0.01012 0.00000 0.00733 0.00000 0.01711 0.00000 0.00000 0.00000 0.01535 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 125.910 90.000 98.852 58.439 80.432 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of Transcriptional regulator, putative, MAR family (tm0816) from Thermotoga maritima at 2.50 A resolution 10.2210/pdb2eth/pdb pdb_00002eth 100 1 CCD 2005-07-25 MARMOSAIC 325 mm CCD double crystal MAD M x-ray 1 0.91837 1.0 0.97932 1.0 BL9-2 SSRL 0.91837, 0.97932 SYNCHROTRON SSRL BEAMLINE BL9-2 18197.807 transcriptional regulator, putative, Mar family 2 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 47 nat water no yes (MSE)GSDKIHHHHHH(MSE)DALEIFKTLFSLV(MSE)RFSSYLPSNEEISD(MSE)KTTELYAFLYVALFGPKK (MSE)KEIAEFLSTTKSNVTNVVDSLEKRGLVVRE(MSE)DPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSE EDFKVVSEGFNR(MSE)VEALSREGR MGSDKIHHHHHHMDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVD SLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEALSREGR A,B 282686 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermotoga Escherichia sample tm0816 2336 Thermotoga maritima 562 Escherichia coli Plasmid 1 2.65 53.27 6.5 2.0M (NH4)2SO4, 0.2M NaCl, 0.1M Cacodylate, pH 6.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Advisory Version format compliance Database references Derived calculations 1 0 2005-11-08 1 1 2008-05-01 1 2 2011-07-13 1 3 2023-01-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2005-10-27 REL REL CL CHLORIDE ION HOH water CL 1 2 CL CL 143 A HOH 3 3 HOH HOH 144 A HOH 4 3 HOH HOH 145 A HOH 7 3 HOH HOH 146 A HOH 8 3 HOH HOH 147 A HOH 9 3 HOH HOH 148 A HOH 10 3 HOH HOH 149 A HOH 11 3 HOH HOH 150 A HOH 14 3 HOH HOH 151 A HOH 16 3 HOH HOH 152 A HOH 17 3 HOH HOH 153 A HOH 18 3 HOH HOH 154 A HOH 22 3 HOH HOH 155 A HOH 23 3 HOH HOH 156 A HOH 25 3 HOH HOH 157 A HOH 27 3 HOH HOH 158 A HOH 30 3 HOH HOH 159 A HOH 31 3 HOH HOH 160 A HOH 32 3 HOH HOH 161 A HOH 33 3 HOH HOH 162 A HOH 35 3 HOH HOH 163 A HOH 36 3 HOH HOH 164 A HOH 38 3 HOH HOH 165 A HOH 43 3 HOH HOH 166 A HOH 44 3 HOH HOH 167 A HOH 45 3 HOH HOH 168 A HOH 47 3 HOH HOH 169 A HOH 2 3 HOH HOH 143 B HOH 5 3 HOH HOH 144 B HOH 6 3 HOH HOH 145 B HOH 12 3 HOH HOH 146 B HOH 13 3 HOH HOH 147 B HOH 15 3 HOH HOH 148 B HOH 19 3 HOH HOH 149 B HOH 20 3 HOH HOH 150 B HOH 21 3 HOH HOH 151 B HOH 24 3 HOH HOH 152 B HOH 26 3 HOH HOH 153 B HOH 28 3 HOH HOH 154 B HOH 29 3 HOH HOH 155 B HOH 34 3 HOH HOH 156 B HOH 37 3 HOH HOH 157 B HOH 39 3 HOH HOH 158 B HOH 40 3 HOH HOH 159 B HOH 41 3 HOH HOH 160 B HOH 42 3 HOH HOH 161 B HOH 46 3 HOH HOH 162 B HOH 48 3 HOH HOH 163 B n 1 -11 A n 2 -10 A n 3 -9 A n 4 -8 A n 5 -7 A n 6 -6 A n 7 -5 A n 8 -4 A n 9 -3 A n 10 -2 A n 11 -1 A HIS 0 n 12 HIS 0 A MSE 1 n 13 MSE 1 A ASP 2 n 14 ASP 2 A ALA 3 n 15 ALA 3 A LEU 4 n 16 LEU 4 A GLU 5 n 17 GLU 5 A ILE 6 n 18 ILE 6 A PHE 7 n 19 PHE 7 A LYS 8 n 20 LYS 8 A THR 9 n 21 THR 9 A LEU 10 n 22 LEU 10 A PHE 11 n 23 PHE 11 A SER 12 n 24 SER 12 A LEU 13 n 25 LEU 13 A VAL 14 n 26 VAL 14 A MSE 15 n 27 MSE 15 A ARG 16 n 28 ARG 16 A PHE 17 n 29 PHE 17 A SER 18 n 30 SER 18 A SER 19 n 31 SER 19 A TYR 20 n 32 TYR 20 A LEU 21 n 33 LEU 21 A PRO 22 n 34 PRO 