0.012954
0.000000
0.003506
0.000000
0.031472
0.000000
0.000000
0.000000
0.030792
0.00000
0.00000
0.00000
Kim, I.K.
Lee, C.J.
Kim, M.K.
Kim, J.M.
Kim, J.H.
Yim, H.S.
Cha, S.S.
Kang, S.O.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
105.14
90.00
77.199
31.774
33.644
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
O
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
N
N
58
S
C
N
59
N
C
N
60
N
O
N
61
N
C
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
N
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
H
N
75
N
H
N
76
N
H
N
77
N
N
N
78
S
C
N
79
N
C
N
80
N
O
N
81
N
C
N
82
N
C
N
83
N
C
N
84
N
O
N
85
N
O
N
86
N
O
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
H
N
95
N
H
N
96
N
N
N
97
N
C
N
98
N
C
N
99
N
O
N
100
N
O
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
N
N
107
S
C
N
108
N
C
N
109
N
O
N
110
N
C
Y
111
N
C
Y
112
N
N
Y
113
N
C
Y
114
N
C
Y
115
N
N
N
116
N
O
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
O
N
128
N
H
N
129
N
H
N
130
N
N
N
131
S
C
N
132
N
C
N
133
N
O
N
134
S
C
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
N
N
153
S
C
N
154
N
C
N
155
N
O
N
156
N
C
N
157
N
C
N
158
N
C
N
159
N
C
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
N
N
175
S
C
N
176
N
C
N
177
N
O
N
178
N
C
N
179
N
C
N
180
N
C
N
181
N
C
N
182
N
N
N
183
N
O
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
N
N
200
S
C
N
201
N
C
N
202
N
O
N
203
N
C
N
204
N
C
N
205
N
S
N
206
N
C
N
207
N
O
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
N
N
220
S
C
N
221
N
C
N
222
N
O
N
223
N
C
Y
224
N
C
Y
225
N
C
Y
226
N
C
Y
227
N
C
Y
228
N
C
Y
229
N
C
N
230
N
O
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
N
N
243
S
C
N
244
N
C
N
245
N
O
N
246
N
C
N
247
N
C
N
248
N
C
N
249
N
O
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
O
N
265
N
O
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
S
N
274
N
O
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
N
N
279
S
C
N
280
N
C
N
281
N
O
N
282
R
C
N
283
N
O
N
284
N
C
N
285
N
O
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
N
Y
304
N
C
Y
305
N
C
Y
306
N
C
Y
307
N
C
Y
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
N
N
323
S
C
N
324
N
C
N
325
N
O
N
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
O
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
N
351
N
C
N
352
N
C
N
353
N
O
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
doub
N
61
N
sing
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
sing
N
67
N
sing
N
68
N
doub
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
sing
N
77
N
sing
N
78
N
sing
N
79
N
doub
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
doub
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
doub
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
Y
111
N
sing
Y
112
N
doub
Y
113
N
doub
N
114
N
sing
Y
115
N
sing
N
116
N
sing
Y
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
doub
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
doub
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
doub
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
doub
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
Y
219
N
doub
Y
220
N
sing
Y
221
N
sing
N
222
N
sing
Y
223
N
doub
N
224
N
sing
Y
225
N
doub
N
226
N
sing
Y
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
doub
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
doub
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
doub
N
262
N
doub
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
doub
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
Y
292
N
doub
Y
293
N
sing
Y
294
N
sing
N
295
N
sing
Y
296
N
doub
Y
297
N
sing
Y
298
N
sing
N
299
N
sing
Y
300
N
sing
Y
301
N
doub
N
302
N
sing
Y
303
N
doub
N
304
N
sing
Y
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
doub
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
Y
320
N
doub
Y
321
N
sing
Y
322
N
sing
N
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
doub
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
UK
Mol.Microbiol.
