0.014443
0.000000
0.000000
0.000000
0.013742
0.000000
0.000000
0.000000
0.014612
0.00000
0.00000
0.00000
Rehse, P.H.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
16
90.000
90.000
90.000
69.237
72.772
68.438
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
ZN
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
To be Published
0353
Stage V Sporolation Protein S (SPOVS) from Thermus thermophilus Zinc form
10.2210/pdb2ek0/pdb
pdb_00002ek0
100
1
mirrors
CCD
2006-04-13
ADSC QUANTUM 210
Si 111
SINGLE WAVELENGTH
M
x-ray
1
1.00000
1.0
BL26B1
SPring-8
1.00000
SYNCHROTRON
SPRING-8 BEAMLINE BL26B1
9695.244
Stage V sporulation protein S (SpoVS) related protein
K22M
2
man
polymer
65.409
ZINC ION
3
syn
non-polymer
18.015
water
70
nat
water
no
no
METLRVSSKSRPNSVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALK
FSIKAHPLET
METLRVSSKSRPNSVAGAIAAMLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALK
FSIKAHPLET
A,B
ttk003001283.3
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermus
Escherichia
Escherichia coli
sample
HB8
274
Thermus thermophilus
469008
Escherichia coli BL21(DE3)
BL21 (DE3)
plasmid
pET-11a
1
2.22
44.64
VAPOR DIFFUSION, HANGING DROP
7.3
100mM Na cacodylate, 0.2M Zn Acetate, 35% PEG 200 , pH 7.3, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Derived calculations
Version format compliance
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2007-09-25
1
1
2011-07-13
1
2
2017-10-11
1
3
2021-11-10
1
4
2023-10-25
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_symmetry
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2007-03-22
REL
REL
ZN
ZINC ION
HOH
water
2EH1
PDB
experimental model
ZN2
2
2
ZN
ZN
102
A
ZN2
1
2
ZN
ZN
101
B
ZN2
3
2
ZN
ZN
103
B
HOH
1
3
HOH
HOH
103
A
HOH
3
3
HOH
HOH
104
A
HOH
6
3
HOH
HOH
105
A
HOH
8
3
HOH
HOH
106
A
HOH
9
3
HOH
HOH
107
A
HOH
10
3
HOH
HOH
108
A
HOH
11
3
HOH
HOH
109
A
HOH
12
3
HOH
HOH
110
A
HOH
13
3
HOH
HOH
111
A
HOH
15
3
HOH
HOH
112
A
HOH
16
3
HOH
HOH
113
A
HOH
17
3
HOH
HOH
114
A
HOH
18
3
HOH
HOH
115
A
HOH
19
3
HOH
HOH
116
A
HOH
22
3
HOH
HOH
117
A
HOH
23
3
HOH
HOH
118
A
HOH
24
3
HOH
HOH
119
A
HOH
26
3
HOH
HOH
120
A
HOH
27
3
HOH
HOH
121
A
HOH
28
3
HOH
HOH
122
A
HOH
30
3
HOH
HOH
123
A
HOH
37
3
HOH
HOH
124
A
HOH
41
3
HOH
HOH
125
A
HOH
44
3
HOH
HOH
126
A
HOH
47
3
HOH
HOH
127
A
HOH
48
3
HOH
HOH
128
A
HOH
49
3
HOH
HOH
129
A
HOH
51
3
HOH
HOH
130
A
HOH
54
3
HOH
HOH
131
A
HOH
56
3
HOH
HOH
132
A
HOH
59
3
HOH
HOH
133
A
HOH
62
3
HOH
HOH
134
A
HOH
63
3
HOH
HOH
135
