1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Niraula, T.N. Tomizawa, T. Koshiba, K. Inoue, M. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Solution Structure of PDZ domain of PDZ and LIM domain protein 10.2210/pdb2eeg/pdb pdb_00002eeg 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 9604.780 PDZ and LIM domain protein 4 PDZ domain 1 man polymer LIM protein RIL, Reversion-induced LIM protein no no GSSGSSGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH DHLTLSVSSGPSSG GSSGSSGMPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCH DHLTLSVSSGPSSG A hsi002004534.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis PDLIM4 9606 Homo sapiens Plasmid P050627-04 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-08-21 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2007-02-15 REL REL structures with the least restraint violations, target function 100 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 120mM 7.0 ambient 296 K torsion angle dynamics 1 lowest energy 2.64mM PDZ domain U-13C,15N; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D20, 90% H2O 10% D20, 90% H2O Bruker collection XwinNMR 2.6 Delaglio, F. processing NMRPipe 20031121 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Bruker AVANCE GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A MET 8 n 8 MET 8 A PRO 9 n 9 PRO 9 A HIS 10 n 10 HIS 10 A SER 11 n 11 SER 11 A VAL 12 n 12 VAL 12 A THR 13 n 13 THR 13 A LEU 14 n 14 LEU 14 A ARG 15 n 15 ARG 15 A GLY 16 n 16 GLY 16 A PRO 17 n 17 PRO 17 A SER 18 n 18 SER 18 A PRO 19 n 19 PRO 19 A TRP 20 n 20 TRP 20 A GLY 21 n 21 GLY 21 A PHE 22 n 22 PHE 22 A ARG 23 n 23 ARG 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A GLY 26 n 26 GLY 26 A GLY 27 n 27 GLY 27 A ARG 28 n 28 ARG 28 A ASP 29 n 29 ASP 29 A PHE 30 n 30 PHE 30 A SER 31 n 31 SER 31 A ALA 32 n 32 ALA 32 A PRO 33 n 33 PRO 33 A LEU 34 n 34 LEU 34 A THR 35 n 35 THR 35 A ILE 36 n 36 ILE 36 A SER 37 n 37 SER 37 A ARG 38 n 38 ARG 38 A VAL 39 n 39 VAL 39 A HIS 40 n 40 HIS 40 A ALA 41 n 41 ALA 41 A GLY 42 n 42 GLY 42 A SER 43 n 43 SER 43 A LYS 44 n 44 LYS 44 A ALA 45 n 45 ALA 45 A ALA 46 n 46 ALA 46 A LEU 47 n 47 LEU 47 A ALA 48 n 48 ALA 48 A ALA 49 n 49 ALA 49 A LEU 50 n 50 LEU 50 A CYS 51 n 51 CYS 51 A PRO 52 n 52 PRO 52 A GLY 53 n 53 GLY 53 A ASP 54 n 54 ASP 54 A LEU 55 n 55 LEU 55 A ILE 56 n 56 ILE 56 A GLN 57 n 57 GLN 57 A ALA 58 n 58 ALA 58 A ILE 59 n 59 ILE 59 A ASN 60 n 60 ASN 60 A GLY 61 n 61 GLY 61 A GLU 62 n 62 GLU 62 A SER 63 n 63 SER 63 A THR 64 n 64 THR 64 A GLU 65 n 65 GLU 65 A LEU 66 n 66 LEU 66 A MET 67 n 67 MET 67 A THR 68 n 68 THR 68 A HIS 69 n 69 HIS 