22 A SER 23 n 35 SER 23 A ASN 24 n 36 ASN 24 A GLU 25 n 37 GLU 25 A GLU 26 n 38 GLU 26 A ILE 27 n 39 ILE 27 A SER 28 n 40 SER 28 A ASP 29 n 41 ASP 29 A MSE 30 n 42 MSE 30 A LYS 31 n 43 LYS 31 A THR 32 n 44 THR 32 A THR 33 n 45 THR 33 A GLU 34 n 46 GLU 34 A LEU 35 n 47 LEU 35 A TYR 36 n 48 TYR 36 A ALA 37 n 49 ALA 37 A PHE 38 n 50 PHE 38 A LEU 39 n 51 LEU 39 A TYR 40 n 52 TYR 40 A VAL 41 n 53 VAL 41 A ALA 42 n 54 ALA 42 A LEU 43 n 55 LEU 43 A PHE 44 n 56 PHE 44 A GLY 45 n 57 GLY 45 A PRO 46 n 58 PRO 46 A LYS 47 n 59 LYS 47 A LYS 48 n 60 LYS 48 A MSE 49 n 61 MSE 49 A LYS 50 n 62 LYS 50 A GLU 51 n 63 GLU 51 A ILE 52 n 64 ILE 52 A ALA 53 n 65 ALA 53 A GLU 54 n 66 GLU 54 A PHE 55 n 67 PHE 55 A LEU 56 n 68 LEU 56 A SER 57 n 69 SER 57 A THR 58 n 70 THR 58 A THR 59 n 71 THR 59 A LYS 60 n 72 LYS 60 A SER 61 n 73 SER 61 A ASN 62 n 74 ASN 62 A VAL 63 n 75 VAL 63 A THR 64 n 76 THR 64 A ASN 65 n 77 ASN 65 A VAL 66 n 78 VAL 66 A VAL 67 n 79 VAL 67 A ASP 68 n 80 ASP 68 A SER 69 n 81 SER 69 A LEU 70 n 82 LEU 70 A GLU 71 n 83 GLU 71 A LYS 72 n 84 LYS 72 A ARG 73 n 85 ARG 73 A GLY 74 n 86 GLY 74 A LEU 75 n 87 LEU 75 A VAL 76 n 88 VAL 76 A VAL 77 n 89 VAL 77 A ARG 78 n 90 ARG 78 A GLU 79 n 91 GLU 79 A MSE 80 n 92 MSE 80 A ASP 81 n 93 ASP 81 A PRO 82 n 94 PRO 82 A VAL 83 n 95 VAL 83 A ASP 84 n 96 ASP 84 A ARG 85 n 97 ARG 85 A ARG 86 n 98 ARG 86 A THR 87 n 99 THR 87 A TYR 88 n 100 TYR 88 A ARG 89 n 101 ARG 89 A VAL 90 n 102 VAL 90 A VAL 91 n 103 VAL 91 A LEU 92 n 104 LEU 92 A THR 93 n 105 THR 93 A GLU 94 n 106 GLU 94 A LYS 95 n 107 LYS 95 A GLY 96 n 108 GLY 96 A LYS 97 n 109 LYS 97 A GLU 98 n 110 GLU 98 A ILE 99 n 111 ILE 99 A PHE 100 n 112 PHE 100 A GLY 101 n 113 GLY 101 A GLU 102 n 114 GLU 102 A ILE 103 n 115 ILE 103 A LEU 104 n 116 LEU 104 A SER 105 n 117 SER 105 A ASN 106 n 118 ASN 106 A PHE 107 n 119 PHE 107 A GLU 108 n 120 GLU 108 A SER 109 n 121 SER 109 A LEU 110 n 122 LEU 110 A LEU 111 n 123 LEU 111 A LYS 112 n 124 LYS 112 A SER 113 n 125 SER 113 A VAL 114 n 126 VAL 114 A LEU 115 n 127 LEU 115 A GLU 116 n 128 GLU 116 A LYS 117 n 129 LYS 117 A PHE 118 n 130 PHE 118 A SER 119 n 131 SER 119 A GLU 120 n 132 GLU 120 A GLU 121 n 133 GLU 121 A ASP 122 n 134 ASP 122 A PHE 123 n 135 PHE 123 A LYS 124 n 136 LYS 124 A VAL 125 n 137 VAL 125 A VAL 126 n 138 VAL 126 A SER 127 n 139 SER 127 A GLU 128 n 140 GLU 128 A GLY 129 n 141 GLY 129 A PHE 130 n 142 PHE 130 A ASN 131 n 143 ASN 131 A ARG 132 n 144 ARG 132 A MSE 133 n 145 MSE 133 A VAL 134 n 146 VAL 134 A GLU 135 n 147 GLU 135 A ALA 136 n 148 ALA 136 A LEU 137 n 149 LEU 137 A SER 138 n 150 SER 138 A ARG 139 n 151 ARG 139 A GLU 140 n 152 GLU 140 A n 153 141 A n 154 142 A n 1 -11 B n 2 -10 B n 3 -9 B n 4 -8 B n 5 -7 B n 6 -6 B n 7 -5 B n 8 -4 B n 9 -3 B n 10 -2 B n 11 -1 B HIS 0 n 12 HIS 0 B MSE 1 n 13 MSE 1 B ASP 2 n 14 ASP 2 B ALA 3 n 15 ALA 3 B LEU 4 n 16 LEU 4 B GLU 5 n 17 GLU 5 B ILE 6 n 18 ILE 6 B PHE 7 n 19 PHE 7 B LYS 8 n 20 LYS 8 B THR 9 n 21 THR 9 B LEU 10 n 22 LEU 10 B PHE 11 n 23 PHE 11 B SER 12 n 24 SER 12 B LEU 13 n 25 LEU 13 B VAL 14 n 26 VAL 14 B MSE 15 n 27 MSE 15 B ARG 16 n 28 ARG 16 B PHE 17 n 29 PHE 17 B SER 18 n 30 SER 18 B SER 19 n 