data_2F8W # _entry.id 2F8W # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2F8W pdb_00002f8w 10.2210/pdb2f8w/pdb NDB ZD0016 ? ? RCSB RCSB035597 ? ? WWPDB D_1000035597 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2F8W _pdbx_database_status.recvd_initial_deposition_date 2005-12-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry N _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Narayana, N.' 1 'Shamala, N.' 2 'Ganesh, K.N.' 3 'Viswamitra, M.A.' 4 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Interaction between the Z-Type DNA Duplex and 1,3-Propanediamine: Crystal Structure of d(CACGTG)2 at 1.2 A Resolution' Biochemistry 45 1200 1211 2006 BICHAW US 0006-2960 0033 ? 16430216 10.1021/bi051569l 1 'Structure of the pure-spermine form of Z-DNA (magnesium free) at 1-resolution' Biochemistry 30 11388 11402 1991 BICHAW US 0006-2960 0033 ? ? ? 2 'Structure of d(TGCGCA)2 at 293 K: comparison of the effects of sequence and temperature' 'Acta Crystallogr.,Sect.D' 58 1381 1384 2002 ABCRE6 DK 0907-4449 0766 ? ? ? 3 ;Sequence-dependent microheterogeneity of Z-DNA: The crystal and molecular structures of d(CACGCG).d(CGCGTG) and d(CGCACG).d(CGTGCG) ; J.Mol.Biol. 248 918 930 1995 JMOBAK UK 0022-2836 0070 ? ? ? 4 'Cobalt hexammine induced tautomeric shift in Z-DNA: the structure of d(CGCGCA)*d(TGCGCG) in two crystal forms' 'Nucleic Acids Res.' 32 5945 5953 2004 NARHAD UK 0305-1048 0389 ? ? ? 5 'Structure of d(TGCGCA)2 and a comparison to other DNA hexamers.' 'Acta Crystallogr.,Sect.D' 54 1273 1284 1998 ABCRE6 DK 0907-4449 0766 ? ? ? 6 'Structure of d(CACGTG), Z-DNA hexamer containing AT base pairs' 'Nucleic Acids Res.' 16 8695 8705 1988 NARHAD UK 0305-1048 0389 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Narayana, N.' 1 ? primary 'Shamala, N.' 2 ? primary 'Ganesh, K.N.' 3 ? primary 'Viswamitra, M.A.' 4 ? 1 'Egli, M.' 5 ? 1 'Williams, L.D.' 6 ? 1 'Gao, Q.' 7 ? 1 'Rich, A.' 8 ? 2 'Thiyagarajan, S.' 9 ? 2 'Satheesh Kumar, P.' 10 ? 2 'Rajan, S.S.' 11 ? 2 'Gautham, N.' 12 ? 3 'Sadasivan, C.' 13 ? 3 'Gautham, N.' 14 ? 4 'Thiyagarajan, S.' 15 ? 4 'Rajan, S.S.' 16 ? 4 'Gautham, N.' 17 ? 5 'Harper, A.' 18 ? 5 'Brannigan, J.A.' 19 ? 5 'Buck, M.' 20 ? 5 'Hewitt, L.' 21 ? 5 'Lewis, R.J.' 22 ? 5 'Moore, M.H.' 23 ? 5 'Schneider, B.' 24 ? 6 'Coll, M.' 25 ? 6 'Fita, I.' 26 ? 6 'Lloveras, J.' 27 ? 6 'Subirana, J.A.' 28 ? 6 'Bardella, F.' 29 ? 6 'Huynh-Dinh, T.' 30 ? 6 'Igolen, J.' 31 ? # _cell.entry_id 2F8W _cell.length_a 18.420 _cell.length_b 30.740 _cell.length_c 43.180 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2F8W _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*AP*CP*GP*TP*G)-3'" 1809.217 2 ? ? ? ? 2 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 3 non-polymer syn 1,3-DIAMINOPROPANE 74.125 1 ? ? ? ? 4 water nat water 18.015 71 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DA)(DC)(DG)(DT)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CACGTG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DA n 1 3 DC n 1 4 DG n 1 5 DT n 1 6 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'synthetic oligonucleotide' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2F8W _struct_ref.pdbx_db_accession 2F8W _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2F8W A 1 ? 6 ? 2F8W 1 ? 6 ? 1 6 2 1 2F8W B 1 ? 6 ? 2F8W 7 ? 12 ? 7 12 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 13D non-polymer . 1,3-DIAMINOPROPANE ? 'C3 H10 N2' 74.125 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # _exptl.entry_id 2F8W _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.71 _exptl_crystal.density_percent_sol 28.0 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details '7.5 mM sodium cacodylate, 2.5 mM SrCl2, 2.5 mM spermine, 50% Isopropanol, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 'sodium cacodylate' ? ? ? 1 2 1 SrCl2 ? ? ? 1 3 1 spermine ? ? ? 1 4 1 Isopropanol ? ? ? 1 5 1 H2O ? ? ? 1 6 2 'sodium cacodylate' ? ? ? 1 7 2 SrCl2 ? ? ? 1 8 2 H2O ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 291 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector DIFFRACTOMETER _diffrn_detector.type 'ENRAF-NONIUS CAD4' _diffrn_detector.pdbx_collection_date 1987-02-04 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ENRAF-NONIUS _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 2F8W _reflns.observed_criterion_sigma_I 4.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50.0 _reflns.d_resolution_high 1.2 _reflns.number_obs 5687 _reflns.number_all 8124 _reflns.percent_possible_obs 70 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.042 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2F8W _refine.ls_number_reflns_obs 5687 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I 4.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 6.0 _refine.ls_d_res_high 1.2 _refine.ls_percent_reflns_obs 70.0 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_all 0.183 _refine.ls_R_factor_R_work 0.18 _refine.ls_R_factor_R_free 0.215 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 1.5 _refine.ls_number_reflns_R_free 93 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 14.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details X-PLOR _refine.pdbx_starting_model 'PDB entry 1D48' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model Isotropic _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 240 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 71 _refine_hist.number_atoms_total 330 _refine_hist.d_res_high 1.2 _refine_hist.d_res_low 6.