0.011711
0.000000
0.000000
0.000000
0.008275
0.000000
0.000000
0.000000
0.014803
0.00000
0.00000
0.00000
Agari, Y.
Shinkai, A.
Yokoyama, S.
Kuramitsu, S.
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
85.391
120.843
67.552
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C10 H14 N5 O7 P
347.221
ADENOSINE MONOPHOSPHATE
non-polymer
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
P
N
15
N
O
N
16
N
O
N
17
N
O
N
18
N
O
N
19
N
C
N
20
R
C
N
21
N
O
N
22
S
C
N
23
N
O
N
24
R
C
N
25
N
O
N
26
R
C
Y
27
N
N
Y
28
N
C
Y
29
N
N
Y
30
N
C
Y
31
N
C
N
32
N
N
Y
33
N
N
Y
34
N
C
Y
35
N
N
Y
36
N
C
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
H
N
42
N
H
N
43
N
H
N
44
N
H
N
45
N
H
N
46
N
H
N
47
N
H
N
48
N
H
N
49
N
H
N
50
N
H
N
51
N
N
N
52
S
C
N
53
N
C
N
54
N
O
N
55
N
C
N
56
N
C
N
57
N
C
N
58
N
N
N
59
N
C
N
60
N
N
N
61
N
N
N
62
N
O
N
63
N
H
N
64
N
H
N
65
N
H
N
66
N
H
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
H
N
78
N
N
N
79
S
C
N
80
N
C
N
81
N
O
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
N
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
N
N
96
S
C
N
97
N
C
N
98
N
O
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
N
N
112
R
C
N
113
N
C
N
114
N
O
N
115
N
C
N
116
N
S
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
N
N
126
S
C
N
127
N
C
N
128
N
O
N
129
N
C
N
130
N
C
N
131
N
C
N
132
N
O
N
133
N
N
N
134
N
O
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
N
N
146
S
C
N
147
N
C
N
148
N
O
N
149
N
C
N
150
N
C
N
151
N
C
N
152
N
O
N
153
N
O
N
154
N
O
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
N
N
165
N
C
N
166
N
C
N
167
N
O
N
168
N
O
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
Y
179
N
C
Y
180
N
N
Y
181
N
C
Y
182
N
C
Y
183
N
N
N
184
N
O
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
O
N
196
N
H
N
197
N
H
N
198
N
N
N
199
S
C
N
200
N
C
N
201
N
O
N
202
S
C
N
203
N
C
N
204
N
C
N
205
N
C
N
206
N
O
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
N
N
221
S
C
N
222
N
C
N
223
N
O
N
224
N
C
N
225
N
C
N
226
N
C
N
227
N
C
N
228
N
O
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
C
N
250
N
N
N
251
N
O
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
MG
N
268
N
N
N
269
S
C
N
270
N
C
N
271
N
O
N
272
N
O
N
273
N
C
N
274
N
C
N
275
N
SE
N
276
N
C
N
277
N
H
N
278
N
H
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
Y
293
N
C
Y
294
N
C
Y
295
N
C
Y
296
N
C
Y
297
N
C
Y
298
N
C
N
299
N
O
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
N
N
312
S
C
N
313
N
C
N
314
N
O
N
315
N
C
N
316
N
C
N
317
N
C
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
N
N
329
S
C
N
330
N
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
N
N
343
S
C
N
344
N
C
N
345
N
O
N
346
R
C
N
347
N
O
N
348
N
C
N
349
N
O
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
N
N
360
S
C
N
361
N
C
N
362
N
O
N
363
N
C
Y
364
N
C
Y
365
N
C
Y
366
N
C
Y
367
N
N
Y
368
N
C
Y
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
N
373
N
O
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
N
N
387
S
C
N
388
N
C
N
389
N
O
N
390
N
C
Y
391
N
C
Y
392
N
C
Y
393
N
C
Y
394
N
C
Y
395
N
C
Y
396
N
C
N
397
N
O
N
398
N
O
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
N
N
411
S
C
N
412
N
C
N
413
N
O
N
414
N
C
N
415
N
C
N
416
N
C
N
417
N
O
N
418
N
H
N
419
N
H
N
420
N
H
N
421
N
H
N
422
N
H
N
423
N
H
N
424
N
H
N
425
N
H
N
426
N
H
N
427
N
H
N
428
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
doub
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
sing
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
sing
N
34
N
sing
N
35
N
sing
N
36
N
sing
Y
37
N
sing
Y
38
N
sing
Y
39
N
doub
N
40
N
sing
Y
41
N
sing
Y
42
N
sing
Y
43
N
doub
N
44
N
sing
Y
45
N
doub
N
46
N
sing
N
47
N
sing
Y
48
N
sing
Y
49
N
doub
N
50
N
sing
Y
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
doub
N
59
N
sing
N
60
N
sing
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
doub
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
doub
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
doub
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
doub
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
doub
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
doub
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
doub
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
doub
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
doub
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
doub
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
Y
179
N
sing
Y
180
N
doub
Y
181
N
doub
N
182
N
sing
Y
183
N
sing
N
184
N
sing
Y
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
doub
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
doub
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
doub
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
doub
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
doub
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
Y
287
N
doub
Y
288
N
sing
Y
289
N
sing
N
290
N
sing
Y
291
N
doub
N
292
N
sing
Y
293
N
doub
N
294
N
sing
Y
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
doub
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
doub
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
doub
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
Y
356
N
doub
Y
357
N
sing
Y
358
N
sing
N
359
N
sing
Y
360
N
doub
Y
361
N
sing
Y
362
N
sing
N
363
N
sing
Y
364
N
sing
Y
365
N
doub
N
366
N
sing
Y
367
N
doub
N
368
N
sing
Y
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
doub
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
Y
384
N
doub
Y
385
N
sing
Y
386
N
sing
N
387
N
sing
Y
388
N
doub
N
389
N
sing
Y
390
N
doub
N
391
N
sing
Y
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
N
397
N
sing
N
398
N
sing
N
399
N
sing
N
400
N
sing
N
401
N
sing
N
402
N
sing
N
403
N
doub
N
404
N
sing
N
405
N
sing
N
406
N
sing
N
407
N
sing
N
408
N
sing
N
409
N
sing
N
410
N
sing
N
411
N
sing
N
412
N
sing
N
413
N
sing
N
414
N
sing
US
Proteins
PSFGEY
0867
0887-3585
70
1108
1111
10.1002/prot.21794
18004774
X-ray crystal structure of a hypothetical Sua5 protein from Sulfolobus tokodaii strain 7
2008
10.2210/pdb2eqa/pdb
pdb_00002eqa
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
A fixed exit Si double crystal monochromator followed by a two dimensional focusing mirror which is coated in rhodium.