A
HOH
64
3
HOH
HOH
136
A
HOH
66
3
HOH
HOH
137
A
HOH
67
3
HOH
HOH
138
A
HOH
68
3
HOH
HOH
139
A
HOH
69
3
HOH
HOH
140
A
HOH
70
3
HOH
HOH
141
A
HOH
2
3
HOH
HOH
104
B
HOH
4
3
HOH
HOH
105
B
HOH
5
3
HOH
HOH
106
B
HOH
7
3
HOH
HOH
107
B
HOH
14
3
HOH
HOH
108
B
HOH
20
3
HOH
HOH
109
B
HOH
21
3
HOH
HOH
110
B
HOH
25
3
HOH
HOH
111
B
HOH
29
3
HOH
HOH
112
B
HOH
31
3
HOH
HOH
113
B
HOH
32
3
HOH
HOH
114
B
HOH
33
3
HOH
HOH
115
B
HOH
34
3
HOH
HOH
116
B
HOH
35
3
HOH
HOH
117
B
HOH
36
3
HOH
HOH
118
B
HOH
38
3
HOH
HOH
119
B
HOH
39
3
HOH
HOH
120
B
HOH
40
3
HOH
HOH
121
B
HOH
42
3
HOH
HOH
122
B
HOH
43
3
HOH
HOH
123
B
HOH
45
3
HOH
HOH
124
B
HOH
46
3
HOH
HOH
125
B
HOH
50
3
HOH
HOH
126
B
HOH
52
3
HOH
HOH
127
B
HOH
53
3
HOH
HOH
128
B
HOH
55
3
HOH
HOH
129
B
HOH
57
3
HOH
HOH
130
B
HOH
58
3
HOH
HOH
131
B
HOH
60
3
HOH
HOH
132
B
HOH
61
3
HOH
HOH
133
B
HOH
65
3
HOH
HOH
134
B
0.448
0.574
3.000
3.000
40.460
40.460
MET
1
n
1
MET
1
A
GLU
2
n
2
GLU
2
A
THR
3
n
3
THR
3
A
LEU
4
n
4
LEU
4
A
ARG
5
n
5
ARG
5
A
VAL
6
n
6
VAL
6
A
SER
7
n
7
SER
7
A
SER
8
n
8
SER
8
A
LYS
9
n
9
LYS
9
A
SER
10
n
10
SER
10
A
ARG
11
n
11
ARG
11
A
PRO
12
n
12
PRO
12
A
ASN
13
n
13
ASN
13
A
SER
14
n
14
SER
14
A
VAL
15
n
15
VAL
15
A
ALA
16
n
16
ALA
16
A
GLY
17
n
17
GLY
17
A
ALA
18
n
18
ALA
18
A
ILE
19
n
19
ILE
19
A
ALA
20
n
20
ALA
20
A
ALA
21
n
21
ALA
21
A
MET
22
n
22
MET
22
A
LEU
23
n
23
LEU
23
A
ARG
24
n
24
ARG
24
A
THR
25
n
25
THR
25
A
LYS
26
n
26
LYS
26
A
GLY
27
n
27
GLY
27
A
GLU
28
n
28
GLU
28
A
VAL
29
n
29
VAL
29
A
GLU
30
n
30
GLU
30
A
VAL
31
n
31
VAL
31
A
GLN
32
n
32
GLN
32
A
ALA
33
n
33
ALA
33
A
ILE
34
n
34
ILE
34
A
GLY
35
n
35
GLY
35
A
PRO
36
n
36
PRO
36
A
GLN
37
n
37
GLN
37
A
ALA
38
n
38
ALA
38
A
VAL
39
n
39
VAL
39
A
ASN
40
n
40
ASN
40
A
GLN
41
n
41
GLN
41
A
ALA
42
n
42
ALA
42
A
VAL
43
n
43
VAL
43
A
LYS
44
n
44
LYS
44
A
ALA
45
n
45
ALA
45
A
ILE
46
n
46
ILE
46
A
ALA
47
n
47
ALA
47
A
ILE
48
n
48
ILE
48
A
ALA
49
n
49
ALA
49
A
ARG
50
n
50
ARG
50
A
GLY
51
n
51
GLY
51
A
TYR
52
n
52
TYR
52
A
ILE
53
n
53
ILE
53
A
ALA
54
n
54
ALA
54
A
PRO
55
n
55
PRO
55
A
ASP
56
n
56
ASP
56
A
ASN
57
n
57
ASN
57
A
LEU
58
n
58
LEU
58
A
ASP
59
n
59
ASP
59
A
LEU
60
n
60
LEU
60
A
VAL
61
n
61
VAL
61
A
VAL
62
n
62
VAL
62
A
LYS
63
n
63
LYS
63
A
PRO
64
n
64
PRO
64
A
ALA
65
n
65
ALA
65
A
PHE
66
n
66
PHE
66
A
VAL
67
n
67
VAL
67
A
LYS
68
n
68
LYS
68
A
LEU
69
n
69
LEU
69
A
GLU
70
n
70
GLU
70
A
LEU
71
n
71
LEU
71
A
GLU
72
n
72
GLU
72
A
ASN
73
n
73
ASN
73
A
GLU
74
n
74
GLU
74
A
GLU
75
n
75
GLU
75
A
ARG
76
n
76
ARG
76
A
THR
