.
Hosaka, H.
Matsuda, M.
Suzuki, M.
Nakagawa, A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
81.439
81.439
120.532
C2 H4 O2
60.052
ACETIC ACID
non-polymer
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C18 H26 N5 O8 P S2
535.532
5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE
LIPOYL-AMP
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
C
N
2
N
O
N
3
N
O
N
4
N
C
N
5
N
H
N
6
N
H
N
7
N
H
N
8
N
H
N
9
N
N
N
10
S
C
N
11
N
C
N
12
N
O
N
13
N
C
N
14
N
O
N
15
N
H
N
16
N
H
N
17
N
H
N
18
N
H
N
19
N
H
N
20
N
H
N
21
N
H
N
22
N
N
N
23
S
C
N
24
N
C
N
25
N
O
N
26
N
C
N
27
N
C
N
28
N
C
N
29
N
N
N
30
N
C
N
31
N
N
N
32
N
N
N
33
N
O
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
N
N
50
S
C
N
51
N
C
N
52
N
O
N
53
N
C
N
54
N
C
N
55
N
O
N
56
N
N
N
57
N
O
N
58
N
H
N
59
N
H
N
60
N
H
N
61
N
H
N
62
N
H
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
N
N
67
S
C
N
68
N
C
N
69
N
O
N
70
N
C
N
71
N
C
N
72
N
O
N
73
N
O
N
74
N
O
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
H
N
79
N
H
N
80
N
H
N
81
N
H
N
82
N
N
N
83
R
C
N
84
N
C
N
85
N
O
N
86
N
C
N
87
N
S
N
88
N
O
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
S
C
N
98
N
C
N
99
N
O
N
100
N
C
N
101
N
C
N
102
N
C
N
103
N
O
N
104
N
N
N
105
N
O
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
H
N
114
N
H
N
115
N
H
N
116
N
N
N
117
S
C
N
118
N
C
N
119
N
O
N
120
N
C
N
121
N
C
N
122
N
C
N
123
N
O
N
124
N
O
N
125
N
O
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
H
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
N
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
O
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
Y
150
N
C
Y
151
N
N
Y
152
N
C
Y
153
N
C
Y
154
N
N
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
O
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
S
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
O
N
192
R
P
N
193
N
O
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
C
N
200
R
C
N
201
N
S
N
202
N
S
N
203
N
C
N
204
N
C
N
205
N
O
N
206
N
O
N
207
N
C
N
208
R
C
N
209
S
C
N
210
N
O
N
211
R
C
N
212
N
O
N
213
R
C
N
214
N
O
Y
215
N
N
Y
216
N
C
Y
217
N
N
Y
218
N
C
Y
219
N
C
N
220
N
N
Y
221
N
N
Y
222
N
C
Y
223
N
N
Y
224
N
C
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
N
256
N
C
N
257
N
C
N
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
C
N
281
N
N
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
N
N
299
S
C
N
300
N
C
N
301
N
O
N
302
N
C
N
303
N
C
N
304
N
S
N
305
N
C
N
306
N
O
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
MG
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
N
330
N
O
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
P
N
343
N
O
N
344
N
O
N
345
N
O
N
346
N
O
N
347
N
N
N
348
S
C
N
349
N
C
N
350
N
O
N
351
N
C
N
352
N
C
N
353
N
C
N
354
N
O
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
N
N
365
S
C
N
366
N
C
N
367
N
O
N
368
N
C
N
369
N
O
N
370
N
O
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
R
C
N
383
N
O
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
N
N
396
S
C
N
397
N
C
N
398
N
O
N
399
N
C
Y
400
N
C
Y
401
N
C
Y
402
N
C
Y
403
N
N
Y
404
N
C
Y
405
N
C
Y
406
N
C
Y
407
N
C
Y
408
N
C
N
409
N
O
N
410
N
H
N
411
N
H
N
412
N
H
N
413
N
H
N
414
N
H
N
415
N
H
N
416
N
H
N
417
N
H
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
N
N
423
S
C
N
424