CCD
2006-10-07
RIGAKU JUPITER 210
Fixed exit Si double crystal monochromator
MAD
M
x-ray
1
0.97915
1.0
0.9
1.0
0.97973
1.0
BL26B2
SPring-8
0.97915, 0.9, 0.97973
SYNCHROTRON
SPRING-8 BEAMLINE BL26B2
39082.672
Hypothetical protein ST1526
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
347.221
ADENOSINE MONOPHOSPHATE
1
syn
non-polymer
18.015
water
180
nat
water
hypothetical Sua5 protein
no
yes
(MSE)TQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLF
EVAKDIPDKVLEIAQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVR(MSE)PAHPIALQLIRESGVPIAAPSANLATRPS
PTKAEDVIVDLNGRVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPG
(MSE)KYKHYAPNTRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDK
LNVDLGI(MSE)IGFPERGIGFAI(MSE)NRARKASGFSIIKAISDVYKYVNI
MTQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAK
DIPDKVLEIAQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVI
VDLNGRVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYAPN
TRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNVDLGIMIGFPE
RGIGFAIMNRARKASGFSIIKAISDVYKYVNI
A
sto001001526.1
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Sulfolobus
strain7
Escherichia
sample
SUA5
111955
Sulfolobus tokodaii
562
Escherichia coli
BL21-CodonPlus(DE3)-RIL-X
PLASMID
pET-21a
1
2.23
44.84
VAPOR DIFFUSION, SITTING DROP
4.6
0.1M Sodium Acetate, 4.0M Sodium Nitrate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
RIKEN Structural Genomics/Proteomics Initiative
RSGI
NPPSFA, National Project on Protein Structural and Functional Analyses
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Data collection
Database references
Derived calculations
1
0
2008-01-15
1
1
2011-07-13
1
2
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
PDBJ
Y
PDBJ
2007-03-30
REL
REL
MG
MAGNESIUM ION
AMP
ADENOSINE MONOPHOSPHATE
HOH
water
MG
2001
2
MG
MG
2001
A
AMP
1379
3
AMP
AMP
1379
A
HOH
1
4
HOH
HOH
2002
A
HOH
2
4
HOH
HOH
2003
A
HOH
3
4
HOH
HOH
2004
A
HOH
4
4
HOH
HOH
2005
A
HOH
5
4
HOH
HOH
2006
A
HOH
6
4
HOH
HOH
2007
A
HOH
7
4
HOH
HOH
2008
A
HOH
8
4
HOH
HOH
2009
A
HOH
9
4
HOH
HOH
2010
A
HOH
10
4
HOH
HOH
2011
A
HOH
11
4
HOH
HOH
2012
A
HOH
12
4
HOH
HOH
2013
A
HOH
13
4
HOH
HOH
2014
A
HOH
14
4
HOH
HOH
2015
A
HOH
15
4
HOH
HOH
2016
A
HOH
16
4
HOH
HOH
2017
A
HOH
17
4
HOH
HOH
2018
A
HOH
18
4
HOH
HOH
2019
A
HOH
19
4
HOH
HOH
2020
A
HOH
20
4
HOH
HOH
2021
A
HOH
21
4
HOH
HOH
2022
A
HOH
22
4
HOH
HOH
2023
A
HOH
23
4
HOH
HOH
2024
A
HOH
24
4
HOH
HOH
2025
A
HOH
25
4
HOH
HOH
2026
A
HOH
26
4
HOH
HOH
2027
A
HOH
27
4
HOH
HOH
2028
A
HOH
28
4
HOH
HOH
2029
A
HOH
29
4
HOH
HOH
2030
A
HOH
30
4
HOH
HOH
2031
A
HOH
31
4
HOH
HOH
2032
A
HOH
32
4
HOH
HOH
2033
A
HOH
33
4
HOH
HOH
2034
A
HOH
34
4
HOH
HOH
2035
A
HOH
35
4
HOH
HOH
2036
A
HOH
36
4
HOH
HOH
2037
A
HOH
37
4
HOH
HOH
2038
A
HOH
38
4
HOH
HOH
2039
A
HOH
39
4
HOH
HOH
2040
A
HOH
40
4
HOH
HOH
2041
A
HOH
41
4
HOH
HOH
2042
A
HOH
42
4
HOH
HOH
2043
A
HOH
43
4
HOH
HOH
2044
A
HOH
44
4
HOH
HOH
2045
A