77
n
77
THR
77
A
ALA
78
n
78
ALA
78
A
LEU
79
n
79
LEU
79
A
LYS
80
n
80
LYS
80
A
PHE
81
n
81
PHE
81
A
SER
82
n
82
SER
82
A
ILE
83
n
83
ILE
83
A
LYS
84
n
84
LYS
84
A
ALA
85
n
85
ALA
85
A
HIS
86
n
86
HIS
86
A
PRO
87
n
87
PRO
87
A
LEU
88
n
88
LEU
88
A
GLU
89
n
89
GLU
89
A
THR
90
n
90
THR
90
A
MET
1
n
1
MET
1
B
GLU
2
n
2
GLU
2
B
THR
3
n
3
THR
3
B
LEU
4
n
4
LEU
4
B
ARG
5
n
5
ARG
5
B
VAL
6
n
6
VAL
6
B
SER
7
n
7
SER
7
B
SER
8
n
8
SER
8
B
LYS
9
n
9
LYS
9
B
SER
10
n
10
SER
10
B
ARG
11
n
11
ARG
11
B
PRO
12
n
12
PRO
12
B
ASN
13
n
13
ASN
13
B
SER
14
n
14
SER
14
B
VAL
15
n
15
VAL
15
B
ALA
16
n
16
ALA
16
B
GLY
17
n
17
GLY
17
B
ALA
18
n
18
ALA
18
B
ILE
19
n
19
ILE
19
B
ALA
20
n
20
ALA
20
B
ALA
21
n
21
ALA
21
B
MET
22
n
22
MET
22
B
LEU
23
n
23
LEU
23
B
ARG
24
n
24
ARG
24
B
THR
25
n
25
THR
25
B
LYS
26
n
26
LYS
26
B
GLY
27
n
27
GLY
27
B
GLU
28
n
28
GLU
28
B
VAL
29
n
29
VAL
29
B
GLU
30
n
30
GLU
30
B
VAL
31
n
31
VAL
31
B
GLN
32
n
32
GLN
32
B
ALA
33
n
33
ALA
33
B
ILE
34
n
34
ILE
34
B
GLY
35
n
35
GLY
35
B
PRO
36
n
36
PRO
36
B
GLN
37
n
37
GLN
37
B
ALA
38
n
38
ALA
38
B
VAL
39
n
39
VAL
39
B
ASN
40
n
40
ASN
40
B
GLN
41
n
41
GLN
41
B
ALA
42
n
42
ALA
42
B
VAL
43
n
43
VAL
43
B
LYS
44
n
44
LYS
44
B
ALA
45
n
45
ALA
45
B
ILE
46
n
46
ILE
46
B
ALA
47
n
47
ALA
47
B
ILE
48
n
48
ILE
48
B
ALA
49
n
49
ALA
49
B
ARG
50
n
50
ARG
50
B
GLY
51
n
51
GLY
51
B
TYR
52
n
52
TYR
52
B
ILE
53
n
53
ILE
53
B
ALA
54
n
54
ALA
54
B
PRO
55
n
55
PRO
55
B
ASP
56
n
56
ASP
56
B
ASN
57
n
57
ASN
57
B
LEU
58
n
58
LEU
58
B
ASP
59
n
59
ASP
59
B
LEU
60
n
60
LEU
60
B
VAL
61
n
61
VAL
61
B
VAL
62
n
62
VAL
62
B
LYS
63
n
63
LYS
63
B
PRO
64
n
64
PRO
64
B
ALA
65
n
65
ALA
65
B
PHE
66
n
66
PHE
66
B
VAL
67
n
67
VAL
67
B
LYS
68
n
68
LYS
68
B
LEU
69
n
69
LEU
69
B
GLU
70
n
70
GLU
70
B
LEU
71
n
71
LEU
71
B
GLU
72
n
72
GLU
72
B
ASN
73
n
73
ASN
73
B
GLU
74
n
74
GLU
74
B
GLU
75
n
75
GLU
75
B
ARG
76
n
76
ARG
76
B
THR
77
n
77
THR
77
B
ALA
78
n
78
ALA
78
B
LEU
79
n
79
LEU
79
B
LYS
80
n
80
LYS
80
B
PHE
81
n
81
PHE
81
B
SER
82
n
82
SER
82
B
ILE
83
n
83
ILE
83
B
LYS
84
n
84
LYS
84
B
ALA
85
n
85
ALA
85
B
HIS
86
n
86
HIS
86
B
PRO
87
n
87
PRO
87
B
LEU
88
n
88
LEU
88
B
GLU
89
n
89
GLU
89
B
THR
90
n
90
THR
90
B
author_and_software_defined_assembly
PISA,PQS
2
dimeric
software_defined_assembly
PISA
4
tetrameric
1960
-57
9310
3110
-193
19520
A
GLU
30
A
OE1
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
A
GLU
30
A
OE2
GLU
30
6_555
53.2
A
GLU
30
A
OE1
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
A
LYS