N
C
N
425
N
O
N
426
N
C
Y
427
N
C
Y
428
N
C
Y
429
N
C
Y
430
N
C
Y
431
N
C
Y
432
N
C
N
433
N
O
N
434
N
O
N
435
N
H
N
436
N
H
N
437
N
H
N
438
N
H
N
439
N
H
N
440
N
H
N
441
N
H
N
442
N
H
N
443
N
H
N
444
N
H
N
445
N
H
N
446
N
N
N
447
S
C
N
448
N
C
N
449
N
O
N
450
N
C
N
451
N
C
N
452
N
C
N
453
N
O
N
454
N
H
N
455
N
H
N
456
N
H
N
457
N
H
N
458
N
H
N
459
N
H
N
460
N
H
N
461
N
H
N
462
N
H
N
463
N
H
N
464
N
H
N
1
N
doub
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
sing
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
doub
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
doub
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
doub
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
sing
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
sing
N
51
N
sing
N
52
N
doub
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
doub
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
doub
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
doub
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
doub
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
doub
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
doub
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
Y
147
N
sing
Y
148
N
doub
Y
149
N
doub
N
150
N
sing
Y
151
N
sing
N
152
N
sing
Y
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
doub
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
doub
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
Y
228
N
sing
Y
229
N
sing
Y
230
N
doub
N
231
N
sing
Y
232
N
sing
Y
233
N
doub
Y
234
N
sing
Y
235
N
doub
N
236
N
sing
N
237
N
sing
N
238
N
sing
Y
239
N
sing
Y
240
N
doub
N
241
N
sing
Y
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
doub
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
doub
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
Y
318
N
doub
Y
319
N
sing
Y
320
N
sing
N
321
N
sing
Y
322
N
doub
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
doub
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
doub
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
doub
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
Y
391
N
doub
Y
392
N
sing
Y
393
N
sing
N
394
N
sing
Y
395
N
doub
Y
396
N
sing
Y
397
N
sing
N
398
N
sing
Y
399
N
sing
Y
400
N
doub
N
401
N
sing
Y
402
N
doub
N
403
N
sing
Y
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
doub
N
415
N
sing
N
416
N
sing
N
417
N
sing
N
418
N
sing
Y
419
N
doub
Y
420
N
sing
Y
421
N
sing
N
422
N
sing
Y
423
N
doub
N
424
N
sing
Y
425
N
doub
N
426
N
sing
Y
427
N
sing
N
428
N
sing
N
429
N
sing
N
430
N
sing
N
431
N
sing
N
432
N
sing
N
433
N
sing
N
434
N
sing
N
435
N
sing
N
436
N
sing
N
437
N
sing
N
438
N
doub
N
439
N
sing
N
440
N
sing
N
441
N
sing
N
442
N
sing
N
443
N
sing
N
444
N
sing
N
445
N
sing
N
446
N
sing
N
447
N
sing
N
448
N
sing
N
449
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
371
222
234
10.1016/j.jmb.2007.05.059
17570395
Crystal structure of bovine Lipoyltransferase in complex with lipoyl-AMP
2007
10.2210/pdb2e5a/pdb
pdb_00002e5a
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
x-ray
1
0.9
1.0
BL44XU
SPring-8
0.9
SYNCHROTRON
SPRING-8 BEAMLINE BL44XU
39214.797
Lipoyltransferase 1
6.-.-.-
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
94.971
PHOSPHATE ION
2
syn
non-polymer
535.532