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.013 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.18 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_deg 32.14 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_deg 1.32 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 2F8W _struct.title 'Crystal structure of d(CACGTG)2' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2F8W _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'd(CACGTG), Polyamine, Z-DNA, 1, 3-propanediamine, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ;The biological assembly is a duplex. The coordinates deposited will generate the biological assembly. There is no need for symmetry operations to generate the biological assembly. ; _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 6 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 6 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 6 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DA 2 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DA 2 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 2 B DT 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 5 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 5 B DA 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DG 6 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 6 B DC 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A SPM 13 ? 17 'BINDING SITE FOR RESIDUE SPM A 13' AC2 Software B 13D 85 ? 11 'BINDING SITE FOR RESIDUE 13D B 85' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 17 DA A 2 ? DA A 2 . ? 1_555 ? 2 AC1 17 DC A 3 ? DC A 3 . ? 1_555 ? 3 AC1 17 DG A 4 ? DG A 4 . ? 1_555 ? 4 AC1 17 HOH E . ? HOH A 17 . ? 4_566 ? 5 AC1 17 HOH E . ? HOH A 19 . ? 1_555 ? 6 AC1 17 HOH E . ? HOH A 36 . ? 1_555 ? 7 AC1 17 HOH E . ? HOH A 73 . ? 4_556 ? 8 AC1 17 HOH E . ? HOH A 80 . ? 4_566 ? 9 AC1 17 DA B 2 ? DA B 8 . ? 1_555 ? 10 AC1 17 DC B 3 ? DC B 9 . ? 4_556 ? 11 AC1 17 DG B 4 ? DG B 10 . ? 1_655 ? 12 AC1 17 DG B 4 ? DG B 10 . ? 4_556 ? 13 AC1 17 DT B 5 ? DT B 11 . ? 1_655 ? 14 AC1 17 DG B 6 ? DG B 12 . ? 1_655 ? 15 AC1 17 HOH F . ? HOH B 68 . ? 4_556 ? 16 AC1 17 HOH F . ? HOH B 69 . ? 4_556 ? 17 AC1 17 HOH F . ? HOH B 76 . ? 4_556 ? 18 AC2 11 DG A 4 ? DG A 4 . ? 4_466 ? 19 AC2 11 DT A 5 ? DT A 5 . ? 4_466 ? 20 AC2 11 DG A 6 ? DG A 6 . ? 1_555 ? 21 AC2 11 HOH E . ? HOH A 46 . ? 4_466 ? 22 AC2 11 HOH E . ? HOH A 80 . ? 4_466 ? 23 AC2 11 DC B 3 ? DC B 9 . ? 1_555 ? 24 AC2 11 DG B 4 ? DG B 10 . ? 1_555 ? 25 AC2 11 HOH F . ? HOH B 47 . ? 1_555 ? 26 AC2 11 HOH F . ? HOH B 82 . ? 1_555 ? 27 AC2 11 HOH F . ? HOH B 83 . ? 1_555 ? 28 AC2 11 HOH F . ? HOH B 84 . ? 1_555 ? # _database_PDB_matrix.entry_id 2F8W _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2F8W _atom_sites.fract_transf_matrix[1][1] 0.054290 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032531 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023159 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DC A 1 1 ? 18.759 10.868 34.495 1.00 22.52 ? 1 DC A "O5'" 1 ATOM 2 C "C5'" . DC A 1 1 ? 19.313 11.957 33.752 1.00 18.84 ? 1 DC A "C5'" 1 ATOM 3 C "C4'" . DC A 1 1 ? 18.253 12.993 33.402 1.00 5.80 ? 1 DC A "C4'" 1 ATOM 4 O "O4'" . DC A 1 1 ? 17.129 12.398 32.750 1.00 8.83 ? 1 DC A "O4'" 1 ATOM 5 C "C3'" . DC A 1 1 ? 17.739 13.749 34.602 1.00 8.22 ? 1 DC A "C3'" 1 ATOM 6 O "O3'" . DC A 1 1 ? 17.706 15.144 34.321 1.00 10.61 ? 1 DC A "O3'" 1 ATOM 7 C "C2'" . DC A 1 1 ? 16.323 13.238 34.730 1.00 9.10 ? 1 DC A "C2'" 1 ATOM 8 C "C1'" . DC A 1 1 ? 15.923 12.958 33.302 1.00 6.03 ? 1 DC A "C1'" 1 ATOM 9 N N1 . DC A 1 1 ? 14.769 12.012 33.241 1.00 5.74 ? 1 DC A N1 1 ATOM 10 C C2 . DC A 1 1 ? 13.496 12.550 33.338 1.00 4.27 ? 1 DC A C2 1 ATOM 11 O O2 . DC A 1 1 ? 13.331 13.767 33.443 1.00 7.53 ? 1 DC A O2 1 ATOM 12 N N3 . DC A 1 1 ? 12.428 11.717 33.329 1.00 3.98 ? 1 DC A N3 1 ATOM 13 C C4 . DC A 1 1 ? 12.590 10.400 33.286 1.00 5.68 ? 1 DC A C4 1 ATOM 14 N N4 . DC A 1 1 ? 11.493 9.648 33.283 1.00 6.84 ? 1 DC A N4 1 ATOM 15 C C5 . DC A 1 1 ? 13.897 9.813 33.213 1.00 4.88 ? 1 DC A C5 1 ATOM 16 C C6 . DC A 1 1 ? 14.944 10.662 33.168 1.00 4.73 ? 1 DC A C6 1 ATOM 17 P P . DA A 1 2 ? 18.971 16.114 34.545 1.00 11.64 ? 2 DA A P 1 ATOM 18 O OP1 . DA A 1 2 ? 19.630 15.777 35.827 1.00 14.80 ? 2 DA A OP1 1 ATOM 19 O OP2 . DA A 1 2 ? 18.430 17.476 34.344 1.00 13.66 ? 2 DA A OP2 1 ATOM 20 O "O5'" . DA A 1 2 ? 20.021 15.810 33.383 1.00 10.20 ? 2 DA A "O5'" 1 ATOM 21 C "C5'" . DA A 1 2 ? 19.753 16.181 32.012 1.00 11.87 ? 2 DA A "C5'" 1 ATOM 22 C "C4'" . DA A 1 2 ? 20.908 15.719 31.134 1.00 6.60 ? 2 DA A "C4'" 1 ATOM 23 O "O4'" . DA A 1 2 ? 21.062 14.321 31.379 1.00 9.63 ? 2 DA A "O4'" 1 ATOM 24 C "C3'" . DA A 1 2 ? 20.705 15.943 29.613 1.00 5.13 ? 2 DA A "C3'" 1 ATOM 25 O "O3'" . DA A 1 2 ? 21.502 17.054 29.192 1.00 6.73 ? 2 DA A "O3'" 1 ATOM 26 C "C2'" . DA A 1 2 ? 21.324 14.689 29.026 1.00 7.90 ? 2 DA A "C2'" 1 ATOM 27 C "C1'" . DA A 1 2 ? 21.285 13.636 30.141 1.00 6.60 ? 2 DA A "C1'" 1 ATOM 28 N N9 . DA A 1 2 ? 20.310 12.536 29.963 1.00 8.64 ? 2 DA A N9 1 ATOM 29 C C8 . DA A 1 2 ? 20.596 11.212 30.104 1.00 7.51 ? 2 DA A C8 1 ATOM 30 N N7 . DA A 1 2 ? 19.568 10.423 30.026 1.00 9.74 ? 2 DA A N7 1 ATOM 31 C C5 . DA A 1 2 ? 18.500 11.282 29.886 1.00 6.88 ? 2 DA A C5 1 ATOM 32 C C6 . DA A 1 2 ? 17.121 11.064 29.858 1.00 7.01 ? 2 DA A C6 1 ATOM 33 N N6 . DA A 1 2 ? 16.567 9.862 29.986 1.00 12.35 ? 2 DA A N6 1 ATOM 34 N N1 . DA A 1 2 ? 16.323 12.119 29.708 1.00 5.92 ? 2 DA A N1 1 ATOM 35 C C2 . DA A 1 2 ? 16.875 13.336 29.710 1.00 3.23 ? 2 DA A C2 1 ATOM 36 N N3 . DA A 1 2 ? 18.154 13.684 29.711 1.00 5.04 ? 2 DA A N3 1 ATOM 37 C C4 . DA A 1 2 ? 18.934 12.586 29.861 1.00 7.89 ? 2 DA A C4 1 ATOM 38 P P . DC A 1 3 ? 20.919 18.520 29.015 1.00 5.01 ? 3 DC A P 1 ATOM 39 O OP1 . DC A 1 3 ? 22.123 19.339 28.714 1.00 6.06 ? 3 DC A OP1 1 ATOM 40 O OP2 . DC A 1 3 ? 20.024 18.852 30.141 1.00 12.68 ? 3 DC A OP2 1 ATOM 41 O "O5'" . DC A 1 3 ? 20.088 18.260 27.682 1.00 6.57 ? 3 DC A "O5'" 1 ATOM 42 C "C5'" . DC A 1 3 ? 19.767 19.377 26.849 1.00 6.38 ? 3 DC A "C5'" 1 ATOM 43 C "C4'" . DC A 1 3 ? 18.369 19.255 26.279 1.00 5.00 ? 3 DC A "C4'" 1 ATOM 44 O "O4'" . DC A 1 3 ? 18.217 18.001 25.589 1.00 5.81 ? 3 DC A "O4'" 1 ATOM 45 C "C3'" . DC A 1 3 ? 17.306 19.339 27.361 1.00 3.83 ? 3 DC A "C3'" 1 ATOM 46 O "O3'" . DC A 1 3 ? 16.121 19.939 26.874 1.00 5.83 ? 3 DC A "O3'" 1 ATOM 47 C "C2'" . DC A 1 3 ? 16.971 17.887 27.542 1.00 4.58 ? 3 DC A "C2'" 1 ATOM 48 C "C1'" . DC A 1 3 ? 17.095 17.301 26.134 1.00 3.15 ? 3 DC A "C1'" 1 ATOM 49 N N1 . DC A 1 3 ? 17.370 15.837 26.160 1.00 5.25 ? 3 DC A N1 1 ATOM 50 C C2 . DC A 1 3 ? 16.300 14.946 26.185 1.00 4.17 ? 