1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Niraula, T.N. Tochio, N. Tomizawa, T. Koshiba, K. Inoue, M. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Solution Structure of First PDZ domain of PDZ Domain Containing Protein 7 10.2210/pdb2eeh/pdb pdb_00002eeh 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 10137.392 PDZ domain-containing protein 7 PDZ domain 1 man polymer no no GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVL TSSSRLHMMVRRMGSGPSSG GSSGSSGSDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVL TSSSRLHMMVRRMGSGPSSG A hss001000688.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis PDZK7 9606 Homo sapiens plasmid P050905-06 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-08-21 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2007-02-15 REL REL structures with the least restraint violations, target function 100 20 3D_13C-separated_NOESY 3D_15N-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 0.32mM PDZ domain U-13C,15N; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D20, 90% H2O 10% D20, 90% H2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20031121 Johnson, B.A. data analysis NMRView 5.04 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 1.0.8 Guntert, P. refinement CYANA 1.0.8 800 Bruker AVANCE GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A SER 8 n 8 SER 8 A ASP 9 n 9 ASP 9 A ILE 10 n 10 ILE 10 A ILE 11 n 11 ILE 11 A HIS 12 n 12 HIS 12 A SER 13 n 13 SER 13 A VAL 14 n 14 VAL 14 A ARG 15 n 15 ARG 15 A VAL 16 n 16 VAL 16 A GLU 17 n 17 GLU 17 A LYS 18 n 18 LYS 18 A SER 19 n 19 SER 19 A PRO 20 n 20 PRO 20 A ALA 21 n 21 ALA 21 A GLY 22 n 22 GLY 22 A ARG 23 n 23 ARG 23 A LEU 24 n 24 LEU 24 A GLY 25 n 25 GLY 25 A PHE 26 n 26 PHE 26 A SER 27 n 27 SER 27 A VAL 28 n 28 VAL 28 A ARG 29 n 29 ARG 29 A GLY 30 n 30 GLY 30 A GLY 31 n 31 GLY 31 A SER 32 n 32 SER 32 A GLU 33 n 33 GLU 33 A HIS 34 n 34 HIS 34 A GLY 35 n 35 GLY 35 A LEU 36 n 36 LEU 36 A GLY 37 n 37 GLY 37 A ILE 38 n 38 ILE 38 A PHE 39 n 39 PHE 39 A VAL 40 n 40 VAL 40 A SER 41 n 41 SER 41 A LYS 42 n 42 LYS 42 A VAL 43 n 43 VAL 43 A GLU 44 n 44 GLU 44 A GLU 45 n 45 GLU 45 A GLY 46 n 46 GLY 46 A SER 47 n 47 SER 47 A SER 48 n 48 SER 48 A ALA 49 n 49 ALA 49 A GLU 50 n 50 GLU 50 A ARG 51 n 51 ARG 51 A ALA 52 n 52 ALA 52 A GLY 53 n 53 GLY 53 A LEU 54 n 54 LEU 54 A CYS 55 n 55 CYS 55 A VAL 56 n 56 VAL 56 A GLY 57 n 57 GLY 57 A ASP 58 n 58 ASP 58 A LYS 59 n 59 LYS 59 A ILE 60 n 60 ILE 60 A THR 61 n 61 THR 61 A GLU 62 n 62 GLU 62 A VAL 63 n 63 VAL 63 A ASN 64 n 64 ASN 64 A GLY 65 n 65 GLY 65 A