5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE
1
syn
non-polymer
60.052
ACETIC ACID
1
syn
non-polymer
18.015
water
226
nat
water
Lipoate- protein ligase, Lipoate biosynthesis protein, Lipoyl ligase
no
no
TVKSGLILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTV
YHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDG
TFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIHLINPTDETVFPGINSKAIEL
QTWEWIYGKTPKFSVDTSFTVLHEQSHVEIKVFIDVKNGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSPIETTVLTS
ILHRTYPGDDELHSKWNILCEKIKGIM
TVKSGLILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTV
YHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDG
TFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIHLINPTDETVFPGINSKAIEL
QTWEWIYGKTPKFSVDTSFTVLHEQSHVEIKVFIDVKNGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSPIETTVLTS
ILHRTYPGDDELHSKWNILCEKIKGIM
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
cattle
Bos
Escherichia
sample
LIPT1
9913
Bos taurus
562
Escherichia coli
BL21(DE3)pLysS
plasmid
pET-3b
2.94
58.18
chem_comp_atom
chem_comp_bond
database_2
pdbx_struct_conn_angle
struct_conn
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2007-09-04
1
1
2011-07-13
1
2
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
PDBJ
Y
PDBJ
2006-12-19
REL
REL
MG
MAGNESIUM ION
PO4
PHOSPHATE ION
LAQ
5'-O-[(R)-({5-[(3R)-1,2-DITHIOLAN-3-YL]PENTANOYL}OXY)(HYDROXY)PHOSPHORYL]ADENOSINE
ACY
ACETIC ACID
HOH
water
MG
3001
2
MG
MG
3001
A
PO4
4001
3
PO4
PO4
4001
A
PO4
4002
3
PO4
PO4
4002
A
LAQ
2001
4
LAQ
LAQ
2001
A
ACY
5001
5
ACY
ACY
5001
A
HOH
1
6
HOH
HOH
5002
A
HOH
2
6
HOH
HOH
5003
A
HOH
3
6
HOH
HOH
5004
A
HOH
4
6
HOH
HOH
5005
A
HOH
5
6
HOH
HOH
5006
A
HOH
6
6
HOH
HOH
5007
A
HOH
7
6
HOH
HOH
5008
A
HOH
8
6
HOH
HOH
5009
A
HOH
9
6
HOH
HOH
5010
A
HOH
10
6
HOH
HOH
5011
A
HOH
11
6
HOH
HOH
5012
A
HOH
12
6
HOH
HOH
5013
A
HOH
13
6
HOH
HOH
5014
A
HOH
14
6
HOH
HOH
5015
A
HOH
15
6
HOH
HOH
5016
A
HOH
16
6
HOH
HOH
5017
A
HOH
17
6
HOH
HOH
5018
A
HOH
18
6
HOH
HOH
5019
A
HOH
19
6
HOH
HOH
5020
A
HOH
20
6
HOH
HOH
5021
A
HOH
21
6
HOH
HOH
5022
A
HOH
22
6
HOH
HOH
5023
A
HOH
23
6
HOH
HOH
5024
A
HOH
24
6
HOH
HOH
5025
A
HOH
25
6
HOH
HOH
5026
A
HOH
26
6
HOH
HOH
5027
A
HOH
27
6
HOH
HOH
5028
A
HOH
28
6
HOH
HOH
5029
A
HOH
29
6
HOH
HOH
5030
A
HOH
30
6
HOH
HOH
5031
A
HOH
31
6
HOH
HOH
5032
A
HOH
32
6
HOH
HOH
5033
A
HOH
33
6
HOH
HOH
5034
A
HOH
34
6
HOH
HOH
5035
A
HOH
35
6
HOH
HOH
5036
A
HOH
36
6
HOH
HOH
5037
A
HOH
37
6
HOH
HOH
5038
A
HOH
38
6
HOH
HOH
5039
A
HOH
39
6
HOH
HOH
5040
A
HOH
40
6
HOH
HOH
5041
A
HOH
41
6
HOH
HOH
5042
A
HOH
42
6
HOH
HOH
5043
A
HOH
43
6
HOH
HOH
5044
A
HOH
44
6
HOH
HOH
5045
A
HOH
45
6
HOH
HOH
5046
A
HOH
46
6
HOH
HOH
5047
A
HOH
47
6
HOH
HOH
5048
A
HOH
48
6
HOH
HOH
5049
A
HOH
49
6
HOH
HOH
5050
A
HOH
50
6
HOH
HOH
5051
A
HOH
51
6
HOH
HOH
5052
A
HOH
52
6
HOH
HOH
5053
A
HOH
53
6
HOH
HOH
5054
A
HOH
54
6
HOH
HOH
5055
A
HOH
55
6
HOH
HOH
5056
A
HOH
56
6
HOH
HOH
5057
A
HOH
57
6
HOH
HOH
5058
A
HOH
58
6
HOH
HOH
5059
A
HOH
59
6
HOH
HOH
5060
A
HOH
60
6
HOH
HOH
5061
A
HOH
61
6
HOH
HOH
5062
A
HOH
62
6
HOH
HOH
5063
A
HOH
63
6
HOH
HOH
5064
A
HOH
64
6
HOH
HOH
5065
A
HOH
65
6
HOH
HOH
5066
A
HOH
66
6
HOH
HOH
5067
A
HOH
67
6
HOH
HOH
5068
A
HOH
68
6
HOH
HOH
5069
A
HOH
69
6
HOH
HOH
5070
A
HOH
70
6
HOH
HOH
5071
A
HOH
71
6
HOH
HOH
5072
A
HOH
72
6
HOH
HOH
5073
A
HOH
73
6
HOH
