0.01243
0.00000
0.00000
0.00000
0.01173
0.00000
0.00000
0.00000
0.01873
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
80.454
85.259
53.397
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C8 H18 N2 O2
174.241
n
N-DIMETHYL-LYSINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of LEMA protein (tm0961) from THERMOTOGA MARITIMA at 2.28 A resolution
10.2210/pdb2etd/pdb
pdb_00002etd
100
1
CCD
2005-09-09
ADSC QUANTUM 315
DOUBLE CRYSTAL SI(111)
MAD
M
x-ray
1
1.0163
1.0
0.9797
1.0
0.9796
1.0
8.2.2
ALS
1.0163, 0.9797, 0.9796
SYNCHROTRON
ALS BEAMLINE 8.2.2
19949.291
lemA protein
1
man
polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
62
nat
water
no
yes
(MSE)GSD(MLY)IHHHHHHLVSLEQEVQE(MLY)YSQIQNQLQRRADLIPNLVETV(MLY)GYAAHE(MLY)EILEEIA
NARA(MLY)LIGA(MLY)TPQESAQADAELSSALSRLLAIAENYPNL(MLY)ADANFRQL(MSE)DELAGTENRIAVARR
DYNEAV(MLY)(MLY)YNTAI(MLY)(MLY)FPGVIFA(MLY)(MSE)FGFEE(MLY)QYFEA(MLY)PGAEEVPEV
(MLY)F
MGSDKIHHHHHHLVSLEQEVQEKYSQIQNQLQRRADLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKTPQESAQADA
ELSSALSRLLAIAENYPNLKADANFRQLMDELAGTENRIAVARRDYNEAVKKYNTAIKKFPGVIFAKMFGFEEKQYFEAK
PGAEEVPEVKF
A
358514
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Thermotoga
Thermotoga maritima
MSB8
Escherichia
sample
tm0961
243274
Thermotoga maritima
562
Escherichia coli
Plasmid
HK100
1
2.29
46.39
VAPOR DIFFUSION,SITTING DROP,NANODROP
6.3
0.2M NH4NO3, 20.0% PEG-3350, No Buffer pH 6.3 , VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
pdbx_struct_assembly_auth_evidence
database_2
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Source and taxonomy
Version format compliance
Author supporting evidence
Database references
Derived calculations
1
0
2005-11-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-25
1
4
2023-01-25
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_conn.pdbx_leaving_atom_flag
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2005-10-27
REL
REL
CL
CHLORIDE ION
HOH
water
CL
1
2
CL
CL
1
A
HOH
2
3
HOH
HOH
194
A
HOH
3
3
HOH
HOH
195
A
HOH
4
3
HOH
HOH
196
A
HOH
5
3
HOH
HOH
197
A
HOH
6
3
HOH
HOH
198
A
HOH
7
3
HOH
HOH
199
A
HOH
8
3
HOH
HOH
200