3 DC A C2 1 ATOM 51 O O2 . DC A 1 3 ? 15.139 15.357 26.187 1.00 8.26 ? 3 DC A O2 1 ATOM 52 N N3 . DC A 1 3 ? 16.539 13.615 26.231 1.00 5.70 ? 3 DC A N3 1 ATOM 53 C C4 . DC A 1 3 ? 17.792 13.153 26.280 1.00 5.27 ? 3 DC A C4 1 ATOM 54 N N4 . DC A 1 3 ? 17.983 11.832 26.434 1.00 5.52 ? 3 DC A N4 1 ATOM 55 C C5 . DC A 1 3 ? 18.912 14.047 26.186 1.00 3.57 ? 3 DC A C5 1 ATOM 56 C C6 . DC A 1 3 ? 18.655 15.365 26.152 1.00 7.99 ? 3 DC A C6 1 ATOM 57 P P . DG A 1 4 ? 15.829 21.488 26.948 1.00 7.53 ? 4 DG A P 1 ATOM 58 O OP1 . DG A 1 4 ? 16.313 21.978 28.251 1.00 12.43 ? 4 DG A OP1 1 ATOM 59 O OP2 . DG A 1 4 ? 14.410 21.672 26.572 1.00 11.18 ? 4 DG A OP2 1 ATOM 60 O "O5'" . DG A 1 4 ? 16.725 22.197 25.831 1.00 7.19 ? 4 DG A "O5'" 1 ATOM 61 C "C5'" . DG A 1 4 ? 16.423 22.030 24.437 1.00 7.66 ? 4 DG A "C5'" 1 ATOM 62 C "C4'" . DG A 1 4 ? 17.597 22.519 23.603 1.00 6.41 ? 4 DG A "C4'" 1 ATOM 63 O "O4'" . DG A 1 4 ? 18.770 21.800 23.991 1.00 5.50 ? 4 DG A "O4'" 1 ATOM 64 C "C3'" . DG A 1 4 ? 17.377 22.284 22.113 1.00 8.77 ? 4 DG A "C3'" 1 ATOM 65 O "O3'" . DG A 1 4 ? 16.845 23.492 21.571 1.00 6.05 ? 4 DG A "O3'" 1 ATOM 66 C "C2'" . DG A 1 4 ? 18.799 22.108 21.621 1.00 7.43 ? 4 DG A "C2'" 1 ATOM 67 C "C1'" . DG A 1 4 ? 19.593 21.622 22.824 1.00 6.20 ? 4 DG A "C1'" 1 ATOM 68 N N9 . DG A 1 4 ? 20.082 20.227 22.721 1.00 3.37 ? 4 DG A N9 1 ATOM 69 C C8 . DG A 1 4 ? 21.387 19.833 22.732 1.00 2.78 ? 4 DG A C8 1 ATOM 70 N N7 . DG A 1 4 ? 21.557 18.548 22.706 1.00 6.44 ? 4 DG A N7 1 ATOM 71 C C5 . DG A 1 4 ? 20.268 18.039 22.654 1.00 4.03 ? 4 DG A C5 1 ATOM 72 C C6 . DG A 1 4 ? 19.818 16.709 22.597 1.00 2.93 ? 4 DG A C6 1 ATOM 73 O O6 . DG A 1 4 ? 20.538 15.691 22.573 1.00 4.91 ? 4 DG A O6 1 ATOM 74 N N1 . DG A 1 4 ? 18.439 16.614 22.561 1.00 3.49 ? 4 DG A N1 1 ATOM 75 C C2 . DG A 1 4 ? 17.569 17.685 22.574 1.00 3.09 ? 4 DG A C2 1 ATOM 76 N N2 . DG A 1 4 ? 16.268 17.421 22.584 1.00 4.66 ? 4 DG A N2 1 ATOM 77 N N3 . DG A 1 4 ? 17.985 18.956 22.589 1.00 4.72 ? 4 DG A N3 1 ATOM 78 C C4 . DG A 1 4 ? 19.337 19.067 22.658 1.00 2.75 ? 4 DG A C4 1 ATOM 79 P P . DT A 1 5 ? 15.495 23.603 20.770 1.00 6.78 ? 5 DT A P 1 ATOM 80 O OP1 . DT A 1 5 ? 15.492 24.926 20.121 1.00 8.42 ? 5 DT A OP1 1 ATOM 81 O OP2 . DT A 1 5 ? 14.336 23.288 21.670 1.00 15.93 ? 5 DT A OP2 1 ATOM 82 O "O5'" . DT A 1 5 ? 15.617 22.420 19.698 1.00 6.31 ? 5 DT A "O5'" 1 ATOM 83 C "C5'" . DT A 1 5 ? 14.652 22.379 18.651 1.00 4.86 ? 5 DT A "C5'" 1 ATOM 84 C "C4'" . DT A 1 5 ? 14.170 20.954 18.469 1.00 3.85 ? 5 DT A "C4'" 1 ATOM 85 O "O4'" . DT A 1 5 ? 15.268 20.160 18.032 1.00 2.99 ? 5 DT A "O4'" 1 ATOM 86 C "C3'" . DT A 1 5 ? 13.589 20.311 19.743 1.00 5.63 ? 5 DT A "C3'" 1 ATOM 87 O "O3'" . DT A 1 5 ? 12.427 19.573 19.398 1.00 7.91 ? 5 DT A "O3'" 1 ATOM 88 C "C2'" . DT A 1 5 ? 14.687 19.341 20.118 1.00 2.69 ? 5 DT A "C2'" 1 ATOM 89 C "C1'" . DT A 1 5 ? 15.281 18.933 18.779 1.00 7.83 ? 5 DT A "C1'" 1 ATOM 90 N N1 . DT A 1 5 ? 16.663 18.446 18.880 1.00 2.69 ? 5 DT A N1 1 ATOM 91 C C2 . DT A 1 5 ? 16.860 17.081 19.051 1.00 6.80 ? 5 DT A C2 1 ATOM 92 O O2 . DT A 1 5 ? 15.957 16.244 19.203 1.00 6.85 ? 5 DT A O2 1 ATOM 93 N N3 . DT A 1 5 ? 18.172 16.691 19.088 1.00 3.72 ? 5 DT A N3 1 ATOM 94 C C4 . DT A 1 5 ? 19.273 17.529 19.057 1.00 3.94 ? 5 DT A C4 1 ATOM 95 O O4 . DT A 1 5 ? 20.386 17.069 19.207 1.00 6.64 ? 5 DT A O4 1 ATOM 96 C C5 . DT A 1 5 ? 18.970 18.930 18.857 1.00 7.03 ? 5 DT A C5 1 ATOM 97 C C7 . DT A 1 5 ? 20.086 19.947 18.665 1.00 4.77 ? 5 DT A C7 1 ATOM 98 C C6 . DT A 1 5 ? 17.708 19.338 18.792 1.00 2.00 ? 5 DT A C6 1 ATOM 99 P P . DG A 1 6 ? 10.997 20.254 19.555 1.00 7.89 ? 6 DG A P 1 ATOM 100 O OP1 . DG A 1 6 ? 10.866 20.786 20.925 1.00 9.91 ? 6 DG A OP1 1 ATOM 101 O OP2 . DG A 1 6 ? 9.986 19.282 19.050 1.00 10.65 ? 6 DG A OP2 1 ATOM 102 O "O5'" . DG A 1 6 ? 11.006 21.503 18.585 1.00 7.82 ? 6 DG A "O5'" 1 ATOM 103 C "C5'" . DG A 1 6 ? 10.709 21.331 17.190 1.00 6.42 ? 6 DG A "C5'" 1 ATOM 104 C "C4'" . DG A 1 6 ? 10.814 22.650 16.458 1.00 6.33 ? 6 DG A "C4'" 1 ATOM 105 O "O4'" . DG A 1 6 ? 12.189 23.110 16.433 1.00 5.66 ? 6 DG A "O4'" 1 ATOM 106 C "C3'" . DG A 1 6 ? 10.303 22.485 15.025 1.00 5.86 ? 6 DG A "C3'" 1 ATOM 107 O "O3'" . DG A 1 6 ? 9.656 23.689 14.594 1.00 10.65 ? 6 DG A "O3'" 1 ATOM 108 C "C2'" . DG A 1 6 ? 11.614 22.316 14.284 1.00 11.64 ? 6 DG A "C2'" 1 ATOM 109 C "C1'" . DG A 1 6 ? 12.580 23.205 15.050 1.00 9.17 ? 6 DG A "C1'" 1 ATOM 110 N N9 . DG A 1 6 ? 14.005 22.855 14.893 1.00 5.16 ? 6 DG A N9 1 ATOM 111 C C8 . DG A 1 6 ? 15.043 23.747 14.801 1.00 7.37 ? 6 DG A C8 1 ATOM 112 N N7 . DG A 1 6 ? 16.219 23.200 14.761 1.00 7.64 ? 6 DG A N7 1 ATOM 113 C C5 . DG A 1 6 ? 15.953 21.838 14.981 1.00 5.77 ? 6 DG A C5 1 ATOM 114 C C6 . DG A 1 6 ? 16.869 20.756 15.123 1.00 5.64 ? 6 DG A C6 1 ATOM 115 O O6 . DG A 1 6 ? 18.101 20.788 15.159 1.00 8.08 ? 6 DG A O6 1 ATOM 116 N N1 . DG A 1 6 ? 16.199 19.534 15.178 1.00 4.54 ? 6 DG A N1 1 ATOM 117 C C2 . DG A 1 6 ? 14.829 19.377 15.205 1.00 4.84 ? 6 DG A C2 1 ATOM 118 N N2 . DG A 1 6 ? 14.350 18.159 15.446 1.00 7.81 ? 6 DG A N2 1 ATOM 119 N N3 . DG A 1 6 ? 13.962 20.398 15.069 1.00 6.04 ? 6 DG A N3 1 ATOM 120 C C4 . DG A 1 6 ? 14.607 21.606 15.001 1.00 5.08 ? 6 DG A C4 1 ATOM 121 O "O5'" . DC B 1 1 ? 20.082 11.133 14.664 1.00 21.46 ? 7 DC B "O5'" 1 ATOM 122 C "C5'" . DC B 1 1 ? 19.175 10.447 15.523 1.00 15.75 ? 7 DC B "C5'" 1 ATOM 123 C "C4'" . DC B 1 1 ? 17.973 11.319 15.900 1.00 7.57 ? 7 DC B "C4'" 1 ATOM 124 O "O4'" . DC B 1 1 ? 18.395 12.598 16.397 1.00 7.25 ? 7 DC B "O4'" 1 ATOM 125 C "C3'" . DC B 1 1 ? 16.963 11.548 14.789 1.00 10.51 ? 7 DC B "C3'" 1 ATOM 126 O "O3'" . DC B 1 1 ? 15.679 11.397 15.374 1.00 9.10 ? 7 DC B "O3'" 1 ATOM 127 C "C2'" . DC B 1 1 ? 17.109 13.034 14.541 1.00 8.02 ? 7 DC B "C2'" 1 ATOM 128 C "C1'" . DC B 1 1 ? 17.483 13.596 15.915 1.00 5.92 ? 7 DC B "C1'" 1 ATOM 129 N N1 . DC B 1 1 ? 18.145 14.906 15.847 1.00 6.64 ? 7 DC B N1 1 ATOM 130 C C2 . DC B 1 1 ? 17.350 16.027 15.659 1.00 3.67 ? 7 DC B C2 1 ATOM 131 O O2 . DC B 1 1 ? 16.130 15.937 15.590 1.00 8.87 ? 7 DC B O2 1 ATOM 132 N N3 . DC B 1 1 ? 17.950 17.244 15.501 1.00 6.56 ? 