0.012201
0.000000
0.000000
0.000000
0.012201
0.000000
0.000000
0.000000
0.012201
0.00000
0.00000
0.00000
Sakai, H.
Shinkai, A.
Kitamura, Y.
Kuramitsu, S.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
24
90.00
90.00
90.00
81.961
81.961
81.961
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C10 H16 N5 O13 P3
507.181
ADENOSINE-5'-TRIPHOSPHATE
non-polymer
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
P
N
58
N
O
N
59
N
O
N
60
N
O
N
61
R
P
N
62
N
O
N
63
N
O
N
64
N
O
N
65
R
P
N
66
N
O
N
67
N
O
N
68
N
O
N
69
N
O
N
70
N
C
N
71
R
C
N
72
N
O
N
73
S
C
N
74
N
O
N
75
R
C
N
76
N
O
N
77
R
C
Y
78
N
N
Y
79
N
C
Y
80
N
N
Y
81
N
C
Y
82
N
C
N
83
N
N
Y
84
N
N
Y
85
N
C
Y
86
N
N
Y
87
N
C
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
H
N
97
N
H
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
CL
N
105
N
N
N
106
S
C
N
107
N
C
N
108
N
O
N
109
N
C
N
110
N
C
N
111
N
C
N
112
N
O
N
113
N
N
N
114
N
O
N
115
N
H
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
O
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
N
N
145
N
C
N
146
N
C
N
147
N
O
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
N
N
155
S
C
N
156
N
C
N
157
N
O
N
158
N
C
Y
159
N
C
Y
160
N
N
Y
161
N
C
Y
162
N
C
Y
163
N
N
N
164
N
O
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
O
N
176
N
H
N
177
N
H
N
178
N
N
N
179
S
C
N
180
N
C
N
181
N
O
N
182
S
C
N
183
N
C
N
184
N
C
N
185
N
C
N
186
N
O
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
N
N
201
S
C
N
202
N
C
N
203
N
O
N
204
N
C
N
205
N
C
N
206
N
C
N
207
N
C
N
208
N
O
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
N
N
223
S
C
N
224
N
C
N
225
N
O
N
226
N
C
N
227
N
C
N
228
N
C
N
229
N
C
N
230
N
N
N
231
N
O
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
N
N
248
S
C
N
249
N
C
N
250
N
O
N
251
N
C
N
252
N
C
N
253
N
S
N
254
N
C
N
255
N
O
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
N
N
268
S
C
N
269
N
C
N
270
N
O
N
271
N
C
Y
272
N
C
Y
273
N
C
Y
274
N
C
Y
275
N
C
Y
276
N
C
Y
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
C
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
R
C
N
312
N
O
N
313
N
C
N
314
N
O
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
N
N
325
S
C
N
326
N
C
N
327
N
O
N
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
O
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
N
353
N
C
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
doub
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
doub
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
Y
88
N
sing
Y
89
N
sing
Y
90
N
doub
N
91
N
sing
Y
92
N
sing
Y
93
N
sing
Y
94
N
doub
N
95
N
sing
Y
96
N
doub
N
97
N
sing
N
98
N
sing
Y
99
N
sing
Y
100
N
