1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Yoneyama, M. Koshiba, S. Watabe, S. Harada, T. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking Zn 2 65.409 ZINC ION non-polymer To be Published 0353 Solution structure of the Zinc finger, C4-type domain of human COUP transcription factor 1 10.2210/pdb2ebl/pdb pdb_00002ebl 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9900.315 COUP transcription factor 1 Zinc finger, C4-type 1 man polymer 65.409 ZINC ION 2 syn non-polymer COUP-TF1, COUP-TF I, V-ERBA-related protein EAR-3 no no GSSGSSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV QRGSGPSSG GSSGSSGIECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAV QRGSGPSSG A hso004011358.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis NR2F1, EAR3, ERBAL3, TFCOUP1 9606 Homo sapiens PLASMID P051212-03 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif struct_site repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-02-19 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y PDBJ Y PDBJ 2007-02-09 REL ZN ZINC ION structures with the least restraint violations,target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 296 K torsion angle dynamics 1 lowest energy 1.22mM Zinc finger, C4-type domain U-15N,13C; 20mM d-Tris HCl (pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 0.05mM ZnCl2; 1mM IDA; 90% H2O, 10% D2O' 90% H2O/10% D2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20030801 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Bruker AVANCE ZN 191 2 ZN ZN 191 A ZN 241 2 ZN ZN 241 A GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ILE 8 n 8 ILE 8 A GLU 9 n 9 GLU 9 A CYS 10 n 10 CYS 10 A VAL 11 n 11 VAL 11 A VAL 12 n 12 VAL 12 A CYS 13 n 13 CYS 13 A GLY 14 n 14 GLY 14 A ASP 15 n 15 ASP 15 A LYS 16 n 16 LYS 16 A SER 17 n 17 SER 17 A SER 18 n 18 SER 18 A GLY 19 n 19 GLY 19 A LYS 20 n 20 LYS 20 A HIS 21 n 21 HIS 21 A TYR 22 n 22 TYR 22 A GLY 23 n 23 GLY 23 A GLN 24 n 24 GLN 24 A PHE 25 n 25 PHE 25 A THR 26 n 26 THR 26 A CYS 27 n 27 CYS 27 A GLU 28 n 28 GLU 28 A GLY 29 n 29 GLY 29 A CYS 30 n 30 CYS 30 A LYS 31 n 31 LYS 31 A SER 32 n 32 SER 32 A PHE 33 n 33 PHE 33 A PHE 34 n 34 PHE 34 A LYS 35 n 35 LYS 35 A ARG 36 n 36 ARG 36 A SER 37 n 37 SER 37 A VAL 38 n 38 VAL 38 A ARG 39 n 39 ARG 39 A ARG 40 n 40 ARG 40 A ASN 41 n 41 ASN 41 A LEU 42 n 