1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 Tanabe, W. Suzuki, S. Muto, Y. Inoue, M. Kigawa, T. Terada, T. Shirouzu, M. Yokoyama, S. RIKEN Structural Genomics/Proteomics Initiative (RSGI) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be Published 0353 Solution structure of the ARID domain of Jarid1b protein 10.2210/pdb2eqy/pdb pdb_00002eqy 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 13720.741 Jumonji, AT rich interactive domain 1B ARID domain 1 man polymer Rbp2 like no no GSSGSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKA VGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSDTKDKEY GSSGSSGEAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKA VGSHIRGHYERILNPYNLFLSGDSLRCLQKPNLTSDTKDKEY A mmt007003997.1 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n house mouse Mus sample Cell-free protein synthesis Jarid1b 10090 Mus musculus Plasmid P060821-07 RIKEN Structural Genomics/Proteomics Initiative RSGI NPPSFA, National Project on Protein Structural and Functional Analyses database_2 pdbx_nmr_software pdbx_nmr_spectrometer pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Data collection Database references Derived calculations 1 0 2007-10-02 1 1 2011-07-13 1 2 2022-03-09 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _pdbx_nmr_spectrometer.model _struct_ref_seq_dif.details Y PDBJ Y PDBJ 2007-03-30 REL REL structures with the least restraint violations, structures with the lowest energy, target function 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 120mM 7.0 ambient 298 K torsion angle dyanamics, simulated annealing 1 lowest energy 0.77mM 13C-15N PROTEIN; 20mM d-Tris-HCl(pH7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O Bruker collection XwinNMR 3.5 Delaglio, F. processing NMRPipe 20060702 Johnson, B.A. data analysis NMRView 5.0.4 Kobayashi, N. data analysis KUJIRA 0.9820 Guntert, P. structure solution CYANA 2.0.17 Guntert, P. refinement CYANA 2.0.17 800 Bruker AVANCE GLY 87 n 1 GLY 87 A SER 88 n 2 SER 88 A SER 89 n 3 SER 89 A GLY 90 n 4 GLY 90 A SER 91 n 5 SER 91 A SER 92 n 6 SER 92 A GLY 93 n 7 GLY 93 A GLU 94 n 8 GLU 94 A ALA 95 n 9 ALA 95 A GLN 96 n 10 GLN 96 A THR 97 n 11 THR 97 A ARG 98 n 12 ARG 98 A VAL 99 n 13 VAL 99 A LYS 100 n 14 LYS 100 A LEU 101 n 15 LEU 101 A ASN 102 n 16 ASN 102 A PHE 103 n 17 PHE 103 A LEU 104 n 18 LEU 104 A ASP 105 n 19 ASP 105 A GLN 106 n 20 GLN 106 A ILE 107 n 21 ILE 107 A ALA 108 n 22 ALA 108 