HOH
5074
A
HOH
74
6
HOH
HOH
5075
A
HOH
75
6
HOH
HOH
5076
A
HOH
76
6
HOH
HOH
5077
A
HOH
77
6
HOH
HOH
5078
A
HOH
78
6
HOH
HOH
5079
A
HOH
79
6
HOH
HOH
5080
A
HOH
80
6
HOH
HOH
5081
A
HOH
81
6
HOH
HOH
5082
A
HOH
82
6
HOH
HOH
5083
A
HOH
83
6
HOH
HOH
5084
A
HOH
84
6
HOH
HOH
5085
A
HOH
85
6
HOH
HOH
5086
A
HOH
86
6
HOH
HOH
5087
A
HOH
87
6
HOH
HOH
5088
A
HOH
88
6
HOH
HOH
5089
A
HOH
89
6
HOH
HOH
5090
A
HOH
90
6
HOH
HOH
5091
A
HOH
91
6
HOH
HOH
5092
A
HOH
92
6
HOH
HOH
5093
A
HOH
93
6
HOH
HOH
5094
A
HOH
94
6
HOH
HOH
5095
A
HOH
95
6
HOH
HOH
5096
A
HOH
96
6
HOH
HOH
5097
A
HOH
97
6
HOH
HOH
5098
A
HOH
98
6
HOH
HOH
5099
A
HOH
99
6
HOH
HOH
5100
A
HOH
100
6
HOH
HOH
5101
A
HOH
101
6
HOH
HOH
5102
A
HOH
102
6
HOH
HOH
5103
A
HOH
103
6
HOH
HOH
5104
A
HOH
104
6
HOH
HOH
5105
A
HOH
105
6
HOH
HOH
5106
A
HOH
106
6
HOH
HOH
5107
A
HOH
107
6
HOH
HOH
5108
A
HOH
108
6
HOH
HOH
5109
A
HOH
109
6
HOH
HOH
5110
A
HOH
110
6
HOH
HOH
5111
A
HOH
111
6
HOH
HOH
5112
A
HOH
112
6
HOH
HOH
5113
A
HOH
113
6
HOH
HOH
5114
A
HOH
114
6
HOH
HOH
5115
A
HOH
115
6
HOH
HOH
5116
A
HOH
116
6
HOH
HOH
5117
A
HOH
117
6
HOH
HOH
5118
A
HOH
118
6
HOH
HOH
5119
A
HOH
119
6
HOH
HOH
5120
A
HOH
120
6
HOH
HOH
5121
A
HOH
121
6
HOH
HOH
5122
A
HOH
122
6
HOH
HOH
5123
A
HOH
123
6
HOH
HOH
5124
A
HOH
124
6
HOH
HOH
5125
A
HOH
125
6
HOH
HOH
5126
A
HOH
126
6
HOH
HOH
5127
A
HOH
127
6
HOH
HOH
5128
A
HOH
128
6
HOH
HOH
5129
A
HOH
129
6
HOH
HOH
5130
A
HOH
130
6
HOH
HOH
5131
A
HOH
131
6
HOH
HOH
5132
A
HOH
132
6
HOH
HOH
5133
A
HOH
133
6
HOH
HOH
5134
A
HOH
134
6
HOH
HOH
5135
A
HOH
135
6
HOH
HOH
5136
A
HOH
137
6
HOH
HOH
5137
A
HOH
138
6
HOH
HOH
5138
A
HOH
139
6
HOH
HOH
5139
A
HOH
140
6
HOH
HOH
5140
A
HOH
141
6
HOH
HOH
5141
A
HOH
142
6
HOH
HOH
5142
A
HOH
143
6
HOH
HOH
5143
A
HOH
144
6
HOH
HOH
5144
A
HOH
145
6
HOH
HOH
5145
A
HOH
146
6
HOH
HOH
5146
A
HOH
147
6
HOH
HOH
5147
A
HOH
148
6
HOH
HOH
5148
A
HOH
149
6
HOH
HOH
5149
A
HOH
150
6
HOH
HOH
5150
A
HOH
151
6
HOH
HOH
5151
A
HOH
152
6
HOH
HOH
5152
A
HOH
153
6
HOH
HOH
5153
A
HOH
154
6
HOH
HOH
5154
A
HOH
155
6
HOH
HOH
5155
A
HOH
156
6
HOH
HOH
5156
A
HOH
157
6
HOH
HOH
5157
A
HOH
158
6
HOH
HOH
5158
A
HOH
159
6
HOH
HOH
5159
A
HOH
160
6
HOH
HOH
5160
A
HOH
161
6
HOH
HOH
5161
A
HOH
162
6
HOH
HOH
5162
A
HOH
163
6
HOH
HOH
5163
A
HOH
164
6
HOH
HOH
5164
A
HOH
165
6
HOH
HOH
5165
A
HOH
166
6
HOH
HOH
5166
A
HOH
167
6
HOH
HOH
5167
A
HOH
168
6
HOH
HOH
5168
A
HOH
169
6
HOH
HOH
5169
A
HOH
170
6
HOH
HOH
5170
A
HOH
171
6
HOH
HOH
5171
A
HOH
172
6
HOH
HOH
5172
A
HOH
173
6
HOH
HOH
5173
A
HOH
174
6
HOH
HOH
5174
A
HOH
175
6
HOH
HOH
5175
A
HOH
176
6
HOH
HOH
5176
A
HOH
177
6
HOH
HOH
5177
A
HOH
178
6
HOH
HOH
5178
A
HOH
179
6
HOH
HOH
5179
A
HOH
180
6
HOH
HOH
5180
A
HOH
181
6
HOH
HOH
5181
A
HOH
182
6
HOH
HOH
5182
A
HOH
183
6
HOH
HOH
5183
A
HOH
184
6
HOH
HOH
5184
A
HOH
185
6
HOH
HOH
5185
A
HOH
186
6
HOH
HOH
5186
A
HOH
187
6
HOH
HOH
5187
A
HOH
188
6
HOH
HOH
5188
A
HOH
189
6
HOH
HOH
5189
A
HOH
190
6
HOH
HOH
5190
A
HOH
191
6
HOH
HOH
5191
A
HOH
192
6
HOH
HOH
5192
A
HOH
193
6
HOH
HOH
5193
A
HOH
194
6
HOH
HOH
5194
A
HOH
195
6
HOH
HOH
5195
A
HOH
196
6
HOH
HOH
5196
A
HOH
197
6
HOH
HOH
5197
A
HOH
198
6
HOH
HOH
5198
A
HOH
199
6
HOH
HOH
5199
A
HOH
200
6
HOH
HOH
5200
A
HOH
201
6
HOH
HOH
5201
A
HOH
202
6
HOH
HOH
5202
A
HOH
203
6
HOH
HOH
5203
A
HOH
204
6
HOH
HOH
5204
A
HOH
205
6
HOH
HOH
5205
A
HOH
206
6
HOH