doub
N
101
N
sing
Y
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
doub
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
doub
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
doub
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
Y
160
N
sing
Y
161
N
doub
Y
162
N
doub
N
163
N
sing
Y
164
N
sing
N
165
N
sing
Y
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
doub
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
doub
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
doub
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
doub
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
Y
268
N
doub
Y
269
N
sing
Y
270
N
sing
N
271
N
sing
Y
272
N
doub
N
273
N
sing
Y
274
N
doub
N
275
N
sing
Y
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
doub
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
doub
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
doub
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
Y
324
N
doub
Y
325
N
sing
Y
326
N
sing
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
doub
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
To be Published
0353
The crystal structure of PII protein
10.2210/pdb2eg2/pdb
pdb_00002eg2
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
DIAMOND TRICHROMATOR
IMAGE PLATE
2006-12-13
RIGAKU RAXIS V
SINGLE WAVELENGTH
M
x-ray
1
1.0
1.0
BL45XU
SPring-8
1.0
SYNCHROTRON
SPRING-8 BEAMLINE BL45XU
12515.567
Nitrogen regulatory protein P-II
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
507.181
ADENOSINE-5'-TRIPHOSPHATE
1
syn
non-polymer
18.015
water
89
nat
water
no
no
MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKT
AQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI
MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKT
AQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI
A
aae001000109.2
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Aquifex
Escherichia
sample
glnB
63363
Aquifex aeolicus
562
Escherichia coli
BL21-CodonPlus(DE3)-RIL
plasmid
pET-21a
1
1.83
32.88
4.6
ammonium acetate, sodium acetate trihydrate, PEG4000, glycerol anhydrous, pH4.6, microbatch method, temperature 291K
291
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_site
repository
Initial release
Derived calculations
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2008-03-04
1
1
2011-07-13
1
2
2023-10-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2007-02-27
REL
REL
CL
CHLORIDE ION
ATP
ADENOSINE-5'-TRIPHOSPHATE
HOH
water
2EG1
PDB ENTRY 2EG1
PDB
experimental model
CL1
1
2
CL
CL
601
A
ATP
1
3
ATP
ATP
501
A
HOH
1
4
HOH
HOH
602
A
HOH
2
4
HOH
HOH
603
A
HOH
3
4
HOH
HOH
604
A
HOH
4
4
HOH