42 LEU 42 A THR 43 n 43 THR 43 A TYR 44 n 44 TYR 44 A THR 45 n 45 THR 45 A CYS 46 n 46 CYS 46 A ARG 47 n 47 ARG 47 A ALA 48 n 48 ALA 48 A ASN 49 n 49 ASN 49 A ARG 50 n 50 ARG 50 A ASN 51 n 51 ASN 51 A CYS 52 n 52 CYS 52 A PRO 53 n 53 PRO 53 A ILE 54 n 54 ILE 54 A ASP 55 n 55 ASP 55 A GLN 56 n 56 GLN 56 A HIS 57 n 57 HIS 57 A HIS 58 n 58 HIS 58 A ARG 59 n 59 ARG 59 A ASN 60 n 60 ASN 60 A GLN 61 n 61 GLN 61 A CYS 62 n 62 CYS 62 A GLN 63 n 63 GLN 63 A TYR 64 n 64 TYR 64 A CYS 65 n 65 CYS 65 A ARG 66 n 66 ARG 66 A LEU 67 n 67 LEU 67 A LYS 68 n 68 LYS 68 A LYS 69 n 69 LYS 69 A CYS 70 n 70 CYS 70 A LEU 71 n 71 LEU 71 A LYS 72 n 72 LYS 72 A VAL 73 n 73 VAL 73 A GLY 74 n 74 GLY 74 A MET 75 n 75 MET 75 A ARG 76 n 76 ARG 76 A ARG 77 n 77 ARG 77 A GLU 78 n 78 GLU 78 A ALA 79 n 79 ALA 79 A VAL 80 n 80 VAL 80 A GLN 81 n 81 GLN 81 A ARG 82 n 82 ARG 82 A GLY 83 n 83 GLY 83 A SER 84 n 84 SER 84 A GLY 85 n 85 GLY 85 A PRO 86 n 86 PRO 86 A SER 87 n 87 SER 87 A SER 88 n 88 SER 88 A GLY 89 n 89 GLY 89 A author_defined_assembly 1 monomeric A CYS 10 A SG CYS 10 1_555 A ZN 191 B ZN ZN 1_555 A CYS 13 A SG CYS 13 1_555 103.3 A CYS 10 A SG CYS 10 1_555 A ZN 191 B ZN ZN 1_555 A CYS 27 A SG CYS 27 1_555 110.8 A CYS 13 A SG CYS 13 1_555 A ZN 191 B ZN ZN 1_555 A CYS 27 A SG CYS 27 1_555 109.3 A CYS 10 A SG CYS 10 1_555 A ZN 191 B ZN ZN 1_555 A CYS 30 A SG CYS 30 1_555 101.7 A CYS 13 A SG CYS 13 1_555 A ZN 191 B ZN ZN 1_555 A CYS 30 A SG CYS 30 1_555 115.2 A CYS 27 A SG CYS 27 1_555 A ZN 191 B ZN ZN 1_555 A CYS 30 A SG CYS 30 1_555 115.5 A CYS 46 A SG CYS 46 1_555 A ZN 241 C ZN ZN 1_555 A CYS 52 A SG CYS 52 1_555 106.5 A CYS 46 A SG CYS 46 1_555 A ZN 241 C ZN ZN 1_555 A CYS 62 A SG CYS 62 1_555 107.7 A CYS 52 A SG CYS 52 1_555 A ZN 241 C ZN ZN 1_555 A CYS 62 A SG CYS 62 1_555 106.6 A CYS 46 A SG CYS 46 1_555 A ZN 241 C ZN ZN 1_555 A CYS 65 A SG CYS 65 1_555 114.9 A CYS 52 A SG CYS 52 1_555 A ZN 241 C ZN ZN 1_555 A CYS 65 A SG CYS 65 1_555 112.6 A CYS 62 A SG CYS 62 1_555 A ZN 241 C ZN ZN 1_555 A CYS 65 A SG CYS 65 1_555 108.2 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N HIS 21 A N HIS 21 A O GLN 24 A O GLN 24 1 A SER 2 -104.16 42.13 1 A SER 6 -108.77 79.38 1 A VAL 11 -68.96 1.14 1 A LYS 16 -43.39 103.07 1 A ARG 36 -34.89 -30.05 1 A THR 43 -161.25 105.66 1 A CYS 46 -58.21 107.52 1 A ASN 49 -81.11 31.35 1 A HIS 