HOH
5206
A
HOH
207
6
HOH
HOH
5207
A
HOH
208
6
HOH
HOH
5208
A
HOH
209
6
HOH
HOH
5209
A
HOH
210
6
HOH
HOH
5210
A
HOH
211
6
HOH
HOH
5211
A
HOH
212
6
HOH
HOH
5212
A
HOH
213
6
HOH
HOH
5213
A
HOH
214
6
HOH
HOH
5214
A
HOH
215
6
HOH
HOH
5215
A
HOH
216
6
HOH
HOH
5216
A
HOH
217
6
HOH
HOH
5217
A
HOH
218
6
HOH
HOH
5218
A
HOH
219
6
HOH
HOH
5219
A
HOH
220
6
HOH
HOH
5220
A
HOH
221
6
HOH
HOH
5221
A
HOH
222
6
HOH
HOH
5222
A
HOH
223
6
HOH
HOH
5223
A
HOH
224
6
HOH
HOH
5224
A
HOH
225
6
HOH
HOH
5225
A
HOH
226
6
HOH
HOH
5226
A
HOH
227
6
HOH
HOH
5227
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
GLY
5
n
5
GLY
5
A
LEU
6
n
6
LEU
6
A
ILE
7
n
7
ILE
7
A
LEU
8
n
8
LEU
8
A
GLN
9
n
9
GLN
9
A
SER
10
n
10
SER
10
A
ILE
11
n
11
ILE
11
A
SER
12
n
12
SER
12
A
ASN
13
n
13
ASN
13
A
ASP
14
n
14
ASP
14
A
VAL
15
n
15
VAL
15
A
TYR
16
n
16
TYR
16
A
HIS
17
n
17
HIS
17
A
ASN
18
n
18
ASN
18
A
LEU
19
n
19
LEU
19
A
ALA
20
n
20
ALA
20
A
VAL
21
n
21
VAL
21
A
GLU
22
n
22
GLU
22
A
ASP
23
n
23
ASP
23
A
TRP
24
n
24
TRP
24
A
ILE
25
n
25
ILE
25
A
HIS
26
n
26
HIS
26
A
ASP
27
n
27
ASP
27
A
HIS
28
n
28
HIS
28
A
MET
29
n
29
MET
29
A
ASN
30
n
30
ASN
30
A
LEU
31
n
31
LEU
31
A
GLU
32
n
32
GLU
32
A
GLY
33
n
33
GLY
33
A
LYS
34
n
34
LYS
34
A
PRO
35
n
35
PRO
35
A
VAL
36
n
36
VAL
36
A
LEU
37
n
37
LEU
37
A
PHE
38
n
38
PHE
38
A
LEU
39
n
39
LEU
39
A
TRP
40
n
40
TRP
40
A
ARG
41
n
41
ARG
41
A
ASN
42
n
42
ASN
42
A
SER
43
n
43
SER
43
A
PRO
44
n
44
PRO
44
A
THR
45
n
45
THR
45
A
VAL
46
n
46
VAL
46
A
VAL
47
n
47
VAL
47
A
ILE
48
n
48
ILE
48
A
GLY
49
n
49
GLY
49
A
ARG
50
n
50
ARG
50
A
HIS
51
n
51
HIS
51
A
GLN
52
n
52
GLN
52
A
ASN
53
n
53
ASN
53
A
PRO
54
n
54
PRO
54
A
TRP
55
n
55
TRP
55
A
GLN
56
n
56
GLN
56
A
GLU
57
n
57
GLU
57
A
CYS
58
n
58
CYS
58
A
ASN
59
n
59
ASN
59
A
LEU
60
n
60
LEU
60
A
ASN
61
n
61
ASN
61
A
LEU
62
n
62
LEU
62
A
MET
63
n
63
MET
63
A
ARG
64
n
64
ARG
64
A
GLU
65
n
65
GLU
65
A
GLU
66
n
66
GLU
66
A
GLY
67
n
67
GLY
67
A
VAL
68
n
68
VAL
68
A
LYS
69
n
69
LYS
69
A
LEU
70
n
70
LEU
70
A
ALA
71
n
71
ALA
71
A
ARG
72
n
72
ARG
72
A
ARG
73
n
73
ARG
73
A
ARG
74
n
74
ARG
74
A
SER
75
n
75
SER
75
A
GLY
76
n
76
GLY
76
A
GLY
77
n
77
GLY
77
A
GLY
78
n
78
GLY
78
A
THR
79
n
79
THR
79
A
VAL
80
n
80
VAL
80
A
TYR
81
n
81
TYR
81
A
HIS
82
n
82
HIS
82
A
ASP
83
n
83
ASP
83
A
MET
84
n
84
MET
84
A
GLY
85
n
85
GLY
85
A
ASN
86
n
86
ASN
86
A
ILE
87
n
87
ILE
87
A
ASN
88
n
88
ASN
88
A
LEU
89
n
89
LEU
89
A
THR
90
n
90
THR
90
A
PHE
91
n
91
PHE
91
A
PHE
92
n
92
PHE
92
A
THR
93
n
93
THR
93
A
THR
94
n
94
THR
94
A
LYS
95
n
95
LYS
95
A
LYS
96
n
96
LYS
96
A
LYS
97
n
97
LYS
97
A
TYR
98
n
98
TYR
98
A
ASP
99
n
99
ASP
99
A
ARG
100
n
100
ARG
100
A
MET
101
n
101
MET
101
A
GLU
102
n
102
GLU
102
A
ASN
103
n
103
ASN
103
A
LEU
104
n
104
LEU
104
A
LYS
105
n
105
LYS
105
A
LEU
106
n
106
LEU
106
A
VAL
107
n
107
VAL
107
A
VAL
108
n
108
VAL
108
A
ARG
109
n
109
ARG
109
A
ALA
110
n
110
ALA
110
A
LEU
111
n
111
LEU
111
A
LYS
112
n
112
LYS
112
A
ALA
113
n
113
ALA
113
A
VAL
114
n
114
VAL
114
A
HIS
115
n
115
HIS
115
A
PRO
116
n
116
PRO
116
A
HIS
117
n
117
HIS
117
A
LEU
118
n
118
LEU
118
A
ASP
119
n
119
ASP
119
A
VAL
120
n
120
VAL
120
A
GLN
121
n
121
GLN
121
A
ALA
122
n
122
ALA
122
A
THR
123
n
123
THR
123
A
LYS
124
n
124
LYS
124
A
ARG
125
n
125
ARG
125
A
PHE
126
n
126
PHE
126
A
ASP
127
n
127
ASP
127
A
LEU
128
n
128
LEU
128
A
LEU
129
n
129
