0.023743 0.000000 0.000000 0.000000 0.018879 0.000000 0.000000 0.000000 0.010839 0.00000 0.00000 0.00000 Cai, J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.00 90.00 90.00 42.117 52.970 92.259 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Co 2 58.933 COBALT (II) ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking C21 H21 N O5 367.395 4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE non-polymer N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CO N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N N N 275 S C N 276 N C N 277 N O N 278 N C N 279 N C N 280 N C N 281 N O N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 N C N 296 N O N 297 N O N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N N N 306 S C N 307 N C N 308 N O N 309 R C N 310 N O N 311 N C N 312 N O N 313 N H N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N N N 323 S C N 324 N C N 325 N O N 326 N C Y 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N C Y 332 N C N 333 N O N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N N N 347 S C N 348 N C N 349 N O N 350 N C N 351 N C N 352 N C N 353 N O N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H Y 365 N C Y 366 N C Y 367 N C Y 368 N C N 369 N C N 370 N C N 371 N N N 372 N C N 373 N O N 374 N C N 375 N C Y 376 N C Y 377 N C Y 378 N C N 379 N O N 380 N C N 381 N O N 382 N C Y 383 N C N 384 N O N 385 N C N 386 N O N 387 N C Y 388 N C Y 389 N C Y 390 N C Y 391 N C N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub N 322 N sing Y 323 N doub N 324 N sing Y 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N doub N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing Y 348 N doub Y 349 N sing N 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing N 355 N sing Y 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N doub N 366 N sing N 367 E doub N 368 N sing N 369 N sing N 370 N sing Y 371 N sing Y 372 N doub Y 373 N doub N 374 N sing N 375 N sing Y 376 N sing N 377 N sing N 378 N doub N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing Y 384 N doub N 385 N sing N 386 N doub N 387 N sing N 388 N sing N 389 N sing N 390 N sing Y 391 N sing N 392 N sing N 393 N sing Y 394 N doub N 395 N sing N 396 N sing US Protein Sci. PRCIEI 0795 0961-8368 15 2071 2081 10.1110/ps.062238406 16882991 Peptide deformylase is a potential target for anti-Helicobacter pylori drugs: reverse docking, enzymatic assay, and X-ray crystallography validation 2006 10.2210/pdb2ew5/pdb pdb_00002ew5 