HOH
45
4
HOH
HOH
2046
A
HOH
46
4
HOH
HOH
2047
A
HOH
47
4
HOH
HOH
2048
A
HOH
48
4
HOH
HOH
2049
A
HOH
49
4
HOH
HOH
2050
A
HOH
50
4
HOH
HOH
2051
A
HOH
51
4
HOH
HOH
2052
A
HOH
52
4
HOH
HOH
2053
A
HOH
53
4
HOH
HOH
2054
A
HOH
54
4
HOH
HOH
2055
A
HOH
55
4
HOH
HOH
2056
A
HOH
56
4
HOH
HOH
2057
A
HOH
57
4
HOH
HOH
2058
A
HOH
58
4
HOH
HOH
2059
A
HOH
59
4
HOH
HOH
2060
A
HOH
60
4
HOH
HOH
2061
A
HOH
61
4
HOH
HOH
2062
A
HOH
62
4
HOH
HOH
2063
A
HOH
63
4
HOH
HOH
2064
A
HOH
64
4
HOH
HOH
2065
A
HOH
65
4
HOH
HOH
2066
A
HOH
66
4
HOH
HOH
2067
A
HOH
67
4
HOH
HOH
2068
A
HOH
68
4
HOH
HOH
2069
A
HOH
69
4
HOH
HOH
2070
A
HOH
70
4
HOH
HOH
2071
A
HOH
71
4
HOH
HOH
2072
A
HOH
72
4
HOH
HOH
2073
A
HOH
73
4
HOH
HOH
2074
A
HOH
74
4
HOH
HOH
2075
A
HOH
75
4
HOH
HOH
2076
A
HOH
76
4
HOH
HOH
2077
A
HOH
77
4
HOH
HOH
2078
A
HOH
78
4
HOH
HOH
2079
A
HOH
79
4
HOH
HOH
2080
A
HOH
80
4
HOH
HOH
2081
A
HOH
81
4
HOH
HOH
2082
A
HOH
82
4
HOH
HOH
2083
A
HOH
83
4
HOH
HOH
2084
A
HOH
84
4
HOH
HOH
2085
A
HOH
85
4
HOH
HOH
2086
A
HOH
86
4
HOH
HOH
2087
A
HOH
87
4
HOH
HOH
2088
A
HOH
88
4
HOH
HOH
2089
A
HOH
89
4
HOH
HOH
2090
A
HOH
90
4
HOH
HOH
2091
A
HOH
91
4
HOH
HOH
2092
A
HOH
92
4
HOH
HOH
2093
A
HOH
93
4
HOH
HOH
2094
A
HOH
94
4
HOH
HOH
2095
A
HOH
95
4
HOH
HOH
2096
A
HOH
96
4
HOH
HOH
2097
A
HOH
97
4
HOH
HOH
2098
A
HOH
98
4
HOH
HOH
2099
A
HOH
99
4
HOH
HOH
2100
A
HOH
100
4
HOH
HOH
2101
A
HOH
101
4
HOH
HOH
2102
A
HOH
102
4
HOH
HOH
2103
A
HOH
103
4
HOH
HOH
2104
A
HOH
104
4
HOH
HOH
2105
A
HOH
105
4
HOH
HOH
2106
A
HOH
106
4
HOH
HOH
2107
A
HOH
107
4
HOH
HOH
2108
A
HOH
108
4
HOH
HOH
2109
A
HOH
109
4
HOH
HOH
2110
A
HOH
110
4
HOH
HOH
2111
A
HOH
111
4
HOH
HOH
2112
A
HOH
112
4
HOH
HOH
2113
A
HOH
113
4
HOH
HOH
2114
A
HOH
114
4
HOH
HOH
2115
A
HOH
115
4
HOH
HOH
2116
A
HOH
116
4
HOH
HOH
2117
A
HOH
117
4
HOH
HOH
2118
A
HOH
118
4
HOH
HOH
2119
A
HOH
119
4
HOH
HOH
2120
A
HOH
120
4
HOH
HOH
2121
A
HOH
121
4
HOH
HOH
2122
A
HOH
122
4
HOH
HOH
2123
A
HOH
123
4
HOH
HOH
2124
A
HOH
124
4
HOH
HOH
2125
A
HOH
125
4
HOH
HOH
2126
A
HOH
126
4
HOH
HOH
2127
A
HOH
127
4
HOH
HOH
2128
A
HOH
128
4
HOH
HOH
2129
A
HOH
129
4
HOH
HOH
2130
A
HOH
130
4
HOH
HOH
2131
A
HOH
131
4
HOH
HOH
2132
A
HOH
132
4
HOH
HOH
2133
A
HOH
133
4
HOH
HOH
2134
A
HOH
134
4
HOH
HOH
2135
A
HOH
135
4
HOH
HOH
2136
A
HOH
136
4
HOH
HOH
2137
A
HOH
137
4
HOH
HOH
2138
A
HOH
138
4
HOH
HOH
2139
A
HOH
140
4
HOH
HOH
2140
A
HOH
141
4
HOH
HOH
2141
A
HOH
142
4
HOH
HOH
2142
A
HOH
143
4
HOH
HOH
2143
A
HOH
144
4
HOH
HOH
2144
A
HOH
145
4
HOH
HOH
2145
A
HOH
146
4
HOH
HOH
2146
A
HOH
147
4
HOH
HOH
2147
A
HOH
148
4
HOH
HOH
2148
A
HOH
149
4
HOH
HOH
2149
A
HOH
150
4
HOH
HOH
2150
A
HOH
151
4
HOH
HOH
2151
A
HOH
152
4
HOH
HOH
2152
A
HOH
153
4
HOH
HOH
2153
A
HOH
154
4
HOH
HOH
2154
A
HOH
155
4
HOH
HOH
2155
A
HOH
157
4
HOH
HOH
2156
A
HOH
158
4
HOH
HOH
2157
A
HOH
159
4
HOH
HOH
2158
A
HOH
160
4
HOH
HOH
2159
A
HOH
161
4
HOH
HOH
2160
A
HOH
162
4
HOH
HOH
2161
A
HOH
163
4
HOH
HOH
2162
A
HOH
164
4
HOH
HOH
2163
A
HOH
165