31 SER 19 B TYR 20 n 32 TYR 20 B LEU 21 n 33 LEU 21 B PRO 22 n 34 PRO 22 B SER 23 n 35 SER 23 B ASN 24 n 36 ASN 24 B GLU 25 n 37 GLU 25 B GLU 26 n 38 GLU 26 B ILE 27 n 39 ILE 27 B SER 28 n 40 SER 28 B ASP 29 n 41 ASP 29 B MSE 30 n 42 MSE 30 B LYS 31 n 43 LYS 31 B THR 32 n 44 THR 32 B THR 33 n 45 THR 33 B GLU 34 n 46 GLU 34 B LEU 35 n 47 LEU 35 B TYR 36 n 48 TYR 36 B ALA 37 n 49 ALA 37 B PHE 38 n 50 PHE 38 B LEU 39 n 51 LEU 39 B TYR 40 n 52 TYR 40 B VAL 41 n 53 VAL 41 B ALA 42 n 54 ALA 42 B LEU 43 n 55 LEU 43 B PHE 44 n 56 PHE 44 B GLY 45 n 57 GLY 45 B PRO 46 n 58 PRO 46 B LYS 47 n 59 LYS 47 B LYS 48 n 60 LYS 48 B MSE 49 n 61 MSE 49 B LYS 50 n 62 LYS 50 B GLU 51 n 63 GLU 51 B ILE 52 n 64 ILE 52 B ALA 53 n 65 ALA 53 B GLU 54 n 66 GLU 54 B PHE 55 n 67 PHE 55 B LEU 56 n 68 LEU 56 B SER 57 n 69 SER 57 B THR 58 n 70 THR 58 B THR 59 n 71 THR 59 B LYS 60 n 72 LYS 60 B SER 61 n 73 SER 61 B ASN 62 n 74 ASN 62 B VAL 63 n 75 VAL 63 B THR 64 n 76 THR 64 B ASN 65 n 77 ASN 65 B VAL 66 n 78 VAL 66 B VAL 67 n 79 VAL 67 B ASP 68 n 80 ASP 68 B SER 69 n 81 SER 69 B LEU 70 n 82 LEU 70 B GLU 71 n 83 GLU 71 B LYS 72 n 84 LYS 72 B ARG 73 n 85 ARG 73 B GLY 74 n 86 GLY 74 B LEU 75 n 87 LEU 75 B VAL 76 n 88 VAL 76 B VAL 77 n 89 VAL 77 B ARG 78 n 90 ARG 78 B GLU 79 n 91 GLU 79 B MSE 80 n 92 MSE 80 B ASP 81 n 93 ASP 81 B PRO 82 n 94 PRO 82 B VAL 83 n 95 VAL 83 B ASP 84 n 96 ASP 84 B ARG 85 n 97 ARG 85 B ARG 86 n 98 ARG 86 B THR 87 n 99 THR 87 B TYR 88 n 100 TYR 88 B ARG 89 n 101 ARG 89 B VAL 90 n 102 VAL 90 B VAL 91 n 103 VAL 91 B LEU 92 n 104 LEU 92 B THR 93 n 105 THR 93 B GLU 94 n 106 GLU 94 B LYS 95 n 107 LYS 95 B GLY 96 n 108 GLY 96 B LYS 97 n 109 LYS 97 B GLU 98 n 110 GLU 98 B ILE 99 n 111 ILE 99 B PHE 100 n 112 PHE 100 B GLY 101 n 113 GLY 101 B GLU 102 n 114 GLU 102 B ILE 103 n 115 ILE 103 B LEU 104 n 116 LEU 104 B SER 105 n 117 SER 105 B ASN 106 n 118 ASN 106 B PHE 107 n 119 PHE 107 B GLU 108 n 120 GLU 108 B SER 109 n 121 SER 109 B LEU 110 n 122 LEU 110 B LEU 111 n 123 LEU 111 B LYS 112 n 124 LYS 112 B SER 113 n 125 SER 113 B VAL 114 n 126 VAL 114 B LEU 115 n 127 LEU 115 B GLU 116 n 128 GLU 116 B LYS 117 n 129 LYS 117 B PHE 118 n 130 PHE 118 B SER 119 n 131 SER 119 B GLU 120 n 132 GLU 120 B GLU 121 n 133 GLU 121 B ASP 122 n 134 ASP 122 B PHE 123 n 135 PHE 123 B LYS 124 n 136 LYS 124 B VAL 125 n 137 VAL 125 B VAL 126 n 138 VAL 126 B SER 127 n 139 SER 127 B GLU 128 n 140 GLU 128 B GLY 129 n 141 GLY 129 B PHE 130 n 142 PHE 130 B ASN 131 n 143 ASN 131 B ARG 132 n 144 ARG 132 B MSE 133 n 145 MSE 133 B VAL 134 n 146 VAL 134 B GLU 135 n 147 GLU 135 B ALA 136 n 148 ALA 136 B LEU 137 n 149 LEU 137 B SER 138 n 150 SER 138 B ARG 139 n 151 ARG 139 B GLU 140 n 152 GLU 140 B n 153 141 B n 154 142 B 7.9811 -4.5478 6.8038 4.5122 -3.0521 13.6875 -0.0752 1.1422 -0.0325 -0.3583 -0.0440 0.2782 -0.8348 1.0715 0.1191 0.0034 -0.2456 0.0525 0.4233 -0.1590 0.0971 refined 9.8254 11.3633 8.1080 X-RAY DIFFRACTION 0.6223 -0.4964 -0.9975 1.2853 0.6316 4.9359 -0.1222 -0.1392 0.0826 0.1161 0.0499 0.1373 -0.0804 -0.2332 0.0723 -0.1937 -0.0389 0.0000 -0.0943 -0.0433 -0.1312 refined 18.1969 19.2402 24.9892 X-RAY DIFFRACTION 13.0976 -5.4347 1.1762 14.6885 -4.0813 10.8819 0.0250 0.7093 0.7019 -1.0184 0.1763 0.4512 -0.1170 -1.0201 -0.2013 -0.0388 -0.1467 -0.0331 0.0613 0.0654 -0.1674 refined 19.2733 21.9614 16.6476 X-RAY DIFFRACTION 3.4559 1.6504 -1.3881 1.0243 -0.4374 0.7729 0.0500 0.0073 0.2219 -0.0065 0.0686 0.3270 0.1437 -0.1276 -0.1186 -0.0233 -0.0709 -0.0305 0.0008 0.0769 0.0491 refined 1.5966 11.6534 11.3381 X-RAY DIFFRACTION A 0 A 12 A 23 A 35 X-RAY DIFFRACTION 1 all A 24 A 36 A 140 A 152 X-RAY DIFFRACTION 2 all B 0 B 12 B 23 B 35 X-RAY DIFFRACTION 3 all B 24 B 36 B 140 B 152 X-RAY DIFFRACTION 4 all author_and_software_defined_assembly PISA 2 dimeric software_defined_assembly PISA 4 tetrameric 5280 -66 15080 11860 -115 28620 A MSE 1 SELENOMETHIONINE A MSE 13 MET A MSE 15 SELENOMETHIONINE A MSE 27 MET A MSE 30 SELENOMETHIONINE A MSE 42 MET A MSE 49 SELENOMETHIONINE A MSE 61 MET A MSE 80 SELENOMETHIONINE A MSE 92 MET A MSE 133 SELENOMETHIONINE A MSE 145 MET B MSE 1 SELENOMETHIONINE B MSE 13 MET B MSE 15 SELENOMETHIONINE B MSE 27 MET B MSE 30 SELENOMETHIONINE B MSE 42 MET B MSE 49 SELENOMETHIONINE B MSE 61 MET B MSE 80 SELENOMETHIONINE B MSE 92 MET B MSE 133 SELENOMETHIONINE B MSE 145 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 2_656 -x+1,y,-z+1 crystal symmetry operation 51.6775279308 0.0000000000 65.1450367180 A N GLU 79 A N GLU 91 A O ARG 89 A O ARG 101 B N GLU 79 B N GLU 91 B O TYR 88 B O TYR 100 1 A CG LEU 4 A CG LEU 16 1 Y 1 A CD1 LEU 4 A CD1 LEU 16 1 Y 1 A CD2 LEU 4 A CD2 LEU 16 1 Y 1 A CG GLU 5 A CG GLU 17 1 Y 1 A CD GLU 5 A CD GLU 17 1 Y 1 A OE1 GLU 5 A OE1 GLU 17 1 Y 1 A OE2 GLU 5 A OE2 GLU 17 1 Y 1 A CG LEU 10 A CG LEU 22 1 Y 1 A CD1 LEU 10 A CD1 LEU 22 1 Y 1 A CD2 LEU 10 A CD2 LEU 22 1 Y 1 A CG ARG 16 A CG ARG 28 1 Y 1 A CD ARG 16 A CD ARG 28 1 Y 1 A NE ARG 16 A NE ARG 28 1 Y 1 A CZ ARG 16 A CZ ARG 28 1 Y 1 A NH1 ARG 16 A NH1 ARG 28 1 Y 1 A NH2 ARG 16 A NH2 ARG 28 1 Y 1 A CG GLU 25 A CG GLU 37 1 Y 1 A CD GLU 25 A CD GLU 37 1 Y 1 A OE1 GLU 25 A OE1 GLU 37 1 Y 1 A OE2 GLU 25 A OE2 GLU 37 1 Y 1 A OE1 GLU 26 A OE1 GLU 38 1 Y 1 A OE2 GLU 26 A OE2 GLU 38 1 Y 1 A CG1 ILE 27 A CG1 ILE 39 1 Y 1 A CG2 ILE 27 A CG2 ILE 39 1 Y 1 A CD1 ILE 27 A CD1 ILE 39 1 Y 1 A CE LYS 48 A CE LYS 60 1 Y 1 A NZ LYS 48 A NZ LYS 60 1 Y 1 A CD LYS 50 A CD LYS 62 1 Y 1 A CE LYS 50 A CE LYS 62 1 Y 1 A NZ LYS 50 A NZ LYS 62 1 Y 1 A CD GLU 54 A CD GLU 66 1 Y 1 A OE1 GLU 54 A OE1 GLU 66 1 Y 1 A OE2 GLU 54 A OE2 GLU 66 1 Y 1 A OG1 THR 58 A OG1 THR 70 1 Y 1 A CG2 THR 58 A CG2 THR 70 1 Y 1 A CG LYS 60 A CG LYS 72 1 Y 1 A CD LYS 60 A CD LYS 72 1 Y 1 A CE LYS 60 A CE LYS 72 1 Y 1 A NZ LYS 60 A NZ LYS 72 1 Y 1 A OG SER 61 A OG SER 73 1 Y 1 A OD1 ASP 68 A OD1 ASP 80 1 Y 1 A OD2 ASP 68 A OD2 ASP 80 1 Y 1 A CE LYS 72 A CE LYS 84 1 Y 1 A NZ LYS 72 A NZ LYS 84 1 Y 1 A CD ARG 85 A CD ARG 97 1 Y 1 A NE ARG 85 A NE ARG 97 1 Y 1 A CZ ARG 85 A CZ ARG 97 1 Y 1 A NH1 ARG 85 A NH1 ARG 97 1 Y 1 A NH2 ARG 85 A NH2 ARG 97 1 Y 1 A CG ARG 86 A CG ARG 98 1 Y 1 A CD ARG 86 A CD ARG 98 1 Y 1 A NE ARG 86 A NE ARG 98 1 Y 1 A CZ ARG 86 A CZ ARG 98 1 Y 1 A NH1 ARG 86 A NH1 ARG 98 1 Y 1 A NH2 ARG 86 A NH2 ARG 98 1 Y 1 A NZ LYS 97 A NZ LYS 109 1 Y 1 A