57 -79.04 49.21 1 A ARG 59 -47.79 176.36 1 A ASN 60 -33.34 104.61 1 A CYS 62 -37.42 156.45 1 A LYS 69 -37.68 -28.41 1 A MET 75 -34.75 124.24 1 A VAL 80 -34.92 -37.56 1 A SER 88 -96.25 41.91 2 A SER 6 -104.97 47.77 2 A LYS 16 -44.65 103.43 2 A ARG 36 -34.83 -30.62 2 A ASN 41 73.79 33.50 2 A THR 43 -161.60 105.65 2 A ASN 49 -80.16 31.33 2 A PRO 53 -69.78 98.98 2 A HIS 57 -76.68 47.57 2 A LYS 69 -39.05 -25.73 2 A MET 75 -32.52 139.68 3 A LYS 16 -44.98 107.46 3 A ARG 36 -35.85 -30.40 3 A CYS 46 -69.04 97.50 3 A MET 75 -39.84 117.78 3 A PRO 86 -69.68 85.88 4 A SER 6 -65.40 93.03 4 A LYS 16 -46.75 103.38 4 A ARG 36 -36.15 -30.03 4 A ASN 49 -79.30 24.29 4 A PRO 53 -69.78 84.97 4 A ILE 54 -64.50 91.27 4 A HIS 57 34.93 31.52 4 A HIS 58 33.97 49.19 4 A TYR 64 -49.12 -73.59 4 A MET 75 -33.37 119.39 4 A PRO 86 -69.75 87.79 5 A LYS 16 -45.81 104.90 5 A ARG 36 -36.13 -28.06 5 A ASN 49 -79.38 41.13 5 A CYS 62 -34.09 149.83 5 A LYS 69 -38.87 -26.37 5 A MET 75 -39.98 124.23 5 A SER 87 37.94 42.46 6 A SER 2 -68.60 85.62 6 A LYS 16 -44.82 102.97 6 A ASN 49 -77.60 41.76 6 A LYS 69 -38.05 -28.77 6 A MET 75 -33.62 135.69 7 A LYS 16 -42.92 97.99 7 A ARG 36 -34.75 -31.99 7 A THR 43 -160.83 105.56 7 A CYS 46 -59.61 109.16 7 A ASN 49 -79.36 34.54 7 A PRO 53 -69.78 87.87 7 A HIS 57 -77.62 48.97 7 A TYR 64 -53.12 -71.21 7 A LYS 69 -37.53 -27.82 7 A MET 75 -35.72 122.63 7 A SER 88 34.28 45.99 8 A LYS 16 -45.81 99.48 8 A ARG 36 -35.01 -30.25 8 A ASN 41 73.83 33.10 8 A ASN 49 -82.11 33.36 8 A PRO 53 -69.79 83.84 8 A ILE 54 -62.04 97.48 8 A ASN 60 -108.52 65.00 8 A CYS 62 -36.67 154.55 8 A LYS 69 -37.08 -28.63 8 A MET 75 -34.82 110.15 8 A PRO 86 -69.84 0.80 8 A SER 88 -172.23 122.69 9 A SER 3 -82.49 46.65 9 A SER 5 -34.94 123.92 9 A LYS 16 -46.15 102.75 9 A ARG 36 -38.03 -26.03 9 A CYS 46 -37.83 114.40 9 A ASN 49 -79.55 39.85 9 A PRO 53 -69.76 89.39 9 A HIS 57 33.83 35.41 9 A HIS 58 30.76 47.56 9 A ASN 60 -54.90 178.44 9 A CYS 62 -35.73 151.50 9 A LYS 69 -38.44 -26.61 9 A MET 75 -35.67 111.70 9 A PRO 86 -69.73 85.82 10 A SER 5 34.11 47.11 10 A SER 6 -101.81 41.54 10 A VAL 11 -69.66 1.81 10 A LYS 16 -40.83 104.84 10 A ARG 36 -39.46 -30.33 10 A ASN 49 -78.07 42.23 10 A PRO 53 -69.74 89.24 10 A LYS 69 -39.30 -25.72 11 A LYS 16 -43.91 104.08 11 A ARG 36 -37.93 -28.28 11 A ASN 41 70.64 32.31 11 A CYS 46 -58.89 106.11 11 A