HOH
605
A
HOH
5
4
HOH
HOH
606
A
HOH
6
4
HOH
HOH
607
A
HOH
7
4
HOH
HOH
608
A
HOH
8
4
HOH
HOH
609
A
HOH
9
4
HOH
HOH
610
A
HOH
10
4
HOH
HOH
611
A
HOH
11
4
HOH
HOH
612
A
HOH
12
4
HOH
HOH
613
A
HOH
13
4
HOH
HOH
614
A
HOH
14
4
HOH
HOH
615
A
HOH
15
4
HOH
HOH
616
A
HOH
16
4
HOH
HOH
617
A
HOH
17
4
HOH
HOH
618
A
HOH
18
4
HOH
HOH
619
A
HOH
19
4
HOH
HOH
620
A
HOH
20
4
HOH
HOH
621
A
HOH
21
4
HOH
HOH
622
A
HOH
22
4
HOH
HOH
623
A
HOH
23
4
HOH
HOH
624
A
HOH
24
4
HOH
HOH
625
A
HOH
25
4
HOH
HOH
626
A
HOH
26
4
HOH
HOH
627
A
HOH
27
4
HOH
HOH
628
A
HOH
28
4
HOH
HOH
629
A
HOH
29
4
HOH
HOH
630
A
HOH
30
4
HOH
HOH
631
A
HOH
31
4
HOH
HOH
632
A
HOH
32
4
HOH
HOH
633
A
HOH
33
4
HOH
HOH
634
A
HOH
34
4
HOH
HOH
635
A
HOH
35
4
HOH
HOH
636
A
HOH
36
4
HOH
HOH
637
A
HOH
37
4
HOH
HOH
638
A
HOH
38
4
HOH
HOH
639
A
HOH
39
4
HOH
HOH
640
A
HOH
40
4
HOH
HOH
641
A
HOH
41
4
HOH
HOH
642
A
HOH
42
4
HOH
HOH
643
A
HOH
43
4
HOH
HOH
644
A
HOH
44
4
HOH
HOH
645
A
HOH
45
4
HOH
HOH
646
A
HOH
46
4
HOH
HOH
647
A
HOH
47
4
HOH
HOH
648
A
HOH
48
4
HOH
HOH
649
A
HOH
49
4
HOH
HOH
650
A
HOH
50
4
HOH
HOH
651
A
HOH
51
4
HOH
HOH
652
A
HOH
52
4
HOH
HOH
653
A
HOH
53
4
HOH
HOH
654
A
HOH
54
4
HOH
HOH
655
A
HOH
55
4
HOH
HOH
656
A
HOH
56
4
HOH
HOH
657
A
HOH
57
4
HOH
HOH
658
A
HOH
58
4
HOH
HOH
659
A
HOH
59
4
HOH
HOH
660
A
HOH
60
4
HOH
HOH
661
A
HOH
61
4
HOH
HOH
662
A
HOH
62
4
HOH
HOH
663
A
HOH
63
4
HOH
HOH
664
A
HOH
64
4
HOH
HOH
665
A
HOH
65
4
HOH
HOH
666
A
HOH
66
4
HOH
HOH
667
A
HOH
67
4
HOH
HOH
668
A
HOH
68
4
HOH
HOH
669
A
HOH
69
4
HOH
HOH
670
A
HOH
70
4
HOH
HOH
671
A
HOH
71
4
HOH
HOH
672
A
HOH
72
4
HOH
HOH
673
A
HOH
73
4
HOH
HOH
674
A
HOH
74
4
HOH
HOH
675
A
HOH
75
4
HOH
HOH
676
A
HOH
76
4
HOH
HOH
677
A
HOH
77
4
HOH
HOH
678
A
HOH
78
4
HOH
HOH
679
A
HOH
79
4
HOH
HOH
680
A
HOH
80
4
HOH
HOH
681
A
HOH
81
4
HOH
HOH
682
A
HOH
82
4
HOH
HOH
683
A
HOH
83
4
HOH
HOH
684
A
HOH
84
4
HOH
HOH
685
A
HOH
85
4
HOH
HOH
686
A
HOH
86
4
HOH
HOH
687
A
HOH
87
4
HOH
HOH
688
A
HOH
88
4
HOH
HOH
689
A
HOH
89
4
HOH
HOH
690
A
MET
1
n
1
MET
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
GLU
5
n
5
GLU
5
A
ALA
6
n
6
ALA
6
A
ILE
7
n
7
ILE
7
A
ILE
8
n
8
ILE
8
A
LYS
9
n
9
LYS
9
A
PRO
10
n
10
PRO
10
A
PHE
11
n
11
PHE
11
A
LYS
12
n
12
LYS
12
A
LEU
13
n
13
LEU
13
A
ASP
14
n
14
ASP
14
A
GLU
15
n
15
GLU
15
A
VAL
16
n
16
VAL
16
A
LYS
17
n
17
LYS
17
A
ASP
18
n
18
ASP
18
A
ALA
19
n
19
ALA
19
A
LEU
20
n
20
LEU
20
A
VAL
21
n
21
VAL
21
A
GLU
22
n
22
GLU
22
A
ILE
23
n
23
ILE
23
A
GLY
24
n
24
GLY
24
A
ILE
25
n
25
ILE
25
A
GLY
26
n
26
GLY
26
A
GLY
27
n
27
GLY
27
A
MET
28
n
28
MET
28
A
THR
29
n
29
THR
29
A
VAL
30
n
30
VAL
30
A
THR
31
n
31
THR
31
A
GLU
32
n
32
GLU
32
A
VAL
33
n
33
VAL
33
A
LYS
34
n