4
HOH
HOH
2164
A
HOH
166
4
HOH
HOH
2165
A
HOH
167
4
HOH
HOH
2166
A
HOH
168
4
HOH
HOH
2167
A
HOH
169
4
HOH
HOH
2168
A
HOH
170
4
HOH
HOH
2169
A
HOH
171
4
HOH
HOH
2170
A
HOH
172
4
HOH
HOH
2171
A
HOH
173
4
HOH
HOH
2172
A
HOH
174
4
HOH
HOH
2173
A
HOH
175
4
HOH
HOH
2174
A
HOH
176
4
HOH
HOH
2175
A
HOH
177
4
HOH
HOH
2176
A
HOH
178
4
HOH
HOH
2177
A
HOH
179
4
HOH
HOH
2178
A
HOH
180
4
HOH
HOH
2179
A
HOH
181
4
HOH
HOH
2180
A
HOH
182
4
HOH
HOH
2181
A
n
1
1
A
THR
2
n
2
THR
2
A
GLN
3
n
3
GLN
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
LYS
6
n
6
LYS
6
A
ILE
7
n
7
ILE
7
A
ASP
8
n
8
ASP
8
A
PRO
9
n
9
PRO
9
A
LEU
10
n
10
LEU
10
A
ASN
11
n
11
ASN
11
A
PRO
12
n
12
PRO
12
A
GLU
13
n
13
GLU
13
A
ILE
14
n
14
ILE
14
A
ASP
15
n
15
ASP
15
A
LYS
16
n
16
LYS
16
A
ILE
17
n
17
ILE
17
A
LYS
18
n
18
LYS
18
A
ILE
19
n
19
ILE
19
A
ALA
20
n
20
ALA
20
A
ALA
21
n
21
ALA
21
A
ASP
22
n
22
ASP
22
A
VAL
23
n
23
VAL
23
A
ILE
24
n
24
ILE
24
A
ARG
25
n
25
ARG
25
A
ASN
26
n
26
ASN
26
A
GLY
27
n
27
GLY
27
A
GLY
28
n
28
GLY
28
A
THR
29
n
29
THR
29
A
VAL
30
n
30
VAL
30
A
ALA
31
n
31
ALA
31
A
PHE
32
n
32
PHE
32
A
PRO
33
n
33
PRO
33
A
THR
34
n
34
THR
34
A
GLU
35
n
35
GLU
35
A
THR
36
n
36
THR
36
A
VAL
37
n
37
VAL
37
A
TYR
38
n
38
TYR
38
A
GLY
39
n
39
GLY
39
A
LEU
40
n
40
LEU
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
ASN
43
n
43
ASN
43
A
ALA
44
n
44
ALA
44
A
PHE
45
n
45
PHE
45
A
ASP
46
n
46
ASP
46
A
GLY
47
n
47
GLY
47
A
ASN
48
n
48
ASN
48
A
ALA
49
n
49
ALA
49
A
CYS
50
n
50
CYS
50
A
LEU
51
n
51
LEU
51
A
LYS
52
n
52
LYS
52
A
ILE
53
n
53
ILE
53
A
PHE
54
n
54
PHE
54
A
GLN
55
n
55
GLN
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
ASN
58
n
58
ASN
58
A
ARG
59
n
59
ARG
59
A
PRO
60
n
60
PRO
60
A
VAL
61
n
61
VAL
61
A
ASP
62
n
62
ASP
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
LEU
65
n
65
LEU
65
A
ILE
66
n
66
ILE
66
A
VAL
67
n
67
VAL
67
A
HIS
68
n
68
HIS
68
A
ILE
69
n
69
ILE
69
A
ALA
70
n
70
ALA
70
A
ASP
71
n
71
ASP
71
A
PHE
72
n
72
PHE
72
A
ASN
73
n
73
ASN
73
A
GLN
74
n
74
GLN
74
A
LEU
75
n
75
LEU
75
A
PHE
76
n
76
PHE
76
A
GLU
77
n
77
GLU
77
A
VAL
78
n
78
VAL
78
A
ALA
79
n
79
ALA
79
A
LYS
80
n
80
LYS
80
A
ASP
81
n
81
ASP
81
A
ILE
82
n
82
ILE
82
A
PRO
83
n
83
PRO
83
A
ASP
84
n
84
ASP
84
A
LYS
85
n
85
LYS
85
A
VAL
86
n
86
VAL
86
A
LEU
87
n
87
LEU
87
A
GLU
88
n
88
GLU
88
A
ILE
89
n
89
ILE
89
A
ALA
90
n
90
ALA
90
A
GLN
91
n
91
GLN
91
A
ILE
92
n
92
ILE
92
A
VAL
93
n
93
VAL
93
A
TRP
94
n
94
TRP
94
A
PRO
95
n
95
PRO
95
A
GLY
96
n
96
GLY
96
A
PRO
97
n
97
PRO
97
A
LEU
98
n
98
LEU
98
A
THR
99
n
99
THR
99
A
PHE
100
n
100
PHE
100
A
VAL
101
n
101
VAL
101
A
LEU
102
n
102
LEU
102
A
LYS
103
n
103
LYS
103
A
LYS
104
n
104
LYS
104
A
THR
105
n
105
THR
105
A
GLU
106
n
106
GLU
106
A
ARG
107
n
107
ARG
107
A
VAL
108
n
108
VAL
108
A
PRO
109
n
109
PRO
109
A
LYS
110
n
110
LYS
110
A
GLU
111
n
111
GLU
111
A
VAL
112
n
112
VAL
112
A
THR
113
n
113
THR
113
A
ALA
114
n
114
ALA
114
A
GLY
115
n
115
GLY
115
A