LEU
129
A
LEU
130
n
130
LEU
130
A
ASP
131
n
131
ASP
131
A
GLY
132
n
132
GLY
132
A
GLN
133
n
133
GLN
133
A
PHE
134
n
134
PHE
134
A
LYS
135
n
135
LYS
135
A
ILE
136
n
136
ILE
136
A
SER
137
n
137
SER
137
A
GLY
138
n
138
GLY
138
A
THR
139
n
139
THR
139
A
ALA
140
n
140
ALA
140
A
SER
141
n
141
SER
141
A
LYS
142
n
142
LYS
142
A
ILE
143
n
143
ILE
143
A
GLY
144
n
144
GLY
144
A
ARG
145
n
145
ARG
145
A
ASN
146
n
146
ASN
146
A
ALA
147
n
147
ALA
147
A
ALA
148
n
148
ALA
148
A
TYR
149
n
149
TYR
149
A
HIS
150
n
150
HIS
150
A
HIS
151
n
151
HIS
151
A
CYS
152
n
152
CYS
152
A
THR
153
n
153
THR
153
A
LEU
154
n
154
LEU
154
A
LEU
155
n
155
LEU
155
A
CYS
156
n
156
CYS
156
A
GLY
157
n
157
GLY
157
A
THR
158
n
158
THR
158
A
ASP
159
n
159
ASP
159
A
GLY
160
n
160
GLY
160
A
THR
161
n
161
THR
161
A
PHE
162
n
162
PHE
162
A
LEU
163
n
163
LEU
163
A
SER
164
n
164
SER
164
A
SER
165
n
165
SER
165
A
LEU
166
n
166
LEU
166
A
LEU
167
n
167
LEU
167
A
LYS
168
n
168
LYS
168
A
SER
169
n
169
SER
169
A
PRO
170
n
170
PRO
170
A
TYR
171
n
171
TYR
171
A
GLN
172
n
172
GLN
172
A
GLY
173
n
173
GLY
173
A
ILE
174
n
174
ILE
174
A
ARG
175
n
175
ARG
175
A
SER
176
n
176
SER
176
A
ASN
177
n
177
ASN
177
A
ALA
178
n
178
ALA
178
A
THR
179
n
179
THR
179
A
ALA
180
n
180
ALA
180
A
SER
181
n
181
SER
181
A
THR
182
n
182
THR
182
A
PRO
183
n
183
PRO
183
A
ALA
184
n
184
ALA
184
A
LEU
185
n
185
LEU
185
A
VAL
186
n
186
VAL
186
A
LYS
187
n
187
LYS
187
A
ASN
188
n
188
ASN
188
A
LEU
189
n
189
LEU
189
A
MET
190
n
190
MET
190
A
GLU
191
n
191
GLU
191
A
LYS
192
n
192
LYS
192
A
ASP
193
n
193
ASP
193
A
PRO
194
n
194
PRO
194
A
THR
195
n
195
THR
195
A
LEU
196
n
196
LEU
196
A
THR
197
n
197
THR
197
A
CYS
198
n
198
CYS
198
A
GLU
199
n
199
GLU
199
A
VAL
200
n
200
VAL
200
A
VAL
201
n
201
VAL
201
A
ILE
202
n
202
ILE
202
A
ASN
203
n
203
ASN
203
A
ALA
204
n
204
ALA
204
A
VAL
205
n
205
VAL
205
A
ALA
206
n
206
ALA
206
A
THR
207
n
207
THR
207
A
GLU
208
n
208
GLU
208
A
TYR
209
n
209
TYR
209
A
ALA
210
n
210
ALA
210
A
THR
211
n
211
THR
211
A
SER
212
n
212
SER
212
A
HIS
213
n
213
HIS
213
A
GLN
214
n
214
GLN
214
A
ILE
215
n
215
ILE
215
A
ASP
216
n
216
ASP
216
A
ASN
217
n
217
ASN
217
A
HIS
218
n
218
HIS
218
A
ILE
219
n
219
ILE
219
A
HIS
220
n
220
HIS
220
A
LEU
221
n
221
LEU
221
A
ILE
222
n
222
ILE
222
A
ASN
223
n
223
ASN
223
A
PRO
224
n
224
PRO
224
A
THR
225
n
225
THR
225
A
ASP
226
n
226
ASP
226
A
GLU
227
n
227
GLU
227
A
THR
228
n
228
THR
228
A
VAL
229
n
229
VAL
229
A
PHE
230
n
230
PHE
230
A
PRO
231
n
231
PRO
231
A
GLY
232
n
232
GLY
232
A
ILE
233
n
233
ILE
233
A
ASN
234
n
234
ASN
234
A
SER
235
n
235
SER
235
A
LYS
236
n
236
LYS
236
A
ALA
237
n
237
ALA
237
A
ILE
238
n
238
ILE
238
A
GLU
239
n
239
GLU
239
A
LEU
240
n
240
LEU
240
A
GLN
241
n
241
GLN
241
A
THR
242
n
242
THR
242
A
TRP
243
n
243
TRP
243
A
GLU
244
n
244
GLU
244
A
TRP
245
n
245
TRP
245
A
ILE
246
n
246
ILE
246
A
TYR
247
n
247
TYR
247
A
GLY
248
n
248
GLY
248
A
LYS
249
n
249
LYS
249
A
THR
250
n
250
THR
250
A
PRO
251
n
251
PRO
251
A
LYS
252
n
252
LYS
252
A
PHE
253
n
253
PHE
253
A
SER
254
n
254
SER
254
A
VAL
255
n
255
VAL
255
A
ASP
256
n
256
ASP
256
A
THR
257
n
257
THR
257
A
SER
258
n
258
SER
258
A
PHE
259
n
259
PHE
259
A
THR
260
n
260
THR
260
A
VAL
261
n
261
VAL
261
A
LEU
262
n
262
LEU
262
A
HIS
263
n
263
HIS
263
A
n
264
264
A
n
265
265
A
SER
266
n
266
SER
266
A
HIS