A LYS 109 n 23 LYS 109 A TYR 110 n 24 TYR 110 A TRP 111 n 25 TRP 111 A GLU 112 n 26 GLU 112 A LEU 113 n 27 LEU 113 A GLN 114 n 28 GLN 114 A GLY 115 n 29 GLY 115 A SER 116 n 30 SER 116 A THR 117 n 31 THR 117 A LEU 118 n 32 LEU 118 A LYS 119 n 33 LYS 119 A ILE 120 n 34 ILE 120 A PRO 121 n 35 PRO 121 A HIS 122 n 36 HIS 122 A VAL 123 n 37 VAL 123 A GLU 124 n 38 GLU 124 A ARG 125 n 39 ARG 125 A LYS 126 n 40 LYS 126 A ILE 127 n 41 ILE 127 A LEU 128 n 42 LEU 128 A ASP 129 n 43 ASP 129 A LEU 130 n 44 LEU 130 A PHE 131 n 45 PHE 131 A GLN 132 n 46 GLN 132 A LEU 133 n 47 LEU 133 A ASN 134 n 48 ASN 134 A LYS 135 n 49 LYS 135 A LEU 136 n 50 LEU 136 A VAL 137 n 51 VAL 137 A ALA 138 n 52 ALA 138 A GLU 139 n 53 GLU 139 A GLU 140 n 54 GLU 140 A GLY 141 n 55 GLY 141 A GLY 142 n 56 GLY 142 A PHE 143 n 57 PHE 143 A ALA 144 n 58 ALA 144 A VAL 145 n 59 VAL 145 A VAL 146 n 60 VAL 146 A CYS 147 n 61 CYS 147 A LYS 148 n 62 LYS 148 A ASP 149 n 63 ASP 149 A ARG 150 n 64 ARG 150 A LYS 151 n 65 LYS 151 A TRP 152 n 66 TRP 152 A THR 153 n 67 THR 153 A LYS 154 n 68 LYS 154 A ILE 155 n 69 ILE 155 A ALA 156 n 70 ALA 156 A THR 157 n 71 THR 157 A LYS 158 n 72 LYS 158 A MET 159 n 73 MET 159 A GLY 160 n 74 GLY 160 A PHE 161 n 75 PHE 161 A ALA 162 n 76 ALA 162 A PRO 163 n 77 PRO 163 A GLY 164 n 78 GLY 164 A LYS 165 n 79 LYS 165 A ALA 166 n 80 ALA 166 A VAL 167 n 81 VAL 167 A GLY 168 n 82 GLY 168 A SER 169 n 83 SER 169 A HIS 170 n 84 HIS 170 A ILE 171 n 85 ILE 171 A ARG 172 n 86 ARG 172 A GLY 173 n 87 GLY 173 A HIS 174 n 88 HIS 174 A TYR 175 n 89 TYR 175 A GLU 176 n 90 GLU 176 A ARG 177 n 91 ARG 177 A ILE 178 n 92 ILE 178 A LEU 179 n 93 LEU 179 A ASN 180 n 94 ASN 180 A PRO 181 n 95 PRO 181 A TYR 182 n 96 TYR 182 A ASN 183 n 97 ASN 183 A LEU 184 n 98 LEU 184 A PHE 185 n 99 PHE 185 A LEU 186 n 100 LEU 186 A SER 187 n 101 SER 187 A GLY 188 n 102 GLY 188 A ASP 189 n 103 ASP 189 A SER 190 n 104 SER 190 A LEU 191 n 105 LEU 191 A ARG 192 n 106 ARG 192 A CYS 193 n 107 CYS 193 A LEU 194 n 108 LEU 194 A GLN 195 n 109 GLN 195 A LYS 196 n 110 LYS 196 A PRO 197 n 111 PRO 197 A ASN 198 n 112 ASN 198 A LEU 199 n 113 LEU 199 A THR 200 n 114 THR 200 A SER 201 n 115 SER 201 A ASP 202 n 116 ASP 202 A THR 203 n 117 THR 203 A LYS 204 n 118 LYS 204 A ASP 205 n 119 ASP 205 A LYS 206 n 120 LYS 206 A GLU 207 n 121 GLU 207 A TYR 208 n 122 TYR 208 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A SER 92 -171.35 144.75 1 A GLN 96 -128.96 -58.32 1 A LEU 133 -34.09 -71.92 1 A ARG 150 35.36 51.48 1 A LYS 151 -86.47 41.91 1 A ILE 155 -55.23 -70.90 1 A PRO 163 -69.75 85.64 1 A LYS 165 -131.44 -46.26 1 A ASP 189 -59.15 101.68 1 A ARG 192 -45.20 101.40 1 A PRO 197 -69.74 -179.69 1 A LEU 199 -34.39 142.25 2 A SER 88 -48.33 160.03 2 A SER 92 -134.14 -51.42 2 A ARG 150 38.38 39.12 2 A LYS 151 -85.46 46.60 2 A PRO 163 -69.73 96.19 2 A ARG 192 -61.28 92.53 2 A LYS 206 -36.34 141.39 3 A GLU 94 -96.17 34.50 3 A LEU 104 -38.23 -27.88 3 A LEU 133 -36.45 -70.16 3 A ARG 150 39.64 52.12 3 A LYS 151 -94.22 42.13 3 A PRO 163 -69.80 88.32 4 A THR 97 -34.16 -36.01 4 A LEU 133 -50.08 -71.76 4 A ARG 150 31.41 47.87 4 A LYS 151 -87.97 37.95 4 A PRO 163 -69.75 93.32 5 A SER 88 -170.34 145.14 5 A SER 92 -37.06 120.46 5 A LEU 104 -36.68 -30.61 5 A LEU 133 -46.94 -70.83 5 A ILE 178 -120.13 -50.35 5 A GLU 207 -66.37 96.45 6 A SER 88 37.85 41.60 6 A LYS 126 -170.25 133.19 6 A LEU 133 -40.79 -70.69 6 A LYS 151 -83.53 43.11 7 A GLN 96 -81.13 46.14 7 A GLU 124 37.79 42.00 7 A LEU 128 -67.31 94.83 7 A LEU 133 -37.93 -72.13 7 A ARG 150 34.38 37.91 7 A LYS 151 -79.74 44.03 7 A PRO 163 -69.79 86.70 7 A ASP 189 -88.97 46.18 7 A ARG 192 -36.91 113.20 7 A LEU 194 -52.68 98.79 8 A ILE 127 -60.68 99.14 8 A LEU 133 -47.91 -72.12 8 A SER 190 -97.97 -61.58 8 A SER 201 -49.33 165.83 8 A GLU 207 -58.27 -178.91 9 A LEU 133 -43.93 -71.48 9 A LYS 151 -96.16 36.29 9 A CYS 193 -43.40 91.08 9 A ASN 198 -53.39 95.64 10 A ALA 95 -107.13 40.77 10 A LEU 133 -35.47 -71.97 10 A ARG 150 34.49 41.32 10 A LYS 151 -86.07 40.59 10 A PRO 163 -69.77 85.73 10 A ILE 178 -120.36 -51.90 10 A GLN 195 -46.40 173.32 11 A SER 88 -38.93 109.73 11 A SER 92 -50.89 173.94 11 A THR 97 -33.79 -34.59 11 A PRO 121 -69.81 -177.21 11 A ASP 129 -56.22 103.28 11 A LEU 133 -38.15 -72.08 11 A LYS 151 -81.92 40.56 11 A ILE 155 -51.80 -72.59 11 A PRO 163 -69.74 84.42 11 A LEU 179 -92.84 35.68 11 A ARG 192 -35.30 117.00 11 A LYS 196 -37.37 141.34 11 A PRO 197 -69.77 -177.34 11 A GLU 207 -37.22 114.30 12 A LEU 104 -39.72 -39.52 12 A TYR 110 -38.54 -26.24 12 A GLU 112 -49.61 -18.41 12 A PRO 121 -69.81 -179.29 12 A ASP 129 -62.70 83.73 12 A LEU 133 -35.68 -71.58 12 A ARG 150 37.62 48.91 12 A LYS 151 -86.87 40.70 12 A PRO 163 -69.76 86.20 12 A ILE 178 -120.10 -51.40 12 A LEU 184 -39.06 -27.11 12 A ASP 189 -47.01 109.97 12 A ASN 198 -48.27 159.40 13 A LEU 133 -50.65 -71.17 13 A LYS 151 -83.42 36.74 13 A PRO 163 -69.76 85.03 13 A LYS 204 -39.35 