1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Nagashima, T.
Hayashi, F.
Yokoyama, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
Zn 2
65.409
ZINC ION
non-polymer
To be Published
0353
Solution structure of the second C1 domain from human protein kinase C theta
10.2210/pdb2enz/pdb
pdb_00002enz
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
7140.268
Protein kinase C theta type
2.7.11.13
c1 domain, Phorbol-ester/DAG-type 2
1
man
polymer
65.409
ZINC ION
2
syn
non-polymer
nPKC-theta
no
no
GSSGSSGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGIN
GSSGSSGKIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGIN
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
sample
Cell-free protein synthesis
9606
Homo sapiens
plasmid
P060227-08
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
database_2
pdbx_nmr_software
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-04-01
1
1
2011-07-13
1
2
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2007-03-28
REL
REL
ZN
ZINC ION
structures with the least restraint violations, target function
100
20
3D_13C-separated_NOESY
3D_15N-separated_NOESY
120mM
7.0
ambient
293
K
torsion angle dynamics
1
lowest energy
1.08mM uniformly 13C,15N-labeled protein; 20mM TrisHCl; 100mM NaCl; 1mM DTT; 0.02% NaN3; 0.05mM ZnCl2; 1mM IDA; 10% D2O, 90% H2O
10% D2O, 90% H2O
Varian
collection
VNMR
6.1C
Delaglio, F.
processing
NMRPipe
20020425
Johnson, B.A.
data analysis
NMRView
5.0.4
Kobayashi, N.
data analysis
KUJIRA
0.9822
Guntert, P.
structure solution
CYANA
2.1
Guntert, P.
refinement
CYANA
2.1
900
Varian
INOVA
800
Varian
INOVA
ZN
300
2
ZN
ZN
300
A
ZN
400
2
ZN
ZN
400
A
GLY
220
n
1
GLY
220
A
SER
221
n
2
SER
221
A
SER
222
n
3
SER
222
A
GLY
223
n
4
GLY
223
A
SER
224
n
5
SER
224
A
SER
225
n
6
SER
225
A
GLY
226
n
7
GLY
226
A
LYS
227
n
8
LYS
227
A
ILE
228
n
9
ILE
228
A
ASP
229
n
10
ASP
229
A
MET
230
n
11
MET
230
A
PRO
231
n
12
PRO
231
A
HIS
232
n
13
HIS
232
A
ARG
233
n
14
ARG
233
A
PHE
234
n
15
PHE
234
A
LYS
235
n
16
LYS
235
A
VAL
236
n
17
VAL
236
A
TYR
237
n
18
TYR
237
A
ASN
238
n
19
ASN
238
A
TYR
239
n
20
TYR
239
A
LYS
240
n
21
LYS
240
A
SER
241
n
22
SER
241
A
PRO
242
n
23
PRO
242
A
THR
243
n
24
THR
243
A
PHE
244
n
25
PHE
244
A
CYS
245
n
26
CYS
245
A
GLU
246
n
27
GLU
246
A
HIS
247
n
28
HIS
247
A
CYS
248
n
29
CYS
248
A
GLY
249
n
30
GLY
249
A
THR
250
n
31
THR
250
A
LEU
251
n
32
LEU
251
A
LEU
252
n
33
LEU
252
A
TRP
253
n
34
TRP
253
A