CG GLU 98 A CG GLU 110 1 Y 1 A CD GLU 98 A CD GLU 110 1 Y 1 A OE1 GLU 98 A OE1 GLU 110 1 Y 1 A OE2 GLU 98 A OE2 GLU 110 1 Y 1 A CG LYS 112 A CG LYS 124 1 Y 1 A CD LYS 112 A CD LYS 124 1 Y 1 A CE LYS 112 A CE LYS 124 1 Y 1 A NZ LYS 112 A NZ LYS 124 1 Y 1 A OE1 GLU 116 A OE1 GLU 128 1 Y 1 A OE2 GLU 116 A OE2 GLU 128 1 Y 1 A NZ LYS 117 A NZ LYS 129 1 Y 1 A CD GLU 120 A CD GLU 132 1 Y 1 A OE1 GLU 120 A OE1 GLU 132 1 Y 1 A OE2 GLU 120 A OE2 GLU 132 1 Y 1 A CD LYS 124 A CD LYS 136 1 Y 1 A CE LYS 124 A CE LYS 136 1 Y 1 A NZ LYS 124 A NZ LYS 136 1 Y 1 A CD GLU 135 A CD GLU 147 1 Y 1 A OE1 GLU 135 A OE1 GLU 147 1 Y 1 A OE2 GLU 135 A OE2 GLU 147 1 Y 1 B CG HIS 0 B CG HIS 12 1 Y 1 B ND1 HIS 0 B ND1 HIS 12 1 Y 1 B CD2 HIS 0 B CD2 HIS 12 1 Y 1 B CE1 HIS 0 B CE1 HIS 12 1 Y 1 B NE2 HIS 0 B NE2 HIS 12 1 Y 1 B CG GLU 5 B CG GLU 17 1 Y 1 B CD GLU 5 B CD GLU 17 1 Y 1 B OE1 GLU 5 B OE1 GLU 17 1 Y 1 B OE2 GLU 5 B OE2 GLU 17 1 Y 1 B CZ ARG 16 B CZ ARG 28 1 Y 1 B NH1 ARG 16 B NH1 ARG 28 1 Y 1 B NH2 ARG 16 B NH2 ARG 28 1 Y 1 B CG ASN 24 B CG ASN 36 1 Y 1 B OD1 ASN 24 B OD1 ASN 36 1 Y 1 B ND2 ASN 24 B ND2 ASN 36 1 Y 1 B CG GLU 25 B CG GLU 37 1 Y 1 B CD GLU 25 B CD GLU 37 1 Y 1 B OE1 GLU 25 B OE1 GLU 37 1 Y 1 B OE2 GLU 25 B OE2 GLU 37 1 Y 1 B CG GLU 26 B CG GLU 38 1 Y 1 B CD GLU 26 B CD GLU 38 1 Y 1 B OE1 GLU 26 B OE1 GLU 38 1 Y 1 B OE2 GLU 26 B OE2 GLU 38 1 Y 1 B CG1 ILE 27 B CG1 ILE 39 1 Y 1 B CG2 ILE 27 B CG2 ILE 39 1 Y 1 B CD1 ILE 27 B CD1 ILE 39 1 Y 1 B CE LYS 48 B CE LYS 60 1 Y 1 B NZ LYS 48 B NZ LYS 60 1 Y 1 B CD LYS 50 B CD LYS 62 1 Y 1 B CE LYS 50 B CE LYS 62 1 Y 1 B NZ LYS 50 B NZ LYS 62 1 Y 1 B CD GLU 54 B CD GLU 66 1 Y 1 B OE1 GLU 54 B OE1 GLU 66 1 Y 1 B OE2 GLU 54 B OE2 GLU 66 1 Y 1 B OG1 THR 58 B OG1 THR 70 1 Y 1 B CG2 THR 58 B CG2 THR 70 1 Y 1 B CG LYS 60 B CG LYS 72 1 Y 1 B CD LYS 60 B CD LYS 72 1 Y 1 B CE LYS 60 B CE LYS 72 1 Y 1 B NZ LYS 60 B NZ LYS 72 1 Y 1 B OG SER 61 B OG SER 73 1 Y 1 B CD LYS 72 B CD LYS 84 1 Y 1 B CE LYS 72 B CE LYS 84 1 Y 1 B NZ LYS 72 B NZ LYS 84 1 Y 1 B CZ ARG 86 B CZ ARG 98 1 Y 1 B NH1 ARG 86 B NH1 ARG 98 1 Y 1 B NH2 ARG 86 B NH2 ARG 98 1 Y 1 B CG GLU 94 B CG GLU 106 1 Y 1 B CD GLU 94 B CD GLU 106 1 Y 1 B OE1 GLU 94 B OE1 GLU 106 1 Y 1 B OE2 GLU 94 B OE2 GLU 106 1 Y 1 B CG GLU 98 B CG GLU 110 1 Y 1 B CD GLU 98 B CD GLU 110 1 Y 1 B OE1 GLU 98 B OE1 GLU 110 1 Y 1 B OE2 GLU 98 B OE2 GLU 110 1 Y 1 B CD GLU 102 B CD GLU 114 1 Y 1 B OE1 GLU 102 B OE1 GLU 114 1 Y 1 B OE2 GLU 102 B OE2 GLU 114 1 Y 1 B CG GLU 108 B CG GLU 120 1 Y 1 B CD GLU 108 B CD GLU 120 1 Y 1 B OE1 GLU 108 B OE1 GLU 120 1 Y 1 B OE2 GLU 108 B OE2 GLU 120 1 Y 1 B CG LYS 112 B CG LYS 124 1 Y 1 B CD LYS 112 B CD LYS 124 1 Y 1 B CE LYS 112 B CE LYS 124 1 Y 1 B NZ LYS 112 B NZ LYS 124 1 Y 1 B CD GLU 120 B CD GLU 132 1 Y 1 B OE1 GLU 120 B OE1 GLU 132 1 Y 1 B OE2 GLU 120 B OE2 GLU 132 1 Y 1 B CD LYS 124 B CD LYS 136 1 Y 1 B CE LYS 124 B CE LYS 136 1 Y 1 B NZ LYS 124 B NZ LYS 136 1 Y 1 A MSE -11 A MSE 1 1 Y 1 A GLY -10 A GLY 2 1 Y 1 A SER -9 A SER 3 1 Y 1 A ASP -8 A ASP 4 1 Y 1 A LYS -7 A LYS 5 1 Y 1 A ILE -6 A ILE 6 1 Y 1 A HIS -5 A HIS 7 1 Y 1 A HIS -4 A HIS 8 1 Y 1 A HIS -3 A HIS 9 1 Y 1 A HIS -2 A HIS 10 