1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Tochio, N.
Tomizawa, T.
Abe, H.
Saito, K.
Li, H.
Sato, M.
Koshiba, S.
Kobayashi, N.
Kigawa, T.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution structure of the C2H2 type zinc finger (region 859-889) of human Zinc finger protein 268
10.2210/pdb2emv/pdb
pdb_00002emv
4603.958
Zinc finger protein 268
zf-C2H2 domain
1
man
polymer
65.409
ZINC ION
1
syn
non-polymer
Zinc finger protein HZF3
no
no
GSSGSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG
GSSGSSGTREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG
A
hso003011774.19
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
cell-free protein synthesis
ZNF268
9606
Homo sapiens
plasmid
P061225-03
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2007-10-02
1
1
2011-07-13
1
2
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Y
PDBJ
Y
PDBJ
2007-03-28
REL
REL
ZN
ZINC ION
structures with the least restraint violations, target function
100
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120mM
7.0
ambient
296
K
torsion angle dynamics
1
lowest energy
about 1.0mM sample U-15N,13C; 20mM d-Tris-HCl; 100mM NaCl; 0.05MM ZnCl2; 1mM IDA; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O
90% H2O/10% D2O
Bruker
collection
XwinNMR
3.5
Delaglio, F.
processing
NMRPipe
20030801
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9820
Guntert, P.
structure solution
CYANA
2.0.17
Guntert, P.
refinement
CYANA
2.0.17
800
Bruker
AVANCE
ZN
201
2
ZN
ZN
201
A
GLY
1
n
1
GLY
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLY
4
n
4
GLY
4
A
SER
5
n
5
SER
5
A
SER
6
n
6
SER
6
A
GLY
7
n
7
GLY
7
A
THR
8
n
8
THR
8
A
ARG
9
n
9
ARG
9
A
GLU
10
n
10
GLU
10
A
LYS
11
n
11
LYS
11
A
PRO
12
n
12
PRO
12
A
TYR
13
n
13
TYR
13
A
GLU
14
n
14
GLU
14
A
CYS
15
n
15
CYS
15
A
SER
16
n
16
SER
16
A
GLU
17
n
17
GLU
17
A
CYS
18
n
18
CYS
18
A
GLY
19
n
19
GLY
19
A
LYS
20
n
20
LYS
20
A
ALA
21
n
21
ALA
21
A
PHE
22
n
22
PHE
22
A
ILE
23
n
23
ILE
23
A
ARG
24
n
24
ARG
24
A
ASN
25
n
25
ASN
25
A
SER
26
n
26
SER
26
A
GLN
27
n
27
GLN
27
A
LEU
28
n
28
LEU
28
A
ILE
29
n
29
ILE
29
A
VAL
30
n
30
VAL
30
A
HIS
31
n
31
HIS
31
A
GLN
32
n
32
GLN
32
A
ARG
33
n
33
ARG
33
A
THR
34
n
34
THR
34
A
HIS
35
n
35
HIS
35
A
SER
36
n
36
SER
36
A
GLY
37
n
37
GLY
37
A
GLU
38
n
38
GLU
38
A
SER
39
n
39
SER
39
A
GLY
40
n
40
GLY
40
A
PRO
41
n
41
PRO
41
A
SER
42
n
42
SER
42
A
SER
43
n
43
SER
43
A
GLY
44
n
44
GLY
44
A
author_defined_assembly
1
monomeric
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
201
B
ZN
ZN
1_555
A
CYS
18
A
SG
CYS
18
1_555
113.4
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
31
A
NE2
HIS
31
1_555
112.8
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
31
A
NE2
HIS
31
1_555
99.6
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
35
A
NE2
HIS
35
1_555
116.4
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
35
A
NE2
HIS
35
1_555
111.7
A
HIS
31
A
NE2
HIS
31
1_555
A
ZN
201
B
ZN
ZN
1_555
A
HIS
35
A
NE2
HIS
35
1_555
101.0
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
TYR
13
A
N
TYR
13
A
O
PHE
22
A
O
PHE
22
1
A
SER
2
-39.10
154.22
1
A
SER
5
39.85
45.33
1
A
LYS
20
-49.47