GLY
254
n
35
GLY
254
A
LEU
255
n
36
LEU
255
A
ALA
256
n
37
ALA
256
A
ARG
257
n
38
ARG
257
A
GLN
258
n
39
GLN
258
A
GLY
259
n
40
GLY
259
A
LEU
260
n
41
LEU
260
A
LYS
261
n
42
LYS
261
A
CYS
262
n
43
CYS
262
A
ASP
263
n
44
ASP
263
A
ALA
264
n
45
ALA
264
A
CYS
265
n
46
CYS
265
A
GLY
266
n
47
GLY
266
A
MET
267
n
48
MET
267
A
ASN
268
n
49
ASN
268
A
VAL
269
n
50
VAL
269
A
HIS
270
n
51
HIS
270
A
HIS
271
n
52
HIS
271
A
ARG
272
n
53
ARG
272
A
CYS
273
n
54
CYS
273
A
GLN
274
n
55
GLN
274
A
THR
275
n
56
THR
275
A
LYS
276
n
57
LYS
276
A
VAL
277
n
58
VAL
277
A
ALA
278
n
59
ALA
278
A
ASN
279
n
60
ASN
279
A
LEU
280
n
61
LEU
280
A
CYS
281
n
62
CYS
281
A
GLY
282
n
63
GLY
282
A
ILE
283
n
64
ILE
283
A
ASN
284
n
65
ASN
284
A
author_defined_assembly
1
monomeric
A
HIS
232
A
ND1
HIS
13
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
262
A
SG
CYS
43
1_555
117.9
A
HIS
232
A
ND1
HIS
13
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
265
A
SG
CYS
46
1_555
107.0
A
CYS
262
A
SG
CYS
43
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
265
A
SG
CYS
46
1_555
104.5
A
HIS
232
A
ND1
HIS
13
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
281
A
SG
CYS
62
1_555
112.1
A
CYS
262
A
SG
CYS
43
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
281
A
SG
CYS
62
1_555
107.3
A
CYS
265
A
SG
CYS
46
1_555
A
ZN
300
B
ZN
ZN
1_555
A
CYS
281
A
SG
CYS
62
1_555
107.3
A
CYS
245
A
SG
CYS
26
1_555
A
ZN
400
C
ZN
ZN
1_555
A
CYS
248
A
SG
CYS
29
1_555
103.6
A
CYS
245
A
SG
CYS
26
1_555
A
ZN
400
C
ZN
ZN
1_555
A
HIS
270
A
ND1
HIS
51
1_555
109.4
A
CYS
248
A
SG
CYS
29
1_555
A
ZN
400
C
ZN
ZN
1_555
A
HIS
270
A
ND1
HIS
51
1_555
105.5
A
CYS
245
A
SG
CYS
26
1_555
A
ZN
400
C
ZN
ZN
1_555
A
CYS
273
A
SG
CYS
54
1_555
111.6
A
CYS
248
A
SG
CYS
29
1_555
A
ZN
400
C
ZN
ZN
1_555
A
CYS
273
A
SG
CYS
54
1_555
109.0
A
HIS
270
A
ND1
HIS
51
1_555
A
ZN
400
C
ZN
ZN
1_555
A
CYS
273
A
SG
CYS
54
1_555
116.7
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
235
A
N
LYS
16
A
O
LYS
261
A
O
LYS
42
A
N
LEU
260
A
N
LEU
41
A
O
VAL
269
A
O
VAL
50
1
A
ARG
233
-69.99
69.27
1
A
LEU
255
-124.19
-56.82
1
A
ARG
257
-109.02
43.36
1
A
GLN
258
-52.44
86.68
1
A
ALA
264
-96.57
-74.14
1
A
ASN
279
-94.43
41.56
2
A
LYS
227
-105.47
64.18
2
A
ARG
233
-69.96
72.46
2
A
SER
241
62.22
147.15
2
A
CYS
245
-53.32
109.06
2
A
HIS
247
-93.14
-67.05
2
A
LEU
255
-125.57
-72.58
2
A
ARG
257
-104.30
41.89
2
A
HIS
270
-52.63
-175.24
2
A
ASN
279
-95.63
45.74
3
A
SER
225
-39.62