80
A
NZ
LYS
80
6_555
80.1
A
GLU
30
A
OE2
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
A
LYS
80
A
NZ
LYS
80
6_555
133.2
A
GLU
30
A
OE1
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
112.0
A
GLU
30
A
OE2
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
76.2
A
LYS
80
A
NZ
LYS
80
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE2
GLU
74
1_555
126.3
A
GLU
30
A
OE1
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
155.9
A
GLU
30
A
OE2
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
127.4
A
LYS
80
A
NZ
LYS
80
6_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
93.4
B
GLU
74
B
OE2
GLU
74
1_555
B
ZN
101
D
ZN
ZN
1_555
B
GLU
74
B
OE1
GLU
74
1_555
53.9
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
A
GLU
74
A
OE2
GLU
74
1_555
86.2
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
A
GLU
74
A
OE1
GLU
74
1_555
87.2
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
A
GLU
74
A
OE1
GLU
74
1_555
58.2
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE1
GLU
30
8_455
88.6
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE1
GLU
30
8_455
117.4
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE1
GLU
30
8_455
174.1
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE2
GLU
30
8_455
103.4
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE2
GLU
30
8_455
64.9
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE2
GLU
30
8_455
121.1
B
GLU
30
B
OE1
GLU
30
8_455
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE2
GLU
30
8_455
56.0
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
140.6
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
124.7
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
89.8
B
GLU
30
B
OE1
GLU
30
8_455
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
96.0
B
GLU
30
B
OE2
GLU
30
8_455
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
111.5
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
A
GLU
75
A
OE1
GLU
75
6_555
174.7
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
75
1_555
89.6
A
GLU
75
A
OE1
GLU
75
6_555
B
ZN
103
E
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
75
1_555
89.7
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
75
3_655
89.8
A
GLU
75
A
OE1
GLU
75
6_555
B
ZN
103
E
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
75
3_655
89.9
B
GLU
75
B
OE1
GLU
75
1_555
B
ZN
103
E
ZN
ZN
1_555
B
GLU
75
B
OE1
GLU
75
3_655
169.0
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
1_555
107.1
A
GLU
75
A
OE1
GLU
