1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Niraula, T.N. Tomizawa, T. Koshiba, K. Inoue, M. Kigawa, T. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution Structure of Second PDZ domain of PDZ Domain Containing Protein 1 10.2210/pdb2eei/pdb pdb_00002eei 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 11357.752 PDZ domain-containing protein 1 pdz domain 1 man polymer CFTR-associated protein of 70 kDa, Na/Pi cotransporter C-terminal-associated protein, NaPi-Cap1, Na(+)/H(+) exchanger regulatory factor 3, Sodium-hydrogen exchanger regulatory factor 3 no no GSSGSSGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSG SRVMFLLVDKETDKRHVEQKSGPSSG GSSGSSGQPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSG SRVMFLLVDKETDKRHVEQKSGPSSG A hss001001614.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis PDZK1 9606 Homo sapiens Plasmid P050905-17 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2008-02-26 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Different domain of the same protein Y PDBJ Y PDBJ 2007-02-15 REL REL structures with the least restraint violations, target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 3.36mM PDZ domain U-13C,15N; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 10% D20, 90% H2O 10% D20, 90% H2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20031121 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Bruker AVANCE GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A GLN 8 n 8 GLN 8 A PRO 9 n 9 PRO 9 A ARG 10 n 10 ARG 10 A LEU 11 n 11 LEU 11 A CYS 12 n 12 CYS 12 A TYR 13 n 13 TYR 13 A LEU 14 n 14 LEU 14 A VAL 15 n 15 VAL 15 A LYS 16 n 16 LYS 16 A GLU 17 n 17 GLU 17 A GLY 18 n 18 GLY 18 A GLY 19 n 19 GLY 19 A SER 20 n 20 SER 20 A TYR 21 n 21 TYR 21 A GLY 22 n 22 GLY 22 A PHE 23 n 23 PHE 23 A SER 24 n 24 SER 24 A LEU 25 n 25 LEU 25 A LYS 26 n 26 LYS 26 A THR 27 n 27 THR 27 A VAL 28 n 28 VAL 28 A GLN 29 n 29 GLN 29 A GLY 30 n 30 GLY 30 A LYS 31 n 31 LYS 31 A LYS 32 n 32 LYS 32 A GLY 33 n 33 GLY 33 A VAL 34 n 34 VAL 34 A TYR 35 n 35 TYR 35 A MET 36 n 36 MET 36 A THR 37 n 37 THR 37 A ASP 38 n 38 ASP 38 A ILE 39 n 39 ILE 39 A THR 40 n 40 THR 40 A PRO 41 n 41 PRO 41 A GLN 42 n 42 GLN 42 A GLY 43 n 43 GLY 43 A VAL 44 n 44 VAL 44 A ALA 45 n 45 ALA 45 A MET 46 n 46 MET 46 A ARG 47 n 47 ARG 47 A ALA 48 n 48 ALA 48 A GLY 49 n 49 GLY 49 A VAL 50 n 50 VAL 50 A LEU 51 n 51 LEU 51 A ALA 52 n 52 ALA 52 A ASP 53 n 53 ASP 53 A ASP 54 n 54 ASP 54 A HIS 55 n 55 HIS 55 A LEU 56 n 56 LEU 56 A ILE 57 n 57 ILE 57 A GLU 58 n 58 GLU 58 A VAL 59 n 59 VAL 59 A ASN 60 n 60 ASN 60 A GLY 61 n 61 GLY 61 A GLU 62 n 62 GLU 62 A ASN 63 n 63 ASN 63 A VAL 64 n 64 VAL 64 A GLU 65 n 65 GLU 65 A ASP 66 n 66 ASP 66 A ALA 67 n 67 ALA 67 A SER 68 n 68 SER 68 A HIS 69 n 69 HIS 69 A GLU 70 n 70 GLU 70 A GLU 71 n 71 GLU 71 A VAL 72 n 72 VAL 72 A VAL 73 n 73 VAL 73 A GLU 74 n 74 GLU 74 A LYS 75 n 75 LYS 75 A VAL 76 n 76 VAL 76 A LYS 77 n 77 LYS 77 A LYS 78 n 78 LYS 78 A SER 79 n 79 SER 79 A GLY 80 n 80 GLY 80 A SER 81 n 81 