114.39
3
A
ARG
233
-69.39
70.12
3
A
HIS
247
-119.33
-71.64
3
A
LEU
251
-47.76
157.80
3
A
LEU
255
-102.63
-74.84
3
A
GLN
258
34.32
43.30
3
A
ALA
264
-101.65
-71.58
3
A
HIS
270
-52.19
-174.92
4
A
ASP
229
-40.84
102.73
4
A
ARG
233
-66.43
72.64
4
A
LEU
251
-44.70
168.37
4
A
ALA
264
-112.67
-71.39
4
A
HIS
270
-51.58
-175.28
4
A
ASN
279
-88.35
34.63
5
A
ASP
229
-37.47
114.68
5
A
ARG
233
-69.69
69.58
5
A
CYS
245
-56.81
101.48
5
A
HIS
247
-82.67
-70.82
5
A
LEU
251
-59.28
178.32
5
A
LEU
255
-108.41
-64.72
5
A
GLN
258
35.84
38.67
5
A
HIS
270
-58.77
-177.91
5
A
ILE
283
-72.66
-89.12
6
A
ARG
233
-63.63
74.39
6
A
LYS
240
-130.81
-62.23
6
A
HIS
247
-121.76
-67.15
6
A
ARG
272
-93.87
-63.29
7
A
ILE
228
-107.67
76.20
7
A
SER
241
-39.00
144.35
7
A
HIS
247
-87.23
-70.09
7
A
TRP
253
-173.23
130.92
7
A
ALA
256
-37.61
-34.43
7
A
ARG
257
-86.65
36.51
7
A
GLN
258
-41.28
-74.29
7
A
HIS
270
-51.64
179.06
7
A
CYS
273
-39.29
-27.76
7
A
ILE
283
-83.45
-77.86
8
A
SER
241
-39.09
153.23
8
A
HIS
247
-97.65
-67.79
8
A
LEU
252
-46.24
172.16
8
A
TRP
253
-173.74
133.35
8
A
LEU
255
-90.67
-74.50
8
A
GLN
258
-36.48
114.81
8
A
ALA
264
-93.93
-60.20
8
A
HIS
270
-48.56
172.15
8
A
ILE
283
-90.66
-79.58
9
A
HIS
247
-117.80
-72.07
9
A
ARG
257
45.22
26.20
9
A
GLN
258
-42.03
104.19
9
A
ALA
264
-107.42
-60.71
9
A
HIS
270
-51.28
-175.75
9
A
ASN
279
-95.13
48.22
10
A
SER
224
-107.46
76.48
10
A
SER
225
-103.62
76.33
10
A
HIS
247
-127.98
-68.13
10
A
LEU
255
-116.79
-70.42
10
A
ALA
256
-100.92
-64.17
10
A
HIS
270
-50.93
-178.85
10
A
ASN
279
-86.64
30.79
10
A
LEU
280
-103.34
67.56
11
A
CYS
245
-39.69
128.91
11
A
HIS
247
-113.75
-71.22
11
A
LEU
251
-63.90
-179.52
11
A
LEU
252
-171.04
124.84
11
A
ARG
257
-78.61
47.94
11
A
HIS
270
-64.52
-178.71
12
A
ASP
229
-162.66
114.32
12
A
SER
241
-44.22
151.08
12
A
HIS
247
-120.93
-68.40
12
A
ALA
256
-105.15
-64.33
12
A
HIS
270
-65.87
-175.88
12
A
ALA
278
-47.84
173.33
12
A
ASN
279
-99.90
46.57
13
A
SER
221
-39.64
129.55
13
A
PRO
242
-69.71
77.87
13
A
HIS
247
-110.94
-73.02
13
A
LEU
251
-34.58
126.16
13
A
TRP
253
-34.64
-74.66
13
A
GLN
258
-36.04
94.16
13
A
ALA
264
-102.90
-74.52
13
A
HIS
270
-54.92
-174.94
14
A
PRO
242
-69.75
78.82
14
A
HIS
247
-101.56
-70.28
14
A
TRP
253
-39.12
94.17
14
A
ALA
256
71.81
47.54
14
A
ARG
257
74.89
50.49
14
A
ASN
279
-94.42
50.67
14
A
LEU
280
-118.56
73.55
15
A
HIS
247
-110.03
-73.25
15
A
LEU
251
-34.78
146.35
15
A
GLN
258
-37.84
93.46
15
A
HIS
270
-59.04
-175.82