MOMIEE
2007
0950-382X
60
1179
1193
10.1111/j.1365-2958.2006.05176.x
16689794
Crystal structure of the DNA-binding domain of BldD, a central regulator of aerial mycelium formation in Streptomyces coelicolor A3(2)
2006
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
60
1115
1117
10.1107/S0907444904006961
15159573
Crystallization and preliminary X-ray crystallographic analysis of the DNA-binding domain of BldD from Streptomyces coelicolor A3(2)
2004
10.2210/pdb2ewt/pdb
pdb_00002ewt
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
IMAGE PLATE
2003-12-05
MAC Science DIP-2030B
Si
MAD
M
x-ray
1
0.97932
1.0
0.97942
1.0
0.98722
1.0
6B
PAL/PLS
0.97932, 0.97942, 0.98722
SYNCHROTRON
PAL/PLS BEAMLINE 6B
7883.973
putative DNA-binding protein
DNA-binding domain
1
man
polymer
96.063
SULFATE ION
3
syn
non-polymer
18.015
water
147
nat
water
BldD
no
no
MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP
MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Streptomyces
Streptomyces coelicolor
A3(2)
Escherichia
Escherichia coli
sample
100226
Streptomyces coelicolor
511693
Escherichia coli BL21
BL21
plasmid
pET15b
1
2.53
51.29
VAPOR DIFFUSION, HANGING DROP
4.6
25% PEG 4000, 0.1M sodium acetate (pH 4.6), 0.2M ammonium sulfate, VAPOR DIFFUSION, HANGING DROP, temperature 296K
296
chem_comp_atom
chem_comp_bond
database_2
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-06-13
1
1
2008-05-01
1
2
2011-07-13
1
3
2024-03-13
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
PDBJ
2005-11-07
REL
REL
SO4
SULFATE ION
HOH
water
SO4
1
2
SO4
SO4
2001
A
SO4
2
2
SO4
SO4
2002
A
SO4
15
2
SO4
SO4
2015
A
HOH
1
3
HOH
HOH
2016
A
HOH
2
3
HOH
HOH
2017
A
HOH
3
3
HOH
HOH
2018
A
HOH
4
3
HOH
HOH
2019
A
HOH
5
3
HOH
HOH
2020
A
HOH
6
3
HOH
HOH
2021
A
HOH
7
3
HOH
HOH
2022
A
HOH
8
3
HOH
HOH
2023
A
HOH
9
3
HOH
HOH
2024
A
HOH
10
3
HOH
HOH
2025
A
HOH
11
3
HOH
HOH
2026
A
HOH
12
3
HOH
HOH
2027
A
HOH
13
3
HOH
HOH
2028
A
HOH
14
3
HOH
HOH
2029
A
HOH
15
3
HOH
HOH
2030
A
HOH
16
3
HOH
HOH
2031
A
HOH
17
3
HOH
HOH
2032
A
HOH
18
3
HOH
HOH
2033
A
HOH
19
3
HOH
HOH
2034
A
HOH
20
3
HOH
HOH
2035
A
HOH
21
3
HOH
HOH
2036
A
HOH
22
3
HOH
HOH
2037
A
HOH
23
3
HOH
HOH
2038
A
HOH
24
3
HOH
HOH