LEU 66 n 66 LEU 66 A SER 67 n 67 SER 67 A LEU 68 n 68 LEU 68 A GLU 69 n 69 GLU 69 A SER 70 n 70 SER 70 A THR 71 n 71 THR 71 A THR 72 n 72 THR 72 A MET 73 n 73 MET 73 A GLY 74 n 74 GLY 74 A SER 75 n 75 SER 75 A ALA 76 n 76 ALA 76 A VAL 77 n 77 VAL 77 A LYS 78 n 78 LYS 78 A VAL 79 n 79 VAL 79 A LEU 80 n 80 LEU 80 A THR 81 n 81 THR 81 A SER 82 n 82 SER 82 A SER 83 n 83 SER 83 A SER 84 n 84 SER 84 A ARG 85 n 85 ARG 85 A LEU 86 n 86 LEU 86 A HIS 87 n 87 HIS 87 A MET 88 n 88 MET 88 A MET 89 n 89 MET 89 A VAL 90 n 90 VAL 90 A ARG 91 n 91 ARG 91 A ARG 92 n 92 ARG 92 A MET 93 n 93 MET 93 A GLY 94 n 94 GLY 94 A SER 95 n 95 SER 95 A GLY 96 n 96 GLY 96 A PRO 97 n 97 PRO 97 A SER 98 n 98 SER 98 A SER 99 n 99 SER 99 A GLY 100 n 100 GLY 100 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 10 A N ILE 10 A O ARG 92 A O ARG 92 A O MET 89 A O MET 89 A N GLU 62 A N GLU 62 A O ILE 60 A O ILE 60 A N ILE 38 A N ILE 38 A O PHE 39 A O PHE 39 A N ARG 29 A N ARG 29 A N VAL 16 A N VAL 16 A O LEU 86 A O LEU 86 A O MET 89 A O MET 89 A N GLU 62 A N GLU 62 A N VAL 63 A N VAL 63 A O LEU 66 A O LEU 66 1 A A O H ALA LEU 76 80 1.54 1 A A H O ARG PHE 29 39 1.56 1 A A H O SER LYS 27 42 1.60 2 A A O H ALA LEU 76 80 1.57 2 A A O H MET VAL 73 77 1.58 3 A A O H GLY LYS 74 78 1.55 4 A A H O SER LYS 27 42 1.55 4 A A O H GLY LYS 74 78 1.58 4 A A O H VAL THR 77 81 1.59 5 A A H O SER LYS 27 42 1.51 5 A A O H ALA LEU 76 80 1.55 5 A A O H GLY LYS 74 78 1.59 6 A A H O SER LYS 27 42 1.51 6 A A O H GLY LYS 74 78 1.56 7 A A H O SER LYS 27 42 1.52 7 A A O H GLY LYS 74 78 1.52 7 A A O H SER SER 27 41 1.59 8 A A H O SER LYS 27 42 1.52 8 A A O H ALA LEU 76 80 1.52 8 A A O H SER SER 27 41 1.56 9 A A H O SER LYS 27 42 1.51 9 A A O H GLY LYS 74 78 1.56 9 A A H O ARG PHE 29 39 1.56 9 A A O H SER SER 27 41 1.57 10 A A O H ALA LEU 76 80 1.54 10 A A O H GLY LYS 74 78 1.55 10 A A H O SER LYS 27 42 1.56 11 A A O H VAL THR 77 81 1.51 11 A A O H GLY LYS 74 78 1.53 12 A A H O SER LYS 27 42 1.51 12 A A O H GLY LYS 74 78 1.51 13 A A O H GLY LYS 74 78 1.57 14 A A O H GLY LYS 74 78 1.52 14 A A O H MET VAL 73 77 1.57 14 A A H O SER LYS 27 42 1.58 15 A A O H GLY LYS 74 78 1.52 15 A A O H VAL THR 77 81 1.53 16 A A O H GLY LYS 74 78 1.58 16 A A H O SER LYS 27 42 1.58 16 A A O H GLU MET 62 89 1.59 17 A A O H ALA LEU 76 80 1.60 18 A A H O HIS VAL 12 90 1.52 18 A A O H SER SER 27 41 1.59 18 A A O H GLY LYS 74 78 1.59 19 A A H O ARG PHE 29 39 1.57 19 A A O H GLY LYS 74 78 1.60 20 A A O H GLY LYS 74 78 1.52 20 A A H O SER LYS 27 42 1.59 1 A SER 5 178.73 132.81 1 A SER 6 60.79 160.05 1 A