69 A LEU 70 n 70 LEU 70 A GLU 71 n 71 GLU 71 A ALA 72 n 72 ALA 72 A GLN 73 n 73 GLN 73 A ASN 74 n 74 ASN 74 A ARG 75 n 75 ARG 75 A ILE 76 n 76 ILE 76 A LYS 77 n 77 LYS 77 A GLY 78 n 78 GLY 78 A CYS 79 n 79 CYS 79 A HIS 80 n 80 HIS 80 A ASP 81 n 81 ASP 81 A HIS 82 n 82 HIS 82 A LEU 83 n 83 LEU 83 A THR 84 n 84 THR 84 A LEU 85 n 85 LEU 85 A SER 86 n 86 SER 86 A VAL 87 n 87 VAL 87 A SER 88 n 88 SER 88 A SER 89 n 89 SER 89 A GLY 90 n 90 GLY 90 A PRO 91 n 91 PRO 91 A SER 92 n 92 SER 92 A SER 93 n 93 SER 93 A GLY 94 n 94 GLY 94 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 12 A N VAL 12 A O LEU 85 A O LEU 85 A O SER 86 A O SER 86 A N GLN 57 A N GLN 57 A N ILE 59 A N ILE 59 A O GLU 62 A O GLU 62 A N VAL 25 A N VAL 25 A O THR 35 A O THR 35 1 A PRO 17 -69.74 -163.50 2 A PRO 17 -69.76 -163.15 2 A PRO 19 -69.75 -178.18 2 A HIS 40 -54.28 173.90 2 A ASP 81 -96.41 -68.25 3 A PRO 17 -69.76 -166.86 3 A PRO 19 -69.74 -178.81 4 A PRO 17 -69.74 -163.47 4 A HIS 80 -96.34 -68.17 4 A ASP 81 -94.83 -66.79 5 A PRO 17 -69.71 -163.51 5 A PRO 19 -69.71 -178.37 5 A HIS 80 -91.47 -61.67 5 A ASP 81 -59.55 177.16 6 A PRO 17 -69.81 -165.56 6 A GLU 65 -56.22 -71.01 6 A HIS 80 -96.98 -64.77 6 A ASP 81 -91.94 -66.47 7 A PRO 19 -69.78 -178.21 7 A HIS 40 -52.11 170.66 7 A PRO 91 -69.75 2.68 8 A PRO 17 -69.76 -163.38 8 A PRO 19 -69.74 -176.40 8 A SER 43 -54.30 173.12 9 A PRO 17 -69.70 -164.08 9 A PRO 91 -69.76 -178.88 10 A PRO 17 -69.82 -164.38 10 A PRO 19 -69.78 -174.80 10 A HIS 80 -97.46 -68.19 10 A ASP 81 -97.70 -66.00 11 A PRO 17 -69.78 -171.12 11 A SER 43 -58.94 171.29 12 A PRO 17 -69.74 -163.77 12 A PRO 19 -69.78 -177.65 12 A SER 43 -54.65 170.98 12 A GLU 65 -62.67 -70.48 12 A HIS 80 -97.45 -60.57 12 A ASP 81 -98.01 -63.05 13 A ASP 81 -58.38 178.09 14 A PRO 17 -69.73 -168.26 14 A PRO 19 -69.80 -178.17 15 A PRO 17 -69.78 -164.50 15 A PRO 19 -69.82 -178.25 15 A ASN 74 -38.73 -38.35 15 A PRO 91 -69.79 -172.45 16 A PRO 17 -69.81 -168.69 16 A PRO 19 -69.77 -173.14 16 A HIS 40 -57.97 172.75 17 A PRO 17 -69.74 -164.31 17 A PRO 91 -69.81 90.19 18 A PRO 17 -69.79 -164.62 18 A PRO 19 -69.76 -176.91 19 A PRO 17 -69.79 -167.59 19 A PRO 19 -69.77 -173.76 20 A PRO 17 -69.76 -163.52 20 A PRO 19 -69.81 -177.19 20 A GLU 65 -63.04 -70.23 Solution Structure of PDZ domain of PDZ and LIM domain protein 1 N N A SER 43 A SER 43 HELX_P A ALA 48 A ALA 48 1 1 6 A THR 68 A THR 68 HELX_P A GLY 78 A GLY 78 1 2 11 METAL BINDING PROTEIN pdz domain, pdz and lim domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN A GLY 16 A GLY 16 1 A PRO 17 A PRO 17 0.05 A SER 18 A SER 18 1 A PRO 19 A PRO 19 -0.04 A GLY 16 A GLY 16 2 A