267
n
267
HIS
267
A
VAL
268
n
268
VAL
268
A
GLU
269
n
269
GLU
269
A
ILE
270
n
270
ILE
270
A
LYS
271
n
271
LYS
271
A
VAL
272
n
272
VAL
272
A
PHE
273
n
273
PHE
273
A
ILE
274
n
274
ILE
274
A
ASP
275
n
275
ASP
275
A
VAL
276
n
276
VAL
276
A
LYS
277
n
277
LYS
277
A
ASN
278
n
278
ASN
278
A
GLY
279
n
279
GLY
279
A
ARG
280
n
280
ARG
280
A
ILE
281
n
281
ILE
281
A
GLU
282
n
282
GLU
282
A
VAL
283
n
283
VAL
283
A
CYS
284
n
284
CYS
284
A
ASN
285
n
285
ASN
285
A
ILE
286
n
286
ILE
286
A
GLU
287
n
287
GLU
287
A
ALA
288
n
288
ALA
288
A
PRO
289
n
289
PRO
289
A
ASP
290
n
290
ASP
290
A
HIS
291
n
291
HIS
291
A
TRP
292
n
292
TRP
292
A
LEU
293
n
293
LEU
293
A
PRO
294
n
294
PRO
294
A
LEU
295
n
295
LEU
295
A
GLU
296
n
296
GLU
296
A
ILE
297
n
297
ILE
297
A
CYS
298
n
298
CYS
298
A
ASP
299
n
299
ASP
299
A
GLN
300
n
300
GLN
300
A
LEU
301
n
301
LEU
301
A
ASN
302
n
302
ASN
302
A
SER
303
n
303
SER
303
A
SER
304
n
304
SER
304
A
LEU
305
n
305
LEU
305
A
ILE
306
n
306
ILE
306
A
GLY
307
n
307
GLY
307
A
SER
308
n
308
SER
308
A
LYS
309
n
309
LYS
309
A
PHE
310
n
310
PHE
310
A
SER
311
n
311
SER
311
A
PRO
312
n
312
PRO
312
A
ILE
313
n
313
ILE
313
A
GLU
314
n
314
GLU
314
A
THR
315
n
315
THR
315
A
THR
316
n
316
THR
316
A
VAL
317
n
317
VAL
317
A
n
318
318
A
n
319
319
A
n
320
320
A
n
321
321
A
n
322
322
A
n
323
323
A
n
324
324
A
n
325
325
A
n
326
326
A
n
327
327
A
n
328
328
A
n
329
329
A
ASP
330
n
330
ASP
330
A
GLU
331
n
331
GLU
331
A
LEU
332
n
332
LEU
332
A
HIS
333
n
333
HIS
333
A
SER
334
n
334
SER
334
A
LYS
335
n
335
LYS
335
A
TRP
336
n
336
TRP
336
A
ASN
337
n
337
ASN
337
A
ILE
338
n
338
ILE
338
A
LEU
339
n
339
LEU
339
A
CYS
340
n
340
CYS
340
A
GLU
341
n
341
GLU
341
A
LYS
342
n
342
LYS
342
A
ILE
343
n
343
ILE
343
A
LYS
344
n
344
LYS
344
A
GLY
345
n
345
GLY
345
A
ILE
346
n
346
ILE
346
A
MET
347
n
347
MET
347
A
author_defined_assembly
1
monomeric
A
ARG
125
A
O
ARG
125
1_555
A
MG
3001
B
MG
MG
1_555
A
ASP
127
A
OD1
ASP
127
1_555
103.7
A
ARG
125
A
O
ARG
125
1_555
A
MG
3001
B
MG
MG
1_555
A
THR
139
A
N
THR
139
1_555
132.8
A
ASP
127
A
OD1
ASP
127
1_555
A
MG
3001
B
MG
MG
1_555
A
THR
139
A
N
THR
139
1_555
111.7
A
ARG
125
A
O
ARG
125
1_555
A
MG
3001
B
MG
MG
1_555
A
HOH
5068
G
O
HOH
1_555
97.2
A
ASP
127
A
OD1
ASP
127
1_555
A
MG
3001
B
MG
MG
1_555
A
HOH
5068
G
O
HOH
1_555
106.6
A
THR
139
A
N
THR
139
1_555
A
MG
3001
B
MG
MG
1_555
A
HOH
5068
G
O
HOH
1_555
101.2
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
142
A
N
LYS
142
A
O
TYR
149
A
O
TYR
149
A
O
HIS
150
A
O
HIS
150
A
N
PHE
91
A
N
PHE
91
A
O
PHE
92
A
O
PHE
92
A
N
VAL
36
A
N
VAL
36
A
O
LEU
37
A
O
LEU
37
A
N
LEU
8
A
N
LEU
8
A
N
ILE
7
A
N
ILE
7
A
O
HIS
220
A
O
HIS
220
A
O
LYS
69
A
O
LYS
69
A
N
VAL
46
A
N
VAL
46
A
N
THR
45
A
N
THR
45
A
O
HIS
82
A
O
HIS
82
A
N
GLN
121
A
N
GLN
121
A
O
LEU
129
A
O
LEU
129
A
N
LEU
130
A
N
LEU
130
A
O
PHE
134
A
O
PHE
134
A
N
ARG
175
A
N
ARG
175
A
O
SER
254
A
O
SER
254
A
N
PHE
253
A
N
PHE
253
A
O
VAL
276
A
O
VAL
276
A
N
LYS
271
A
N
LYS
271
A
O
GLU
287
A
O
GLU
287
1
A
THR
1
A
THR
1
1
Y
1
A
VAL
2
A
VAL
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
SER
4
A
SER
4
1
Y
1
A
GLU
264
A
GLU
264
1
Y
1
A
GLN
265
A
GLN
265
1
Y
1
A
LEU
318
A
LEU
318
1
Y
1
A
THR
319
A
THR
319
1
Y
1
A
SER
320
A
SER
320
1
Y
1
A
ILE
321
A
ILE
321
1
Y
1
A
LEU
322
A
LEU
322
1
Y
1
A
HIS
323
A
HIS
323
1
Y
1
A
ARG
324
A
ARG