ASN 49 -80.95 35.15 11 A CYS 62 -36.24 150.55 11 A SER 87 -101.53 42.51 12 A SER 3 -37.03 101.49 12 A SER 5 -112.91 79.61 12 A LYS 16 -41.02 107.75 12 A TYR 22 70.09 40.28 12 A ARG 36 -34.99 -31.82 12 A ASN 49 -79.57 23.19 12 A PRO 53 -69.76 90.52 12 A TYR 64 -47.55 -72.89 12 A LYS 69 -37.03 -28.31 12 A GLN 81 -109.91 69.13 12 A SER 88 -53.02 94.68 13 A SER 6 -105.15 45.92 13 A LYS 16 -47.89 107.39 13 A ARG 36 -36.95 -28.55 13 A ASN 49 -79.09 40.76 13 A ARG 50 37.56 30.55 13 A HIS 57 -92.80 50.13 13 A ARG 59 -57.54 -177.84 13 A ASN 60 -34.93 107.78 13 A CYS 62 -36.56 146.29 13 A MET 75 -36.58 117.88 14 A SER 5 -37.27 139.97 14 A LYS 16 -43.27 107.44 14 A CYS 27 -53.49 174.74 14 A ASN 41 74.68 32.09 14 A ASN 49 -82.58 34.53 14 A PRO 53 -69.76 85.30 14 A LYS 69 -39.27 -25.65 14 A MET 75 -37.19 121.78 14 A SER 84 -112.44 78.76 14 A SER 88 -66.72 95.28 15 A VAL 11 -69.72 2.22 15 A LYS 16 -46.72 103.99 15 A ARG 36 -38.01 -26.54 15 A ASN 41 71.94 40.89 15 A ASN 49 -80.51 31.40 15 A PRO 53 -69.77 89.77 15 A ARG 59 -102.59 -66.02 15 A ASN 60 -68.12 92.75 15 A TYR 64 -49.35 -72.15 15 A MET 75 -35.34 116.08 15 A GLN 81 -34.36 103.82 16 A SER 5 -99.36 43.20 16 A SER 6 -167.02 116.29 16 A LYS 16 -45.60 100.94 16 A ARG 36 -34.76 -34.47 16 A THR 43 -162.38 112.79 16 A ASN 49 -79.98 34.50 16 A ARG 50 44.32 29.75 16 A GLN 56 -94.84 -60.59 16 A ARG 59 -62.17 -178.30 16 A ASN 60 -33.91 112.96 16 A CYS 62 -36.71 155.29 16 A LYS 69 -36.21 -29.75 16 A MET 75 -32.15 139.03 16 A VAL 80 -33.83 -37.99 16 A GLN 81 -119.35 78.09 17 A SER 5 -64.13 99.40 17 A SER 6 -45.56 101.15 17 A LYS 16 -47.18 106.07 17 A ASN 41 71.40 39.79 17 A ASN 49 -78.50 41.15 17 A ARG 50 37.06 30.11 17 A PRO 53 -69.78 96.49 17 A LYS 69 -39.51 -26.48 17 A MET 75 -33.39 138.34 18 A SER 2 -82.97 46.37 18 A LYS 16 -40.79 109.88 18 A TYR 22 71.07 42.66 18 A ARG 36 -36.14 -29.00 18 A ASN 41 70.82 36.03 18 A CYS 46 -38.18 119.35 18 A ASN 49 -77.72 41.76 18 A CYS 62 -34.69 151.35 18 A MET 75 -34.69 126.70 18 A SER 84 -51.71 174.34 19 A SER 2 -69.84 89.19 19 A LYS 16 -45.47 106.19 19 A ARG 36 -37.38 -27.96 19 A ASN 41 70.85 43.96 19 A ASN 49 -77.48 41.93 19 A PRO 53 -69.77 87.64 19 A ILE 54 -69.65 98.12 19 A ARG 59 -91.91 -64.24 19 A ASN 60 -69.82 88.88 19 A CYS 62 -38.27 149.08 19 A LYS 69 -38.36 -26.50 19 A MET 75 -38.13 124.71 19 A GLN 81 -178.97 