LEU
116
n
116
LEU
116
A
ASP
117
n
117
ASP
117
A
THR
118
n
118
THR
118
A
VAL
119
n
119
VAL
119
A
ALA
120
n
120
ALA
120
A
VAL
121
n
121
VAL
121
A
ARG
122
n
122
ARG
122
A
MSE
123
n
123
MSE
123
A
PRO
124
n
124
PRO
124
A
ALA
125
n
125
ALA
125
A
HIS
126
n
126
HIS
126
A
PRO
127
n
127
PRO
127
A
ILE
128
n
128
ILE
128
A
ALA
129
n
129
ALA
129
A
LEU
130
n
130
LEU
130
A
GLN
131
n
131
GLN
131
A
LEU
132
n
132
LEU
132
A
ILE
133
n
133
ILE
133
A
ARG
134
n
134
ARG
134
A
GLU
135
n
135
GLU
135
A
SER
136
n
136
SER
136
A
GLY
137
n
137
GLY
137
A
VAL
138
n
138
VAL
138
A
PRO
139
n
139
PRO
139
A
ILE
140
n
140
ILE
140
A
ALA
141
n
141
ALA
141
A
ALA
142
n
142
ALA
142
A
PRO
143
n
143
PRO
143
A
SER
144
n
144
SER
144
A
ALA
145
n
145
ALA
145
A
ASN
146
n
146
ASN
146
A
LEU
147
n
147
LEU
147
A
ALA
148
n
148
ALA
148
A
THR
149
n
149
THR
149
A
ARG
150
n
150
ARG
150
A
PRO
151
n
151
PRO
151
A
SER
152
n
152
SER
152
A
PRO
153
n
153
PRO
153
A
THR
154
n
154
THR
154
A
LYS
155
n
155
LYS
155
A
ALA
156
n
156
ALA
156
A
GLU
157
n
157
GLU
157
A
ASP
158
n
158
ASP
158
A
VAL
159
n
159
VAL
159
A
ILE
160
n
160
ILE
160
A
VAL
161
n
161
VAL
161
A
ASP
162
n
162
ASP
162
A
LEU
163
n
163
LEU
163
A
ASN
164
n
164
ASN
164
A
GLY
165
n
165
GLY
165
A
ARG
166
n
166
ARG
166
A
VAL
167
n
167
VAL
167
A
ASP
168
n
168
ASP
168
A
VAL
169
n
169
VAL
169
A
ILE
170
n
170
ILE
170
A
ILE
171
n
171
ILE
171
A
ASP
172
n
172
ASP
172
A
GLY
173
n
173
GLY
173
A
GLY
174
n
174
GLY
174
A
HIS
175
n
175
HIS
175
A
THR
176
n
176
THR
176
A
PHE
177
n
177
PHE
177
A
PHE
178
n
178
PHE
178
A
GLY
179
n
179
GLY
179
A
VAL
180
n
180
VAL
180
A
GLU
181
n
181
GLU
181
A
SER
182
n
182
SER
182
A
THR
183
n
183
THR
183
A
ILE
184
n
184
ILE
184
A
ILE
185
n
185
ILE
185
A
ASN
186
n
186
ASN
186
A
VAL
187
n
187
VAL
187
A
THR
188
n
188
THR
188
A
VAL
189
n
189
VAL
189
A
GLU
190
n
190
GLU
190
A
n
191
191
A
PRO
192
n
192
PRO
192
A
VAL
193
n
193
VAL
193
A
LEU
194
n
194
LEU
194
A
LEU
195
n
195
LEU
195
A
ARG
196
n
196
ARG
196
A
PRO
197
n
197
PRO
197
A
GLY
198
n
198
GLY
198
A
PRO
199
n
199
PRO
199
A
PHE
200
n
200
PHE
200
A
THR
201
n
201
THR
201
A
ILE
202
n
202
ILE
202
A
GLU
203
n
203
GLU
203
A
GLU
204
n
204
GLU
204
A
LEU
205
n
205
LEU
205
A
LYS
206
n
206
LYS
206
A
LYS
207
n
207
LYS
207
A
LEU
208
n
208
LEU
208
A
PHE
209
n
209
PHE
209
A
GLY
210
n
210
GLY
210
A
GLU
211
n
211
GLU
211
A
ILE
212
n
212
ILE
212
A
VAL
213
n
213
VAL
213
A
ILE
214
n
214
ILE
214
A
n
215
215
A
n
216
216
A
n
217
217
A
n
218
218
A
n
219
219
A
n
220
220
A
n
221
221
A
n
222
222
A
n
223
223
A
n
224
224
A
n
225
225
A
n
226
226
A
n
227
227
A
n
228
228
A
n
229
229
A
n
230
230
A
n
231
231
A
n
232
232
A
n
233
233
A
TYR
234
n
234
TYR
234
A
LYS
235
n
235
LYS
235
A
HIS
236
n
236
HIS
236
A
TYR
237
n
237
TYR
237
A
ALA
238
n
238
ALA
238
A
PRO
239
n
239
PRO
239
A
ASN
240
n
240
ASN
240
A
THR
241
n
241
THR
241
A
ARG
242
n
242
ARG
242
A
LEU
243
n
243
LEU
243
A
LEU
244
n
244
LEU
244
A
LEU
245
n
245
LEU
245
A
VAL
246
n
246
VAL
246