2039
A
HOH
25
3
HOH
HOH
2040
A
HOH
26
3
HOH
HOH
2041
A
HOH
27
3
HOH
HOH
2042
A
HOH
28
3
HOH
HOH
2043
A
HOH
29
3
HOH
HOH
2044
A
HOH
30
3
HOH
HOH
2045
A
HOH
31
3
HOH
HOH
2046
A
HOH
32
3
HOH
HOH
2047
A
HOH
33
3
HOH
HOH
2048
A
HOH
34
3
HOH
HOH
2049
A
HOH
35
3
HOH
HOH
2050
A
HOH
36
3
HOH
HOH
2051
A
HOH
37
3
HOH
HOH
2052
A
HOH
38
3
HOH
HOH
2053
A
HOH
39
3
HOH
HOH
2054
A
HOH
40
3
HOH
HOH
2055
A
HOH
41
3
HOH
HOH
2056
A
HOH
42
3
HOH
HOH
2057
A
HOH
43
3
HOH
HOH
2058
A
HOH
44
3
HOH
HOH
2059
A
HOH
45
3
HOH
HOH
2060
A
HOH
46
3
HOH
HOH
2061
A
HOH
47
3
HOH
HOH
2062
A
HOH
48
3
HOH
HOH
2063
A
HOH
49
3
HOH
HOH
2064
A
HOH
50
3
HOH
HOH
2065
A
HOH
51
3
HOH
HOH
2066
A
HOH
52
3
HOH
HOH
2067
A
HOH
53
3
HOH
HOH
2068
A
HOH
54
3
HOH
HOH
2069
A
HOH
55
3
HOH
HOH
2070
A
HOH
56
3
HOH
HOH
2071
A
HOH
57
3
HOH
HOH
2072
A
HOH
58
3
HOH
HOH
2073
A
HOH
59
3
HOH
HOH
2074
A
HOH
60
3
HOH
HOH
2075
A
HOH
61
3
HOH
HOH
2076
A
HOH
62
3
HOH
HOH
2077
A
HOH
64
3
HOH
HOH
2078
A
HOH
65
3
HOH
HOH
2079
A
HOH
66
3
HOH
HOH
2080
A
HOH
67
3
HOH
HOH
2081
A
HOH
68
3
HOH
HOH
2082
A
HOH
69
3
HOH
HOH
2083
A
HOH
70
3
HOH
HOH
2084
A
HOH
71
3
HOH
HOH
2085
A
HOH
72
3
HOH
HOH
2086
A
HOH
73
3
HOH
HOH
2087
A
HOH
74
3
HOH
HOH
2088
A
HOH
75
3
HOH
HOH
2089
A
HOH
76
3
HOH
HOH
2090
A
HOH
78
3
HOH
HOH
2091
A
HOH
79
3
HOH
HOH
2092
A
HOH
80
3
HOH
HOH
2093
A
HOH
81
3
HOH
HOH
2094
A
HOH
84
3
HOH
HOH
2095
A
HOH
85
3
HOH
HOH
2096
A
HOH
86
3
HOH
HOH
2097
A
HOH
87
3
HOH
HOH
2098
A
HOH
88
3
HOH
HOH
2099
A
HOH
89
3
HOH
HOH
2100
A
HOH
90
3
HOH
HOH
2101
A
HOH
91
3
HOH
HOH
2102
A
HOH
92
3
HOH
HOH
2103
A
HOH
93
3
HOH
HOH
2104
A
HOH
94
3
HOH
HOH
2105
A
HOH
95
3
HOH
HOH
2106
A
HOH
96
3
HOH
HOH
2107
A
HOH
97
3
HOH
HOH
2108
A
HOH
98
3
HOH
HOH
2109
A
HOH
99
3
HOH
HOH
2110
A
HOH
100
3
HOH
HOH
2111
A
HOH
102
3
HOH
HOH
2112
A
HOH
103
3
HOH
HOH
2113
A
HOH
104
3
HOH
HOH
2114
A
HOH
105
3
HOH
HOH
2115
A
HOH
106
3
HOH
HOH
2116
A
HOH
107
3
HOH
HOH
2117
A
HOH
108
3
HOH
HOH
2118
A
HOH
109
3
HOH
HOH
2119
A
HOH
110
3
HOH
HOH
2120
A
HOH
111
3
HOH
HOH
2121
A
HOH
112
3
HOH
HOH
2122
A
HOH
113
3
HOH
HOH
2123
A
HOH
114
3
HOH
HOH
2124
A
HOH
115
3
HOH
HOH
2125
A
HOH
117
3
HOH
HOH
2126
A
HOH
118
3
HOH
HOH
2127
A
HOH
119
3
HOH
HOH
2128
A
HOH
120
3