75
6_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
1_555
77.7
B
GLU
75
B
OE1
GLU
75
1_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
1_555
70.4
B
GLU
75
B
OE1
GLU
75
3_655
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
1_555
120.2
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
77.6
A
GLU
75
A
OE1
GLU
75
6_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
107.2
B
GLU
75
B
OE1
GLU
75
1_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
120.0
B
GLU
75
B
OE1
GLU
75
3_655
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
70.5
B
HOH
110
G
O
HOH
1_555
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
58.8
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_655
-x+1,y,-z+1/2
crystal symmetry operation
69.2370000000
0.0000000000
34.2190000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
6_555
-x+1/2,-y+1/2,z+1/2
crystal symmetry operation
34.6185000000
36.3860000000
34.2190000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
8_555
x+1/2,-y+1/2,-z
crystal symmetry operation
34.6185000000
36.3860000000
0.0000000000
A
N
LEU
4
A
N
LEU
4
A
O
GLU
30
A
O
GLU
30
A
N
VAL
31
A
N
VAL
31
A
O
PHE
81
A
O
PHE
81
A
O
ARG
76
A
O
ARG
76
A
N
LEU
69
A
N
LEU
69
B
N
LEU
4
B
N
LEU
4
B
O
GLN
32
B
O
GLN
32
B
N
VAL
29
B
N
VAL
29
B
O
ILE
83
B
O
ILE
83
B
O
ARG
76
B
O
ARG
76
B
N
LEU
69
B
N
LEU
69
1
B
ZN
103
E
ZN
1
B
HOH
104
G
HOH
1
B
HOH
107
G
HOH
1
B
HOH
109
G
HOH
1
A
CE
LYS
26
A
CE
LYS
26
1
Y
1
A
NZ
LYS
26
A
NZ
LYS
26
1
Y
1
A
CE
LYS
68
A
CE
LYS
68
1
Y
1
A
NZ
LYS
68
A
NZ
LYS
68
1
Y
1
B
CE
LYS
26
B
CE
LYS
26
1
Y
1
B
NZ
LYS
26
B
NZ
LYS
26
1
Y
1
B
CG
LYS
84
B
CG
LYS
84
1
Y
1
B
CD
LYS
84
B
CD
LYS
84
1
Y
1
B
CE
LYS
84
B
CE
LYS
84
1
Y
1
B
NZ
LYS
84
B
NZ
LYS
84
1
Y
1
A
A
O
O
HOH
HOH
138
139
1.99
1
A
A
O
O
HOH
HOH
135
137
2.14
1
A
A
OE2
O
GLU
HOH
70
115
2.15
1
B
B
OE2
O
GLU
HOH
75
110
2.19
1
A
B
OE2
O
GLU
HOH
89
134
2.14
1_555
3_654
1
A
ASN
73
52.48
11.99
1
B
ASP
56
-74.31
24.26
1
B
GLU
72
56.59
-121.60
1
B
LEU
88
-32.15
164.09
protein_rep.param
water_rep.param
ion.param
36.964
2.239
0.000
0.000
-0.862
0.000
-1.377
0.255
0.229
0.229
1.900
40.460
682
13973
13512
4.900
96.700
random
1
anisotropic
THROUGHOUT
0.00
0.0
MOLECULAR REPLACEMENT
2EH1
Engh & Huber
94.256
0.25
0.22
5.0
0.19
0.13
1.900
40.460
70
1421
3
0
1348
0.009718
1.500
1.63907
2.000
24.53473
2.000
1.00900
2.500
0.2612
0.2406
1.97
49
1215
87.67
1.860
40.500
2EK0
14849
14671
0.0
0.0
0.066
1.000
1
23.500
6.400
98.800
0.494
1.86
1.93
2.49
1357
1.000
1