A
GLU
247
n
247
GLU
247
A
ASN
248
n
248
ASN
248
A
ARG
249
n
249
ARG
249
A
ASN
250
n
250
ASN
250
A
ILE
251
n
251
ILE
251
A
PHE
252
n
252
PHE
252
A
LYS
253
n
253
LYS
253
A
ASP
254
n
254
ASP
254
A
VAL
255
n
255
VAL
255
A
VAL
256
n
256
VAL
256
A
SER
257
n
257
SER
257
A
LEU
258
n
258
LEU
258
A
LEU
259
n
259
LEU
259
A
SER
260
n
260
SER
260
A
LYS
261
n
261
LYS
261
A
LYS
262
n
262
LYS
262
A
TYR
263
n
263
TYR
263
A
LYS
264
n
264
LYS
264
A
VAL
265
n
265
VAL
265
A
ALA
266
n
266
ALA
266
A
LEU
267
n
267
LEU
267
A
LEU
268
n
268
LEU
268
A
ILE
269
n
269
ILE
269
A
PRO
270
n
270
PRO
270
A
LYS
271
n
271
LYS
271
A
GLU
272
n
272
GLU
272
A
LEU
273
n
273
LEU
273
A
SER
274
n
274
SER
274
A
LYS
275
n
275
LYS
275
A
GLU
276
n
276
GLU
276
A
PHE
277
n
277
PHE
277
A
GLU
278
n
278
GLU
278
A
GLY
279
n
279
GLY
279
A
LEU
280
n
280
LEU
280
A
GLN
281
n
281
GLN
281
A
GLN
282
n
282
GLN
282
A
ILE
283
n
283
ILE
283
A
ILE
284
n
284
ILE
284
A
LEU
285
n
285
LEU
285
A
GLY
286
n
286
GLY
286
A
SER
287
n
287
SER
287
A
ASP
288
n
288
ASP
288
A
GLU
289
n
289
GLU
289
A
ASN
290
n
290
ASN
290
A
LEU
291
n
291
LEU
291
A
TYR
292
n
292
TYR
292
A
GLU
293
n
293
GLU
293
A
VAL
294
n
294
VAL
294
A
ALA
295
n
295
ALA
295
A
ARG
296
n
296
ARG
296
A
ASN
297
n
297
ASN
297
A
LEU
298
n
298
LEU
298
A
PHE
299
n
299
PHE
299
A
ASP
300
n
300
ASP
300
A
SER
301
n
301
SER
301
A
PHE
302
n
302
PHE
302
A
ARG
303
n
303
ARG
303
A
GLU
304
n
304
GLU
304
A
LEU
305
n
305
LEU
305
A
ASP
306
n
306
ASP
306
A
LYS
307
n
307
LYS
307
A
LEU
308
n
308
LEU
308
A
ASN
309
n
309
ASN
309
A
VAL
310
n
310
VAL
310
A
ASP
311
n
311
ASP
311
A
LEU
312
n
312
LEU
312
A
GLY
313
n
313
GLY
313
A
ILE
314
n
314
ILE
314
A
MSE
315
n
315
MSE
315
A
ILE
316
n
316
ILE
316
A
GLY
317
n
317
GLY
317
A
PHE
318
n
318
PHE
318
A
PRO
319
n
319
PRO
319
A
GLU
320
n
320
GLU
320
A
ARG
321
n
321
ARG
321
A
GLY
322
n
322
GLY
322
A
ILE
323
n
323
ILE
323
A
GLY
324
n
324
GLY
324
A
PHE
325
n
325
PHE
325
A
ALA
326
n
326
ALA
326
A
ILE
327
n
327
ILE
327
A
MSE
328
n
328
MSE
328
A
ASN
329
n
329
ASN
329
A
ARG
330
n
330
ARG
330
A
ALA
331
n
331
ALA
331
A
ARG
332
n
332
ARG
332
A
LYS
333
n
333
LYS
333
A
ALA
334
n
334
ALA
334
A
SER
335
n
335
SER
335
A
GLY
336
n
336
GLY
336
A
PHE
337
n
337
PHE
337
A
SER
338
n
338
SER
338
A
ILE
339
n
339
ILE
339
A
ILE
340
n
340
ILE
340
A
LYS
341
n
341
LYS
341
A
ALA
342
n
342
ALA
342
A
ILE
343
n
343
ILE
343
A
SER
344
n
344
SER
344
A
ASP
345
n
345
ASP
345
A
VAL
346
n
346
VAL
346
A
TYR
347
n
347
TYR
347
A
LYS
348
n
348
LYS
348
A
TYR
349
n
349
TYR
349
A
VAL
350
n
350
VAL
350
A
ASN
351
n
351
ASN
351
A
n
352
352
A
author_defined_assembly
1
monomeric
A
MSE
123
SELENOMETHIONINE
A
MSE
123
MET
A
MSE
315
SELENOMETHIONINE
A
MSE
315
MET
A
MSE
328
SELENOMETHIONINE
A
MSE
328
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
5
A
N
ILE
5
A
O
ILE
170
A
O
ILE
170
A
O
VAL
169
A
O
VAL
169
A
N
ALA
31
A
N
ALA
31
A
N
PHE
32
A
N
PHE
32
A
O
GLY
39
A
O
GLY
39
A
N
ALA
42
A
N
ALA
42
A
O
ALA
141