114.64 13 A ASP 205 -48.63 163.24 14 A SER 92 -44.69 109.66 14 A VAL 146 -65.03 -70.56 14 A LYS 151 -98.25 41.13 14 A PRO 163 -69.76 94.78 14 A ILE 178 -120.11 -52.39 14 A ASP 202 -54.82 107.71 15 A LEU 104 -38.40 -32.01 15 A LEU 133 -44.43 -71.79 15 A ARG 150 35.72 52.29 15 A PRO 163 -69.73 85.20 15 A ILE 178 -120.09 -51.73 15 A PRO 197 -69.79 -171.20 15 A GLU 207 -56.13 -178.69 16 A TYR 110 -38.79 -25.84 16 A LEU 128 -66.80 93.89 16 A LEU 133 -49.63 -72.12 16 A PRO 163 -69.70 88.46 16 A ARG 192 -69.01 96.13 16 A CYS 193 -40.22 154.99 16 A LEU 194 -38.74 119.37 16 A LYS 196 -43.89 156.09 16 A PRO 197 -69.76 86.72 16 A LEU 199 -65.51 76.32 16 A SER 201 -68.19 78.67 17 A GLU 94 -106.97 41.29 17 A THR 97 -92.20 -67.87 17 A GLU 112 -38.31 -36.01 17 A ARG 150 35.02 45.17 17 A LYS 151 -93.36 47.92 17 A ILE 178 -120.01 -51.39 17 A LEU 199 -36.31 119.61 18 A GLU 94 -86.96 39.09 18 A LEU 104 -37.03 -37.58 18 A LEU 133 -52.66 -71.18 18 A LYS 151 -89.38 46.79 18 A PRO 163 -69.80 90.02 18 A LEU 179 -91.45 33.75 18 A TYR 182 -37.74 -36.80 18 A PRO 197 -69.82 89.06 19 A ARG 150 34.49 38.09 19 A LYS 151 -76.90 47.56 19 A ARG 192 -35.91 141.62 19 A GLN 195 -43.97 105.40 20 A ALA 95 -125.78 -53.77 20 A GLN 96 -91.32 45.08 20 A ARG 150 38.86 48.67 20 A LYS 151 -84.51 38.49 20 A PRO 163 -69.73 85.39 20 A LYS 165 -37.36 -33.52 20 A ASP 189 -34.44 109.98 Solution structure of the ARID domain of Jarid1b protein 1 N N A GLN 96 A GLN 10 HELX_P A GLY 115 A GLY 29 1 1 20 A ASP 129 A ASP 43 HELX_P A GLY 141 A GLY 55 1 2 13 A GLY 142 A GLY 56 HELX_P A ASP 149 A ASP 63 1 3 8 A LYS 151 A LYS 65 HELX_P A MET 159 A MET 73 1 4 9 A LYS 165 A LYS 79 HELX_P A ILE 178 A ILE 92 1 5 14 A ILE 178 A ILE 92 HELX_P A GLY 188 A GLY 102 1 6 11 DNA BINDING PROTEIN ARID domain, Structural Genomics, NPPSFA, National Project on Protein Structural and Functional Analyses, RIKEN Structural Genomics/Proteomics Initiative, RSGI, DNA BINDING PROTEIN Q80Y84_MOUSE UNP 1 94 Q80Y84 EAQTRVKLNFLDQIAKYWELQGSTLKIPHVERKILDLFQLNKLVAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRG HYERILNPYNLFLSGDSLRCLQKPNLTSDTKDKEY 94 208 2EQY 94 208 Q80Y84 A 1 8 122 1 expression tag GLY 87 2EQY A Q80Y84 UNP 1 1 expression tag SER 88 2EQY A Q80Y84 UNP 2 1 expression tag SER 89 2EQY A Q80Y84 UNP 3 1 expression tag GLY 90 2EQY A Q80Y84 UNP 4 1 expression tag SER 91 2EQY A Q80Y84 UNP 5 1 expression tag SER 92 2EQY A Q80Y84 UNP 6 1 expression tag GLY 93 2EQY A Q80Y84 UNP 7