HOH
HOH
2129
A
HOH
121
3
HOH
HOH
2130
A
HOH
122
3
HOH
HOH
2131
A
HOH
123
3
HOH
HOH
2132
A
HOH
124
3
HOH
HOH
2133
A
HOH
125
3
HOH
HOH
2134
A
HOH
126
3
HOH
HOH
2135
A
HOH
128
3
HOH
HOH
2136
A
HOH
129
3
HOH
HOH
2137
A
HOH
130
3
HOH
HOH
2138
A
HOH
131
3
HOH
HOH
2139
A
HOH
132
3
HOH
HOH
2140
A
HOH
133
3
HOH
HOH
2141
A
HOH
134
3
HOH
HOH
2142
A
HOH
136
3
HOH
HOH
2143
A
HOH
137
3
HOH
HOH
2144
A
HOH
138
3
HOH
HOH
2145
A
HOH
139
3
HOH
HOH
2146
A
HOH
140
3
HOH
HOH
2147
A
HOH
141
3
HOH
HOH
2148
A
HOH
142
3
HOH
HOH
2149
A
HOH
143
3
HOH
HOH
2150
A
HOH
3
3
HOH
HOH
2151
A
HOH
4
3
HOH
HOH
2152
A
HOH
5
3
HOH
HOH
2153
A
HOH
6
3
HOH
HOH
2154
A
HOH
7
3
HOH
HOH
2155
A
HOH
8
3
HOH
HOH
2156
A
HOH
9
3
HOH
HOH
2157
A
HOH
10
3
HOH
HOH
2158
A
HOH
11
3
HOH
HOH
2159
A
HOH
12
3
HOH
HOH
2160
A
HOH
13
3
HOH
HOH
2161
A
HOH
14
3
HOH
HOH
2162
A
MET
1
n
1
MET
1
A
SER
2
n
2
SER
2
A
SER
3
n
3
SER
3
A
GLU
4
n
4
GLU
4
A
TYR
5
n
5
TYR
5
A
ALA
6
n
6
ALA
6
A
ALA
7
n
7
LYS
7
A
GLN
8
n
8
GLN
8
A
LEU
9
n
9
LEU
9
A
GLY
10
n
10
GLY
10
A
ALA
11
n
11
ALA
11
A
LYS
12
n
12
LYS
12
A
LEU
13
n
13
LEU
13
A
ARG
14
n
14
ARG
14
A
ALA
15
n
15
ALA
15
A
ILE
16
n
16
ILE
16
A
ARG
17
n
17
ARG
17
A
THR
18
n
18
THR
18
A
GLN
19
n
19
GLN
19
A
GLN
20
n
20
GLN
20
A
GLY
21
n
21
GLY
21
A
LEU
22
n
22
LEU
22
A
SER
23
n
23
SER
23
A
LEU
24
n
24
LEU
24
A
HIS
25
n
25
HIS
25
A
GLY
26
n
26
GLY
26
A
VAL
27
n
27
VAL
27
A
GLU
28
n
28
GLU
28
A
GLU
29
n
29
GLU
29
A
LYS
30
n
30
LYS
30
A
SER
31
n
31
SER
31
A
GLN
32
n
32
GLN
32
A
GLY
33
n
33
GLY
33
A
ARG
34
n
34
ARG
34
A
TRP
35
n
35
TRP
35
A
LYS
36
n
36
LYS
36
A
ALA
37
n
37
ALA
37
A
VAL
38
n
38
VAL
38
A
VAL
39
n
39
VAL
39
A
VAL
40
n
40
VAL
40
A
GLY
41
n
41
GLY
41
A
SER
42
n
42
SER
42
A
TYR
43
n
43
TYR
43
A
GLU
44
n
44
GLU
44
A
ARG
45
n
45
ARG
45
A
GLY
46
n
46
GLY
46
A
ASP
47
n
47
ASP
47
A
ARG
48
n
48
ARG
48
A
ALA
49
n
49
ALA
49
A
VAL
50
n
50
VAL
50
A
THR
51
n
51
THR
51
A
VAL
52
n
52
VAL
52
A
GLN
53
n
53
GLN
53
A
ARG
54
n
54
ARG
54
A
LEU
55
n
55
LEU
55
A
ALA
56
n
56
ALA
56
A
GLU
57
n
57
GLU
57
A
LEU
58
n
58
LEU
58
A
ALA
59
n
59
ALA
59
A
ASP
60
n
60
ASP
60
A
PHE
61
n
61
PHE
61
A
TYR
62
n
62
TYR
62
A
GLY
63
n
63
GLY
63
A
VAL
64
n
64
VAL
64
A
PRO
65
n
65
PRO
65
A
VAL
66
n
66