A
O
ALA
141
A
O
ILE
140
A
O
ILE
140
A
N
HIS
68
A
N
HIS
68
A
N
VAL
67
A
N
VAL
67
A
O
ALA
120
A
O
ALA
120
A
O
VAL
119
A
O
VAL
119
A
N
LEU
102
A
N
LEU
102
A
O
LYS
103
A
O
LYS
103
A
N
LYS
80
A
N
LYS
80
A
N
ILE
5
A
N
ILE
5
A
O
ILE
170
A
O
ILE
170
A
O
VAL
169
A
O
VAL
169
A
N
ALA
31
A
N
ALA
31
A
N
PHE
32
A
N
PHE
32
A
O
GLY
39
A
O
GLY
39
A
N
ALA
42
A
N
ALA
42
A
O
ALA
141
A
O
ALA
141
A
O
ILE
140
A
O
ILE
140
A
N
HIS
68
A
N
HIS
68
A
N
VAL
67
A
N
VAL
67
A
O
ALA
120
A
O
ALA
120
A
O
VAL
119
A
O
VAL
119
A
N
LEU
102
A
N
LEU
102
A
N
THR
99
A
N
THR
99
A
O
THR
183
A
O
THR
183
A
N
ASN
186
A
N
ASN
186
A
O
VAL
193
A
O
VAL
193
A
O
ILE
283
A
O
ILE
283
A
N
LEU
267
A
N
LEU
267
A
N
ALA
266
A
N
ALA
266
A
O
ILE
314
A
O
ILE
314
A
O
MSE
315
A
O
MSE
315
A
N
VAL
246
A
N
VAL
246
A
N
LEU
245
A
N
LEU
245
A
O
ILE
340
A
O
ILE
340
1
A
CG
GLU
190
A
CG
GLU
190
1
Y
1
A
CD
GLU
190
A
CD
GLU
190
1
Y
1
A
OE1
GLU
190
A
OE1
GLU
190
1
Y
1
A
OE2
GLU
190
A
OE2
GLU
190
1
Y
1
A
CG
TYR
234
A
CG
TYR
234
1
Y
1
A
CD1
TYR
234
A
CD1
TYR
234
1
Y
1
A
CD2
TYR
234
A
CD2
TYR
234
1
Y
1
A
CE1
TYR
234
A
CE1
TYR
234
1
Y
1
A
CE2
TYR
234
A
CE2
TYR
234
1
Y
1
A
CZ
TYR
234
A
CZ
TYR
234
1
Y
1
A
OH
TYR
234
A
OH
TYR
234
1
Y
1
A
MSE
1
A
MSE
1
1
Y
1
A
PRO
191
A
PRO
191
1
Y
1
A
PRO
215
A
PRO
215
1
Y
1
A
GLU
216
A
GLU
216
1
Y
1
A
PHE
217
A
PHE
217
1
Y
1
A
ALA
218
A
ALA
218
1
Y
1
A
GLN
219
A
GLN
219
1
Y
1
A
GLY
220
A
GLY
220
1
Y
1
A
LYS
221
A
LYS
221
1
Y
1
A
LYS
222
A
LYS
222
1
Y
1
A
GLU
223
A
GLU
223
1
Y
1
A
ALA
224
A
ALA
224
1
Y
1
A
GLU
225
A
GLU
225
1
Y
1
A
ILE
226
A
ILE
226
1
Y
1
A
ALA
227
A
ALA
227
1
Y
1
A
LEU
228
A
LEU
228
1
Y
1
A
ALA
229
A
ALA
229
1
Y
1
A
PRO
230
A
PRO
230
1
Y
1
A
GLY
231
A
GLY
231
1
Y
1
A
MSE
232
A
MSE
232
1
Y
1
A
LYS
233
A
LYS
233
1
Y
1
A
ILE
352
A
ILE
352
1
Y
1
A
THR
36
-98.28
-80.79
1
A
PRO
97
-77.38
45.78
1
A
ALA
145
-90.45
41.01
1
A
ALA
148
-29.89
-57.07
1
A
ASN
290
-150.97
88.02
1
A
ASN
309
-112.57
79.13
1
A
GLU
320
-95.45
59.03
1
A
VAL
350
171.07
151.54
protein_rep.param
protein.top
water_rep.param
water.top
ion.param
ion.top
amp_prodrug.param
amp_prodrug.top
19.6
0.00
0.00
0.00
0.24
0.00
-0.24
0.233
0.004
0.208
0.211
0.208
1.80
36.09
3249
32611
10.0
99.5
RANDOM
3041542.67
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
44.22
0.39543
0.23
0.20
5.00
0.13
0.07
1.80
36.09
180
2768
24
0
2564
0.005
1.3
23.1
0.86
1.19
1.50
1.78
2.00
2.01
2.00
2.97
2.50
0.257
0.011
0.216
1.91
538
4777
5315
6
10.1
98.7
14.9
1.8
50
2EQA
32701
32701
0.051
1
52.47
6.9
99.9
0.139
1.8
1.86
12.1
3212
7.2
100
refinement
CNS
1.1
data collection
BSS
data reduction
HKL-2000
data scaling
HKL-2000
phasing
SOLVE
Crystal Structure of the hypothetical Sua5 protein from Sulfolobus tokodaii
1
N
N
2
N
N
3
N
N
4
N
N
A
GLU
13
A
GLU
13
HELX_P
A
ASN
26
A
ASN
26
1
1
14
A
ASP
46
A
ASP
46
HELX_P
A
ASN
58
A
ASN
58
1
2
13
A
ASP
71
A
ASP
71
HELX_P
A
VAL
78
A
VAL
78
1
3
8
A
PRO
83
A
PRO
83
HELX_P
A
TRP
94
A
TRP
94
1
4
12
A
PRO
109
A
PRO
109
HELX_P