A
HOH
9
3
HOH
HOH
201
A
HOH
10
3
HOH
HOH
202
A
HOH
11
3
HOH
HOH
203
A
HOH
12
3
HOH
HOH
204
A
HOH
13
3
HOH
HOH
205
A
HOH
14
3
HOH
HOH
206
A
HOH
15
3
HOH
HOH
207
A
HOH
16
3
HOH
HOH
208
A
HOH
17
3
HOH
HOH
209
A
HOH
18
3
HOH
HOH
210
A
HOH
19
3
HOH
HOH
211
A
HOH
20
3
HOH
HOH
212
A
HOH
21
3
HOH
HOH
213
A
HOH
22
3
HOH
HOH
214
A
HOH
23
3
HOH
HOH
215
A
HOH
24
3
HOH
HOH
216
A
HOH
25
3
HOH
HOH
217
A
HOH
26
3
HOH
HOH
218
A
HOH
27
3
HOH
HOH
219
A
HOH
28
3
HOH
HOH
220
A
HOH
29
3
HOH
HOH
221
A
HOH
30
3
HOH
HOH
222
A
HOH
31
3
HOH
HOH
223
A
HOH
32
3
HOH
HOH
224
A
HOH
33
3
HOH
HOH
225
A
HOH
34
3
HOH
HOH
226
A
HOH
35
3
HOH
HOH
227
A
HOH
36
3
HOH
HOH
228
A
HOH
37
3
HOH
HOH
229
A
HOH
38
3
HOH
HOH
230
A
HOH
39
3
HOH
HOH
231
A
HOH
40
3
HOH
HOH
232
A
HOH
41
3
HOH
HOH
233
A
HOH
42
3
HOH
HOH
234
A
HOH
43
3
HOH
HOH
235
A
HOH
44
3
HOH
HOH
236
A
HOH
45
3
HOH
HOH
237
A
HOH
46
3
HOH
HOH
238
A
HOH
47
3
HOH
HOH
239
A
HOH
48
3
HOH
HOH
240
A
HOH
49
3
HOH
HOH
241
A
HOH
50
3
HOH
HOH
242
A
HOH
51
3
HOH
HOH
243
A
HOH
52
3
HOH
HOH
244
A
HOH
53
3
HOH
HOH
245
A
HOH
54
3
HOH
HOH
246
A
HOH
55
3
HOH
HOH
247
A
HOH
56
3
HOH
HOH
248
A
HOH
57
3
HOH
HOH
249
A
HOH
58
3
HOH
HOH
250
A
HOH
59
3
HOH
HOH
251
A
HOH
60
3
HOH
HOH
252
A
HOH
61
3
HOH
HOH
253
A
HOH
62
3
HOH
HOH
254
A
HOH
63
3
HOH
HOH
255
A
n
1
-11
A
n
2
-10
A
n
3
-9
A
n
4
-8
A
n
5
-7
A
n
6
-6
A
n
7
-5
A
n
8
-4
A
n
9
-3
A
n
10
-2
A
HIS
-1
n
11
HIS
-1
A
HIS
0
n
12
HIS
0
A
LEU
35
n
13
LEU
35
A
VAL
36
n
14
VAL
36
A
SER
37
n
15
SER
37
A
LEU
38
n
16
LEU
38
A
GLU
39
n
17
GLU
39
A
GLN
40
n
18
GLN
40
A
GLU
41
n
19
GLU
41
A
VAL
42
n
20
VAL
42
A
GLN
43
n
21
GLN
43
A
GLU
44
n
22
GLU
44
A
MLY
45
n
23
MLY
45
A
TYR
46
n
24
TYR
46
A
SER
47
n
25
SER
47
A
GLN
48
n
26
GLN
48
A
ILE
49
n
27
ILE
49
A
GLN
50
n
28
GLN
50
A
ASN
51
n
29
ASN
51
A
GLN
52
n
30
GLN
52
A
LEU
53
n
31
LEU
53
A
GLN
54
n
32
GLN
54
A
ARG
55
n
33
ARG
55
A
ARG
56
n
34
ARG
56
A
ALA
57
n
35
ALA
57
A
ASP
58
n
36
ASP
58
A
LEU
59
n
37
LEU
59
A
ILE
60
n
38
ILE
60
A
PRO
61
n
39
PRO
61
A
ASN
62
n
40
ASN
62
A
LEU
63
n
41
LEU
63
A
VAL
64
n
42
VAL
64
A
GLU
65
n
43
GLU
65
A
THR
66
n
44
THR
66
A
VAL
67
n
45
VAL
67
A
MLY
68
n
46
MLY