ARG 23 -38.81 156.30 1 A LEU 24 -41.05 157.94 1 A GLU 33 -174.80 -59.93 1 A GLU 44 -39.04 152.04 1 A ASN 64 47.49 24.99 1 A SER 70 -157.29 42.51 1 A SER 83 160.41 156.45 1 A SER 95 69.12 167.59 2 A ASP 9 -50.72 108.07 2 A ALA 21 -130.21 -61.69 2 A LEU 24 -44.02 157.95 2 A SER 32 -47.83 174.00 2 A GLU 33 63.31 158.64 2 A HIS 34 57.95 108.95 2 A ASN 64 56.82 18.66 2 A SER 70 -151.95 30.06 2 A THR 72 -78.90 -165.80 2 A SER 83 176.23 154.35 2 A SER 98 66.54 98.40 3 A SER 2 54.90 103.33 3 A SER 5 -114.73 73.53 3 A SER 6 -129.90 -54.22 3 A ALA 21 -121.39 -56.30 3 A LEU 24 -45.77 156.29 3 A SER 32 176.49 100.07 3 A GLU 33 178.22 -70.55 3 A SER 70 -179.09 67.26 3 A LYS 78 -39.93 -29.81 3 A SER 83 159.62 138.85 3 A ARG 85 -162.69 88.62 3 A SER 98 -128.92 -58.26 3 A SER 99 59.62 114.42 4 A SER 3 73.57 -58.74 4 A SER 8 61.94 169.18 4 A ASP 9 -40.79 155.22 4 A ALA 21 -143.92 -60.96 4 A ARG 23 61.57 145.47 4 A SER 32 -97.24 -75.23 4 A HIS 34 60.55 107.95 4 A LEU 36 50.90 -174.10 4 A GLU 44 -38.35 145.45 4 A SER 70 -161.69 34.94 4 A THR 72 -67.99 -164.59 4 A SER 83 159.28 142.95 4 A SER 84 -97.25 33.04 4 A ARG 85 169.40 101.50 4 A SER 98 75.22 -60.84 4 A SER 99 47.69 84.37 5 A SER 3 62.72 135.73 5 A SER 5 63.52 147.42 5 A SER 8 63.03 82.06 5 A ASP 9 60.60 95.19 5 A ALA 21 -155.81 -58.37 5 A LEU 24 -41.03 159.53 5 A SER 32 -50.84 179.53 5 A GLU 33 60.38 170.95 5 A HIS 34 70.20 -61.18 5 A ALA 49 -62.20 -72.15 5 A LEU 68 -102.71 43.45 5 A SER 70 -167.72 55.13 5 A SER 83 172.02 144.52 5 A ARG 85 -166.73 97.47 5 A SER 95 -171.03 129.75 5 A SER 99 60.87 167.16 6 A SER 3 -138.47 -57.31 6 A SER 5 -124.32 -57.77 6 A ASP 9 -178.77 90.25 6 A ALA 21 -43.80 104.23 6 A ARG 23 61.88 165.21 6 A SER 32 -125.85 -54.27 6 A GLU 33 -46.67 158.06 6 A HIS 34 70.15 -60.39 6 A SER 41 -126.31 -50.07 6 A SER 70 -151.69 38.60 6 A THR 72 -64.78 -171.08 6 A MET 73 -90.52 -61.75 6 A SER 83 159.57 131.62 6 A ARG 85 -168.20 91.72 6 A SER 98 -172.84 -56.47 7 A SER 6 175.45 146.24 7 A ALA 21 178.35 -60.01 7 A ARG 23 -173.15 97.60 7 A LEU 24 -44.82 154.91 7 A SER 32 -154.15 87.87 7 A GLU 33 74.71 -63.73 7 A LEU 36 42.80 -167.19 7 A LEU 68 -109.67 48.67 7 A SER 70 170.44 48.90 7 A SER 83 159.45 129.99 7 A ARG 85 -179.31 84.03 7 A SER 95 172.02 146.61 7 A SER 99 180.00 -58.77 8 A SER 5 -145.79 -57.42 8 A SER 6 178.25 -63.10 8 A ASP 9 61.10 99.40 8 A SER 32 45.23 85.50 8 A GLU 33 -133.18 -48.90 8 A ALA 49 -60.61 -70.33 8 A ASN 64 38.32 32.96 8 A SER 70 84.80 26.12 8 A LYS 78 -45.88 -71.41 8 A SER 83 159.80 166.28 8 A ARG 85 -156.06 87.65 8 A SER 98 177.26 118.17 9 A