1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tsuda, K.
Muto, Y.
Inoue, M.
Kigawa, T.
Terada, T.
Shirouzu, M.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
Solution structure of RNA binding domain in RNA binding motif protein 21
10.2210/pdb2e5g/pdb
pdb_00002e5g
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
9952.186
U6 snRNA-specific terminal uridylyltransferase 1
2.7.7.52
RNA recognition motif
1
man
polymer
U6-TUTase, RNA-binding protein 21, RNA-binding motif protein 21
no
no
GSSGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE
QKEFQSPASKSPKG
GSSGSSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPRE
QKEFQSPASKSPKG
A
hss001001956.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
TUT1, RBM21
9606
Homo sapiens
Cell-free synthesis
PLASMID
P060227-23
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2007-06-26
1
1
2008-04-30
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2006-12-21
REL
REL
structures with the least restraint violations,structures with the lowest energy,target function
100
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120mM
7.0
ambient
298
K
torsion angle dynamics, restrainted molecular dynamics
1
lowest energy
1.49mM 13C-15N PROTEIN, 20mM d-Tris-HCl(pH7.0), 100mM NaCl, 1mM d-DTT, 0.02% NaN3, 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio,F
processing
NMRPipe
20060702
Johnson,B.A
data analysis
NMRView
5.0.4
Kobayashi,N
data analysis
KUJIRA
0.9820
Guntert,P
structure solution
CYANA
2.0.17
Guntert,P
refinement
CYANA
2.0.17
800
Bruker
AVANCE
GLY
58
n
1
GLY
58
A
SER
59
n
2
SER
59
A
SER
60
n
3
SER
60
A
GLY
61
n
4
GLY
61
A
SER
62
n
5
SER
62
A
SER
63
n
6
SER
63
A
GLY
64
n
7
GLY
64
A
LEU
65
n
8
LEU
65
A
ARG
66
n
9
ARG
66
A
SER
67
n
10
SER
67
A
VAL
68
n
11
VAL
68
A
PHE
69
n
12
PHE
69
A
VAL
70
n
13
VAL
70
A
SER
71
n
14
SER
71
A
GLY
72
n
15
GLY
72
A
PHE
73
n
16
PHE
73
A
PRO
74
n
17
PRO
74
A
ARG
75
n
18
ARG
75
A
GLY
76
n
19
GLY
76
A
VAL
77
n
20
VAL
77
A
ASP
78
n
21
ASP
78
A
SER
79
n
22
SER
79
A
ALA
80
n
23
ALA
80
A
GLN
81
n
24
GLN
81
A
LEU
82
n
25
LEU
82
A
SER
83
n
26
SER
83
A
GLU
84
n
27
GLU
84
A
TYR
85
n
28
TYR
85
A
PHE
86
n
29
PHE
86
A
LEU
87
n
30
LEU
87
A
ALA
88
n
31
ALA
88
A
PHE
89
n
32
PHE
89
A
GLY
90
n
33
GLY
90
A
PRO
91
n
34
PRO
91
A
VAL
92
n
35
VAL
92
A
ALA
93
n
36
ALA
93
A
SER
94
n
37
SER
94
A
VAL
95
n
38
VAL
95
A
VAL
96
n
39
VAL
96
A
MET
97
n
40
MET
97
A
ASP
98
n
41
ASP
98
A
LYS
99
n
42
LYS
99
A
ASP
100
n
43
ASP
100
A
LYS
101
n
44
LYS
101
A
GLY
102
n
45
GLY
102
A
VAL
103
n
46
VAL
103
A
PHE
104
n
47
PHE
104
A
ALA
105
n
48
ALA
105
A
ILE
106
n
49
ILE
106
A
VAL
107
n
50
VAL
107
A
GLU
108
n
51
GLU
108
A
MET
109
n
52
MET
109
A
GLY
110
n
53
GLY
110
A
ASP
111
n
54
ASP
111
A
VAL
112
n
55
VAL
112
A
GLY
113
n
56
GLY
113
A
ALA
114
n
57
ALA
