1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Inoue, K. Kurosaki, C. Yoshida, M. Hayashi, F. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the fifth SH3 domain from human KIAA0418 protein 10.2210/pdb2egc/pdb pdb_00002egc 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 8155.835 SH3 and PX domain-containing protein 2A SH3 domain 1 man polymer SH3 multiple domains protein 1, Five SH3 domain-containing protein, Adaptor protein TKS5, KIAA0418 protein no no GSSGSSGNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSSG GSSGSSGNLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKNSGPSSG A hsk002100407.4 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo sample Cell-free protein synthesis SH3PXD2A, FISH, KIAA0418, SH3MD1 9606 Homo sapiens PLASMID P050919-09 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-08-28 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details SHEET DETERMINATION METHOD: AUTHOR DETERMINED Y PDBJ Y PDBJ 2007-02-28 REL structures with the least restraint violations,structures with the lowest energy,target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dynamics 1 lowest energy 1.18mM U-15N,13C-labeled protein; 20mM d-Tris-HCl; 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O JEOL collection Delta NMR 4.3.2 Delaglio, F. processing NMRPipe 20060324 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9807 Guntert, P. structure solution CYANA 2.1 Guntert, P. refinement CYANA 2.1 800 JEOL ECA GLY 1 n 1 GLY 1 A SER 2 n 2 SER 2 A SER 3 n 3 SER 3 A GLY 4 n 4 GLY 4 A SER 5 n 5 SER 5 A SER 6 n 6 SER 6 A GLY 7 n 7 GLY 7 A ASN 8 n 8 ASN 8 A LEU 9 n 9 LEU 9 A LYS 10 n 10 LYS 10 A ASP 11 n 11 ASP 11 A VAL 12 n 12 VAL 12 A TYR 13 n 13 TYR 13 A VAL 14 n 14 VAL 14 A SER 15 n 15 SER 15 A ILE 16 n 16 ILE 16 A ALA 17 n 17 ALA 17 A ASP 18 n 18 ASP 18 A TYR 19 n 19 TYR 19 A GLU 20 n 20 GLU 20 A GLY 21 n 21 GLY 21 A ASP 22 n 22 ASP 22 A GLU 23 n 23 GLU 23 A GLU 24 n 24 GLU 24 A THR 25 n 25 THR 25 A ALA 26 n 26 ALA 26 A GLY 27 n 27 GLY 27 A PHE 28 n 28 PHE 28 A GLN 29 n 29 GLN 29 A GLU 30 n 30 GLU 30 A GLY 31 n 31 GLY 31 A VAL 32 n 32 VAL 32 A SER 33 n 33 SER 33 A MET 34 n 34 MET 34 A GLU 35 n 35 GLU 35 A VAL 36 n 36 VAL 36 A LEU 37 n 37 LEU 37 A GLU 38 n 38 GLU 38 A ARG 39 n 39 ARG 39 A ASN 40 n 40 ASN 40 A PRO 41 n 41 PRO 41 A ASN 42 n 42 ASN 42 A GLY 43 n 43 GLY 43 A TRP 44 n 44 TRP 44 A TRP 45 n 45 TRP 45 A TYR 46 n 46 TYR 46 A CYS 47 n 47 CYS 47 A GLN 48 n 48 GLN 48 A ILE 49 n 49 ILE 49 A LEU 50 n 50 LEU 50 A ASP 51 n 51 ASP 51 A GLY 52 n 52 GLY 52 A VAL 53 n 53 VAL 53 A LYS 54 n 54 LYS 54 A PRO 55 n 55 PRO 55 A PHE 56 n 56 PHE 56 A LYS 57 n 57 LYS 57 A GLY 58 n 58 GLY 58 A TRP 59 n 59 TRP 59 A VAL 60 n 60 VAL 60 A PRO 61 n 61 PRO 61 A SER 62 n 62 SER 62 A ASN 63 n 63 ASN 63 A TYR 64 n 64 TYR 64 A LEU 65 n 65 LEU 65 A GLU 66 n 66 GLU 66 A LYS 67 n 67 LYS 67 A LYS 68 n 68 LYS 68 A ASN 69 n 69 ASN 69 A SER 70 n 70 SER 70 A GLY 71 n 71 GLY 71 A PRO 72 n 72 PRO 72 A SER 73 n 73 SER 73 A SER 74 n 74 SER 74 A GLY 75 n 75 GLY 75 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N VAL 36 A N VAL 36 A O ASP 11 A O ASP 11 A N VAL 14 A N VAL 14 A O GLU 66 A O GLU 66 A N GLU 38 A N GLU 38 A O TYR 46 A O TYR 46 A N TRP 45 A N TRP 45 A O VAL 60 A O VAL 60 1 A SER 3 -87.58 -72.88 1 A ALA 17 -177.55 143.37 1 A ASP 22 -66.19 -176.47 1 A LEU 50 -98.67 42.93 1 A LYS 54 -164.26 69.92 2 A SER 5 -122.26 -58.67 2 A ALA 17 -178.06 146.40 2 A LEU 50 -98.37 42.91 2 A LYS 54 -155.22 70.16 3 A LYS 10 -174.85 107.86 3 A ALA 17 -177.98 137.43 3 A LEU 50 -104.99 