34
LYS
34
A
GLY
35
n
35
GLY
35
A
PHE
36
n
36
PHE
36
A
n
37
37
A
n
38
38
A
n
39
39
A
n
40
40
A
n
41
41
A
n
42
42
A
n
43
43
A
n
44
44
A
n
45
45
A
n
46
46
A
n
47
47
A
n
48
48
A
n
49
49
A
n
50
50
A
n
51
51
A
n
52
52
A
n
53
53
A
ASP
54
n
54
ASP
54
A
PHE
55
n
55
PHE
55
A
LEU
56
n
56
LEU
56
A
PRO
57
n
57
PRO
57
A
LYS
58
n
58
LYS
58
A
VAL
59
n
59
VAL
59
A
LYS
60
n
60
LYS
60
A
ILE
61
n
61
ILE
61
A
GLU
62
n
62
GLU
62
A
VAL
63
n
63
VAL
63
A
VAL
64
n
64
VAL
64
A
VAL
65
n
65
VAL
65
A
ARG
66
n
66
ARG
66
A
ASP
67
n
67
ASP
67
A
GLU
68
n
68
GLU
68
A
ASP
69
n
69
ASP
69
A
VAL
70
n
70
VAL
70
A
GLU
71
n
71
GLU
71
A
LYS
72
n
72
LYS
72
A
VAL
73
n
73
VAL
73
A
VAL
74
n
74
VAL
74
A
GLU
75
n
75
GLU
75
A
THR
76
n
76
THR
76
A
ILE
77
n
77
ILE
77
A
VAL
78
n
78
VAL
78
A
LYS
79
n
79
LYS
79
A
THR
80
n
80
THR
80
A
ALA
81
n
81
ALA
81
A
GLN
82
n
82
GLN
82
A
THR
83
n
83
THR
83
A
GLY
84
n
84
GLY
84
A
ARG
85
n
85
ARG
85
A
VAL
86
n
86
VAL
86
A
GLY
87
n
87
GLY
87
A
ASP
88
n
88
ASP
88
A
GLY
89
n
89
GLY
89
A
LYS
90
n
90
LYS
90
A
ILE
91
n
91
ILE
91
A
PHE
92
n
92
PHE
92
A
ILE
93
n
93
ILE
93
A
ILE
94
n
94
ILE
94
A
PRO
95
n
95
PRO
95
A
VAL
96
n
96
VAL
96
A
GLU
97
n
97
GLU
97
A
ASP
98
n
98
ASP
98
A
VAL
99
n
99
VAL
99
A
ILE
100
n
100
ILE
100
A
ARG
101
n
101
ARG
101
A
ILE
102
n
102
ILE
102
A
ARG
103
n
103
ARG
103
A
THR
104
n
104
THR
104
A
GLY
105
n
105
GLY
105
A
GLU
106
n
106
GLU
106
A
ARG
107
n
107
ARG
107
A
GLY
108
n
108
GLY
108
A
GLU
109
n
109
GLU
109
A
GLN
110
n
110
GLN
110
A
ALA
111
n
111
ALA
111
A
ILE
112
n
112
ILE
112
A
author_and_software_defined_assembly
PISA
3
trimeric
software_defined_assembly
PQS
12
dodecameric
9730
-31
11400
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
5_555
z,x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1.0000000000
0.0000000000
0.0000000000
9_555
y,z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_555
-x,-y,z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_555
-x,y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_555
x,-y,-z
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
6_555
z,-x,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
7_555
-z,-x,y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
8_555
-z,x,-y
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
-1.0000000000
0.0000000000
0.0000000000
10_555
-y,z,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
-1.0000000000
0.0000000000
0.0000000000
11_555
y,-z,-x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
1.0000000000
0.0000000000
0.0000000000
12_555
-y,-z,x
crystal symmetry operation
0.0000000000
0.0000000000
0.0000000000
A
N
THR
31
A
N
THR
31
A
O
LYS
60
A
O
LYS
60
A
O
VAL
63
A
O
VAL
63
A
N