138.39 19 A SER 88 -81.56 42.71 20 A LYS 16 -43.93 107.79 20 A CYS 46 -37.05 114.24 20 A ASN 49 -80.08 39.94 20 A PRO 53 -69.80 98.92 20 A CYS 62 -38.80 134.72 20 A TYR 64 -52.62 -72.00 20 A ARG 82 -47.71 173.25 20 A SER 87 -172.73 119.01 Solution structure of the Zinc finger, C4-type domain of human COUP transcription factor 1 1 N N 2 N N 2 N N A CYS 27 A CYS 27 HELX_P A ARG 39 A ARG 39 1 1 13 A GLN 63 A GLN 63 HELX_P A GLY 74 A GLY 74 1 2 12 A ARG 76 A ARG 76 HELX_P A GLN 81 A GLN 81 1 3 6 metalc 2.359 A CYS 10 A SG CYS 10 1_555 A ZN 191 B ZN ZN 1_555 metalc 2.184 A CYS 13 A SG CYS 13 1_555 A ZN 191 B ZN ZN 1_555 metalc 2.174 A CYS 27 A SG CYS 27 1_555 A ZN 191 B ZN ZN 1_555 metalc 2.227 A CYS 30 A SG CYS 30 1_555 A ZN 191 B ZN ZN 1_555 metalc 2.201 A CYS 46 A SG CYS 46 1_555 A ZN 241 C ZN ZN 1_555 metalc 2.248 A CYS 52 A SG CYS 52 1_555 A ZN 241 C ZN ZN 1_555 metalc 2.386 A CYS 62 A SG CYS 62 1_555 A ZN 241 C ZN ZN 1_555 metalc 2.209 A CYS 65 A SG CYS 65 1_555 A ZN 241 C ZN ZN 1_555 TRANSCRIPTION DNA-binding, Metal-binding, Nuclear protein, Receptor, Transcription, Transcription regulation, Zinc, EAR3, ERBAL3, TFCOUP1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI COT1_HUMAN UNP 1 84 P10589 IECVVCGDKSSGKHYGQFTCEGCKSFFKRSVRRNLTYTCRANRNCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRG 84 159 2EBL 8 83 P10589 A 1 8 83 1 expression tag GLY 1 2EBL A P10589 UNP 1 1 expression tag SER 2 2EBL A P10589 UNP 2 1 expression tag SER 3 2EBL A P10589 UNP 3 1 expression tag GLY 4 2EBL A P10589 UNP 4 1 expression tag SER 5 2EBL A P10589 UNP 5 1 expression tag SER 6 2EBL A P10589 UNP 6 1 expression tag GLY 7 2EBL A P10589 UNP 7 1 expression tag SER 84 2EBL A P10589 UNP 84 1 expression tag GLY 85 2EBL A P10589 UNP 85 1 expression tag PRO 86 2EBL A P10589 UNP 86 1 expression tag SER 87 2EBL A P10589 UNP 87 1 expression tag SER 88 2EBL A P10589 UNP 88 1 expression tag GLY 89 2EBL A P10589 UNP 89 2 anti-parallel A LYS 20 A LYS 20 A HIS 21 A HIS 21 A GLN 24 A GLN 24 A PHE 25 A PHE 25 BINDING SITE FOR RESIDUE ZN A 191 A ZN 191 Software 4 BINDING SITE FOR RESIDUE ZN A 241 A ZN 241 Software 4 A CYS 10 A CYS 10 4 1_555 A CYS 13 A CYS 13 4 1_555 A CYS 27 A CYS 27 4 1_555 A CYS 30 A CYS 30 4 1_555 A CYS 46 A CYS 46 4 1_555 A CYS 52 A CYS 52 4 1_555 A CYS 62 A CYS 62 4 1_555 A CYS 65 A CYS 65 4 1_555