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 OSMIC MIRRORS IMAGE PLATE 2004-06-25 RIGAKU RAXIS IV OSCILLATION SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE RIGAKU 21008.465 peptide deformylase 3.5.1.88 1 man polymer 58.933 COBALT (II) ION 1 syn non-polymer 367.395 4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE 1 syn non-polymer 18.015 water 125 nat water no no ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP KFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE KELKELQKKQKHKLEHHHHHH ALLEIIHYPSKILRTISKEVVSFDAKLHQQLDDMYETMIASEGIGLAAIQVGLPLRMLIINLPQEDGVQHKEDCLEIINP KFIETGGSMMYKEGCLSVPGFYEEVERFEKVKIEYQNRFAEVKVLEASELLAVAIQHEIDHLNGVLFVDKLSILKRKKFE KELKELQKKQKHKLEHHHHHH A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Helicobacter Escherichia Escherichia coli sample 210 Helicobacter pylori 469008 Escherichia coli BL21(DE3) BL21(DE3) PLASMID PET22B(+) 1 2.45 49.77 VAPOR DIFFUSION, HANGING DROP 7.8 60-70% MPD in 0.1M pH7.8 Hepes, VAPOR DIFFUSION, HANGING DROP, temperature 277K 277 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Refinement description Data collection Database references Derived calculations Refinement description 1 0 2006-10-24 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-10-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Helicobacter Pylori peptide deformylase in complex with inhibitor Helicobacter Pylori peptide deformylase RCSB Y PDBJ 2005-11-02 REL REL CO COBALT (II) ION Y12 4-{(1E)-3-OXO-3-[(2-PHENYLETHYL)AMINO]PROP-1-EN-1-YL}-1,2-PHENYLENE DIACETATE HOH water 1IX1 PDB experimental model CO 300 2 CO CO 300 A Y12 200 3 Y12 Y12 200 A HOH 1 4 HOH HOH 301 A HOH 2 4 HOH HOH 302 A HOH 3 4 HOH HOH 303 A HOH 4 4 HOH HOH 304 A HOH 5 4 HOH HOH 305 A HOH 6 4 HOH HOH 306 A HOH 7 4 HOH HOH 307 A HOH 8 4 HOH HOH 308 A HOH 9 4 HOH HOH 309 A HOH 10 4 HOH HOH 310 A HOH 11 4 HOH HOH 311 A HOH 12 4 HOH HOH 312 A HOH 13 4 HOH HOH 313 A HOH 14 4 HOH HOH 314 A HOH 15 4 HOH HOH 315 A HOH 16 4 HOH HOH 316 A HOH 17 4 HOH HOH 317 A HOH 18 4 HOH HOH 318 A HOH 19 4 HOH HOH 319 A HOH 20 4 HOH HOH 320 A HOH 21 4 HOH HOH 321 A HOH 22 4 HOH HOH 322 A HOH 23 4 HOH HOH 323 A HOH 24 4 HOH HOH 324 A HOH 25 4 HOH HOH 325 A HOH 26 4 HOH HOH 326 A HOH 27 4 HOH HOH 327 A HOH 28 4 HOH HOH 328 A HOH 29 4 HOH HOH 329 A HOH 30 4 HOH HOH 330 A HOH 31 4 HOH HOH 331 A HOH 32 4 HOH HOH 332 A HOH 33 4 HOH HOH 333 A HOH 34 4 HOH HOH 334 A HOH 35 4 HOH HOH 335 A HOH 36 4 HOH HOH 336 A HOH 37 4 HOH HOH 337 A HOH 38 4 HOH HOH 338 A HOH 39 4 HOH HOH 