15
A
LEU
280
-108.90
79.48
16
A
PRO
242
-69.72
88.57
16
A
ALA
256
-172.80
144.18
16
A
ALA
264
-106.54
-67.39
17
A
SER
241
-176.10
146.71
17
A
PRO
242
-69.64
87.04
17
A
HIS
247
-110.64
-70.64
17
A
LEU
255
-56.37
179.96
17
A
ALA
264
-76.29
-73.17
17
A
ASN
279
-83.22
41.36
18
A
SER
221
-83.26
-72.42
18
A
PRO
242
-69.79
92.83
18
A
CYS
245
-39.35
140.76
18
A
HIS
247
-123.56
-66.87
18
A
TRP
253
-173.52
129.70
18
A
ALA
256
-39.08
-35.64
18
A
ARG
257
-93.56
57.61
18
A
ALA
264
-102.40
-65.10
18
A
HIS
270
-67.54
-176.45
18
A
ASN
279
-104.12
50.95
19
A
SER
241
-36.34
150.78
19
A
HIS
247
-119.13
-73.22
19
A
LEU
255
-125.75
-70.09
19
A
ARG
257
44.88
26.19
19
A
GLN
258
-54.20
108.30
19
A
ALA
264
-83.86
-71.32
19
A
LEU
280
-106.83
65.79
20
A
HIS
247
-110.89
-70.81
20
A
ARG
257
36.15
44.98
20
A
ASN
279
-98.25
50.58
Solution structure of the second C1 domain from human protein kinase C theta
1
N
N
2
N
N
2
N
N
metalc
2.049
A
HIS
232
A
ND1
HIS
13
1_555
A
ZN
300
B
ZN
ZN
1_555
metalc
2.346
A
CYS
245
A
SG
CYS
26
1_555
A
ZN
400
C
ZN
ZN
1_555
metalc
2.348
A
CYS
248
A
SG
CYS
29
1_555
A
ZN
400
C
ZN
ZN
1_555
metalc
2.266
A
CYS
262
A
SG
CYS
43
1_555
A
ZN
300
B
ZN
ZN
1_555
metalc
2.350
A
CYS
265
A
SG
CYS
46
1_555
A
ZN
300
B
ZN
ZN
1_555
metalc
2.049
A
HIS
270
A
ND1
HIS
51
1_555
A
ZN
400
C
ZN
ZN
1_555
metalc
2.291
A
CYS
273
A
SG
CYS
54
1_555
A
ZN
400
C
ZN
ZN
1_555
metalc
2.264
A
CYS
281
A
SG
CYS
62
1_555
A
ZN
300
B
ZN
ZN
1_555
TRANSFERASE
zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, PKC, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, TRANSFERASE
KPCT_HUMAN
UNP
1
227
Q04759
KIDMPHRFKVYNYKSPTFCEHCGTLLWGLARQGLKCDACGMNVHHRCQTKVANLCGIN
227
284
2ENZ
227
284
Q04759
A
1
8
65
1
expression tag
GLY
220
2ENZ
A
Q04759
UNP
1
1
expression tag
SER
221
2ENZ
A
Q04759
UNP
2
1
expression tag
SER
222
2ENZ
A
Q04759
UNP
3
1
expression tag
GLY
223
2ENZ
A
Q04759
UNP
4
1
expression tag
SER
224
2ENZ
A
Q04759
UNP
5
1
expression tag
SER
225
2ENZ
A
Q04759
UNP
6
1
expression tag
GLY
226
2ENZ
A
Q04759
UNP
7
3
anti-parallel
anti-parallel
A
PHE
234
A
PHE
15
A
VAL
236
A
VAL
17
A
LEU
260
A
LEU
41
A
CYS
262
A
CYS
43
A
ASN
268
A
ASN
49
A
VAL
269
A
VAL
50
BINDING SITE FOR RESIDUE ZN A 300
A
ZN
300
Software
3
BINDING SITE FOR RESIDUE ZN A 400
A
ZN
400
Software
3
A
PRO
231
A
PRO
12
3
1_555
A
HIS
232
A
HIS
13
3
1_555
A
ARG
233
A
ARG
14
3
1_555
A
CYS
245
A
CYS
26
3
1_555
A
HIS
247
A
HIS
28
3
1_555
A
HIS
270
A
HIS
51
3
1_555