324
1
Y
1
A
THR
325
A
THR
325
1
Y
1
A
TYR
326
A
TYR
326
1
Y
1
A
PRO
327
A
PRO
327
1
Y
1
A
GLY
328
A
GLY
328
1
Y
1
A
ASP
329
A
ASP
329
1
Y
1
A
ASP
99
-156.87
89.57
1
A
GLN
133
-135.09
-36.35
1
A
ASP
159
-60.61
92.54
1
A
PRO
194
-55.43
-9.77
1
A
PRO
224
-69.93
0.42
1
A
THR
315
-148.29
-15.38
45.548
0.48
0.24
0.00
0.48
0.00
-0.72
0.947
0.923
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2627
0.21863
0.22092
2.10
50.0
1386
26173
5.0
99.65
4.811
0.132
RANDOM
1
THROUGHOUT
SAD
0.208
0.187
0.80
0.80
1.40
MAXIMUM LIKELIHOOD
MASK
2.10
50.0
230
2889
45
0
2614
0.007
0.021
2720
1.126
1.962
3694
5.447
5.000
326
35.915
24.538
119
13.400
15.000
470
15.926
15.000
12
0.071
0.200
421
0.003
0.020
2002
0.181
0.200
1197
0.297
0.200
1819
0.233
0.200
194
0.149
0.200
39
0.151
0.200
21
0.604
1.500
1693
1.064
2.000
2665
1.179
3.000
1174
1.871
4.500
1029
0.292
0.251
2.153
109
1904
20
98.92
2.1
50.00
2E5A
27589
0.051
1
58.2
8.6
99.6
0.470
2.10
2.18
5.2
8.8
99.3
refinement
REFMAC
5.2.0019
data collection
HKL-2000
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SOLVE
Crystal Structure of Bovine Lipoyltransferase in Complex with Lipoyl-AMP
1
N
N
2
N
N
3
N
N
3
N
N
4
N
N
5
N
N
6
N
N
A
ASP
14
A
ASP
14
HELX_P
A
MET
29
A
MET
29
1
1
16
A
ASN
53
A
ASN
53
HELX_P
A
CYS
58
A
CYS
58
1
2
6
A
ASN
59
A
ASN
59
HELX_P
A
GLU
65
A
GLU
65
1
3
7
A
THR
94
A
THR
94
HELX_P
A
TYR
98
A
TYR
98
5
4
5
A
ASP
99
A
ASP
99
HELX_P
A
HIS
115
A
HIS
115
1
5
17
A
ASP
159
A
ASP
159
HELX_P
A
LEU
167
A
LEU
167
1
6
9
A
ASN
188
A
ASN
188
HELX_P
A
ASP
193
A
ASP
193
1
7
6
A
THR
197
A
THR
197
HELX_P
A
GLN
214
A
GLN
214
1
8
18
A
GLY
232
A
GLY
232
HELX_P
A
THR
242
A
THR
242
1
9
11
A
THR
242
A
THR
242
HELX_P
A
TYR
247
A
TYR
247
1
10
6
A
PRO
294
A
PRO
294
HELX_P
A
ILE
306
A
ILE
306
1
11
13
A
ASP
330
A
ASP
330
HELX_P
A
GLY
345
A
GLY
345
1
12
16
metalc
2.889
A
ARG
125
A
O
ARG
125
1_555
A
MG
3001
B
MG
MG
1_555
metalc
2.565
A
ASP
127
A
OD1
ASP
127
1_555
A
MG
3001
B
MG
MG
1_555
metalc
2.960
A
THR
139
A
N
THR
139
1_555
A
MG
3001
B
MG
MG
1_555
metalc
2.677
A
MG
3001
B
MG
MG
1_555
A
HOH
5068
G
O
HOH
1_555
LIGASE
lipoyltransferase, lipoyl-amp, Ligase
LIPB_BOVIN
UNP
1
27
O46419
TVKSGLILQSISNDVYHNLAVEDWIHDHMNLEGKPVLFLWRNSPTVVIGRHQNPWQECNLNLMREEGVKLARRRSGGGTV
YHDMGNINLTFFTTKKKYDRMENLKLVVRALKAVHPHLDVQATKRFDLLLDGQFKISGTASKIGRNAAYHHCTLLCGTDG
TFLSSLLKSPYQGIRSNATASTPALVKNLMEKDPTLTCEVVINAVATEYATSHQIDNHIHLINPTDETVFPGINSKAIEL
QTWEWIYGKTPKFSVDTSFTVLHEQSHVEIKVFIDVKNGRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFSPIETTVLTS
ILHRTYPGDDELHSKWNILCEKIKGIM
27
373
2E5A
1
347
O46419
A
1
1
347
6
3
3
4
anti-parallel
anti-parallel
anti-parallel
parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
139
A
THR
139
A
ILE
143
A
ILE
143
A
ALA
148
A
ALA
148
A
LEU
155
A
LEU
155
A
ASN
86
A
ASN
86
A
THR
93
A
THR
93
A
VAL
36
A
VAL
36
A
TRP
40
A
TRP
40
A
LEU
6
A
LEU
6
A
SER
10
A
SER
10
A
HIS
220
A
HIS
220
A
ILE
222
A
ILE
222
A
LYS
69
A
LYS
69
A
ARG
72
A
ARG
72
A
THR
45
A
THR
45
A
ILE
48
A
ILE
48
A
VAL
80
A
VAL
80
A
HIS
82
A
HIS
82
A
VAL
120
A
VAL
120
A
ALA
122
A
ALA
122
A
LEU
128
A
LEU
128
A
LEU
130
A
LEU
130
A
PHE
134
A
PHE
134
A
SER
137
A
SER
137
A
ILE
174
A
ILE
174
A
SER
176
A
SER
176
A
PHE
253
A
PHE
253
A
VAL
261
A
VAL
261
A
VAL
268
A
VAL
268
A
LYS
277
A
LYS
277
A
ARG
280
A
ARG
280
A
GLU
287
A
GLU
287
152
P 31 2 1