68
A
GLY
69
n
47
GLY
69
A
TYR
70
n
48
TYR
70
A
ALA
71
n
49
ALA
71
A
ALA
72
n
50
ALA
72
A
HIS
73
n
51
HIS
73
A
GLU
74
n
52
GLU
74
A
MLY
75
n
53
MLY
75
A
GLU
76
n
54
GLU
76
A
ILE
77
n
55
ILE
77
A
LEU
78
n
56
LEU
78
A
GLU
79
n
57
GLU
79
A
GLU
80
n
58
GLU
80
A
ILE
81
n
59
ILE
81
A
ALA
82
n
60
ALA
82
A
ASN
83
n
61
ASN
83
A
ALA
84
n
62
ALA
84
A
ARG
85
n
63
ARG
85
A
ALA
86
n
64
ALA
86
A
MLY
87
n
65
MLY
87
A
LEU
88
n
66
LEU
88
A
ILE
89
n
67
ILE
89
A
GLY
90
n
68
GLY
90
A
ALA
91
n
69
ALA
91
A
MLY
92
n
70
MLY
92
A
THR
93
n
71
THR
93
A
PRO
94
n
72
PRO
94
A
GLN
95
n
73
GLN
95
A
GLU
96
n
74
GLU
96
A
SER
97
n
75
SER
97
A
ALA
98
n
76
ALA
98
A
GLN
99
n
77
GLN
99
A
ALA
100
n
78
ALA
100
A
ASP
101
n
79
ASP
101
A
ALA
102
n
80
ALA
102
A
GLU
103
n
81
GLU
103
A
LEU
104
n
82
LEU
104
A
SER
105
n
83
SER
105
A
SER
106
n
84
SER
106
A
ALA
107
n
85
ALA
107
A
LEU
108
n
86
LEU
108
A
SER
109
n
87
SER
109
A
ARG
110
n
88
ARG
110
A
LEU
111
n
89
LEU
111
A
LEU
112
n
90
LEU
112
A
ALA
113
n
91
ALA
113
A
ILE
114
n
92
ILE
114
A
ALA
115
n
93
ALA
115
A
GLU
116
n
94
GLU
116
A
ASN
117
n
95
ASN
117
A
TYR
118
n
96
TYR
118
A
PRO
119
n
97
PRO
119
A
ASN
120
n
98
ASN
120
A
LEU
121
n
99
LEU
121
A
MLY
122
n
100
MLY
122
A
ALA
123
n
101
ALA
123
A
ASP
124
n
102
ASP
124
A
ALA
125
n
103
ALA
125
A
ASN
126
n
104
ASN
126
A
PHE
127
n
105
PHE
127
A
ARG
128
n
106
ARG
128
A
GLN
129
n
107
GLN
129
A
LEU
130
n
108
LEU
130
A
MSE
131
n
109
MSE
131
A
ASP
132
n
110
ASP
132
A
GLU
133
n
111
GLU
133
A
LEU
134
n
112
LEU
134
A
ALA
135
n
113
ALA
135
A
GLY
136
n
114
GLY
136
A
THR
137
n
115
THR
137
A
GLU
138
n
116
GLU
138
A
ASN
139
n
117
ASN
139
A
ARG
140
n
118
ARG
140
A
ILE
141
n
119
ILE
141
A
ALA
142
n
120
ALA
142
A
VAL
143
n
121
VAL
143
A
ALA
144
n
122
ALA
144
A
ARG
145
n
123
ARG
145
A
ARG
146
n
124
ARG
146
A
ASP
147
n
125
ASP
147
A
TYR
148
n
126
TYR
148
A
ASN
149
n
127
ASN
149
A
GLU
150
n
128
GLU
150
A
ALA
151
n
129
ALA
151
A
VAL
152
n
130
VAL
152
A
MLY
153
n
131
MLY
153
A
MLY
154
n
132
MLY
154
A
TYR
155
n
133
TYR
155
A
ASN
156
n
134
ASN
156
A
THR
157
n
135
THR
157
A
ALA
158
n
136
ALA
158
A
ILE
159
n
137
ILE
159
A
MLY
160
n
138
MLY
160
A
MLY
161