339 A HOH 40 4 HOH HOH 340 A HOH 41 4 HOH HOH 341 A HOH 42 4 HOH HOH 342 A HOH 43 4 HOH HOH 343 A HOH 44 4 HOH HOH 344 A HOH 45 4 HOH HOH 345 A HOH 46 4 HOH HOH 346 A HOH 47 4 HOH HOH 347 A HOH 48 4 HOH HOH 348 A HOH 49 4 HOH HOH 349 A HOH 50 4 HOH HOH 350 A HOH 51 4 HOH HOH 351 A HOH 52 4 HOH HOH 352 A HOH 53 4 HOH HOH 353 A HOH 54 4 HOH HOH 354 A HOH 55 4 HOH HOH 355 A HOH 56 4 HOH HOH 356 A HOH 57 4 HOH HOH 357 A HOH 58 4 HOH HOH 358 A HOH 59 4 HOH HOH 359 A HOH 60 4 HOH HOH 360 A HOH 61 4 HOH HOH 361 A HOH 62 4 HOH HOH 362 A HOH 63 4 HOH HOH 363 A HOH 64 4 HOH HOH 364 A HOH 65 4 HOH HOH 365 A HOH 66 4 HOH HOH 366 A HOH 67 4 HOH HOH 367 A HOH 68 4 HOH HOH 368 A HOH 69 4 HOH HOH 369 A HOH 70 4 HOH HOH 370 A HOH 71 4 HOH HOH 371 A HOH 72 4 HOH HOH 372 A HOH 73 4 HOH HOH 373 A HOH 74 4 HOH HOH 374 A HOH 75 4 HOH HOH 375 A HOH 76 4 HOH HOH 376 A HOH 77 4 HOH HOH 377 A HOH 78 4 HOH HOH 378 A HOH 79 4 HOH HOH 379 A HOH 80 4 HOH HOH 380 A HOH 81 4 HOH HOH 381 A HOH 82 4 HOH HOH 382 A HOH 83 4 HOH HOH 383 A HOH 84 4 HOH HOH 384 A HOH 85 4 HOH HOH 385 A HOH 86 4 HOH HOH 386 A HOH 87 4 HOH HOH 387 A HOH 88 4 HOH HOH 388 A HOH 89 4 HOH HOH 389 A HOH 90 4 HOH HOH 390 A HOH 91 4 HOH HOH 391 A HOH 92 4 HOH HOH 392 A HOH 93 4 HOH HOH 393 A HOH 94 4 HOH HOH 394 A HOH 95 4 HOH HOH 395 A HOH 96 4 HOH HOH 396 A HOH 97 4 HOH HOH 397 A HOH 98 4 HOH HOH 398 A HOH 99 4 HOH HOH 399 A HOH 100 4 HOH HOH 400 A HOH 101 4 HOH HOH 401 A HOH 102 4 HOH HOH 402 A HOH 103 4 HOH HOH 403 A HOH 104 4 HOH HOH 404 A HOH 105 4 HOH HOH 405 A HOH 106 4 HOH HOH 406 A HOH 107 4 HOH HOH 407 A HOH 108 4 HOH HOH 408 A HOH 109 4 HOH HOH 409 A HOH 110 4 HOH HOH 410 A HOH 111 4 HOH HOH 411 A HOH 112 4 HOH HOH 412 A HOH 113 4 HOH HOH 413 A HOH 114 4 HOH HOH 414 A HOH 115 4 HOH HOH 415 A HOH 116 4 HOH HOH 416 A HOH 117 4 HOH HOH 417 A HOH 118 4 HOH HOH 418 A HOH 119 4 HOH HOH 419 A HOH 120 4 HOH HOH 420 A HOH 121 4 HOH HOH 421 A HOH 122 4 HOH HOH 422 A HOH 123 4 HOH HOH 423 A HOH 124 4 HOH HOH 424 A HOH 125 4 HOH HOH 425 A ALA 2 n 1 ALA 2 A LEU 3 n 2 LEU 3 A LEU 4 n 3 LEU 4 A GLU 5 n 4 GLU 5 A ILE 6 n 5 ILE 6 A ILE 7 n 6 ILE 7 A HIS 8 n 7 HIS 8 A TYR 9 n 8 TYR 9 A PRO 10 n 9 PRO 10 A SER 11 n 10 SER 11 A LYS 12 n 11 LYS 12 A ILE 13 n 12 ILE 13 A LEU 14 n 13 LEU 14 A ARG 15 n 14 ARG 15 A THR 16 n 15 THR 16 A ILE 17 n 16 ILE 17 A SER 18 n 17 SER 18 A LYS 19 n 18 LYS 19 A GLU 20 n 19 GLU 20 A VAL 21 n 20 VAL 21 A VAL 22 n 21 VAL 22 A SER 23 n 22 SER 23 A PHE 24 n 23 PHE 24 A ASP 25 n 24 ASP 25 A ALA 26 n 25 ALA 