1 Y 1 A HIS -1 A HIS 11 1 Y 1 A GLY 141 A GLY 153 1 Y 1 A ARG 142 A ARG 154 1 Y 1 B MSE -11 B MSE 1 1 Y 1 B GLY -10 B GLY 2 1 Y 1 B SER -9 B SER 3 1 Y 1 B ASP -8 B ASP 4 1 Y 1 B LYS -7 B LYS 5 1 Y 1 B ILE -6 B ILE 6 1 Y 1 B HIS -5 B HIS 7 1 Y 1 B HIS -4 B HIS 8 1 Y 1 B HIS -3 B HIS 9 1 Y 1 B HIS -2 B HIS 10 1 Y 1 B HIS -1 B HIS 11 1 Y 1 B GLY 141 B GLY 153 1 Y 1 B ARG 142 B ARG 154 1 Y 1 A A ARG GLU 139 140 -144.46 1 B B ARG GLU 139 140 -143.53 1 3.73 0.50 120.30 124.03 B B B NE CZ NH1 ARG ARG ARG 132 132 132 N 1 A MSE 1 70.13 120.20 1 A SER 57 20.44 37.96 1 A ARG 85 75.94 -17.08 1 A ARG 139 -59.11 -71.06 1 B PRO 22 -54.59 -173.12 1 B LEU 56 -79.02 26.03 1 B SER 57 23.16 33.53 38.957 1.190 0.000 0.290 -0.030 0.000 -0.820 0.936 0.925 (1) HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. (2) THE NOMINAL RESOLUTION IS 2.50 A WITH 1303 OBSERVED REFLECTIONS BETWEEN 2.50-2.30 (35.8% COMPLETE FOR THIS SHELL) INCLUDED IN THE REFINEMENT. (3) DISORDERED REGIONS, INCLUDING B19-B24 AND B55-63, WERE DIFFICULT TO MODEL. NCS WAS USED TO MODEL THESE REGIONS. (4) UNKNOWN DENSITIES NEAR A131 AND B58 COULD NOT BE MODELED. (5) A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 0.264 0.227 0.229 2.300 45.030 732 13786 5.000 87.120 14.641 0.175 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MAD 0.367 0.258 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 2.300 45.030 47 2190 1 0 2142 0.017 0.022 2181 0.001 0.020 1456 1.562 1.974 2946 0.975 3.000 3556 7.050 5.000 282 35.283 23.457 81 19.126 15.000 378 23.667 15.000 11 0.091 0.200 353 0.006 0.020 2408 0.001 0.020 463 0.236 0.200 528 0.192 0.200 1437 0.189 0.200 1139 0.093 0.200 1170 0.181 0.200 54 0.297 0.200 25 0.305 0.200 46 0.164 0.200 7 0.929 1.500 1448 0.198 1.500 567 1.507 2.000 2259 2.256 3.000 823 3.496 4.500 686 1 A 1 96 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.170 0.500 1 A 1 100 X-RAY DIFFRACTION LOOSE POSITIONAL 0.560 5.000 1 A 1 96 X-RAY DIFFRACTION MEDIUM THERMAL 0.560 2.000 1 A 1 100 X-RAY DIFFRACTION LOOSE THERMAL 1.050 10.000 1 A 2 142 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.140 0.500 1 A 2 177 X-RAY DIFFRACTION LOOSE POSITIONAL 0.320 5.000 1 A 2 142 X-RAY DIFFRACTION MEDIUM THERMAL 1.120 2.000 1 A 2 177 X-RAY DIFFRACTION LOOSE THERMAL 1.860 10.000 1 A 3 96 X-RAY DIFFRACTION TIGHT POSITIONAL 0.040 0.050 1 A 3 96 X-RAY DIFFRACTION TIGHT THERMAL 0.580 0.500 1 A 4 89 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.150 0.500 1 A 4 99 X-RAY DIFFRACTION LOOSE POSITIONAL 0.560 5.000 1 A 4 89 X-RAY DIFFRACTION MEDIUM THERMAL 1.280 2.000 1 A 4 99 X-RAY DIFFRACTION LOOSE THERMAL 2.340 10.000 1 A 5 295 X-RAY DIFFRACTION MEDIUM POSITIONAL 0.240 0.500 1 A 5 326 X-RAY DIFFRACTION LOOSE POSITIONAL 0.410 5.000 1 A 5 295 X-RAY DIFFRACTION MEDIUM THERMAL 1.290 2.000 1 A 5 326 X-RAY DIFFRACTION LOOSE THERMAL 2.060 10.000 0.274 0.248 2.360 19 527 20 44.860 2.30 47.19 2ETH 14519 0.058 0.058 1 9.600 3.500 87.300 0.637 2.30 2.36 1.200 547 0.637 1 3.100 45.100 0.563 2.36 2.42 1.300 629 0.563 1 3.300 53.400 0.513 2.42 2.49 1.500 749 0.513 1 3.400 64.900 0.401 2.49 2.57 0.700 856 0.401 1 3.400 76.700 0.326 