n
139
MLY
161
A
n
140
162
A
n
141
163
A
n
142
164
A
n
143
165
A
n
144
166
A
n
145
167
A
n
146
168
A
n
147
169
A
n
148
170
A
n
149
171
A
GLY
172
n
150
GLY
172
A
PHE
173
n
151
PHE
173
A
GLU
174
n
152
GLU
174
A
GLU
175
n
153
GLU
175
A
MLY
176
n
154
MLY
176
A
GLN
177
n
155
GLN
177
A
TYR
178
n
156
TYR
178
A
PHE
179
n
157
PHE
179
A
GLU
180
n
158
GLU
180
A
ALA
181
n
159
ALA
181
A
MLY
182
n
160
MLY
182
A
PRO
183
n
161
PRO
183
A
n
162
184
A
n
163
185
A
n
164
186
A
n
165
187
A
n
166
188
A
n
167
189
A
n
168
190
A
n
169
191
A
n
170
192
A
n
171
193
A
3.4018
0.1682
-2.1498
1.0196
-0.8106
6.6168
0.0338
-0.0457
0.2954
0.0509
0.0258
-0.0354
-0.3101
0.1317
-0.0596
-0.1623
-0.0042
-0.0423
-0.2821
0.0024
-0.1240
refined
14.1683
28.8656
53.6444
X-RAY DIFFRACTION
A
-1
A
11
A
183
A
161
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
gel filtration
light scattering
A
MLY
45
N-DIMETHYL-LYSINE
A
MLY
23
LYS
A
MLY
68
N-DIMETHYL-LYSINE
A
MLY
46
LYS
A
MLY
75
N-DIMETHYL-LYSINE
A
MLY
53
LYS
A
MLY
87
N-DIMETHYL-LYSINE
A
MLY
65
LYS
A
MLY
92
N-DIMETHYL-LYSINE
A
MLY
70
LYS
A
MLY
122
N-DIMETHYL-LYSINE
A
MLY
100
LYS
A
MSE
131
SELENOMETHIONINE
A
MSE
109
MET
A
MLY
153
N-DIMETHYL-LYSINE
A
MLY
131
LYS
A
MLY
154
N-DIMETHYL-LYSINE
A
MLY
132
LYS
A
MLY
160
N-DIMETHYL-LYSINE
A
MLY
138
LYS
A
MLY
161
N-DIMETHYL-LYSINE
A
MLY
139
LYS
A
MLY
176
N-DIMETHYL-LYSINE
A
MLY
154
LYS
A
MLY
182
N-DIMETHYL-LYSINE
A
MLY
160
LYS
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
CG
HIS
-1
A
CG
HIS
11
1
Y
1
A
ND1
HIS
-1
A
ND1
HIS
11
1
Y
1
A
CD2
HIS
-1
A
CD2
HIS
11
1
Y
1
A
CE1
HIS
-1
A
CE1
HIS
11
1
Y
1
A
NE2
HIS
-1
A
NE2
HIS
11
1
Y
1
A
CG1
VAL
36
A
CG1
VAL
14
1
Y
1
A
CG2
VAL
36
A
CG2
VAL
14
1
Y
1
A
CD
GLN
43
A
CD
GLN
21
1
Y
1
A
OE1
GLN
43
A
OE1
GLN
21
1
Y
1
A
NE2
GLN
43
A
NE2
GLN
21
1
Y
1
A
CH1
MLY
45
A
CH1
MLY
23
1
Y
1
A
CH2
MLY
45
A
CH2
MLY
23
1
Y
1
A
OE1
GLN
48
A
OE1
GLN
26
1
Y
1
A
CD
GLU
65
A
CD
GLU
43
1
Y
1
A
OE1
GLU
65
A
OE1
GLU
43
1
Y
1
A
OE2
GLU
65
A
OE2
GLU
43
1
Y
1
A
CH1
MLY
68
A
CH1
MLY
46
1
Y
1
A
CH2
MLY
68
A
CH2
MLY
46
1
Y
1
A
CH1
MLY
75
A
CH1
MLY
53
1
Y
1
A
CH2
MLY
75
A
CH2
MLY
53
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