114
A
ARG
115
n
58
ARG
115
A
GLU
116
n
59
GLU
116
A
ALA
117
n
60
ALA
117
A
VAL
118
n
61
VAL
118
A
LEU
119
n
62
LEU
119
A
SER
120
n
63
SER
120
A
GLN
121
n
64
GLN
121
A
SER
122
n
65
SER
122
A
GLN
123
n
66
GLN
123
A
HIS
124
n
67
HIS
124
A
SER
125
n
68
SER
125
A
LEU
126
n
69
LEU
126
A
GLY
127
n
70
GLY
127
A
GLY
128
n
71
GLY
128
A
HIS
129
n
72
HIS
129
A
ARG
130
n
73
ARG
130
A
LEU
131
n
74
LEU
131
A
ARG
132
n
75
ARG
132
A
VAL
133
n
76
VAL
133
A
ARG
134
n
77
ARG
134
A
PRO
135
n
78
PRO
135
A
ARG
136
n
79
ARG
136
A
GLU
137
n
80
GLU
137
A
GLN
138
n
81
GLN
138
A
LYS
139
n
82
LYS
139
A
GLU
140
n
83
GLU
140
A
PHE
141
n
84
PHE
141
A
GLN
142
n
85
GLN
142
A
SER
143
n
86
SER
143
A
PRO
144
n
87
PRO
144
A
ALA
145
n
88
ALA
145
A
SER
146
n
89
SER
146
A
LYS
147
n
90
LYS
147
A
SER
148
n
91
SER
148
A
PRO
149
n
92
PRO
149
A
LYS
150
n
93
LYS
150
A
GLY
151
n
94
GLY
151
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
VAL
68
A
N
VAL
11
A
O
VAL
107
A
O
VAL
50
A
O
GLU
108
A
O
GLU
51
A
N
SER
94
A
N
SER
37
A
N
LEU
126
A
N
LEU
69
A
O
HIS
129
A
O
HIS
72
1
A
ARG
66
-94.01
41.35
1
A
SER
120
-88.74
39.56
1
A
SER
122
-64.49
-72.70
1
A
LEU
126
-118.33
73.88
1
A
PRO
135
-76.56
47.59
1
A
ARG
136
37.03
50.95
1
A
LYS
139
38.10
50.08
1
A
LYS
147
-175.03
145.29
2
A
SER
67
-171.88
146.58
2
A
PRO
74
-45.68
176.28
2
A
ASP
98
-49.92
155.55
2
A
SER
120
-98.87
43.66
2
A
SER
122
-50.88
-74.95
2
A
LEU
126
-98.04
49.82
2
A
GLU
137
-99.58
33.63
2
A
PHE
141
-54.99
105.60
3
A
SER
62
37.90
39.69
3
A
VAL
77
-36.86
137.51
3
A
SER
120
-97.33
36.17
3
A
SER
122
-69.36
-73.78
3
A
LEU
126
-119.43
58.62
3
A
GLU
137
-167.68
113.13
3
A
GLU
140
34.48
40.07
4
A
LYS
101
-130.11
-48.93
4
A
SER
120
-98.11
47.10
4
A
SER
122
-45.68
-73.74
4
A
LYS
139
-36.09
146.14
4
A
PRO
144
-77.32
40.50
4
A
LYS
147
-121.07
-57.14
5
A
LEU
65
-35.72
145.20
5
A
PRO
74
-45.54
172.93
5
A
VAL
77
-36.16
130.93
5
A
PRO
91
-45.76
155.10
5
A
SER
120
-96.33
42.96
5
A
SER
122
-45.16
-74.42
5
A
SER
148
-42.73
155.62
6
A
ARG
66
-96.44
31.63
6
A
PRO
74
-45.68
172.15
6
A
SER
122
-61.61
-73.35
6
A
LEU
126
-102.21
72.03
6
A
PRO
149
-45.78
171.42
7
A
LEU
65
-104.59
71.42
7
A
ARG
66
-103.40
48.15
7
A
ARG
75
-47.65
157.12
7
A
SER
120
-98.95
30.05
7
A
SER
122
-40.80
-73.37
7
A
PRO
144
-45.60
94.15
8
A
SER
79
-36.96
-34.72
8
A
ASP
98
-57.46
171.32
8
A
SER
120
-87.19
35.77
8
A
SER
122
-35.62
-74.60
8
A
SER
146
-170.51
138.92
9
A
ARG
66
-61.64
97.75
9
A
PRO
74
-45.56
166.11
9
A
SER
120
-89.75
45.34
9
A
SER
122
-66.15
-73.26
9
A
GLU
140
-174.98
115.26
10
A
ARG
66
-84.66
32.84
10
A
PRO
74
-45.92
177.02
10
A
SER
120
-95.17
41.38
10
A
SER
122
-60.93
-74.85
10
A
LEU
126
-93.31
48.48
11
A
ASP
98
-38.69
143.79
11
A
SER
120
-99.53
30.64
11
A
SER
122
-39.26
-74.53
11
A
PRO
144
-45.50
173.29
11
A
PRO
149
-46.13
171.66