7 DC B N3 1 ATOM 133 C C4 . DC B 1 1 ? 19.280 17.365 15.473 1.00 9.61 ? 7 DC B C4 1 ATOM 134 N N4 . DC B 1 1 ? 19.838 18.568 15.354 1.00 6.30 ? 7 DC B N4 1 ATOM 135 C C5 . DC B 1 1 ? 20.108 16.197 15.563 1.00 6.64 ? 7 DC B C5 1 ATOM 136 C C6 . DC B 1 1 ? 19.502 15.025 15.807 1.00 5.42 ? 7 DC B C6 1 ATOM 137 P P . DA B 1 2 ? 14.864 10.019 15.346 1.00 10.10 ? 8 DA B P 1 ATOM 138 O OP1 . DA B 1 2 ? 15.011 9.312 14.067 1.00 10.42 ? 8 DA B OP1 1 ATOM 139 O OP2 . DA B 1 2 ? 13.493 10.371 15.809 1.00 12.82 ? 8 DA B OP2 1 ATOM 140 O "O5'" . DA B 1 2 ? 15.558 9.134 16.478 1.00 7.17 ? 8 DA B "O5'" 1 ATOM 141 C "C5'" . DA B 1 2 ? 15.441 9.352 17.885 1.00 7.24 ? 8 DA B "C5'" 1 ATOM 142 C "C4'" . DA B 1 2 ? 16.419 8.427 18.575 1.00 3.25 ? 8 DA B "C4'" 1 ATOM 143 O "O4'" . DA B 1 2 ? 17.766 8.750 18.234 1.00 4.29 ? 8 DA B "O4'" 1 ATOM 144 C "C3'" . DA B 1 2 ? 16.280 8.615 20.064 1.00 4.05 ? 8 DA B "C3'" 1 ATOM 145 O "O3'" . DA B 1 2 ? 15.393 7.580 20.468 1.00 5.91 ? 8 DA B "O3'" 1 ATOM 146 C "C2'" . DA B 1 2 ? 17.681 8.369 20.552 1.00 7.21 ? 8 DA B "C2'" 1 ATOM 147 C "C1'" . DA B 1 2 ? 18.587 8.690 19.386 1.00 2.00 ? 8 DA B "C1'" 1 ATOM 148 N N9 . DA B 1 2 ? 19.361 9.930 19.456 1.00 5.02 ? 8 DA B N9 1 ATOM 149 C C8 . DA B 1 2 ? 20.700 10.028 19.238 1.00 5.54 ? 8 DA B C8 1 ATOM 150 N N7 . DA B 1 2 ? 21.160 11.244 19.268 1.00 4.81 ? 8 DA B N7 1 ATOM 151 C C5 . DA B 1 2 ? 20.001 12.032 19.332 1.00 3.48 ? 8 DA B C5 1 ATOM 152 C C6 . DA B 1 2 ? 19.786 13.418 19.337 1.00 4.81 ? 8 DA B C6 1 ATOM 153 N N6 . DA B 1 2 ? 20.778 14.294 19.243 1.00 6.29 ? 8 DA B N6 1 ATOM 154 N N1 . DA B 1 2 ? 18.519 13.860 19.450 1.00 5.08 ? 8 DA B N1 1 ATOM 155 C C2 . DA B 1 2 ? 17.536 12.953 19.529 1.00 3.42 ? 8 DA B C2 1 ATOM 156 N N3 . DA B 1 2 ? 17.604 11.627 19.587 1.00 4.89 ? 8 DA B N3 1 ATOM 157 C C4 . DA B 1 2 ? 18.895 11.227 19.434 1.00 5.24 ? 8 DA B C4 1 ATOM 158 P P . DC B 1 3 ? 14.603 7.682 21.827 1.00 16.08 ? 9 DC B P 1 ATOM 159 O OP1 . DC B 1 3 ? 15.623 7.937 22.869 1.00 15.92 ? 9 DC B OP1 1 ATOM 160 O OP2 . DC B 1 3 ? 13.753 6.457 21.960 1.00 11.59 ? 9 DC B OP2 1 ATOM 161 O "O5'" . DC B 1 3 ? 13.682 8.940 21.768 1.00 7.34 ? 9 DC B "O5'" 1 ATOM 162 C "C5'" . DC B 1 3 ? 12.657 9.180 22.724 1.00 4.05 ? 9 DC B "C5'" 1 ATOM 163 C "C4'" . DC B 1 3 ? 12.478 10.677 22.848 1.00 5.07 ? 9 DC B "C4'" 1 ATOM 164 O "O4'" . DC B 1 3 ? 13.646 11.244 23.482 1.00 4.06 ? 9 DC B "O4'" 1 ATOM 165 C "C3'" . DC B 1 3 ? 12.355 11.394 21.475 1.00 3.64 ? 9 DC B "C3'" 1 ATOM 166 O "O3'" . DC B 1 3 ? 11.386 12.434 21.579 1.00 5.04 ? 9 DC B "O3'" 1 ATOM 167 C "C2'" . DC B 1 3 ? 13.728 12.015 21.306 1.00 6.14 ? 9 DC B "C2'" 1 ATOM 168 C "C1'" . DC B 1 3 ? 14.105 12.383 22.739 1.00 4.09 ? 9 DC B "C1'" 1 ATOM 169 N N1 . DC B 1 3 ? 15.576 12.524 22.902 1.00 2.96 ? 9 DC B N1 1 ATOM 170 C C2 . DC B 1 3 ? 16.116 13.796 22.811 1.00 2.58 ? 9 DC B C2 1 ATOM 171 O O2 . DC B 1 3 ? 15.428 14.802 22.738 1.00 5.00 ? 9 DC B O2 1 ATOM 172 N N3 . DC B 1 3 ? 17.463 13.934 22.811 1.00 3.80 ? 9 DC B N3 1 ATOM 173 C C4 . DC B 1 3 ? 18.260 12.886 22.919 1.00 3.10 ? 9 DC B C4 1 ATOM 174 N N4 . DC B 1 3 ? 19.572 13.101 22.820 1.00 4.56 ? 9 DC B N4 1 ATOM 175 C C5 . DC B 1 3 ? 17.733 11.569 23.053 1.00 3.61 ? 9 DC B C5 1 ATOM 176 C C6 . DC B 1 3 ? 16.389 11.445 23.056 1.00 3.98 ? 9 DC B C6 1 ATOM 177 P P . DG B 1 4 ? 9.848 12.154 21.215 1.00 4.86 ? 10 DG B P 1 ATOM 178 O OP1 . DG B 1 4 ? 9.732 11.245 20.032 1.00 5.07 ? 10 DG B OP1 1 ATOM 179 O OP2 . DG B 1 4 ? 9.158 13.454 21.193 1.00 6.23 ? 10 DG B OP2 1 ATOM 180 O "O5'" . DG B 1 4 ? 9.222 11.318 22.419 1.00 4.96 ? 10 DG B "O5'" 1 ATOM 181 C "C5'" . DG B 1 4 ? 9.125 11.903 23.724 1.00 6.18 ? 10 DG B "C5'" 1 ATOM 182 C "C4'" . DG B 1 4 ? 8.630 10.872 24.732 1.00 4.33 ? 10 DG B "C4'" 1 ATOM 183 O "O4'" . DG B 1 4 ? 9.579 9.816 24.770 1.00 4.06 ? 10 DG B "O4'" 1 ATOM 184 C "C3'" . DG B 1 4 ? 8.553 11.489 26.125 1.00 5.64 ? 10 DG B "C3'" 1 ATOM 185 O "O3'" . DG B 1 4 ? 7.189 11.845 26.366 1.00 4.98 ? 10 DG B "O3'" 1 ATOM 186 C "C2'" . DG B 1 4 ? 8.981 10.363 27.022 1.00 4.27 ? 10 DG B "C2'" 1 ATOM 187 C "C1'" . DG B 1 4 ? 9.759 9.398 26.145 1.00 5.15 ? 10 DG B "C1'" 1 ATOM 188 N N9 . DG B 1 4 ? 11.195 9.329 26.434 1.00 5.11 ? 10 DG B N9 1 ATOM 189 C C8 . DG B 1 4 ? 11.937 8.182 26.519 1.00 5.12 ? 10 DG B C8 1 ATOM 190 N N7 . DG B 1 4 ? 13.227 8.369 26.617 1.00 4.58 ? 10 DG B N7 1 ATOM 191 C C5 . DG B 1 4 ? 13.349 9.756 26.524 1.00 2.70 ? 10 DG B C5 1 ATOM 192 C C6 . DG B 1 4 ? 14.502 10.562 26.518 1.00 3.07 ? 10 DG B C6 1 ATOM 193 O O6 . DG B 1 4 ? 15.671 10.165 26.627 1.00 6.30 ? 10 DG B O6 1 ATOM 194 N N1 . DG B 1 4 ? 14.197 11.905 26.413 1.00 3.58 ? 10 DG B N1 1 ATOM 195 C C2 . DG B 1 4 ? 12.933 12.431 26.236 1.00 3.68 ? 10 DG B C2 1 ATOM 196 N N2 . DG B 1 4 ? 12.822 13.756 26.121 1.00 4.08 ? 10 DG B N2 1 ATOM 197 N N3 . DG B 1 4 ? 11.827 11.678 26.256 1.00 7.02 ? 10 DG B N3 1 ATOM 198 C C4 . DG B 1 4 ? 12.108 10.359 26.368 1.00 5.49 ? 10 DG B C4 1 ATOM 199 P P . DT B 1 5 ? 6.839 13.242 26.989 1.00 6.66 ? 11 DT B P 1 ATOM 200 O OP1 . DT B 1 5 ? 5.386 13.337 27.260 1.00 12.09 ? 11 DT B OP1 1 ATOM 201 O OP2 . DT B 1 5 ? 7.370 14.245 26.066 1.00 10.75 ? 11 DT B OP2 1 ATOM 202 O "O5'" . DT B 1 5 ? 7.711 13.332 28.300 1.00 7.63 ? 11 DT B "O5'" 1 ATOM 203 C "C5'" . DT B 1 5 ? 7.253 14.113 29.390 1.00 7.70 ? 11 DT B "C5'" 1 ATOM 204 C "C4'" . DT B 1 5 ? 8.450 14.776 30.026 1.00 3.91 ? 11 DT B "C4'" 1 ATOM 205 O "O4'" . DT B 1 5 ? 9.342 13.778 30.549 1.00 6.24 ? 11 DT B "O4'" 1 ATOM 206 C "C3'" . DT B 1 5 ? 9.253 15.597 29.016 1.00 6.98 ? 11 DT B "C3'" 1 ATOM 207 O "O3'" . DT B 1 5 ? 9.685 16.803 29.605 1.00 6.72 ? 11 DT B "O3'" 1 ATOM 208 C "C2'" . DT B 1 5 ? 10.456 14.753 28.752 1.00 6.37 ? 11 DT B "C2'" 1 ATOM 209 C "C1'" . DT B 1 5 ? 10.671 14.078 30.091 1.00 7.09 ? 11 DT B "C1'" 1 ATOM 210 N N1 . DT B 1 5 ? 11.497 12.857 30.018 1.00 3.07 ? 11 DT B N1 1 ATOM 211 C C2 . DT B 1 5 ? 12.868 12.991 29.895 1.00 3.39 ? 11 DT B C2 1 ATOM 212 O O2 . DT B 1 5 ? 13.488 14.052 29.884 1.00 8.72 ? 11 DT B O2 1 ATOM 213 N N3 . DT B 1 5 ? 13.562 11.808 29.794 1.00 5.03 ? 11 DT B N3 1 ATOM 214 C C4 . DT B 1 5 ? 