54
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
54
1
Y
1
A
CH1
MLY
87
A
CH1
MLY
65
1
Y
1
A
CH2
MLY
87
A
CH2
MLY
65
1
Y
1
A
CH1
MLY
92
A
CH1
MLY
70
1
Y
1
A
CH2
MLY
92
A
CH2
MLY
70
1
Y
1
A
CH1
MLY
122
A
CH1
MLY
100
1
Y
1
A
CH2
MLY
122
A
CH2
MLY
100
1
Y
1
A
CH1
MLY
153
A
CH1
MLY
131
1
Y
1
A
CH2
MLY
153
A
CH2
MLY
131
1
Y
1
A
CH1
MLY
154
A
CH1
MLY
132
1
Y
1
A
CH2
MLY
154
A
CH2
MLY
132
1
Y
1
A
CH1
MLY
160
A
CH1
MLY
138
1
Y
1
A
CH2
MLY
160
A
CH2
MLY
138
1
Y
1
A
CH1
MLY
161
A
CH1
MLY
139
1
Y
1
A
CH2
MLY
161
A
CH2
MLY
139
1
Y
1
A
CH1
MLY
176
A
CH1
MLY
154
1
Y
1
A
CH2
MLY
176
A
CH2
MLY
154
1
Y
1
A
CD
MLY
182
A
CD
MLY
160
1
Y
1
A
CE
MLY
182
A
CE
MLY
160
1
Y
1
A
NZ
MLY
182
A
NZ
MLY
160
1
Y
1
A
CH1
MLY
182
A
CH1
MLY
160
1
Y
1
A
CH2
MLY
182
A
CH2
MLY
160
1
Y
1
A
MSE
-11
A
MSE
1
1
Y
1
A
GLY
-10
A
GLY
2
1
Y
1
A
SER
-9
A
SER
3
1
Y
1
A
ASP
-8
A
ASP
4
1
Y
1
A
MLY
-7
A
MLY
5
1
Y
1
A
ILE
-6
A
ILE
6
1
Y
1
A
HIS
-5
A
HIS
7
1
Y
1
A
HIS
-4
A
HIS
8
1
Y
1
A
HIS
-3
A
HIS
9
1
Y
1
A
HIS
-2
A
HIS
10
1
Y
1
A
PHE
162
A
PHE
140
1
Y
1
A
PRO
163
A
PRO
141
1
Y
1
A
GLY
164
A
GLY
142
1
Y
1
A
VAL
165
A
VAL
143
1
Y
1
A
ILE
166
A
ILE
144
1
Y
1
A
PHE
167
A
PHE
145
1
Y
1
A
ALA
168
A
ALA
146
1
Y
1
A
MLY
169
A
MLY
147
1
Y
1
A
MSE
170
A
MSE
148
1
Y
1
A
PHE
171
A
PHE
149
1
Y
1
A
GLY
184
A
GLY
162
1
Y
1
A
ALA
185
A
ALA
163
1
Y
1
A
GLU
186
A
GLU
164
1
Y
1
A
GLU
187
A
GLU
165
1
Y
1
A
VAL
188
A
VAL
166
1
Y
1
A
PRO
189
A
PRO
167
1
Y
1
A
GLU
190
A
GLU
168
1
Y
1
A
VAL
191
A
VAL
169
1
Y
1
A
MLY
192
A
MLY
170
1
Y
1
A
PHE
193
A
PHE
171
1
Y
1
A
ALA
71
-150.07
65.88
40.488
-1.660
0.000
0.000
1.780
0.000
-0.110
0.934
0.913
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION
DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE
RESIDUES WAS REDUCED TO 0.7 TO ACCOUNT FOR THE REDUCED SCATTERING POWER
DUE TO PARTIAL S-MET INCORPORATION.
3. THE STRUCTURE WAS NOT MODELED BETWEEN 162-171 BECAUSE THE ELECTRON DENSITY
IN THIS REGION IS DISORDERED.
4. THIS PROTEIN IS REDUCTIVELY METHYLATED. HOWEVER, DENSITY FOR MOST OF THE
METHYL GROUPS ARE NOT OBSERVED, MAYBE DUE TO FLEXIBILITY OR LIMITED RESOLUTION.