26 A LYS 27 n 26 LYS 27 A LEU 28 n 27 LEU 28 A HIS 29 n 28 HIS 29 A GLN 30 n 29 GLN 30 A GLN 31 n 30 GLN 31 A LEU 32 n 31 LEU 32 A ASP 33 n 32 ASP 33 A ASP 34 n 33 ASP 34 A MET 35 n 34 MET 35 A TYR 36 n 35 TYR 36 A GLU 37 n 36 GLU 37 A THR 38 n 37 THR 38 A MET 39 n 38 MET 39 A ILE 40 n 39 ILE 40 A ALA 41 n 40 ALA 41 A SER 42 n 41 SER 42 A GLU 43 n 42 GLU 43 A GLY 44 n 43 GLY 44 A ILE 45 n 44 ILE 45 A GLY 46 n 45 GLY 46 A LEU 47 n 46 LEU 47 A ALA 48 n 47 ALA 48 A ALA 49 n 48 ALA 49 A ILE 50 n 49 ILE 50 A GLN 51 n 50 GLN 51 A VAL 52 n 51 VAL 52 A GLY 53 n 52 GLY 53 A LEU 54 n 53 LEU 54 A PRO 55 n 54 PRO 55 A LEU 56 n 55 LEU 56 A ARG 57 n 56 ARG 57 A MET 58 n 57 MET 58 A LEU 59 n 58 LEU 59 A ILE 60 n 59 ILE 60 A ILE 61 n 60 ILE 61 A ASN 62 n 61 ASN 62 A LEU 63 n 62 LEU 63 A PRO 64 n 63 PRO 64 A GLN 65 n 64 GLN 65 A GLU 66 n 65 GLU 66 A ASP 67 n 66 ASP 67 A GLY 68 n 67 GLY 68 A VAL 69 n 68 VAL 69 A GLN 70 n 69 GLN 70 A HIS 71 n 70 HIS 71 A LYS 72 n 71 LYS 72 A GLU 73 n 72 GLU 73 A ASP 74 n 73 ASP 74 A CYS 75 n 74 CYS 75 A LEU 76 n 75 LEU 76 A GLU 77 n 76 GLU 77 A ILE 78 n 77 ILE 78 A ILE 79 n 78 ILE 79 A ASN 80 n 79 ASN 80 A PRO 81 n 80 PRO 81 A LYS 82 n 81 LYS 82 A PHE 83 n 82 PHE 83 A ILE 84 n 83 ILE 84 A GLU 85 n 84 GLU 85 A THR 86 n 85 THR 86 A GLY 87 n 86 GLY 87 A GLY 88 n 87 GLY 88 A SER 89 n 88 SER 89 A MET 90 n 89 MET 90 A MET 91 n 90 MET 91 A TYR 92 n 91 TYR 92 A LYS 93 n 92 LYS 93 A GLU 94 n 93 GLU 94 A GLY 95 n 94 GLY 95 A CYS 96 n 95 CYS 96 A LEU 97 n 96 LEU 97 A SER 98 n 97 SER 98 A VAL 99 n 98 VAL 99 A PRO 100 n 99 PRO 100 A GLY 101 n 100 GLY 101 A PHE 102 n 101 PHE 102 A TYR 103 n 102 TYR 103 A GLU 104 n 103 GLU 104 A GLU 105 n 104 GLU 105 A VAL 106 n 105 VAL 106 A GLU 107 n 106 GLU 107 A ARG 108 n 107 ARG 108 A PHE 109 n 108 PHE 109 A GLU 110 n 109 GLU 110 A LYS 111 n 110 LYS 111 A VAL 112 n 111 VAL 112 A LYS 113 n 112 LYS 113 A ILE 114 n 113 ILE 114 A GLU 115 n 114 GLU 115 A TYR 116 n 115 TYR 116 A GLN 117 n 116 GLN 117 A ASN 118 n 117 ASN 118 A ARG 119 n 118 ARG 119 A PHE 120 n 119 PHE 120 A ALA 121 n 120 ALA 121 A GLU 122 n 121 GLU 122 A VAL 123 n 122 VAL 123 A LYS 124 n 123 LYS 124 A VAL 125 n 124 VAL 125 A LEU 126 n 125 LEU 126 A GLU 127 n 126 GLU 127 A ALA 128 n 127 ALA 128 A SER 129 n 128 SER 129 A GLU 130 n 129 GLU 130 A LEU 131 n 130 LEU 131 A LEU 132 n 131 LEU 132 A ALA 133 n 132 ALA 133 A VAL 134 n 133 VAL 134 A ALA 135 n 134 ALA 135 A ILE 136 n 135 ILE 136 A GLN 137 n 136 GLN 137 A HIS 138 n 137 HIS 138 A GLU 139 n 138 GLU 139 A ILE 140 