13.020 10.535 29.809 1.00 6.55 ? 11 DT B C4 1 ATOM 215 O O4 . DT B 1 5 ? 13.762 9.560 29.699 1.00 7.47 ? 11 DT B O4 1 ATOM 216 C C5 . DT B 1 5 ? 11.591 10.494 29.979 1.00 3.64 ? 11 DT B C5 1 ATOM 217 C C7 . DT B 1 5 ? 10.848 9.162 30.011 1.00 8.03 ? 11 DT B C7 1 ATOM 218 C C6 . DT B 1 5 ? 10.895 11.629 30.072 1.00 2.98 ? 11 DT B C6 1 ATOM 219 P P . DG B 1 6 ? 8.879 18.147 29.422 1.00 9.84 ? 12 DG B P 1 ATOM 220 O OP1 . DG B 1 6 ? 8.495 18.308 27.983 1.00 10.22 ? 12 DG B OP1 1 ATOM 221 O OP2 . DG B 1 6 ? 9.639 19.207 30.121 1.00 13.68 ? 12 DG B OP2 1 ATOM 222 O "O5'" . DG B 1 6 ? 7.467 17.939 30.144 1.00 10.75 ? 12 DG B "O5'" 1 ATOM 223 C "C5'" . DG B 1 6 ? 7.377 18.140 31.547 1.00 11.63 ? 12 DG B "C5'" 1 ATOM 224 C "C4'" . DG B 1 6 ? 5.997 17.732 32.016 1.00 6.06 ? 12 DG B "C4'" 1 ATOM 225 O "O4'" . DG B 1 6 ? 5.777 16.310 31.880 1.00 7.10 ? 12 DG B "O4'" 1 ATOM 226 C "C3'" . DG B 1 6 ? 5.794 18.107 33.478 1.00 16.73 ? 12 DG B "C3'" 1 ATOM 227 O "O3'" . DG B 1 6 ? 4.421 18.464 33.640 1.00 22.28 ? 12 DG B "O3'" 1 ATOM 228 C "C2'" . DG B 1 6 ? 6.087 16.799 34.177 1.00 9.64 ? 12 DG B "C2'" 1 ATOM 229 C "C1'" . DG B 1 6 ? 5.542 15.761 33.201 1.00 9.17 ? 12 DG B "C1'" 1 ATOM 230 N N9 . DG B 1 6 ? 6.119 14.415 33.362 1.00 5.91 ? 12 DG B N9 1 ATOM 231 C C8 . DG B 1 6 ? 5.460 13.227 33.249 1.00 6.68 ? 12 DG B C8 1 ATOM 232 N N7 . DG B 1 6 ? 6.227 12.181 33.344 1.00 9.28 ? 12 DG B N7 1 ATOM 233 C C5 . DG B 1 6 ? 7.508 12.711 33.428 1.00 8.45 ? 12 DG B C5 1 ATOM 234 C C6 . DG B 1 6 ? 8.764 12.085 33.431 1.00 11.11 ? 12 DG B C6 1 ATOM 235 O O6 . DG B 1 6 ? 8.991 10.871 33.307 1.00 10.73 ? 12 DG B O6 1 ATOM 236 N N1 . DG B 1 6 ? 9.821 12.966 33.562 1.00 8.36 ? 12 DG B N1 1 ATOM 237 C C2 . DG B 1 6 ? 9.687 14.335 33.584 1.00 7.71 ? 12 DG B C2 1 ATOM 238 N N2 . DG B 1 6 ? 10.806 15.055 33.619 1.00 8.04 ? 12 DG B N2 1 ATOM 239 N N3 . DG B 1 6 ? 8.496 14.943 33.562 1.00 5.88 ? 12 DG B N3 1 ATOM 240 C C4 . DG B 1 6 ? 7.453 14.089 33.479 1.00 4.07 ? 12 DG B C4 1 HETATM 241 N N1 . SPM C 2 . ? 24.198 18.643 27.429 1.00 10.61 ? 13 SPM A N1 1 HETATM 242 C C2 . SPM C 2 . ? 23.969 17.332 26.950 1.00 8.15 ? 13 SPM A C2 1 HETATM 243 C C3 . SPM C 2 . ? 22.902 17.025 25.923 1.00 7.32 ? 13 SPM A C3 1 HETATM 244 C C4 . SPM C 2 . ? 22.634 15.642 25.319 1.00 7.48 ? 13 SPM A C4 1 HETATM 245 N N5 . SPM C 2 . ? 23.607 15.155 24.425 1.00 5.05 ? 13 SPM A N5 1 HETATM 246 C C6 . SPM C 2 . ? 23.032 14.074 23.762 1.00 5.78 ? 13 SPM A C6 1 HETATM 247 C C7 . SPM C 2 . ? 24.065 13.287 22.995 1.00 9.39 ? 13 SPM A C7 1 HETATM 248 C C8 . SPM C 2 . ? 23.588 12.471 21.819 1.00 4.56 ? 13 SPM A C8 1 HETATM 249 C C9 . SPM C 2 . ? 24.628 11.756 20.979 1.00 16.02 ? 13 SPM A C9 1 HETATM 250 N N10 . SPM C 2 . ? 23.974 11.078 19.960 1.00 9.96 ? 13 SPM A N10 1 HETATM 251 C C11 . SPM C 2 . ? 24.913 10.415 19.171 1.00 19.79 ? 13 SPM A C11 1 HETATM 252 C C12 . SPM C 2 . ? 24.256 9.595 18.053 1.00 14.37 ? 13 SPM A C12 1 HETATM 253 C C13 . SPM C 2 . ? 25.005 9.474 16.725 1.00 29.15 ? 13 SPM A C13 1 HETATM 254 N N14 . SPM C 2 . ? 25.266 8.242 16.104 1.00 20.92 ? 13 SPM A N14 1 HETATM 255 C CA . 13D D 3 . ? 8.776 18.676 22.567 1.00 17.58 ? 85 13D B CA 1 HETATM 256 C CB . 13D D 3 . ? 9.927 17.794 22.555 1.00 25.89 ? 85 13D B CB 1 HETATM 257 C CC . 13D D 3 . ? 9.439 16.480 22.345 1.00 34.43 ? 85 13D B CC 1 HETATM 258 N ND . 13D D 3 . ? 10.544 15.618 22.350 1.00 15.80 ? 85 13D B ND 1 HETATM 259 N NAA . 13D D 3 . ? 8.801 20.102 22.811 1.00 24.33 ? 85 13D B NAA 1 HETATM 260 O O . HOH E 4 . ? 15.589 17.963 33.697 1.00 39.31 ? 14 HOH A O 1 HETATM 261 O O . HOH E 4 . ? 12.685 21.391 22.987 1.00 12.58 ? 15 HOH A O 1 HETATM 262 O O . HOH E 4 . ? 14.120 25.520 17.710 1.00 40.35 ? 17 HOH A O 1 HETATM 263 O O . HOH E 4 . ? 13.871 18.821 23.650 1.00 20.24 ? 18 HOH A O 1 HETATM 264 O O . HOH E 4 . ? 23.960 17.156 22.557 1.00 10.86 ? 19 HOH A O 1 HETATM 265 O O . HOH E 4 . ? 13.156 16.683 24.393 1.00 48.25 ? 21 HOH A O 1 HETATM 266 O O . HOH E 4 . ? 19.248 21.268 31.039 1.00 42.64 ? 26 HOH A O 1 HETATM 267 O O . HOH E 4 . ? 15.853 24.753 29.185 1.00 42.10 ? 28 HOH A O 1 HETATM 268 O O . HOH E 4 . ? 13.090 23.858 26.143 1.00 53.39 ? 29 HOH A O 1 HETATM 269 O O . HOH E 4 . ? 23.551 20.861 19.446 1.00 27.40 ? 30 HOH A O 1 HETATM 270 O O . HOH E 4 . ? 11.613 6.793 32.770 1.00 15.84 ? 33 HOH A O 1 HETATM 271 O O . HOH E 4 . ? 22.783 20.712 31.144 1.00 12.51 ? 34 HOH A O 1 HETATM 272 O O . HOH E 4 . ? 18.619 24.138 13.567 1.00 46.67 ? 35 HOH A O 1 HETATM 273 O O . HOH E 4 . ? 23.622 13.287 18.517 1.00 27.08 ? 36 HOH A O 1 HETATM 274 O O . HOH E 4 . ? 13.777 16.093 31.872 1.00 52.80 ? 37 HOH A O 1 HETATM 275 O O . HOH E 4 . ? 11.201 17.634 16.442 1.00 20.95 ? 39 HOH A O 1 HETATM 276 O O . HOH E 4 . ? 17.180 18.743 31.366 1.00 35.84 ? 41 HOH A O 1 HETATM 277 O O . HOH E 4 . ? 9.724 15.246 16.647 1.00 34.74 ? 42 HOH A O 1 HETATM 278 O O . HOH E 4 . ? 19.990 21.880 13.550 1.00 62.94 ? 45 HOH A O 1 HETATM 279 O O . HOH E 4 . ? 18.684 24.577 18.339 1.00 53.64 ? 46 HOH A O 1 HETATM 280 O O . HOH E 4 . ? 18.757 24.132 31.659 1.00 34.08 ? 50 HOH A O 1 HETATM 281 O O . HOH E 4 . ? 14.889 20.736 30.740 1.00 48.18 ? 51 HOH A O 1 HETATM 282 O O . HOH E 4 . ? 23.370 12.469 37.576 1.00 39.98 ? 52 HOH A O 1 HETATM 283 O O . HOH E 4 . ? 12.680 19.383 26.076 1.00 42.25 ? 54 HOH A O 1 HETATM 284 O O . HOH E 4 . ? 19.790 7.614 30.952 1.00 57.31 ? 56 HOH A O 1 HETATM 285 O O . HOH E 4 . ? 21.865 14.220 35.566 1.00 55.74 ? 59 HOH A O 1 HETATM 286 O O . HOH E 4 . ? 20.240 9.460 25.900 1.00 49.40 ? 63 HOH A O 1 HETATM 287 O O . HOH E 4 . ? 8.812 19.046 15.205 1.00 51.89 ? 64 HOH A O 1 HETATM 288 O O . HOH E 4 . ? 11.395 22.572 28.093 1.00 49.82 ? 65 HOH A O 1 HETATM 289 O O . HOH E 4 . ? 13.633 16.562 28.204 1.00 42.02 ? 71 HOH A O 1 HETATM 290 O O . HOH E 4 . ? 18.060 7.725 29.157 1.00 56.34 ? 73 HOH A O 1 HETATM 291 O O . HOH E 4 . ? 19.536 18.703 36.804 1.00 49.57 ? 74 HOH A O 1 HETATM 292 O O . HOH E 4 . ? 20.279 19.840 32.948 1.00 53.02 ? 75 HOH A O 1 HETATM 293 O O . HOH E 4 . ? 18.054 20.452 34.616 1.00 60.66 ? 77 HOH A O 1 HETATM 294 O O . HOH E 4 . ? 