0.27
0.216
0.219
2.280
26.70
375
7717
4.600
93.030
13.938
0.175
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MAD
0.318
0.250
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
BABINET MODEL WITH MASK
2.280
26.70
62
1169
1
0
1106
0.016
0.022
1119
0.001
0.020
1023
1.362
1.968
1505
0.835
3.000
2384
5.250
5.000
139
31.773
25.263
57
15.049
15.000
208
24.674
15.000
8
0.076
0.200
168
0.005
0.020
1246
0.001
0.020
210
0.218
0.200
259
0.168
0.200
927
0.182
0.200
540
0.085
0.200
656
0.199
0.200
41
0.181
0.200
9
0.386
0.200
18
0.133
0.200
6
2.243
3.000
735
0.562
3.000
284
3.354
5.000
1116
5.965
8.000
449
8.617
11.000
389
0.391
0.24
2.339
22
568
20
93.210
2.25
30.00
2ETD
8126
0.067
1.030
1
3.500
90.100
0.332
2.25
2.33
549
1.080
1
3.500
62.000
0.177
2.33
2.42
872
1.043
1
3.600
99.900
0.158
2.42
2.53
887
1.060
1
3.600
99.300
0.144
2.53
2.67
894
1.066
1
3.600
99.800
0.112
2.67
2.83
876
1.002
1
3.600
99.300
0.088
2.83
3.05
889
0.996
1
3.600
99.200
0.077
3.05
3.36
876
1.017
1
3.600
98.500
0.078
3.36
3.85
587
0.994
1
3.300
64.900
0.054
3.85
4.84
779
1.039
1
3.500
84.500
0.041
4.84
30.00
917
1.012
1
3.400
94.300
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
Jan. 30, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.601
data reduction
DENZO
data scaling
HKL-2000
phasing
SHELX
phasing
SHARP
refinement
REFMAC
5.2.0005
Crystal structure of a lema protein (tm0961) from thermotoga maritima msb8 at 2.28 A resolution
1
N
N
2
N
N
3
N
N
SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT
SCATTERING SUPPORTS THE ASSIGNMENT OF A MONOMER AS
A BIOLOGICALLY SIGNIFICANT OLIGIMERIZATION STATE.
A
HIS
-1
A
HIS
11
HELX_P
A
ALA
71
A
ALA
49
1
1
39
A
GLU
74
A
GLU
52
HELX_P
A
ALA
91
A
ALA
69
1
2
18
A
THR
93
A
THR
71
HELX_P
A
GLU
116
A
GLU
94
1
3
24
A
TYR
118
A
TYR
96
HELX_P
A
ASP
124
A
ASP
102
1
4
7
A
ASP
124
A
ASP
102
HELX_P
A
MLY
160
A
MLY
138
1
5
37
covale
1.334
both
A
GLU
44
A
C
GLU
22
1_555
A
MLY
45
A
N
MLY
23
1_555
covale
1.323
both
A
MLY
45
A
C
MLY
23
1_555
A
TYR
46
A
N
TYR
24
1_555
covale
1.331
both
A
VAL
67
A
C
VAL
45
1_555
A
MLY
68
A
N
MLY
46
1_555
covale
1.336
both
A
MLY
68
A
C
MLY
46
1_555
A
GLY
69
A
N
GLY
47
1_555
covale
1.328
both
A
GLU
74
A
C
GLU
52
1_555
A
MLY
75
A
N
MLY
53
1_555
covale
1.323
both
A
MLY
75
A
C
MLY
53
1_555
A
GLU
76
A
N
GLU
54
1_555
covale
1.340
both
A
ALA
86
A
C
ALA
64
1_555
A
MLY
87
A
N
MLY
65
1_555
covale
1.315
both
A
MLY
87
A
C
MLY
65
1_555
A
LEU
88
A
N
LEU
66
1_555
covale
1.330
both
A
ALA
91
A
C
ALA
69
1_555
A
MLY
92
A
N
MLY
70
1_555
covale
1.323
both
A
MLY
92
A
C
MLY
70
1_555
A
THR
93
A
N
THR
71
1_555
covale
1.326
both
A
LEU
121
A
C
LEU
99
1_555
A
MLY
122
A
N
MLY
100
1_555
covale
1.330
both
A
MLY
122
A
C
MLY
100
1_555
A
ALA
123
A
N
ALA