2.57 2.66 2.200 1064 0.326 1 3.600 96.600 0.291 2.66 2.75 2.500 1050 0.291 1 3.600 98.200 0.213 2.75 2.85 3.400 994 0.213 1 3.600 97.900 0.173 2.85 2.97 4.200 961 0.173 1 3.600 98.200 0.127 2.97 3.10 5.700 923 0.127 1 3.600 98.200 0.101 3.10 3.25 6.600 893 0.101 1 3.600 98.400 0.081 3.25 3.43 8.200 840 0.081 1 3.600 98.500 0.057 3.43 3.64 11.100 803 0.057 1 3.600 98.400 0.046 3.64 3.89 13.700 755 0.046 1 3.600 98.900 0.039 3.89 4.20 16.000 709 0.039 1 3.600 98.400 0.033 4.20 4.60 18.500 641 0.033 1 3.600 98.900 0.031 4.60 5.14 20.500 593 0.031 1 3.600 98.900 0.038 5.14 5.94 15.500 530 0.038 1 3.600 98.800 0.035 5.94 7.27 16.900 448 0.035 1 3.500 99.000 0.025 7.27 10.29 20.600 343 0.025 1 3.500 99.200 0.021 10.29 47.19 27.600 191 0.021 1 3.300 95.400 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC 5.2.0019 data scaling Phil Evans pre@mrc-lmb.cam.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/INDEX.html SCALA data extraction PDB sw-help@rcsb.rutgers.edu Jan. 30, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.601 data reduction MOSFLM data scaling CCP4 (SCALA) phasing SHARP Crystal structure of a marr-like transcriptional regulator (tm0816) from thermotoga maritima at 2.50 A resolution 1 N N 1 N N 2 N N 3 N N 3 N N A ASP 2 A ASP 14 HELX_P A SER 19 A SER 31 1 1 18 A ASN 24 A ASN 36 HELX_P A MSE 30 A MSE 42 1 2 7 A LYS 31 A LYS 43 HELX_P A GLY 45 A GLY 57 1 3 15 A LYS 48 A LYS 60 HELX_P A LEU 56 A LEU 68 1 4 9 A THR 59 A THR 71 HELX_P A ARG 73 A ARG 85 1 5 15 A THR 93 A THR 105 HELX_P A GLU 116 A GLU 128 1 6 24 A SER 119 A SER 131 HELX_P A ARG 139 A ARG 151 1 7 21 B ASP 2 B ASP 14 HELX_P B LEU 21 B LEU 33 1 8 20 B LYS 31 B LYS 43 HELX_P B GLY 45 B GLY 57 1 9 15 B LYS 48 B LYS 60 HELX_P B LEU 56 B LEU 68 1 10 9 B THR 59 B THR 71 HELX_P B ARG 73 B ARG 85 1 11 15 B THR 93 B THR 105 HELX_P B LYS 117 B LYS 129 1 12 25 B SER 119 B SER 131 HELX_P B ARG 139 B ARG 151 1 13 21 covale 1.336 both A HIS 0 A C HIS 12 1_555 A MSE 1 A N MSE 13 1_555 covale 1.331 both A MSE 1 A C MSE 13 1_555 A ASP 2 A N ASP 14 1_555 covale 1.331 both A VAL 14 A C VAL 26 1_555 A MSE 15 A N MSE 27 1_555 covale 1.346 both A MSE 15 A C MSE 27 1_555 A ARG 16 A N ARG 28 1_555 covale 1.339 both A ASP 29 A C ASP 41 1_555 A MSE 30 A N MSE 42 1_555 covale 1.337 both A MSE 30 A C MSE 42 1_555 A LYS 31 A N LYS 43 1_555 covale 1.308 both A LYS 48 A C LYS 60 1_555 A MSE 49 A N MSE 61 1_555 covale 1.344 both A MSE 49 A C MSE 61 1_555 A LYS 50 A N LYS 62 1_555 covale 1.320 both A GLU 79 A C GLU 91 1_555 A MSE 80 A N MSE 92 1_555 covale 1.315 both A MSE 80 A C MSE 92 1_555 A ASP 81 A N ASP 93 1_555 covale 1.319 both A ARG 132 A C ARG 144 1_555 A MSE 133 A N MSE 145 1_555 covale 1.329 both A MSE 133 A C MSE 145 1_555 A VAL 134 A N VAL 146 1_555 covale 1.335 both B HIS 0 B C HIS 12 1_555 B MSE 1 B N MSE 13 1_555 covale 1.339 both B MSE 1 B C MSE 13 1_555 B ASP 2 B N ASP 14 1_555 covale 1.341 both B VAL 14 B C VAL 26 1_555 B MSE 15 B N MSE 27 1_555 covale 1.343 both B MSE 15 B C MSE 27 1_555 B ARG 16 B N ARG 28 1_555 covale 1.330 both B ASP 29 B C ASP 41 1_555 B MSE 30 B N MSE 42 1_555 covale 1.325 both B MSE 30 B C