22.879 18.349 18.818 1.00 34.63 ? 78 HOH A O 1 HETATM 295 O O . HOH E 4 . ? 15.165 23.114 32.254 1.00 49.47 ? 79 HOH A O 1 HETATM 296 O O . HOH E 4 . ? 16.350 25.732 17.868 1.00 39.81 ? 80 HOH A O 1 HETATM 297 O O . HOH E 4 . ? 6.918 19.760 18.730 1.00 56.60 ? 81 HOH A O 1 HETATM 298 O O . HOH F 4 . ? 9.527 11.812 17.323 1.00 22.20 ? 16 HOH B O 1 HETATM 299 O O . HOH F 4 . ? 21.502 12.052 26.644 1.00 20.31 ? 20 HOH B O 1 HETATM 300 O O . HOH F 4 . ? 14.173 7.066 30.499 1.00 46.99 ? 22 HOH B O 1 HETATM 301 O O . HOH F 4 . ? 23.772 11.135 29.019 1.00 42.53 ? 23 HOH B O 1 HETATM 302 O O . HOH F 4 . ? 12.861 19.767 33.461 1.00 29.18 ? 24 HOH B O 1 HETATM 303 O O . HOH F 4 . ? 7.900 14.230 19.030 1.00 31.91 ? 25 HOH B O 1 HETATM 304 O O . HOH F 4 . ? 20.865 11.092 24.165 1.00 44.61 ? 27 HOH B O 1 HETATM 305 O O . HOH F 4 . ? 10.548 17.470 26.195 1.00 16.74 ? 31 HOH B O 1 HETATM 306 O O . HOH F 4 . ? 11.069 18.103 32.654 1.00 19.80 ? 32 HOH B O 1 HETATM 307 O O . HOH F 4 . ? 12.398 11.802 18.006 1.00 40.44 ? 38 HOH B O 1 HETATM 308 O O . HOH F 4 . ? 10.185 8.466 19.400 1.00 24.12 ? 40 HOH B O 1 HETATM 309 O O . HOH F 4 . ? 19.060 9.970 12.220 1.00 31.07 ? 43 HOH B O 1 HETATM 310 O O . HOH F 4 . ? 12.026 13.305 14.688 1.00 49.79 ? 44 HOH B O 1 HETATM 311 O O . HOH F 4 . ? 11.283 16.401 19.904 1.00 34.08 ? 47 HOH B O 1 HETATM 312 O O . HOH F 4 . ? 5.708 15.808 19.897 1.00 47.95 ? 48 HOH B O 1 HETATM 313 O O . HOH F 4 . ? 12.501 19.796 29.721 1.00 42.88 ? 49 HOH B O 1 HETATM 314 O O . HOH F 4 . ? 10.450 9.850 15.310 1.00 64.27 ? 53 HOH B O 1 HETATM 315 O O . HOH F 4 . ? 20.435 9.195 22.352 1.00 36.67 ? 55 HOH B O 1 HETATM 316 O O . HOH F 4 . ? 5.919 9.345 32.778 1.00 65.28 ? 57 HOH B O 1 HETATM 317 O O . HOH F 4 . ? 7.807 10.010 30.939 1.00 53.06 ? 58 HOH B O 1 HETATM 318 O O . HOH F 4 . ? 11.943 8.401 17.430 1.00 57.29 ? 60 HOH B O 1 HETATM 319 O O . HOH F 4 . ? 17.280 7.780 12.870 1.00 36.25 ? 61 HOH B O 1 HETATM 320 O O . HOH F 4 . ? 21.920 12.720 16.500 1.00 54.47 ? 62 HOH B O 1 HETATM 321 O O . HOH F 4 . ? 13.038 14.391 16.154 1.00 49.62 ? 66 HOH B O 1 HETATM 322 O O . HOH F 4 . ? 13.627 7.133 13.195 1.00 40.70 ? 67 HOH B O 1 HETATM 323 O O . HOH F 4 . ? 16.850 8.420 24.990 1.00 52.11 ? 68 HOH B O 1 HETATM 324 O O . HOH F 4 . ? 13.287 5.404 28.096 1.00 43.03 ? 69 HOH B O 1 HETATM 325 O O . HOH F 4 . ? 3.900 18.353 36.491 1.00 56.99 ? 70 HOH B O 1 HETATM 326 O O . HOH F 4 . ? 11.510 21.930 31.149 1.00 63.53 ? 72 HOH B O 1 HETATM 327 O O . HOH F 4 . ? 13.906 5.008 19.513 1.00 53.80 ? 76 HOH B O 1 HETATM 328 O O . HOH F 4 . ? 8.313 16.457 24.930 1.00 47.35 ? 82 HOH B O 1 HETATM 329 O O . HOH F 4 . ? 9.911 14.927 25.195 1.00 16.63 ? 83 HOH B O 1 HETATM 330 O O . HOH F 4 . ? 12.779 15.907 21.708 1.00 51.13 ? 84 HOH B O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC CYT A . n A 1 2 DA 2 2 2 DA ADE A . n A 1 3 DC 3 3 3 DC CYT A . n A 1 4 DG 4 4 4 DG GUA A . n A 1 5 DT 5 5 5 DT THY A . n A 1 6 DG 6 6 6 DG GUA A . n B 1 1 DC 1 7 7 DC CYT B . n B 1 2 DA 2 8 8 DA ADE B . n B 1 3 DC 3 9 9 DC CYT B . n B 1 4 DG 4 10 10 DG GUA B . n B 1 5 DT 5 11 11 DT THY B . n B 1 6 DG 6 12 12 DG GUA B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SPM 1 13 13 SPM SP A . D 3 13D 1 85 85 13D Z5 B . E 4 HOH 1 14 14 HOH WAT A . E 4 HOH 2 15 15 HOH WAT A . E 4 HOH 3 17 17 HOH WAT A . E 4 HOH 4 18 18 HOH WAT A . E 4 HOH 5 19 19 HOH WAT A . E 4 HOH 6 21 21 HOH WAT A . E 4 HOH 7 26 26 HOH WAT A . E 4 HOH 8 28 28 HOH WAT A . E 4 HOH 9 29 29 HOH WAT A . E 4 HOH 10 30 30 HOH WAT A . E 4 HOH 11 33 33 HOH WAT A . E 4 HOH 12 34 34 HOH WAT A . E 4 HOH 13 35 35 HOH WAT A . E 4 HOH 14 36 36 HOH WAT A . E 4 HOH 15 37 37 HOH WAT A . E 4 HOH 16 39 39 HOH WAT A . E 4 HOH 17 41 41 HOH WAT A . E 4 HOH 18 42 42 HOH WAT A . E 4 HOH 19 45 45 HOH WAT A . E 4 HOH 20 46 46 HOH WAT A . E 4 HOH 21 50 50 HOH WAT A . E 4 HOH 22 51 51 HOH WAT A . E 4 HOH 23 52 52 HOH WAT A . E 4 HOH 24 54 54 HOH WAT A . E 4 HOH 25 56 56 HOH WAT A . E 4 HOH 26 59 59 HOH WAT A . E 4 HOH 27 63 63 HOH WAT A . E 4 HOH 28 64 64 HOH WAT A . E 4 HOH 29 65 65 HOH WAT A . E 4 HOH 30 71 71 HOH WAT A . E 4 HOH 31 73 73 HOH WAT A . E 4 HOH 32 74 74 HOH WAT A . E 4 HOH 33 75 75 HOH WAT A . E 4 HOH 34 77 77 HOH WAT A . E 4 HOH 35 78 78 HOH WAT A . E 4 HOH 36 79 79 HOH WAT A . E 4 HOH 37 80 80 HOH WAT A . E 4 HOH 38 81 81 HOH WAT A . F 4 HOH 1 16 16 HOH WAT B . F 4 HOH 2 20 20 HOH WAT B . F 4 HOH 3 22 22 HOH WAT B . F 4 HOH 4 23 23 HOH WAT B . F 4 HOH 5 24 24 HOH WAT B . F 4 HOH 6 25 25 HOH WAT B . F 4 HOH 7 27 27 HOH WAT B . F 4 HOH 8 31 31 HOH WAT B . F 4 HOH 9 32 32 HOH WAT B . F 4 HOH 10 38 38 HOH WAT B . F 4 HOH 11 40 40 HOH WAT B . F 4 HOH 12 43 43 HOH WAT B . F 4 HOH 13 44 44 HOH WAT B . F 4 HOH 14 47 47 HOH WAT B . F 4 HOH 15 48 48 HOH WAT B . F 4 HOH 16 49 49 HOH WAT B . F 4 HOH 17 53 53 HOH WAT B . F 4 HOH 18 55 55 HOH WAT B . F 4 HOH 19 57 57 HOH WAT B . F 4 HOH 20 58 58 HOH WAT B . F 4 HOH 21 60 60 HOH WAT B . F 4 HOH 22 61 61 HOH WAT B . F 4 HOH 23 62 62 HOH WAT B . F 4 HOH 24 66 66 HOH WAT B . F 4 HOH 25 67 67 HOH WAT B . F 4 HOH 26 68 68 HOH WAT B . F 4 HOH 27 69 69 HOH WAT B . F 4 HOH 28 70 70 HOH WAT B . F 4 HOH 29 72 72 HOH WAT B . F 4 HOH 30 76 76 HOH WAT B . F 4 HOH 31 82 82 HOH WAT B . F 4 HOH 32 83 83 HOH WAT B . F 4 HOH 33 84 84 HOH WAT B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-01-31 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-04-04 5 'Structure model' 1 4 2018-04-18 6 'Structure model' 1 5 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 5 'Structure model' 'Data collection' 5 6 'Structure model' 'Data collection' 6 6 'Structure model' 'Database references' 7 6 'Structure model' 'Derived calculations' 8 6 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_source 2 5 'Structure model' diffrn_detector 3 6 'Structure model' chem_comp_atom 4 6 'Structure model' chem_comp_bond 5 6 'Structure model' database_2 6 6 'Structure model' pdbx_initial_refinement_model 7 6 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_source.type' 2 5 'Structure model' '_diffrn_detector.detector' 3 6 'Structure model' '_database_2.pdbx_DOI' 4 6 'Structure model' '_database_2.pdbx_database_accession' 5 6 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 6 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 6 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CAD4 'data collection' . ? 