PRO 17 A PRO 17 0.02 A SER 18 A SER 18 2 A PRO 19 A PRO 19 -0.07 A GLY 16 A GLY 16 3 A PRO 17 A PRO 17 0.00 A SER 18 A SER 18 3 A PRO 19 A PRO 19 -0.08 A GLY 16 A GLY 16 4 A PRO 17 A PRO 17 0.03 A SER 18 A SER 18 4 A PRO 19 A PRO 19 -0.14 A GLY 16 A GLY 16 5 A PRO 17 A PRO 17 0.01 A SER 18 A SER 18 5 A PRO 19 A PRO 19 -0.05 A GLY 16 A GLY 16 6 A PRO 17 A PRO 17 0.09 A SER 18 A SER 18 6 A PRO 19 A PRO 19 -0.03 A GLY 16 A GLY 16 7 A PRO 17 A PRO 17 0.05 A SER 18 A SER 18 7 A PRO 19 A PRO 19 0.04 A GLY 16 A GLY 16 8 A PRO 17 A PRO 17 0.01 A SER 18 A SER 18 8 A PRO 19 A PRO 19 -0.05 A GLY 16 A GLY 16 9 A PRO 17 A PRO 17 0.00 A SER 18 A SER 18 9 A PRO 19 A PRO 19 -0.07 A GLY 16 A GLY 16 10 A PRO 17 A PRO 17 0.10 A SER 18 A SER 18 10 A PRO 19 A PRO 19 0.04 A GLY 16 A GLY 16 11 A PRO 17 A PRO 17 0.07 A SER 18 A SER 18 11 A PRO 19 A PRO 19 0.03 A GLY 16 A GLY 16 12 A PRO 17 A PRO 17 0.04 A SER 18 A SER 18 12 A PRO 19 A PRO 19 0.00 A GLY 16 A GLY 16 13 A PRO 17 A PRO 17 0.02 A SER 18 A SER 18 13 A PRO 19 A PRO 19 -0.04 A GLY 16 A GLY 16 14 A PRO 17 A PRO 17 0.05 A SER 18 A SER 18 14 A PRO 19 A PRO 19 0.04 A GLY 16 A GLY 16 15 A PRO 17 A PRO 17 0.07 A SER 18 A SER 18 15 A PRO 19 A PRO 19 0.04 A GLY 16 A GLY 16 16 A PRO 17 A PRO 17 0.09 A SER 18 A SER 18 16 A PRO 19 A PRO 19 -0.06 A GLY 16 A GLY 16 17 A PRO 17 A PRO 17 0.04 A SER 18 A SER 18 17 A PRO 19 A PRO 19 -0.07 A GLY 16 A GLY 16 18 A PRO 17 A PRO 17 0.05 A SER 18 A SER 18 18 A PRO 19 A PRO 19 -0.01 A GLY 16 A GLY 16 19 A PRO 17 A PRO 17 0.07 A SER 18 A SER 18 19 A PRO 19 A PRO 19 0.00 A GLY 16 A GLY 16 20 A PRO 17 A PRO 17 0.05 A SER 18 A SER 18 20 A PRO 19 A PRO 19 0.01 PDLI4_HUMAN UNP 1 1 P50479 MPHSVTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTLSV S 1 81 2EEG 8 88 P50479 A 1 8 88 1 expression tag GLY 1 2EEG A P50479 UNP 1 1 expression tag SER 2 2EEG A P50479 UNP 2 1 expression tag SER 3 2EEG A P50479 UNP 3 1 expression tag GLY 4 2EEG A P50479 UNP 4 1 expression tag SER 5 2EEG A P50479 UNP 5 1 expression tag SER 6 2EEG A P50479 UNP 6 1 expression tag GLY 7 2EEG A P50479 UNP 7 1 expression tag SER 89 2EEG A P50479 UNP 89 1 expression tag GLY 90 2EEG A P50479 UNP 90 1 expression tag PRO 91 2EEG A P50479 UNP 91 1 expression tag SER 92 2EEG A P50479 UNP 92 1 expression tag SER 93 2EEG A P50479 UNP 93 1 expression tag GLY 94 2EEG A P50479 UNP 94 4 2 anti-parallel anti-parallel anti-parallel anti-parallel A HIS 10 A HIS 10 A LEU 14 A LEU 14 A LEU 83 A LEU 83 A SER 88 A SER 88 A LEU 55 A LEU 55 A ILE 59 A ILE 59 A GLU 62 A GLU 62 A SER 63 A SER 63 A LEU 24 A LEU 24 A VAL 25 A VAL 25 A THR 35 A THR 35 A ILE 36 A ILE 36