SER 3 -120.37 -58.10 9 A SER 5 -144.69 -57.31 9 A SER 6 59.01 156.47 9 A SER 8 177.99 -62.73 9 A LEU 24 -47.55 152.42 9 A HIS 34 72.37 -60.51 9 A SER 70 -178.69 46.02 9 A SER 83 159.88 129.37 9 A ARG 85 -162.46 96.61 9 A SER 95 61.82 135.38 9 A SER 98 -176.49 104.79 10 A SER 5 -49.81 165.80 10 A SER 6 -129.54 -61.65 10 A ASP 9 -170.71 121.38 10 A ALA 21 64.04 102.29 10 A ARG 23 -178.40 144.13 10 A LEU 24 -47.18 160.57 10 A GLU 33 66.45 -74.50 10 A HIS 34 -62.90 -79.45 10 A LEU 36 -125.27 -169.55 10 A ASN 64 39.09 30.85 10 A THR 72 -68.54 -172.73 10 A SER 83 167.31 138.12 10 A ARG 85 179.80 93.04 11 A SER 5 -170.56 145.08 11 A ASP 9 61.92 154.96 11 A ALA 21 -172.56 -60.32 11 A LEU 24 -41.39 158.45 11 A SER 32 -39.56 129.71 11 A GLU 33 -51.69 107.29 11 A HIS 34 -146.29 -56.56 11 A ASN 64 59.80 16.49 11 A SER 70 -153.25 50.11 11 A SER 83 160.46 142.45 11 A ARG 85 -171.52 89.24 11 A SER 95 62.84 127.76 12 A SER 8 -147.40 -60.49 12 A ALA 21 79.10 -60.49 12 A ARG 23 -171.89 86.92 12 A LEU 24 -41.95 152.16 12 A GLU 33 -169.01 -50.82 12 A SER 70 -176.41 49.97 12 A SER 82 -115.79 -147.09 12 A SER 83 55.00 109.50 12 A SER 98 60.90 167.83 12 A SER 99 179.77 135.39 13 A SER 2 59.51 167.47 13 A SER 5 44.53 89.29 13 A ALA 21 -121.16 -59.29 13 A ARG 23 61.36 161.23 13 A LEU 24 -40.95 153.34 13 A SER 32 178.19 160.41 13 A GLU 44 -47.60 175.03 13 A ALA 49 -60.14 -70.43 13 A ASN 64 48.14 24.43 13 A SER 70 -114.62 51.11 13 A LYS 78 -39.07 -30.42 13 A SER 83 159.10 125.24 13 A SER 99 -138.58 -58.74 14 A SER 5 -178.71 -53.78 14 A ALA 21 174.51 177.92 14 A ARG 23 176.63 152.10 14 A GLU 33 -131.04 -61.31 14 A ASN 64 84.44 -42.25 14 A LEU 68 -105.48 42.11 14 A SER 70 -142.10 37.03 14 A THR 72 -60.04 -167.48 14 A MET 73 -95.90 -62.80 14 A SER 83 177.02 136.07 14 A ARG 85 -157.63 89.51 14 A SER 95 -176.88 127.24 14 A SER 98 60.17 151.24 15 A SER 2 -69.04 85.22 15 A SER 5 63.50 120.67 15 A ASP 9 -63.97 86.06 15 A ILE 10 -46.39 163.98 15 A SER 19 -176.17 130.02 15 A ALA 21 -153.93 -66.22 15 A LEU 24 -41.99 162.27 15 A GLU 44 -38.39 123.27 15 A ASN 64 48.34 24.32 15 A SER 82 -107.14 -141.89 15 A SER 83 58.38 111.50 15 A SER 99 -107.20 -61.62 16 A SER 3 -179.55 111.18 16 A SER 8 -135.87 -46.37 16 A ARG 23 178.38 141.02 16 A GLU 33 -54.56 89.39 16 A HIS 34 -140.35 -62.56 16 A SER 41 -122.21 -50.29 16 A GLU 44 -38.27 149.52 16 A ASN 64 39.00 30.82 16 A SER 70 -140.64 45.54 16 A SER 83 162.48 129.12 16 A SER 95 -150.25 -54.38 16 A SER 98 64.67 141.05 17 A SER 2 63.27 146.06 17 A SER 5 60.82 150.17 17 A SER 8 73.10 -60.62 17 A ALA 21 -128.47 -60.35 