1 CAD4 'data reduction' 'associated program' ? 2 X-PLOR 'model building' . ? 3 X-PLOR refinement . ? 4 CAD4 'data scaling' . ? 5 X-PLOR phasing . ? 6 # _pdbx_database_remark.id 600 _pdbx_database_remark.text ;HETEROGEN Ligand Z5 in the manuscript is labeled as 13D in the coordinate file. ; # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 44 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 66 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.09 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DC 1 ? ? "C1'" A DC 1 ? ? N1 A DC 1 ? ? 112.66 108.30 4.36 0.30 N 2 1 "O4'" A DA 2 ? ? "C1'" A DA 2 ? ? N9 A DA 2 ? ? 110.90 108.30 2.60 0.30 N 3 1 "O4'" A DG 4 ? ? "C1'" A DG 4 ? ? N9 A DG 4 ? ? 111.19 108.30 2.89 0.30 N 4 1 C6 A DT 5 ? ? C5 A DT 5 ? ? C7 A DT 5 ? ? 119.04 122.90 -3.86 0.60 N 5 1 "O4'" A DG 6 ? ? "C1'" A DG 6 ? ? N9 A DG 6 ? ? 110.40 108.30 2.10 0.30 N 6 1 "O4'" B DC 7 ? ? "C1'" B DC 7 ? ? N1 B DC 7 ? ? 110.44 108.30 2.14 0.30 N 7 1 N1 B DC 9 ? ? C2 B DC 9 ? ? O2 B DC 9 ? ? 122.75 118.90 3.85 0.60 N 8 1 "O4'" B DT 11 ? ? "C1'" B DT 11 ? ? N1 B DT 11 ? ? 111.13 108.30 2.83 0.30 N 9 1 C6 B DT 11 ? ? C5 B DT 11 ? ? C7 B DT 11 ? ? 119.15 122.90 -3.75 0.60 N 10 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 112.46 108.30 4.16 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 2 ? ? 0.060 'SIDE CHAIN' 2 1 DG A 6 ? ? 0.070 'SIDE CHAIN' 3 1 DC B 9 ? ? 0.062 'SIDE CHAIN' 4 1 DG B 12 ? ? 0.064 'SIDE CHAIN' # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 13D CA C N N 1 13D CB C N N 2 13D CC C N N 3 13D ND N N N 4 13D NAA N N N 5 13D HAC1 H N N 6 13D HAC2 H N N 7 13D HBC1 H N N 8 13D HBC2 H N N 9 13D HCC1 H N N 10 13D HCC2 H N N 11 13D HDN1 H N N 12 13D HDN2 H N N 13 13D HAA1 H N N 14 13D HAA2 H N N 15 DA OP3 O N N 16 DA P P N N 17 DA OP1 O N N 18 DA OP2 O N N 19 DA "O5'" O N N 20 DA "C5'" C N N 21 DA "C4'" C N R 22 DA "O4'" O N N 23 DA "C3'" C N S 24 DA "O3'" O N N 25 DA "C2'" C N N 26 DA "C1'" C N R 27 DA N9 N Y N 28 DA C8 C Y N 29 DA N7 N Y N 30 DA C5 C Y N 31 DA C6 C Y N 32 DA N6 N N N 33 DA N1 N Y N 34 DA C2 C Y N 35 DA N3 N Y N 36 DA C4 C Y N 37 DA HOP3 H N N 38 DA HOP2 H N N 39 DA "H5'" H N N 40 DA "H5''" H N N 41 DA "H4'" H N N 42 DA "H3'" H N N 43 DA "HO3'" H N N 44 DA "H2'" H N N 45 DA "H2''" H N N 46 DA "H1'" H N N 47 DA H8 H N N 48 DA H61 H N N 49 DA H62 H N N 50 DA H2 H N N 51 DC OP3 O N N 52 DC P P N N 53 DC OP1 O N N 54 DC OP2 O N N 55 DC "O5'" O N N 56 DC "C5'" C N N 57 DC "C4'" C N R 58 DC "O4'" O N N 59 DC "C3'" C N S 60 DC "O3'" O N N 61 DC "C2'" C N N 62 DC "C1'" C N R 63 DC N1 N N N 64 DC C2 C N N 65 DC O2 O N N 66 DC N3 N N N 67 DC C4 C N N 68 DC N4 N N N 69 DC C5 C N N 70 DC C6 C N N 71 DC HOP3 H N N 72 DC HOP2 H N N 73 DC "H5'" H N N 74 DC "H5''" H N N 75 DC "H4'" H N N 76 DC "H3'" H N N 77 DC "HO3'" H N N 78 DC "H2'" H N N 79 DC "H2''" H N N 80 DC "H1'" H N N 81 DC H41 H N N 82 DC H42 H N N 83 DC H5 H N N 84 DC H6 H N N 85 DG OP3 O N N 86 DG P P N N 87 DG OP1 O N N 88 DG OP2 O N N 89 DG "O5'" O N N 90 DG "C5'" C N N 91 DG "C4'" C N R 92 DG "O4'" O N N 93 DG "C3'" C N S 94 DG "O3'" O N N 95 DG "C2'" C N N 96 DG "C1'" C N R 97 DG N9 N Y N 98 DG C8 C Y N 99 DG N7 N Y N 100 DG C5 C Y N 101 DG C6 C N N 102 DG O6 O N N 103 DG N1 N N N 104 DG C2 C N N 105 DG N2 N N N 106 DG N3 N N N 107 DG C4 C Y N 108 DG HOP3 H N N 109 DG HOP2 H N N 110 DG "H5'" H N N 111 DG "H5''" H N N 112 DG "H4'" H N N 113 DG "H3'" H N N 114 DG "HO3'" H N N 115 DG "H2'" H N N 116 DG "H2''" H N N 117 DG "H1'" H N N 118 DG H8 H N N 119 DG H1 H N N 120 DG H21 H N N 121 DG H22 H N N 122 DT OP3 O N N 123 DT P P N N 124 DT OP1 O N N 125 DT OP2 O N N 126 DT "O5'" O N N 127 DT "C5'" C N N 128 DT "C4'" C N R 129 DT "O4'" O N N 130 DT "C3'" C N S 131 DT "O3'" O N N 132 DT "C2'" C N N 133 DT "C1'" C N R 134 DT N1 N N N 135 DT C2 C N N 136 DT O2 O N N 137 DT N3 N N N 138 DT C4 C N N 139 DT O4 O N N 140 DT C5 C N N 141 DT C7 C N N 142 DT C6 C N N 143 DT HOP3 H N N 144 DT HOP2 H N N 145 DT "H5'" H N N 146 DT "H5''" H N N 147 DT "H4'" H N N 148 DT "H3'" H N N 149 DT "HO3'" H N N 150 DT "H2'" H N N 151 DT "H2''" H N N 152 DT "H1'" H N N 153 DT H3 H N N 154 DT H71 H N N 155 DT H72 H N N 156 DT H73 H N N 157 DT H6 H N N 158 HOH O O N N 159 HOH H1 H N N 160 HOH H2 H N N 161 SPM N1 N N N 162 SPM C2 C N N 163 SPM C3 C N N 164 SPM C4 C N N 165 SPM N5 N N N 166 SPM C6 C N N 167 SPM C7 C N N 168 SPM C8 C N N 169 SPM C9 C N N 170 SPM N10 N N N 171 SPM C11 C N N 172 SPM C12 C N N 173 SPM C13 C N N 174 SPM N14 N N N 175 SPM HN11 H N N 176 SPM HN12 H N N 177 SPM H21 H N N 178 SPM H22 H N N 179 SPM H31 H N N 180 SPM H32 H N N 181 SPM H41 H N N 182 SPM H42 H N N 183 SPM HN5 H N N 184 SPM H61 H N N 185 SPM H62 H N N 186 SPM H71 H N N 187 SPM H72 H N N 188 SPM H81 H N N 189 SPM H82 H N N 190 SPM H91 H N N 191 SPM H92 H N N 192 SPM HN0 H N N 193 SPM H111 H N N 194 SPM H112 H N N 195 SPM H121 H N N 196 SPM H122 H N N 197 SPM H131 H N N 198 SPM H132 H N N 199 SPM HN41 H N N 200 SPM HN42 H N N 201 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 13D CA CB sing N N 1 13D CA NAA sing N N 2 13D CA HAC1 sing N N 3 13D CA HAC2 sing N N 4 13D CB CC sing N N 5 13D CB HBC1 sing N N 6 13D CB HBC2 sing N N 7 13D CC ND sing N N 8 13D CC HCC1 sing N N 9 13D CC HCC2 sing N N 10 13D ND HDN1 sing N N 11 13D ND HDN2 sing N N 12 13D NAA HAA1 sing N N 13 13D NAA HAA2 sing N N 14 DA OP3 P sing N N 15 DA OP3 HOP3 sing N N 16 DA P OP1 doub N N 17 DA P OP2 sing N N 18 DA P "O5'" sing N N 19 DA OP2 HOP2 sing N N 20 DA "O5'" "C5'" sing N N 21 DA "C5'" "C4'" sing N N 22 DA "C5'" "H5'" sing N N 23 DA "C5'" "H5''" sing N N 24 DA "C4'" "O4'" sing N N 25 DA "C4'" "C3'" sing N N 26 DA "C4'" "H4'" sing N N 27 DA "O4'" "C1'" sing N N 28 DA "C3'" "O3'" sing N N 29 DA "C3'" "C2'" sing N N 30 DA "C3'" "H3'" sing