n 139 ILE 140 A ASP 141 n 140 ASP 141 A HIS 142 n 141 HIS 142 A LEU 143 n 142 LEU 143 A ASN 144 n 143 ASN 144 A GLY 145 n 144 GLY 145 A VAL 146 n 145 VAL 146 A LEU 147 n 146 LEU 147 A PHE 148 n 147 PHE 148 A VAL 149 n 148 VAL 149 A ASP 150 n 149 ASP 150 A LYS 151 n 150 LYS 151 A LEU 152 n 151 LEU 152 A SER 153 n 152 SER 153 A ILE 154 n 153 ILE 154 A LEU 155 n 154 LEU 155 A LYS 156 n 155 LYS 156 A ARG 157 n 156 ARG 157 A LYS 158 n 157 LYS 158 A LYS 159 n 158 LYS 159 A PHE 160 n 159 PHE 160 A GLU 161 n 160 GLU 161 A LYS 162 n 161 LYS 162 A GLU 163 n 162 GLU 163 A LEU 164 n 163 LEU 164 A LYS 165 n 164 LYS 165 A GLU 166 n 165 GLU 166 A LEU 167 n 166 LEU 167 A n 167 168 A n 168 169 A n 169 170 A n 170 171 A n 171 172 A n 172 173 A n 173 174 A n 174 175 A n 175 176 A n 176 177 A n 177 178 A n 178 179 A n 179 180 A n 180 181 A n 181 182 A author_defined_assembly 1 monomeric A CYS 96 A SG CYS 95 1_555 A CO 300 B CO CO 1_555 A HIS 138 A NE2 HIS 137 1_555 106.8 A CYS 96 A SG CYS 95 1_555 A CO 300 B CO CO 1_555 A HIS 142 A NE2 HIS 141 1_555 96.8 A HIS 138 A NE2 HIS 137 1_555 A CO 300 B CO CO 1_555 A HIS 142 A NE2 HIS 141 1_555 108.0 A CYS 96 A SG CYS 95 1_555 A CO 300 B CO CO 1_555 A HOH 424 D O HOH 1_555 126.0 A HIS 138 A NE2 HIS 137 1_555 A CO 300 B CO CO 1_555 A HOH 424 D O HOH 1_555 114.4 A HIS 142 A NE2 HIS 141 1_555 A CO 300 B CO CO 1_555 A HOH 424 D O HOH 1_555 101.9 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 47 A N LEU 46 A O ILE 60 A O ILE 59 A N ILE 61 A N ILE 60 A O LEU 76 A O LEU 75 A N ILE 84 A N ILE 83 A O LYS 113 A O LYS 112 A N TYR 116 A N TYR 115 A O LYS 124 A O LYS 123 A N MET 90 A N MET 89 A O ARG 108 A O ARG 107 1 A GLN 168 A GLN 167 1 Y 1 A LYS 169 A LYS 168 1 Y 1 A LYS 170 A LYS 169 1 Y 1 A GLN 171 A GLN 170 1 Y 1 A LYS 172 A LYS 171 1 Y 1 A HIS 173 A HIS 172 1 Y 1 A LYS 174 A LYS 173 1 Y 1 A LEU 175 A LEU 174 1 Y 1 A GLU 176 A GLU 175 1 Y 1 A HIS 177 A HIS 176 1 Y 1 A HIS 178 A HIS 177 1 Y 1 A HIS 179 A HIS 178 1 Y 1 A HIS 180 A HIS 179 1 Y 1 A HIS 181 A HIS 180 1 Y 1 A HIS 182 A HIS 181 1 Y 1 A LYS 72 -46.61 -13.79 1 A VAL 99 -141.90 57.34 1 A TYR 116 -160.69 -168.52 1 A GLU 130 54.34 -138.79 protein_rep.param protein.top water_rep.param lig.top ion.param ion.top lig.param water.top 21.2 -2.89 0.00 0.00 1.63 0.00 1.25 0.254 0.011 0.201 0.213 0.201 2.2 12.0 537 10633 10633 5.1 RANDOM 1 RESTRAINED THROUGHOUT 0.0 MOLECULAR REPLACEMENT 1IX1 Engh & Huber 0.30 0.23 5.00 0.21 0.15 2.2 12.0 125 1487 28 0 1334 0.007 1.2 22.3 0.73 1.31 1.50 2.07 