17 A SER 32 -171.63 107.02 17 A GLU 33 -179.79 -44.47 17 A SER 41 -127.62 -51.09 17 A ASN 64 39.70 35.12 17 A SER 70 -153.07 33.30 17 A SER 82 -129.44 -147.21 17 A SER 83 52.97 172.18 17 A SER 98 -154.15 -52.49 17 A SER 99 61.73 107.96 18 A SER 8 -50.25 171.47 18 A ASP 9 68.73 161.55 18 A ILE 10 62.74 164.52 18 A ARG 23 36.20 -153.53 18 A SER 32 58.54 113.22 18 A GLU 33 -155.36 -47.45 18 A HIS 34 -158.60 65.53 18 A LEU 36 -46.19 170.26 18 A SER 70 -174.98 47.83 18 A SER 83 158.78 160.40 18 A SER 98 65.45 124.66 18 A SER 99 63.00 149.16 19 A SER 5 71.30 -61.64 19 A SER 8 -143.18 -62.08 19 A SER 19 158.26 -49.40 19 A ARG 23 60.33 92.70 19 A LEU 24 -44.17 150.31 19 A SER 32 -171.41 146.77 19 A HIS 34 -176.60 -56.24 19 A ASN 64 56.59 19.52 19 A SER 70 -151.41 27.89 19 A SER 82 166.94 127.27 19 A SER 83 -141.25 22.67 19 A SER 84 86.61 -43.76 19 A ARG 85 -162.16 101.87 19 A MET 93 60.83 136.24 19 A SER 95 65.20 124.97 19 A SER 98 -149.64 -59.01 20 A ASP 9 -40.44 107.11 20 A ALA 21 -155.78 -61.78 20 A LEU 36 52.08 177.27 20 A SER 70 -171.49 40.87 20 A THR 72 -65.32 -172.82 20 A MET 73 -91.73 -61.19 20 A SER 82 -137.71 -148.46 20 A SER 83 59.30 120.10 20 A ARG 85 -162.67 106.60 20 A SER 98 59.64 114.56 Solution Structure of First PDZ domain of PDZ Domain Containing Protein 7 1 N N A SER 47 A SER 47 HELX_P A GLY 53 A GLY 53 1 1 7 A THR 72 A THR 72 HELX_P A SER 82 A SER 82 1 2 11 METAL BINDING PROTEIN PDZ domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN PDZD7_HUMAN UNP 1 81 Q9H5P4 SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTSSSRLH MMVRRMG 81 167 2EEH 8 94 Q9H5P4 A 1 8 94 1 expression tag GLY 1 2EEH A Q9H5P4 UNP 1 1 expression tag SER 2 2EEH A Q9H5P4 UNP 2 1 expression tag SER 3 2EEH A Q9H5P4 UNP 3 1 expression tag GLY 4 2EEH A Q9H5P4 UNP 4 1 expression tag SER 5 2EEH A Q9H5P4 UNP 5 1 expression tag SER 6 2EEH A Q9H5P4 UNP 6 1 expression tag GLY 7 2EEH A Q9H5P4 UNP 7 1 expression tag SER 95 2EEH A Q9H5P4 UNP 95 1 expression tag GLY 96 2EEH A Q9H5P4 UNP 96 1 expression tag PRO 97 2EEH A Q9H5P4 UNP 97 1 expression tag SER 98 2EEH A Q9H5P4 UNP 98 1 expression tag SER 99 2EEH A Q9H5P4 UNP 99 1 expression tag GLY 100 2EEH A Q9H5P4 UNP 100 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ILE 10 A ILE 10 A ILE 11 A ILE 11 A LEU 86 A LEU 86 A ARG 92 A ARG 92 A LYS 59 A LYS 59 A VAL 63 A VAL 63 A ILE 38 A ILE 38 A VAL 43 A VAL 43 A PHE 26 A PHE 26 A ARG 29 A ARG 29 A VAL 14 A VAL 14 A VAL 16 A VAL 16 A LEU 86 A LEU 86 A ARG 92 A ARG 92 A LYS 59 A LYS 59 A VAL 63 A VAL 63 A LEU 66 A LEU 66 A SER 67 A SER 67