41.06 3 A LYS 54 -164.40 73.68 3 A ASN 69 -55.79 104.25 3 A PRO 72 -69.71 84.97 4 A ASP 11 -100.81 54.40 4 A ALA 17 -178.16 147.97 4 A LEU 50 -98.31 42.99 4 A LYS 54 -152.49 68.30 4 A TYR 64 -95.82 33.74 4 A PRO 72 -69.76 -176.35 5 A ASN 8 -124.98 -71.94 5 A ALA 17 -177.23 142.77 5 A LEU 50 -100.00 42.93 5 A LYS 54 -170.32 68.28 5 A TYR 64 -95.79 33.88 6 A SER 2 -128.09 -61.70 6 A ALA 17 -177.44 148.90 6 A LEU 50 -99.30 43.01 6 A LYS 54 -161.64 71.56 6 A TYR 64 -95.85 33.93 7 A ASP 11 -91.47 56.39 7 A ALA 17 -176.84 148.77 7 A ASP 22 -65.85 -176.35 7 A LEU 50 -99.36 43.21 7 A LYS 54 -166.66 72.23 7 A TYR 64 -95.78 33.76 7 A SER 70 -110.53 68.92 7 A PRO 72 -69.75 -178.73 8 A ASP 11 -98.15 51.26 8 A ALA 17 -177.25 147.57 8 A LEU 50 -99.67 43.07 8 A LYS 54 -167.15 72.32 8 A TYR 64 -95.77 33.71 9 A SER 5 -130.75 -69.46 9 A ALA 17 -176.77 149.83 9 A ASP 22 -59.86 178.94 9 A LEU 50 -98.58 42.61 9 A LYS 54 -167.36 68.31 9 A TYR 64 -95.82 34.23 10 A SER 2 -94.36 -68.68 10 A ASP 22 -58.90 178.07 10 A LEU 50 -100.04 42.47 10 A LYS 54 -166.61 72.37 10 A TYR 64 -95.77 34.01 10 A LYS 67 -59.44 108.09 11 A ALA 17 -177.20 147.75 11 A ASP 22 -63.84 -177.06 11 A LEU 50 -99.06 43.27 11 A LYS 54 -167.35 72.10 11 A TYR 64 -95.78 33.76 11 A LYS 67 -56.80 108.23 11 A SER 74 -95.93 48.47 12 A ALA 17 -177.04 149.99 12 A LEU 50 -99.19 42.95 12 A LYS 54 -167.13 72.43 12 A TYR 64 -95.75 33.80 13 A LEU 9 -58.62 177.18 13 A LYS 10 63.50 105.94 13 A LEU 50 -101.14 42.79 13 A LYS 54 -160.53 72.31 14 A ASP 11 -117.27 60.26 14 A ALA 17 -177.03 147.46 14 A ASP 22 -126.95 -74.92 14 A GLU 23 -136.04 -49.14 14 A LEU 50 -98.72 42.93 14 A LYS 54 -165.20 69.42 14 A PRO 72 -69.68 -171.13 14 A SER 73 -129.50 -56.07 15 A ALA 17 -176.64 146.02 15 A ASP 22 -62.28 -177.48 15 A LEU 50 -100.42 42.82 15 A LYS 54 -159.23 68.27 15 A TYR 64 -96.07 30.78 16 A SER 6 -55.88 175.84 16 A LEU 9 52.97 86.09 16 A LEU 50 -101.42 42.16 16 A LYS 54 -161.62 72.53 16 A TYR 64 -95.78 33.81 17 A LEU 50 -98.77 43.14 17 A TYR 64 -95.72 33.73 18 A ALA 17 -177.45 145.32 18 A ASP 22 -122.30 -74.96 18 A GLU 23 -132.91 -74.46 18 A LEU 50 -103.25 42.18 18 A LYS 54 -171.35 68.31 18 A TYR 64 -95.91 32.50 19 A ASP 11 -108.71 52.71 19 A ASP 22 -66.49 -179.58 19 A LEU 50 -98.88 41.96 19 A LYS 54 -152.62 68.27 19 A TYR 64 -95.80 33.86 20 A ASP 22 -61.13 -174.84 20 A LEU 50 -102.95 41.47 20 A LYS 54 -161.50 68.51 20 A TYR 64 -95.70 34.20 Solution structure of the fifth SH3 domain from human KIAA0418 protein 1 N N SIGNALING PROTEIN SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, SIGNALING PROTEIN SPD2A_HUMAN UNP 1 1072 Q5TCZ1 NLKDVYVSIADYEGDEETAGFQEGVSMEVLERNPNGWWYCQILDGVKPFKGWVPSNYLEKKN 1072 1133 2EGC 8 69 Q5TCZ1 A 1 8 69 1 expression tag GLY 1 2EGC A Q5TCZ1 UNP 1 1 expression tag SER 2 2EGC A Q5TCZ1 UNP 2 1 expression tag SER 3 2EGC A Q5TCZ1 UNP 3 1 expression tag GLY 4 2EGC A Q5TCZ1 UNP 4 1 expression tag SER 5 2EGC A Q5TCZ1 UNP 5 1 expression tag SER 6 2EGC A Q5TCZ1 UNP 6 1 expression tag GLY 7 2EGC A Q5TCZ1 UNP 7 1 expression tag SER 70 2EGC A Q5TCZ1 UNP 70 1 expression tag GLY 71 2EGC A Q5TCZ1 UNP 71 1 expression tag PRO 72 2EGC A Q5TCZ1 UNP 72 1 expression tag SER 73 2EGC A Q5TCZ1 UNP 73 1 expression tag SER 74 2EGC A Q5TCZ1 UNP 74 1 expression tag GLY 75 2EGC A Q5TCZ1 UNP 75 3 3 anti-parallel anti-parallel anti-parallel anti-parallel A SER 33 A SER 33 A VAL 36 A VAL 36 A ASP 11 A ASP 11 A SER 15 A SER 15 A LEU 65 A LEU 65 A LYS 67 A LYS 67 A GLU 38 A GLU 38 A ARG 39 A ARG 39 A TRP 44 A TRP 44 A ILE 49 A ILE 49 A PHE 56 A PHE 56 A PRO 61 A PRO 61