2.00 2.13 2.00 3.19 2.50 0.256 0.029 0.214 2.34 78 1649 6 4.5 97.1 14.2 2.2 12.0 2EW5 10663 10663 1.0 1.0 0.075 1 8.1 3.3 97.7 0.19 2.20 2.28 3.3 1019 3.2 96.6 data reduction TRUNCATE refinement CNS data scaling CCP4 (TRUNCATE) phasing CNS Structure of Helicobacter Pylori peptide deformylase in complex with inhibitor 1 N N 2 N N 3 N N 4 N N A SER 11 A SER 10 HELX_P A THR 16 A THR 15 5 1 6 A ASP 25 A ASP 24 HELX_P A SER 42 A SER 41 1 2 18 A ILE 50 A ILE 49 HELX_P A GLY 53 A GLY 52 5 3 4 A HIS 71 A HIS 70 HELX_P A CYS 75 A CYS 74 5 4 5 A GLU 130 A GLU 129 HELX_P A ASN 144 A ASN 143 1 5 15 A LEU 147 A LEU 146 HELX_P A LEU 152 A LEU 151 5 6 6 A SER 153 A SER 152 HELX_P A LEU 167 A LEU 166 1 7 15 metalc 2.396 A CYS 96 A SG CYS 95 1_555 A CO 300 B CO CO 1_555 metalc 2.217 A HIS 138 A NE2 HIS 137 1_555 A CO 300 B CO CO 1_555 metalc 2.157 A HIS 142 A NE2 HIS 141 1_555 A CO 300 B CO CO 1_555 metalc 2.018 A CO 300 B CO CO 1_555 A HOH 424 D O HOH 1_555 HYDROLASE Cobalt Helicobacter pylori peptide deformylase, inhibitor, HYDROLASE A TYR 9 A TYR 8 1 A PRO 10 A PRO 9 0.38 Q672W7_HELPY UNP 1 2 Q672W7 2 174 2EW5 2 174 Q672W7 A 1 1 173 1 expression tag LEU 175 2EW5 A Q672W7 UNP 174 1 expression tag GLU 176 2EW5 A Q672W7 UNP 175 1 expression tag HIS 177 2EW5 A Q672W7 UNP 176 1 expression tag HIS 178 2EW5 A Q672W7 UNP 177 1 expression tag HIS 179 2EW5 A Q672W7 UNP 178 1 expression tag HIS 180 2EW5 A Q672W7 UNP 179 1 expression tag HIS 181 2EW5 A Q672W7 UNP 180 1 expression tag HIS 182 2EW5 A Q672W7 UNP 181 5 2 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A GLY 46 A GLY 45 A ALA 48 A ALA 47 A MET 58 A MET 57 A ILE 61 A ILE 60 A LEU 76 A LEU 75 A GLY 87 A GLY 86 A LYS 111 A LYS 110 A GLN 117 A GLN 116 A VAL 123 A VAL 122 A SER 129 A SER 128 A MET 90 A MET 89 A GLU 94 A GLU 93 A GLU 104 A GLU 103 A ARG 108 A ARG 107 BINDING SITE FOR RESIDUE CO A 300 A CO 300 Software 5 BINDING SITE FOR RESIDUE Y12 A 200 A Y12 200 Software 15 A GLN 51 A GLN 50 5 1_555 A CYS 96 A CYS 95 5 1_555 A HIS 138 A HIS 137 5 1_555 A HIS 142 A HIS 141 5 1_555 A HOH 424 D HOH 5 1_555 A SER 42 A SER 41 15 1_555 A GLY 44 A GLY 43 15 1_555 A ILE 45 A ILE 44 15 1_555 A GLY 46 A GLY 45 15 1_555 A TYR 92 A TYR 91 15 1_555 A GLU 94 A GLU 93 15 1_555 A GLY 95 A GLY 94 15 1_555 A CYS 96 A CYS 95 15 1_555 A LEU 97 A LEU 96 15 1_555 A PRO 100 A PRO 99 15 1_555 A GLY 101 A GLY 100 15 1_555 A TYR 103 A TYR 102 15 1_555 A LEU 131 A LEU 130 15 1_555 A HIS 138 A HIS 137 15 1_555 A GLU 139 A GLU 138 15 1_555 19 P 21 21 21