MSE 42 1_555 B LYS 31 B N LYS 43 1_555 covale 1.334 both B LYS 48 B C LYS 60 1_555 B MSE 49 B N MSE 61 1_555 covale 1.335 both B MSE 49 B C MSE 61 1_555 B LYS 50 B N LYS 62 1_555 covale 1.333 both B GLU 79 B C GLU 91 1_555 B MSE 80 B N MSE 92 1_555 covale 1.326 both B MSE 80 B C MSE 92 1_555 B ASP 81 B N ASP 93 1_555 covale 1.323 both B ARG 132 B C ARG 144 1_555 B MSE 133 B N MSE 145 1_555 covale 1.327 both B MSE 133 B C MSE 145 1_555 B VAL 134 B N VAL 146 1_555 TRANSCRIPTION marr family, structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, transcription A B A B A B A B A B A 2 A ASP 14 A 17 A PHE 29 5 B 2 B ASP 14 B 17 B PHE 29 5 A 31 A LYS 43 A 54 A GLU 66 5 B 31 B LYS 43 B 54 B GLU 66 5 A 55 A PHE 67 A 63 A VAL 75 1 B 55 B PHE 67 B 63 B VAL 75 1 A 64 A THR 76 A 78 A ARG 90 5 B 64 B THR 76 B 78 B ARG 90 5 A 91 A VAL 103 A 140 A GLU 152 5 B 91 B VAL 103 B 140 B GLU 152 5 Q9WZS3_THEMA UNP 1 1 Q9WZS3 MDALEIFKTLFSLVMRFSSYLPSNEEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREM DPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFKVVSEGFNRMVEALSREGR 1 142 2ETH 1 142 Q9WZS3 A 1 13 154 1 142 2ETH 1 142 Q9WZS3 B 1 13 154 1 expression tag MSE -11 2ETH A Q9WZS3 UNP 1 1 expression tag GLY -10 2ETH A Q9WZS3 UNP 2 1 expression tag SER -9 2ETH A Q9WZS3 UNP 3 1 expression tag ASP -8 2ETH A Q9WZS3 UNP 4 1 expression tag LYS -7 2ETH A Q9WZS3 UNP 5 1 expression tag ILE -6 2ETH A Q9WZS3 UNP 6 1 expression tag HIS -5 2ETH A Q9WZS3 UNP 7 1 expression tag HIS -4 2ETH A Q9WZS3 UNP 8 1 expression tag HIS -3 2ETH A Q9WZS3 UNP 9 1 expression tag HIS -2 2ETH A Q9WZS3 UNP 10 1 expression tag HIS -1 2ETH A Q9WZS3 UNP 11 1 expression tag HIS 0 2ETH A Q9WZS3 UNP 12 1 MET modified residue MSE 1 2ETH A Q9WZS3 UNP 1 13 1 MET modified residue MSE 15 2ETH A Q9WZS3 UNP 15 27 1 MET modified residue MSE 30 2ETH A Q9WZS3 UNP 30 42 1 MET modified residue MSE 49 2ETH A Q9WZS3 UNP 49 61 1 MET modified residue MSE 80 2ETH A Q9WZS3 UNP 80 92 1 MET modified residue MSE 133 2ETH A Q9WZS3 UNP 133 145 2 expression tag MSE -11 2ETH B Q9WZS3 UNP 1 2 expression tag GLY -10 2ETH B Q9WZS3 UNP 2 2 expression tag SER -9 2ETH B Q9WZS3 UNP 3 2 expression tag ASP -8 2ETH B Q9WZS3 UNP 4 2 expression tag LYS -7 2ETH B Q9WZS3 UNP 5 2 expression tag ILE -6 2ETH B Q9WZS3 UNP 6 2 expression tag HIS -5 2ETH B Q9WZS3 UNP 7 2 expression tag HIS -4 2ETH B Q9WZS3 UNP 8 2 expression tag HIS -3 2ETH B Q9WZS3 UNP 9 2 expression tag HIS -2 2ETH B Q9WZS3 UNP 10 2 expression tag HIS -1 2ETH B Q9WZS3 UNP 11 2 expression tag HIS 0 2ETH B Q9WZS3 UNP 12 2 MET modified residue MSE 1 2ETH B Q9WZS3 UNP 1 13 2 MET modified residue MSE 15 2ETH B Q9WZS3 UNP 15 27 2 MET modified residue MSE 30 2ETH B Q9WZS3 UNP 30 42 2 MET modified residue MSE 49 2ETH B Q9WZS3 UNP 49 61 2 MET modified residue MSE 80 2ETH B Q9WZS3 UNP 80 92 2 MET modified residue MSE 133 2ETH B Q9WZS3 UNP 133 145 2 2 anti-parallel anti-parallel A VAL 76 A VAL 88 A MSE 80 A MSE 92 A TYR 88 A TYR 100 A LEU 92 A LEU 104 B VAL 76 B VAL 88 B ASP 81 B ASP 93 B ARG 86 B ARG 98 B LEU 92 B LEU 104 BINDING SITE FOR RESIDUE CL A 143 A CL 143 Software 1 A VAL 126 A VAL 138 1 1_555 5 C 1 2 1