N N 31 DA "O3'" "HO3'" sing N N 32 DA "C2'" "C1'" sing N N 33 DA "C2'" "H2'" sing N N 34 DA "C2'" "H2''" sing N N 35 DA "C1'" N9 sing N N 36 DA "C1'" "H1'" sing N N 37 DA N9 C8 sing Y N 38 DA N9 C4 sing Y N 39 DA C8 N7 doub Y N 40 DA C8 H8 sing N N 41 DA N7 C5 sing Y N 42 DA C5 C6 sing Y N 43 DA C5 C4 doub Y N 44 DA C6 N6 sing N N 45 DA C6 N1 doub Y N 46 DA N6 H61 sing N N 47 DA N6 H62 sing N N 48 DA N1 C2 sing Y N 49 DA C2 N3 doub Y N 50 DA C2 H2 sing N N 51 DA N3 C4 sing Y N 52 DC OP3 P sing N N 53 DC OP3 HOP3 sing N N 54 DC P OP1 doub N N 55 DC P OP2 sing N N 56 DC P "O5'" sing N N 57 DC OP2 HOP2 sing N N 58 DC "O5'" "C5'" sing N N 59 DC "C5'" "C4'" sing N N 60 DC "C5'" "H5'" sing N N 61 DC "C5'" "H5''" sing N N 62 DC "C4'" "O4'" sing N N 63 DC "C4'" "C3'" sing N N 64 DC "C4'" "H4'" sing N N 65 DC "O4'" "C1'" sing N N 66 DC "C3'" "O3'" sing N N 67 DC "C3'" "C2'" sing N N 68 DC "C3'" "H3'" sing N N 69 DC "O3'" "HO3'" sing N N 70 DC "C2'" "C1'" sing N N 71 DC "C2'" "H2'" sing N N 72 DC "C2'" "H2''" sing N N 73 DC "C1'" N1 sing N N 74 DC "C1'" "H1'" sing N N 75 DC N1 C2 sing N N 76 DC N1 C6 sing N N 77 DC C2 O2 doub N N 78 DC C2 N3 sing N N 79 DC N3 C4 doub N N 80 DC C4 N4 sing N N 81 DC C4 C5 sing N N 82 DC N4 H41 sing N N 83 DC N4 H42 sing N N 84 DC C5 C6 doub N N 85 DC C5 H5 sing N N 86 DC C6 H6 sing N N 87 DG OP3 P sing N N 88 DG OP3 HOP3 sing N N 89 DG P OP1 doub N N 90 DG P OP2 sing N N 91 DG P "O5'" sing N N 92 DG OP2 HOP2 sing N N 93 DG "O5'" "C5'" sing N N 94 DG "C5'" "C4'" sing N N 95 DG "C5'" "H5'" sing N N 96 DG "C5'" "H5''" sing N N 97 DG "C4'" "O4'" sing N N 98 DG "C4'" "C3'" sing N N 99 DG "C4'" "H4'" sing N N 100 DG "O4'" "C1'" sing N N 101 DG "C3'" "O3'" sing N N 102 DG "C3'" "C2'" sing N N 103 DG "C3'" "H3'" sing N N 104 DG "O3'" "HO3'" sing N N 105 DG "C2'" "C1'" sing N N 106 DG "C2'" "H2'" sing N N 107 DG "C2'" "H2''" sing N N 108 DG "C1'" N9 sing N N 109 DG "C1'" "H1'" sing N N 110 DG N9 C8 sing Y N 111 DG N9 C4 sing Y N 112 DG C8 N7 doub Y N 113 DG C8 H8 sing N N 114 DG N7 C5 sing Y N 115 DG C5 C6 sing N N 116 DG C5 C4 doub Y N 117 DG C6 O6 doub N N 118 DG C6 N1 sing N N 119 DG N1 C2 sing N N 120 DG N1 H1 sing N N 121 DG C2 N2 sing N N 122 DG C2 N3 doub N N 123 DG N2 H21 sing N N 124 DG N2 H22 sing N N 125 DG N3 C4 sing N N 126 DT OP3 P sing N N 127 DT OP3 HOP3 sing N N 128 DT P OP1 doub N N 129 DT P OP2 sing N N 130 DT P "O5'" sing N N 131 DT OP2 HOP2 sing N N 132 DT "O5'" "C5'" sing N N 133 DT "C5'" "C4'" sing N N 134 DT "C5'" "H5'" sing N N 135 DT "C5'" "H5''" sing N N 136 DT "C4'" "O4'" sing N N 137 DT "C4'" "C3'" sing N N 138 DT "C4'" "H4'" sing N N 139 DT "O4'" "C1'" sing N N 140 DT "C3'" "O3'" sing N N 141 DT "C3'" "C2'" sing N N 142 DT "C3'" "H3'" sing N N 143 DT "O3'" "HO3'" sing N N 144 DT "C2'" "C1'" sing N N 145 DT "C2'" "H2'" sing N N 146 DT "C2'" "H2''" sing N N 147 DT "C1'" N1 sing N N 148 DT "C1'" "H1'" sing N N 149 DT N1 C2 sing N N 150 DT N1 C6 sing N N 151 DT C2 O2 doub N N 152 DT C2 N3 sing N N 153 DT N3 C4 sing N N 154 DT N3 H3 sing N N 155 DT C4 O4 doub N N 156 DT C4 C5 sing N N 157 DT C5 C7 sing N N 158 DT C5 C6 doub N N 159 DT C7 H71 sing N N 160 DT C7 H72 sing N N 161 DT C7 H73 sing N N 162 DT C6 H6 sing N N 163 HOH O H1 sing N N 164 HOH O H2 sing N N 165 SPM N1 C2 sing N N 166 SPM N1 HN11 sing N N 167 SPM N1 HN12 sing N N 168 SPM C2 C3 sing N N 169 SPM C2 H21 sing N N 170 SPM C2 H22 sing N N 171 SPM C3 C4 sing N N 172 SPM C3 H31 sing N N 173 SPM C3 H32 sing N N 174 SPM C4 N5 sing N N 175 SPM C4 H41 sing N N 176 SPM C4 H42 sing N N 177 SPM N5 C6 sing N N 178 SPM N5 HN5 sing N N 179 SPM C6 C7 sing N N 180 SPM C6 H61 sing N N 181 SPM C6 H62 sing N N 182 SPM C7 C8 sing N N 183 SPM C7 H71 sing N N 184 SPM C7 H72 sing N N 185 SPM C8 C9 sing N N 186 SPM C8 H81 sing N N 187 SPM C8 H82 sing N N 188 SPM C9 N10 sing N N 189 SPM C9 H91 sing N N 190 SPM C9 H92 sing N N 191 SPM N10 C11 sing N N 192 SPM N10 HN0 sing N N 193 SPM C11 C12 sing N N 194 SPM C11 H111 sing N N 195 SPM C11 H112 sing N N 196 SPM C12 C13 sing N N 197 SPM C12 H121 sing N N 198 SPM C12 H122 sing N N 199 SPM C13 N14 sing N N 200 SPM C13 H131 sing N N 201 SPM C13 H132 sing N N 202 SPM N14 HN41 sing N N 203 SPM N14 HN42 sing N N 204 # _ndb_struct_conf_na.entry_id 2F8W _ndb_struct_conf_na.feature 'z-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 6 1_555 -0.242 -0.173 0.086 6.255 -1.394 2.616 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DA 2 1_555 B DT 5 1_555 0.049 -0.195 -0.182 -10.166 -4.376 1.376 2 A_DA2:DT11_B A 2 ? B 11 ? 20 1 1 A DC 3 1_555 B DG 4 1_555 -0.271 -0.176 0.134 1.168 4.789 2.043 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 0.251 -0.223 0.103 -6.702 3.214 2.533 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DT 5 1_555 B DA 2 1_555 -0.123 -0.145 0.012 7.620 -4.336 5.274 5 A_DT5:DA8_B A 5 ? B 8 ? 20 1 1 A DG 6 1_555 B DC 1 1_555 0.214 -0.163 -0.012 -1.929 -2.419 2.458 6 A_DG6:DC7_B A 6 ? B 7 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 6 1_555 A DA 2 1_555 B DT 5 1_555 0.208 5.718 3.856 1.003 -3.529 -11.416 -20.768 2.877 5.332 17.168 4.881 -11.989 1 AA_DC1DA2:DT11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DA 2 1_555 B DT 5 1_555 A DC 3 1_555 B DG 4 1_555 0.682 -0.436 3.208 -1.611 -3.161 -50.829 0.722 0.683 3.196 3.678 -1.874 -50.944 2 AA_DA2DC3:DG10DT11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.372 5.429 3.698 -0.963 1.109 -9.884 -33.314 -3.997 3.021 -6.392 -5.547 -9.992 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 3 1_555 A DT 5 1_555 B DA 2 1_555 -0.342 -0.993 3.257 2.018 3.278 -50.298 0.930 -0.257 3.322 -3.851 2.370 -50.436 4 AA_DG4DT5:DA8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DT 5 1_555 B DA 2 1_555 A DG 6 1_555 B DC 1 1_555 -0.311 5.490 3.766 3.619 -0.249 -7.482 -37.061 9.620 3.689 1.776 25.830 -8.314 5 AA_DT5DG6:DC7DA8_BB A 5 ? B 8 ? A 6 ? B 7 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 SPERMINE SPM 3 1,3-DIAMINOPROPANE 13D 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1D48 _pdbx_initial_refinement_model.details 'PDB entry 1D48' #