ILE
4
A
N
ILE
4
A
N
LYS
3
A
N
LYS
3
A
O
ILE
94
A
O
ILE
94
1
A
CL
601
B
CL
1
A
HOH
603
D
HOH
1
A
HOH
658
D
HOH
1
A
HOH
659
D
HOH
1
A
GLY
37
A
GLY
37
1
Y
1
A
GLN
38
A
GLN
38
1
Y
1
A
GLN
39
A
GLN
39
1
Y
1
A
LYS
40
A
LYS
40
1
Y
1
A
GLY
41
A
GLY
41
1
Y
1
A
HIS
42
A
HIS
42
1
Y
1
A
THR
43
A
THR
43
1
Y
1
A
GLU
44
A
GLU
44
1
Y
1
A
ILE
45
A
ILE
45
1
Y
1
A
TYR
46
A
TYR
46
1
Y
1
A
ARG
47
A
ARG
47
1
Y
1
A
GLY
48
A
GLY
48
1
Y
1
A
THR
49
A
THR
49
1
Y
1
A
GLU
50
A
GLU
50
1
Y
1
A
TYR
51
A
TYR
51
1
Y
1
A
VAL
52
A
VAL
52
1
Y
1
A
ILE
53
A
ILE
53
1
Y
1
A
A
NH1
O1B
ARG
ATP
101
501
2.19
1_555
5_555
protein_rep.param
protein.top
ion.param
ion.top
water_rep.param
water.top
ATP.PAR
ATP.TOP
23.4
0.00
0.00
0.00
0.00
0.00
0.00
0.228
0.010
0.194
0.194
1.72
33.46
522
9862
5.3
99.6
RANDOM
312811.44
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MOLECULAR REPLACEMENT
PDB ENTRY 2EG1
Engh & Huber
FLAT MODEL
50.8403
0.366167
0.23
0.18
5.00
0.13
0.08
1.72
33.46
89
861
32
0
740
0.011
1.7
26.0
0.90
1.98
1.50
2.94
2.00
3.42
2.00
4.93
2.50
0.26
0.029
0.206
1.83
82
1517
6
5.1
98.9
18.2
1.72
100
2EG2
9892
0
-3
0.1
0.1
1
29.7
14.7
99.9
0.292
1.72
1.78
8.77
976
0.292
1
14.4
100
refinement
CNS
1.1
data reduction
HKL-2000
data scaling
HKL-2000
phasing
MOLREP
The crystal structure of PII protein
1
N
N
2
N
N
3
N
N
4
N
N
A
LYS
9
A
LYS
9
HELX_P
A
PHE
11
A
PHE
11
5
1
3
A
LYS
12
A
LYS
12
HELX_P
A
ILE
23
A
ILE
23
1
2
12
A
ARG
66
A
ARG
66
HELX_P
A
GLU
68
A
GLU
68
5
3
3
A
ASP
69
A
ASP
69
HELX_P
A
GLN
82
A
GLN
82
1
4
14
A
ARG
107
A
ARG
107
HELX_P
A
ALA
111
A
ALA
111
5
5
5
SIGNALING PROTEIN
Nitrogen regulatory protein, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN
GLNB_AQUAE
UNP
1
1
O66513
MKKIEAIIKPFKLDEVKDALVEIGIGGMTVTEVKGFGQQKGHTEIYRGTEYVIDFLPKVKIEVVVRDEDVEKVVETIVKT
AQTGRVGDGKIFIIPVEDVIRIRTGERGEQAI
1
112
2EG2
1
112
O66513
A
1
1
112
4
anti-parallel
anti-parallel
anti-parallel
A
THR
29
A
THR
29
A
GLY
35
A
GLY
35
A
LEU
56
A
LEU
56
A
VAL
65
A
VAL
65
A
LYS
2
A
LYS
2
A
ILE
8
A
ILE
8
A
LYS
90
A
LYS
90
A
PRO
95
A
PRO
95
BINDING SITE FOR RESIDUE CL A 601
A
CL
601
Software
1
BINDING SITE FOR RESIDUE ATP A 501
A
ATP
501
Software
18
A
LYS
3
A
LYS
3
1
1_555
A
ILE
7
A
ILE
7
18
1_555
A
GLY
27
A
GLY
27
18
9_555
A
MET
28
A
MET
28
18
9_555
A
THR
29
A
THR
29
18
9_555
A
GLY
35
A
GLY
35
18
1_555
A
PHE
36
A
PHE
36
18
1_555
A
LYS
58
A
LYS
58
18
1_555
A
GLU
62
A
GLU
62
18
9_555
A
GLY
87
A
GLY
87
18
1_555
A
ASP
88
A
ASP
88
18
1_555
A
GLY
89
A
GLY
89
18
1_555
A
LYS
90
A
LYS
90
18
1_555
A
ARG
101
A
ARG
101
18
9_555
A
ARG
103
A
ARG
103
18
9_555
A
HOH
604
D
HOH
18
1_555
A
HOH
632
D
HOH
18
1_555
A
HOH
634
D
HOH
18
1_555
A
HOH
654
D
HOH
18
1_555
197
I 2 3