3.20
92.60
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran_77
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
other
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
ADSC
Quantum
data reduction
HKL-2000
refinement
CNS
1.1
Stage V Sporolation Protein S (SPOVS) from Thermus thermophilus Zinc form
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
ARG
11
A
ARG
11
HELX_P
A
GLY
27
A
GLY
27
1
1
17
A
GLY
35
A
GLY
35
HELX_P
A
ALA
54
A
ALA
54
1
2
20
B
ARG
11
B
ARG
11
HELX_P
B
LYS
26
B
LYS
26
1
3
16
B
GLY
35
B
GLY
35
HELX_P
B
ALA
54
B
ALA
54
1
4
20
metalc
2.233
A
GLU
30
A
OE1
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
metalc
2.608
A
GLU
30
A
OE2
GLU
30
6_555
B
ZN
101
D
ZN
ZN
1_555
metalc
2.511
A
GLU
72
A
OE2
GLU
72
1_555
A
ZN
102
C
ZN
ZN
1_555
metalc
2.058
A
GLU
74
A
OE2
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
metalc
2.410
A
GLU
74
A
OE1
GLU
74
1_555
A
ZN
102
C
ZN
ZN
1_555
metalc
2.269
A
GLU
75
A
OE1
GLU
75
8_555
B
ZN
103
E
ZN
ZN
1_555
metalc
2.266
A
GLU
75
A
OE1
GLU
75
6_555
B
ZN
103
E
ZN
ZN
1_555
metalc
2.176
A
LYS
80
A
NZ
LYS
80
6_555
B
ZN
101
D
ZN
ZN
1_555
metalc
2.138
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE1
GLU
30
8_455
metalc
2.495
A
ZN
102
C
ZN
ZN
1_555
B
GLU
30
B
OE2
GLU
30
8_455
metalc
2.233
A
ZN
102
C
ZN
ZN
1_555
B
LYS
80
B
NZ
LYS
80
8_455
metalc
2.036
B
GLU
74
B
OE2
GLU
74
1_555
B
ZN
101
D
ZN
ZN
1_555
metalc
2.654
B
GLU
74
B
OE1
GLU
74
1_555
B
ZN
101
D
ZN
ZN
1_555
metalc
2.331
B
GLU
75
B
OE1
GLU
75
1_555
B
ZN
103
E
ZN
ZN
1_555
metalc
2.325
B
GLU
75
B
OE1
GLU
75
3_655
B
ZN
103
E
ZN
ZN
1_555
metalc
2.758
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
1_555
metalc
2.756
B
ZN
103
E
ZN
ZN
1_555
B
HOH
110
G
O
HOH
3_655
METAL BINDING PROTEIN
Sporulation, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, METAL BINDING PROTEIN
Q5SK02_THET8
UNP
1
1
Q5SK02
METLRVSSKSRPNSVAGAIAALLRTKGEVEVQAIGPQAVNQAVKAIAIARGYIAPDNLDLVVKPAFVKLELENEERTALK
FSIKAHPLET
1
90
2EK0
1
90
Q5SK02
A
1
1
90
1
90
2EK0
1
90
Q5SK02
B
1
1
90
1
LEU
engineered mutation
MET
22
2EK0
A
Q5SK02
UNP
22
22
2
LEU
engineered mutation
MET
22
2EK0
B
Q5SK02
UNP
22
22
4
4
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
3
A
THR
3
A
VAL
6
A
VAL
6
A
GLU
28
A
GLU
28
A
ALA
33
A
ALA
33
A
GLU
74
A
GLU
74
A
PRO
87
A
PRO
87
A
LEU
58
A
LEU
58
A
LEU
71
A
LEU
71
B
THR
3
B
THR
3
B
ARG
5
B
ARG
5
B
GLU
28
B
GLU
28
B
ALA
33
B
ALA
33
B
GLU
74
B
GLU
74
B
HIS
86
B
HIS
86
B
ASP
59
B
ASP
59
B
LEU
71
B
LEU
71
20
C 2 2 21