VAL
66
A
GLN
67
n
67
GLN
67
A
GLU
68
n
68
GLU
68
A
LEU
69
n
69
LEU
69
A
LEU
70
n
70
LEU
70
A
PRO
71
n
71
PRO
71
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
2_557
-x,y,-z+2
crystal symmetry operation
-17.5741770343
0.0000000000
64.9524691260
1
A
CG
LYS
7
A
CG
LYS
7
1
Y
1
A
CD
LYS
7
A
CD
LYS
7
1
Y
1
A
CE
LYS
7
A
CE
LYS
7
1
Y
1
A
NZ
LYS
7
A
NZ
LYS
7
1
Y
protein_rep.param
protein.top
water_rep.param
water_rep.top
ion.param
ion.top
18.3
0.97
0.00
0.04
0.86
0.00
-1.83
0.225
0.012
0.188
0.188
1.81
19.57
381
7441
7031
5.4
94.5
RANDOM
1438212.22
0.000000
1
RESTRAINED
THROUGHOUT
0.0
MAD
Engh & Huber
FLAT MODEL
54.3987
0.351951
0.24
0.18
5.00
0.25
0.04
1.81
19.57
147
713
15
0
551
0.004
1.0
17.4
0.74
0.186
1.91
999
6
82.1
14.7
1.8
20
2EWT
7441
7031
0
0
1
94.5
1.8
1.86
1
94.9
refinement
CNS
1.1
data reduction
DENZO
data scaling
SCALEPACK
phasing
SOLVE
Crystal structure of the DNA-binding domain of BldD
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
The second part of the biological assembly is generated
by the two fold axis: -x+1, -y, z+3/2
A
SER
2
A
SER
2
HELX_P
A
GLN
20
A
GLN
20
1
1
19
A
SER
23
A
SER
23
HELX_P
A
SER
31
A
SER
31
1
2
9
A
LYS
36
A
LYS
36
HELX_P
A
ARG
45
A
ARG
45
1
3
10
A
THR
51
A
THR
51
HELX_P
A
GLY
63
A
GLY
63
1
4
13
A
PRO
65
A
PRO
65
HELX_P
A
LEU
70
A
LEU
70
5
5
6
DNA BINDING PROTEIN
the DNA-binding domain of BldD, DNA BINDING PROTEIN
NP_625769
GB
1
1
21219990
MSSEYAKQLGAKLRAIRTQQGLSLHGVEEKSQGRWKAVVVGSYERGDRAVTVQRLAELADFYGVPVQELLP
1
71
2EWT
1
71
21219990
A
1
1
71
BINDING SITE FOR RESIDUE SO4 A 2001
A
SO4
2001
Software
5
BINDING SITE FOR RESIDUE SO4 A 2002
A
SO4
2002
Software
6
BINDING SITE FOR RESIDUE SO4 A 2015
A
SO4
2015
Software
8
A
ARG
45
A
ARG
45
5
1_555
A
HOH
2063
E
HOH
5
1_555
A
HOH
2069
E
HOH
5
1_555
A
HOH
2111
E
HOH
5
1_545
A
HOH
2151
E
HOH
5
1_555
A
TYR
43
A
TYR
43
6
1_555
A
ARG
48
A
ARG
48
6
1_555
A
ARG
54
A
ARG
54
6
1_555
A
HOH
2049
E
HOH
6
1_555
A
HOH
2077
E
HOH
6
1_555
A
HOH
2121
E
HOH
6
1_555
A
SER
2
A
SER
2
8
1_555
A
SER
3
A
SER
3
8
1_555
A
LYS
36
A
LYS
36
8
1_554
A
HOH
2059
E
HOH
8
1_555
A
HOH
2081
E
HOH
8
1_554
A
HOH
2125
E
HOH
8
1_555
A
HOH
2126
E
HOH
8
1_555
A
HOH
2157
E
HOH
8
1_554
5
C 1 2 1