101
1_555
covale
1.349
both
A
LEU
130
A
C
LEU
108
1_555
A
MSE
131
A
N
MSE
109
1_555
covale
1.338
both
A
MSE
131
A
C
MSE
109
1_555
A
ASP
132
A
N
ASP
110
1_555
covale
1.336
both
A
VAL
152
A
C
VAL
130
1_555
A
MLY
153
A
N
MLY
131
1_555
covale
1.332
both
A
MLY
153
A
C
MLY
131
1_555
A
MLY
154
A
N
MLY
132
1_555
covale
1.327
both
A
MLY
154
A
C
MLY
132
1_555
A
TYR
155
A
N
TYR
133
1_555
covale
1.335
both
A
ILE
159
A
C
ILE
137
1_555
A
MLY
160
A
N
MLY
138
1_555
covale
1.337
both
A
MLY
160
A
C
MLY
138
1_555
A
MLY
161
A
N
MLY
139
1_555
covale
1.317
both
A
GLU
175
A
C
GLU
153
1_555
A
MLY
176
A
N
MLY
154
1_555
covale
1.329
both
A
MLY
176
A
C
MLY
154
1_555
A
GLN
177
A
N
GLN
155
1_555
covale
1.333
both
A
ALA
181
A
C
ALA
159
1_555
A
MLY
182
A
N
MLY
160
1_555
covale
1.336
both
A
MLY
182
A
C
MLY
160
1_555
A
PRO
183
A
N
PRO
161
1_555
MEMBRANE PROTEIN
Bromodomain-like fold, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, membrane protein
Q9X056_THEMA
UNP
1
35
Q9X056
LVSLEQEVQEKYSQIQNQLQRRADLIPNLVETVKGYAAHEKEILEEIANARAKLIGAKTPQESAQADAELSSALSRLLAI
AENYPNLKADANFRQLMDELAGTENRIAVARRDYNEAVKKYNTAIKKFPGVIFAKMFGFEEKQYFEAKPGAEEVPEVKF
35
193
2ETD
35
193
Q9X056
A
1
13
171
1
expression tag
MSE
-11
2ETD
A
Q9X056
UNP
1
1
expression tag
GLY
-10
2ETD
A
Q9X056
UNP
2
1
expression tag
SER
-9
2ETD
A
Q9X056
UNP
3
1
expression tag
ASP
-8
2ETD
A
Q9X056
UNP
4
1
expression tag
MLY
-7
2ETD
A
Q9X056
UNP
5
1
expression tag
ILE
-6
2ETD
A
Q9X056
UNP
6
1
expression tag
HIS
-5
2ETD
A
Q9X056
UNP
7
1
expression tag
HIS
-4
2ETD
A
Q9X056
UNP
8
1
expression tag
HIS
-3
2ETD
A
Q9X056
UNP
9
1
expression tag
HIS
-2
2ETD
A
Q9X056
UNP
10
1
expression tag
HIS
-1
2ETD
A
Q9X056
UNP
11
1
expression tag
HIS
0
2ETD
A
Q9X056
UNP
12
1
LYS
modified residue
MLY
45
2ETD
A
Q9X056
UNP
45
23
1
LYS
modified residue
MLY
68
2ETD
A
Q9X056
UNP
68
46
1
LYS
modified residue
MLY
75
2ETD
A
Q9X056
UNP
75
53
1
LYS
modified residue
MLY
87
2ETD
A
Q9X056
UNP
87
65
1
LYS
modified residue
MLY
92
2ETD
A
Q9X056
UNP
92
70
1
LYS
modified residue
MLY
122
2ETD
A
Q9X056
UNP
122
100
1
MET
modified residue
MSE
131
2ETD
A
Q9X056
UNP
131
109
1
LYS
modified residue
MLY
153
2ETD
A
Q9X056
UNP
153
131
1
LYS
modified residue
MLY
154
2ETD
A
Q9X056
UNP
154
132
1
LYS
modified residue
MLY
160
2ETD
A
Q9X056
UNP
160
138
1
LYS
modified residue
MLY
161
2ETD
A
Q9X056
UNP
161
139
1
LYS
modified residue
MLY
169
2ETD
A
Q9X056
UNP
169
147
1
MET
modified residue
MSE
170
2ETD
A
Q9X056
UNP
170
148
1
LYS
modified residue
MLY
176
2ETD
A
Q9X056
UNP
176
154
1
LYS
modified residue
MLY
182
2ETD
A
Q9X056
UNP
182
160
1
LYS
modified residue
MLY
192
2ETD
A
Q9X056
UNP
192
170
BINDING SITE FOR RESIDUE CL A 1
A
CL
1
Software
2
A
ARG
56
A
ARG
34
2
1_555
A
LEU
108
A
LEU
86
2
1_555
21
C 2 2 2