12
A
LEU
65
-66.44
98.55
12
A
ARG
66
-107.23
44.61
12
A
ARG
75
-39.46
136.24
12
A
PRO
91
-46.51
153.22
12
A
LYS
99
-124.60
-52.06
12
A
SER
122
-59.75
-74.89
12
A
SER
125
-173.78
146.82
12
A
ARG
132
-113.21
51.59
12
A
SER
143
-171.20
144.06
12
A
ALA
145
70.27
32.85
13
A
PRO
74
-45.99
158.44
13
A
VAL
77
-35.04
125.15
13
A
SER
120
-96.33
36.56
13
A
SER
122
-61.98
-75.23
13
A
LYS
150
-37.48
131.40
14
A
LYS
101
-131.98
-48.25
14
A
SER
122
-61.46
-75.08
14
A
PRO
135
-46.89
152.22
14
A
GLU
137
36.24
39.80
14
A
GLU
140
34.43
39.06
14
A
PHE
141
-103.52
-67.36
14
A
LYS
150
-172.64
110.17
15
A
SER
120
-90.03
37.66
15
A
SER
122
-66.81
-74.66
15
A
HIS
129
-57.07
177.13
15
A
ARG
132
-114.87
74.43
15
A
PHE
141
-91.85
47.00
15
A
SER
143
-33.49
96.36
15
A
PRO
144
-45.83
108.95
16
A
SER
59
-69.85
98.12
16
A
SER
62
-99.30
36.87
16
A
SER
63
-170.33
145.93
16
A
ARG
66
-114.98
70.68
16
A
SER
120
-97.78
50.18
16
A
SER
122
-58.40
-72.18
16
A
PRO
135
-45.64
158.16
16
A
GLN
142
-174.97
133.74
17
A
LYS
101
-121.92
-54.65
17
A
SER
120
-88.15
41.27
17
A
SER
122
-99.02
-74.78
17
A
PRO
135
-45.54
108.40
17
A
GLN
142
-38.59
144.00
17
A
ALA
145
-174.60
108.69
18
A
ARG
66
-91.39
43.92
18
A
PRO
74
-45.61
165.61
18
A
VAL
77
-36.40
136.78
18
A
LYS
101
-123.26
-67.59
18
A
SER
120
-98.80
41.69
18
A
SER
122
-65.63
-74.98
18
A
LYS
147
-171.70
121.70
19
A
LEU
65
-56.14
-175.00
19
A
ARG
66
-106.52
59.35
19
A
SER
79
-35.66
-33.68
19
A
ASP
98
-49.44
156.10
19
A
SER
120
-91.64
42.06
19
A
SER
122
-47.41
-75.48
19
A
ARG
132
-108.42
78.72
19
A
PRO
149
-44.81
102.86
20
A
LYS
101
-123.92
-52.33
20
A
SER
120
-87.27
43.43
20
A
SER
122
-42.76
-70.36
20
A
LEU
126
-94.13
39.91
20
A
LYS
139
35.85
46.57
Solution structure of RNA binding domain in RNA binding motif protein 21
1
N
N
A
ASP
78
A
ASP
21
HELX_P
A
PHE
86
A
PHE
29
1
1
9
A
LEU
87
A
LEU
30
HELX_P
A
PHE
89
A
PHE
32
5
2
3
A
ASP
111
A
ASP
54
HELX_P
A
SER
120
A
SER
63
1
3
10
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
RRM domain, RBD, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, UNKNOWN FUNCTION
TUT1_HUMAN
UNP
1
55
Q9H6E5
LRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLSQSQHSLGGHRLRVRPREQKEFQSP
ASKSPKG
55
141
2E5G
65
151
Q9H6E5
A
1
8
94
1
cloning artifact
GLY
58
2E5G
A
Q9H6E5
UNP
1
1
cloning artifact
SER
59
2E5G
A
Q9H6E5
UNP
2
1
cloning artifact
SER
60
2E5G
A
Q9H6E5
UNP
3
1
cloning artifact
GLY
61
2E5G
A
Q9H6E5
UNP
4
1
cloning artifact
SER
62
2E5G
A
Q9H6E5
UNP
5
1
cloning artifact
SER
63
2E5G
A
Q9H6E5
UNP
6
1
cloning artifact
GLY
64
2E5G
A
Q9H6E5
UNP
7
3
2
anti-parallel
anti-parallel
anti-parallel
A
SER
67
A
SER
10
A
SER
71
A
SER
14
A
PHE
104
A
PHE
47
A
MET
109
A
MET
52
A
VAL
92
A
VAL
35
A
MET
97
A
MET
40
A
SER
125
A
SER
68
A
LEU
126
A
LEU
69
A
HIS
129
A
HIS
72
A
ARG
130
A
ARG
73