-179.30
1
A
SER
36
-37.87
135.92
1
A
SER
42
71.45
40.80
2
A
GLU
10
-84.59
32.34
2
A
LYS
20
-50.40
-178.19
3
A
GLU
10
-85.49
43.38
3
A
LYS
20
-48.09
177.33
3
A
SER
42
-35.83
132.32
3
A
SER
43
-36.02
148.89
4
A
LYS
11
-34.45
142.73
4
A
LYS
20
-50.49
177.03
5
A
LYS
20
-48.57
178.91
5
A
SER
39
-82.12
43.74
5
A
SER
42
34.35
43.46
6
A
SER
3
-41.48
151.07
6
A
LYS
20
-50.26
-177.60
7
A
LYS
11
-34.42
129.97
7
A
LYS
20
-49.46
-179.48
8
A
LYS
20
-52.62
178.88
8
A
GLU
38
-85.46
34.51
8
A
PRO
41
-69.77
91.84
9
A
SER
5
-174.84
134.40
9
A
SER
6
-96.12
-62.14
9
A
LYS
20
-50.88
179.19
9
A
SER
39
38.19
46.94
9
A
PRO
41
-69.76
2.79
9
A
SER
42
-34.41
99.14
10
A
ARG
9
-56.64
108.30
10
A
LYS
20
-42.72
164.37
10
A
SER
43
-172.15
126.55
11
A
SER
6
-38.99
143.74
11
A
LYS
11
-34.05
132.64
11
A
GLU
17
-130.22
-44.08
11
A
LYS
20
-53.21
-179.81
12
A
ARG
9
-109.01
78.53
12
A
LYS
20
-48.79
179.18
13
A
SER
5
-92.73
42.29
13
A
SER
6
-121.30
-54.37
13
A
THR
8
-169.61
117.70
13
A
LYS
20
-50.28
-177.63
13
A
SER
36
-81.12
44.58
13
A
SER
43
-174.61
114.51
14
A
SER
5
-125.92
-56.73
14
A
ARG
9
-97.60
47.55
14
A
LYS
20
-52.80
179.04
14
A
SER
26
-39.13
-35.25
14
A
SER
42
-49.03
103.77
15
A
SER
2
-96.14
42.44
15
A
ARG
9
-37.30
112.83
15
A
LYS
20
-49.29
179.99
15
A
PRO
41
-69.79
94.78
16
A
GLU
10
-130.79
-41.44
16
A
LYS
20
-54.48
-174.76
16
A
SER
26
-39.51
-37.66
16
A
SER
42
-61.17
86.93
17
A
SER
5
-91.00
55.97
17
A
GLU
10
-82.83
45.84
17
A
LYS
20
-57.29
-174.69
17
A
PRO
41
-69.78
2.72
17
A
SER
42
-34.50
132.12
18
A
THR
8
-39.67
128.84
18
A
LYS
20
-48.97
169.18
18
A
SER
36
-38.77
119.29
18
A
SER
39
-104.44
41.71
19
A
SER
2
-133.39
-46.69
19
A
SER
3
39.83
42.55
19
A
LYS
20
-50.74
-176.44
19
A
PRO
41
-69.81
0.88
20
A
SER
5
-170.45
142.66
20
A
LYS
20
-49.58
177.52
20
A
SER
26
-39.39
-39.95
20
A
SER
39
-69.22
96.37
20
A
PRO
41
-69.75
88.08
Solution structure of the C2H2 type zinc finger (region 859-889) of human Zinc finger protein 268
1
N
N
2
N
N
A
ARG
24
A
ARG
24
HELX_P
A
SER
36
A
SER
36
1
1
13
metalc
2.370
A
CYS
15
A
SG
CYS
15
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.348
A
CYS
18
A
SG
CYS
18
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.367
A
HIS
31
A
NE2
HIS
31
1_555
A
ZN
201
B
ZN
ZN
1_555
metalc
2.327
A
HIS
35
A
NE2
HIS
35
1_555
A
ZN
201
B
ZN
ZN
1_555
TRANSCRIPTION
zf-C2H2, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSCRIPTION
ZN268_HUMAN
UNP
1
859
Q14587
TREKPYECSECGKAFIRNSQLIVHQRTHSGE
859
889
2EMV
8
38
Q14587
A
1
8
38
1
expression tag
GLY
1
2EMV
A
Q14587
UNP
1
1
expression tag
SER
2
2EMV
A
Q14587
UNP
2
1
expression tag
SER
3
2EMV
A
Q14587
UNP
3
1
expression tag
GLY
4
2EMV
A
Q14587
UNP
4
1
expression tag
SER
5
2EMV
A
Q14587
UNP
5
1
expression tag
SER
6
2EMV
A
Q14587
UNP
6
1
expression tag
GLY
7
2EMV
A
Q14587
UNP
7
1
expression tag
SER
39
2EMV
A
Q14587
UNP
39
1
expression tag
GLY
40
2EMV
A
Q14587
UNP
40
1
expression tag
PRO
41
2EMV
A
Q14587
UNP
41
1
expression tag
SER
42
2EMV
A
Q14587
UNP
42
1
expression tag
SER
43
2EMV
A
Q14587
UNP
43
1
expression tag
GLY
44
2EMV
A
Q14587
UNP
44
2
anti-parallel
A
TYR
13
A
TYR
13
A
GLU
14
A
GLU
14
A
ALA
21
A
ALA
21
A
PHE
22
A
PHE
22