SER 81 A ARG 82 n 82 ARG 82 A VAL 83 n 83 VAL 83 A MET 84 n 84 MET 84 A PHE 85 n 85 PHE 85 A LEU 86 n 86 LEU 86 A LEU 87 n 87 LEU 87 A VAL 88 n 88 VAL 88 A ASP 89 n 89 ASP 89 A LYS 90 n 90 LYS 90 A GLU 91 n 91 GLU 91 A THR 92 n 92 THR 92 A ASP 93 n 93 ASP 93 A LYS 94 n 94 LYS 94 A ARG 95 n 95 ARG 95 A HIS 96 n 96 HIS 96 A VAL 97 n 97 VAL 97 A GLU 98 n 98 GLU 98 A GLN 99 n 99 GLN 99 A LYS 100 n 100 LYS 100 A SER 101 n 101 SER 101 A GLY 102 n 102 GLY 102 A PRO 103 n 103 PRO 103 A SER 104 n 104 SER 104 A SER 105 n 105 SER 105 A GLY 106 n 106 GLY 106 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N CYS 12 A N CYS 12 A O PHE 85 A O PHE 85 A O LEU 86 A O LEU 86 A N ILE 57 A N ILE 57 A O ASP 54 A O ASP 54 A N MET 36 A N MET 36 A O TYR 35 A O TYR 35 A N LYS 26 A N LYS 26 A N CYS 12 A N CYS 12 A O PHE 85 A O PHE 85 A O LEU 86 A O LEU 86 A N ILE 57 A N ILE 57 A N VAL 59 A N VAL 59 A O GLU 62 A O GLU 62 1 A GLU 17 -131.80 -56.97 1 A TYR 21 -50.21 176.48 1 A GLN 42 34.41 43.64 1 A GLU 58 -173.84 145.07 1 A ASN 60 47.51 29.17 1 A SER 79 -36.22 -39.11 1 A HIS 96 -64.33 95.99 1 A GLN 99 -51.26 88.92 2 A GLU 17 -121.69 -57.21 2 A TYR 21 -42.92 -73.15 2 A PHE 23 -56.55 176.11 2 A GLN 29 -82.05 41.87 2 A THR 40 -37.86 127.52 2 A ASP 53 39.86 28.06 2 A LYS 94 -82.12 41.33 2 A SER 105 -127.17 -52.54 3 A LYS 16 -49.51 104.17 3 A GLU 17 -101.70 -63.33 3 A TYR 21 -48.96 167.08 3 A HIS 55 -54.67 102.61 3 A VAL 73 -39.69 -31.28 3 A ARG 95 -69.48 95.17 4 A LYS 16 -62.47 85.81 4 A SER 20 -105.93 -68.77 4 A THR 40 -33.74 135.93 4 A GLN 42 33.85 40.50 4 A ASN 63 -55.77 105.43 4 A SER 81 -121.28 -52.07 4 A ASP 93 -35.28 118.31 5 A SER 6 -95.51 -63.09 5 A PRO 9 -69.83 -168.90 5 A TYR 21 -52.14 174.16 5 A LYS 31 -68.85 -177.03 5 A ASP 53 38.89 31.28 5 A HIS 55 -52.13 108.73 5 A ASN 63 -54.18 101.39 5 A VAL 73 -37.01 -34.86 5 A ARG 95 -65.94 91.25 5 A SER 105 -97.03 -61.66 6 A PRO 9 -69.76 -168.49 6 A LYS 16 -44.35 106.66 6 A GLU 17 -103.25 -62.07 6 A TYR 21 -53.92 -175.69 6 A ALA 45 -71.39 -72.99 6 A ASP 53 47.24 29.24 6 A VAL 73 -35.16 -35.64 6 A ARG 95 -174.82 130.94 6 A HIS 96 -81.20 45.77 6 A SER 101 -34.65 98.68 6 A PRO 103 -69.74 2.76 6 A SER 104 72.45 40.94 7 A LYS 16 -61.92 99.13 7 A GLU 17 -99.76 -60.78 7 A TYR 21 -66.14 -72.17 7 A THR 40 -38.44 137.69 7 A GLN 42 36.07 37.29 7 A HIS 55 -52.60 100.76 7 A SER 81 -132.50 -37.34 7 A LYS 94 -58.95 89.66 7 A HIS 96 -47.39 101.38 7 A VAL 97 -36.19 125.25 8 A PRO 9 -69.73 -176.74 8 A GLU 17 -122.03 -64.18 8 A TYR 21 -68.26 -71.97 8 A GLN 42 34.15 46.73 8 A GLU 58 -173.30 144.53 8 A ASN 60 38.05 34.77 8 A VAL 73 -38.43 -35.09 8 A LYS 94 -41.74 105.97 8 A SER 101 -102.67 -62.58 8 A SER 104 -58.25 99.06 9 A LYS 16 -51.43 95.35 9 A TYR 21 -38.57 -70.13 9 A GLN 42 70.30 35.75 9 A GLU 58 -170.12 142.42 9 A ASN 63 -35.45 122.59 9 A SER 79 -35.11 -38.40 9 A GLN 99 -53.26 177.11 10 A SER 3 -35.08 116.56 10 A PRO 9 -69.78 -179.17 10 A LYS 16 -47.62 105.03 10 A TYR 21 -47.58 172.98 10 A HIS 55 -51.62 103.23 10 A HIS 96 -67.30 87.75 10 A PRO 103 -69.70 1.79 10 A SER 104 -35.86 121.12 11 A SER 2 -85.93 48.16 11 A SER 5 -93.03 40.51 11 A LYS 16 -45.29 105.72 11 A THR 40 -34.33 131.84 11 A ASP 53 47.57 26.44 11 A SER 105 37.90 47.02 12 A ASN 63 -50.37 107.11 12 A SER 104 -120.58 -57.53 12 A SER 105 -59.22 107.64 13 A TYR 21 -44.05 -74.03 13 A LYS 31 -58.47 -177.43 13 A GLN 42 71.22 50.67 13 A ALA 45 -73.08 -70.03 13 A ASN 63 -58.75 109.45 14 A PRO 9 -69.74 -175.15 14 A LYS 16 -59.17 93.35 14 A HIS 55 -50.59 100.49 14 A ASN 63 -58.80 109.30 14 A VAL 73 -38.90 -38.10 14 A GLN 99 -171.56 139.66 14 A SER 105 34.36 43.09 15 A GLU 17 -123.46 -73.48 15 A TYR 21 -66.88 -174.56 15 A THR 37 -120.13 -50.67 15 A THR 40 -34.17 137.26 15 A HIS 55 -57.97 109.35 15 A ASN 63 -47.33 105.98 15 A SER 104 -36.43 108.91 16 A SER 3 -34.77 123.58 16 A PRO 9 -69.79 -170.60 16 A TYR 21 -68.89 -175.49 16 A VAL 44 -54.16 -71.19 16 A ASN 60 36.94 30.29 16 A ASP 66 -108.89 40.04 17 A SER 3 -171.17 144.82 17 A GLU 17 -120.64 -60.55 17 A SER 79 -35.12 -38.78 17 A ASP 93 -34.58 128.52 17 A SER 101 -53.70 106.53 18 A SER 3 -52.92 106.04 18 A PRO 9 -69.79 -179.56 18 A LYS 16 -56.59 100.09 18 A TYR 21 -46.64 173.20 18 A GLU 58 -175.57 142.58 18 A GLN 99 42.43 28.48 19 A PRO 9 -69.76 -171.37 19 A LYS 16 -44.18 106.58 19 A TYR 21 -51.35 172.26 19 A LYS 31 -60.80 -179.12 19 A ALA 52 -46.77 158.98 19 A HIS 55 -53.49 108.92 20 A SER 5 -170.88 125.46 20 A TYR 21 -51.37 -73.86 20 A ALA 45 -63.75 -71.67 20 A ASP 53 73.65 44.56 20 A ASN 60 48.48 27.51 20 A GLU 62 -162.86 114.99 20 A ASP 93 -81.93 39.16 20 A LYS 94 33.51 45.48 20 A PRO 103 -69.78 2.72 20 A SER 104 -34.53 99.99 Solution Structure of Second PDZ domain of PDZ Domain Containing Protein 1 1 N N A GLY 43 A GLY 43 HELX_P A GLY 49 A GLY 49 1 1 7 A SER 68 A SER 68 HELX_P A GLY 80 A GLY 80 1 2 13 METAL BINDING PROTEIN PDZ domain, regulatory factor, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN PDZD1_HUMAN UNP 1 132 Q5T2W1 QPRLCYLVKEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVMFLL VDKETDKRHVEQK 132 224 2EEI 8 100 Q5T2W1 A 1 8 100 1 expression tag GLY 1 2EEI A Q5T2W1 UNP 1 1 expression tag SER 2 2EEI A Q5T2W1 UNP 2 1 expression tag SER 3 2EEI A Q5T2W1 UNP 3 1 expression tag GLY 4 2EEI A Q5T2W1 UNP 4 1 expression tag SER 5 2EEI A Q5T2W1 UNP 5 1 expression tag SER 6 2EEI A Q5T2W1 UNP 6 1 expression tag GLY 7 2EEI A Q5T2W1 UNP 7 1 expression tag SER 101 2EEI A Q5T2W1 UNP 101 1 expression tag GLY 102 2EEI A Q5T2W1 UNP 102 1 expression tag PRO 103 2EEI A Q5T2W1 UNP 103 1 expression tag SER 104 2EEI A Q5T2W1 UNP 104 1 expression tag SER 105 2EEI A Q5T2W1 UNP 105 1 expression tag GLY 106 2EEI A Q5T2W1 UNP 106 5 4 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A ARG 10 A ARG 10 A VAL 15 A VAL 15 A ARG 82 A ARG 82 A LEU 87 A LEU 87 A ASP 54 A ASP 54 A VAL 59 A VAL 59 A TYR 35 A TYR 35 A MET 36 A MET 36 A LEU 25 A LEU 25 A LYS 26 A LYS 26 A ARG 10 A ARG 10 A VAL 15 A VAL 15 A ARG 82 A ARG 82 A LEU 87 A LEU 87 A ASP 54 A ASP 54 A VAL 59 A VAL 59 A GLU 62 A GLU 62 A ASN 63 A ASN 63