A
ALA
114
A
ALA
114
1
5
6
A
HIS
126
A
HIS
126
HELX_P
A
GLY
137
A
GLY
137
1
6
12
A
LYS
155
A
LYS
155
HELX_P
A
ASN
164
A
ASN
164
1
7
10
A
THR
201
A
THR
201
HELX_P
A
PHE
209
A
PHE
209
1
8
9
A
ASN
248
A
ASN
248
HELX_P
A
ASN
250
A
ASN
250
5
9
3
A
ILE
251
A
ILE
251
HELX_P
A
SER
260
A
SER
260
1
10
10
A
GLU
272
A
GLU
272
HELX_P
A
GLU
278
A
GLU
278
5
11
7
A
ASN
290
A
ASN
290
HELX_P
A
LEU
308
A
LEU
308
1
12
19
A
ILE
323
A
ILE
323
HELX_P
A
SER
335
A
SER
335
1
13
13
A
ALA
342
A
ALA
342
HELX_P
A
VAL
350
A
VAL
350
5
14
9
RNA BINDING PROTEIN
YrdC/RibB fold, YrdC domain, Sua5 domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, RNA BINDING PROTEIN
A
TRP
94
A
TRP
94
1
A
PRO
95
A
PRO
95
-0.27
A
ALA
238
A
ALA
238
1
A
PRO
239
A
PRO
239
0.44
Q970S6_SULTO
UNP
1
1
Q970S6
MTQIIKIDPLNPEIDKIKIAADVIRNGGTVAFPTETVYGLGANAFDGNACLKIFQAKNRPVDNPLIVHIADFNQLFEVAK
DIPDKVLEIAQIVWPGPLTFVLKKTERVPKEVTAGLDTVAVRMPAHPIALQLIRESGVPIAAPSANLATRPSPTKAEDVI
VDLNGRVDVIIDGGHTFFGVESTIINVTVEPPVLLRPGPFTIEELKKLFGEIVIPEFAQGKKEAEIALAPGMKYKHYAPN
TRLLLVENRNIFKDVVSLLSKKYKVALLIPKELSKEFEGLQQIILGSDENLYEVARNLFDSFRELDKLNVDLGIMIGFPE
RGIGFAIMNRARKASGFSIIKAISDVYKYVNI
1
352
2EQA
1
352
Q970S6
A
1
1
352
9
10
5
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
parallel
anti-parallel
parallel
parallel
parallel
parallel
A
GLN
3
A
GLN
3
A
LYS
6
A
LYS
6
A
VAL
169
A
VAL
169
A
ASP
172
A
ASP
172
A
VAL
30
A
VAL
30
A
PHE
32
A
PHE
32
A
GLY
39
A
GLY
39
A
ASN
43
A
ASN
43
A
ILE
140
A
ILE
140
A
ALA
142
A
ALA
142
A
ILE
66
A
ILE
66
A
HIS
68
A
HIS
68
A
THR
118
A
THR
118
A
ARG
122
A
ARG
122
A
LEU
98
A
LEU
98
A
LYS
104
A
LYS
104
A
ALA
79
A
ALA
79
A
LYS
80
A
LYS
80
A
GLN
3
A
GLN
3
A
LYS
6
A
LYS
6
A
VAL
169
A
VAL
169
A
ASP
172
A
ASP
172
A
VAL
30
A
VAL
30
A
PHE
32
A
PHE
32
A
GLY
39
A
GLY
39
A
ASN
43
A
ASN
43
A
ILE
140
A
ILE
140
A
ALA
142
A
ALA
142
A
ILE
66
A
ILE
66
A
HIS
68
A
HIS
68
A
THR
118
A
THR
118
A
ARG
122
A
ARG
122
A
LEU
98
A
LEU
98
A
LYS
104
A
LYS
104
A
THR
183
A
THR
183
A
ASN
186
A
ASN
186
A
VAL
193
A
VAL
193
A
ARG
196
A
ARG
196
A
GLN
281
A
GLN
281
A
GLY
286
A
GLY
286
A
VAL
265
A
VAL
265
A
PRO
270
A
PRO
270
A
LEU
312
A
LEU
312
A
ILE
316
A
ILE
316
A
ARG
242
A
ARG
242
A
VAL
246
A
VAL
246
A
ILE
339
A
ILE
339
A
ILE
340
A
ILE
340
BINDING SITE FOR RESIDUE MG A 2001
A
MG
2001
Software
6
BINDING SITE FOR RESIDUE AMP A 1379
A
AMP
1379
Software
16
A
SER
144
A
SER
144
6
1_555
A
AMP
1379
C
AMP
6
1_555
A
HOH
2008
D
HOH
6
1_555
A
HOH
2024
D
HOH
6
1_555
A
HOH
2033
D
HOH
6
1_555
A
HOH
2154
D
HOH
6
1_555
A
ARG
59
A
ARG
59
16
1_555
A
ASN
63
A
ASN
63
16
1_555
A
PRO
64
A
PRO
64
16
1_555
A
LEU
65
A
LEU
65
16
1_555
A
ILE
66
A
ILE
66
16
1_555
A
THR
118
A
THR
118
16
1_555
A
ALA
120
A
ALA
120
16
1_555
A
PRO
143
A
PRO
143
16
1_555
A
SER
144
A
SER
144
16
1_555
A
LEU
195
A
LEU
195
16
1_555
A
ARG
196
A
ARG
196
16
1_555
A
MG
2001
B
MG
16
1_555
A
HOH
2003
D
HOH
16
1_555
A
HOH
2033
D
HOH
16
1_555
A
HOH
2103
D
HOH
16
1_555
A
HOH
2173
D
HOH
16
1_555
21
C 2 2 2