0.023174
0.013379
0.000000
0.000000
0.026759
0.000000
0.000000
0.000000
0.006431
0.00000
0.00000
0.00000
Turnbull, A.P.
Elkins, J.M.
Gileadi, C.
Burgess, N.
Salah, E.
Papagrigoriou, E.
Debreczeni, J.
von Delft, F.
Weigelt, J.
Edwards, A.
Arrowsmith, C.
Sundstrom, M.
Doyle, D.
Structural Genomics Consortium (SGC)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.00
90.00
120.00
43.152
43.152
155.499
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C10 H15 N5 O11 P2
443.201
n
GUANOSINE-5'-DIPHOSPHATE
RNA linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
P
N
89
N
O
N
90
N
O
N
91
N
O
N
92
N
O
N
93
N
P
N
94
N
O
N
95
N
O
N
96
N
O
N
97
N
C
N
98
R
C
N
99
N
O
N
100
S
C
N
101
N
O
N
102
R
C
N
103
N
O
N
104
R
C
Y
105
N
N
Y
106
N
C
Y
107
N
N
Y
108
N
C
N
109
N
C
N
110
N
O
N
111
N
N
N
112
N
C
N
113
N
N
N
114
N
N
Y
115
N
C
N
116
N
H
N
117
N
H
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
H
N
129
N
H
N
130
N
H
N
131
N
N
N
132
S
C
N
133
N
C
N
134
N
O
N
135
N
C
N
136
N
C
N
137
N
C
N
138
N
O
N
139
N
N
N
140
N
O
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
H
N
145
N
H
N
146
N
H
N
147
N
H
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
N
N
152
S
C
N
153
N
C
N
154
N
O
N
155
N
C
N
156
N
C
N
157
N
C
N
158
N
O
N
159
N
O
N
160
N
O
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
H
N
170
N
N
N
171
N
C
N
172
N
C
N
173
N
O
N
174
N
O
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
N
N
181
S
C
N
182
N
C
N
183
N
O
N
184
N
C
Y
185
N
C
Y
186
N
N
Y
187
N
C
Y
188
N
C
Y
189
N
N
N
190
N
O
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
O
N
202
N
H
N
203
N
H
N
204
N
N
N
205
S
C
N
206
N
C
N
207
N
O
N
208
S
C
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
N
N
227
S
C
N
228
N
C
N
229
N
O
N
230
N
C
N
231
N
C
N
232
N
C
N
233
N
C
N
234
N
O
N
235
N
H
N
236
N
H
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
N
253
N
C
N
254
N
C
N
255
N
C
N
256
N
N
N
257
N
O
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
S
N
280
N
C
N
281
N
O
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
MG
N
294
N
N
N
295
S
C
N
296
N
C
N
297
N
O
N
298
N
C
Y
299
N
C
Y
300
N
C
Y
301
N
C
Y
302
N
C
Y
303
N
C
Y
304
N
C
N
305
N
O
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
N
N
318
S
C
N
319
N
C
N
320
N
O
N
321
N
C
N
322
N
C
N
323
N
C
N
324
N
O
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
N
339
N
O
N
340
N
O
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
R
C
N
353
N
O
N
354
N
C
N
355
N
O
N
356
N
H
N
357
N
H
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
N
N
366
S
C
N
367
N
C
N
368
N
O
N
369
N
C
Y
370
N
C
Y
371
N
C
Y
372
N
C
Y
373
N
C
Y
374
N
C
Y
375
N
C
N
376
N
O
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
N
N
390
S
C
N
391
N
C
N
392
N
O
N
393
N
C
N
394
N
C
N
395
N
C
N
396
N
O
N
397
N
H
N
398
N
H
N
399
N
H
N
400
N
H
N
401
N
H
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
doub
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
doub
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
Y
112
N
sing
Y
113
N
sing
Y
114
N
doub
N
115
N
sing
Y
116
N
sing
N
117
N
sing
Y
118
N
doub
N
119
N
doub
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
doub
N
125
N
sing
N
126
N
sing
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
doub
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
doub
N
143
N
sing
N
144
N
sing
N
145
N
sing
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
doub
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
doub
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
doub
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
doub
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
Y
185
N
sing
Y
186
N
doub
Y
187
N
doub
N
188
N
sing
Y
189
N
sing
N
190
N
sing
Y
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
doub
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
doub
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
doub
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
doub
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
Y
293
N
doub
Y
294
N
sing
Y
295
N
sing
N
296
N
sing
Y
297
N
doub
N
298
N
sing
Y
299
N
doub
N
300
N
sing
Y
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
doub
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
doub
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
doub
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
doub
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
Y
362
N
doub
Y
363
N
sing
Y
364
N
sing
N
365
N
sing
Y
366
N
doub
N
367
N
sing
Y
368
N
doub
N
369
N
sing
Y
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
doub
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
sing
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
To be Published
0353
The crystal structure of human Ras-related protein, RRAS, in the GDP-bound state
10.2210/pdb2fn4/pdb
pdb_00002fn4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2005-12-09
MARMOSAIC 225 mm CCD
Si (111)
SINGLE WAVELENGTH
M
x-ray
1
1.00008
1.0
X10SA
SLS
1.00008
SYNCHROTRON
SLS BEAMLINE X10SA
20150.609
Ras-related protein R-Ras
residues 23-201
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
443.201
GUANOSINE-5'-DIPHOSPHATE
1
syn
non-polymer
18.015
water
94
nat
water
p23
no
no
SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA
GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD
EAFEQLVRAVRKYQEQELPPS
SMDPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRA
GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVD
EAFEQLVRAVRKYQEQELPPS
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
RRAS
9606
Homo sapiens
562
Escherichia coli
BL-21(DE3)R3
PLASMID
pNIC28-Bsa4
1
2.07
40.67
VAPOR DIFFUSION, SITTING DROP
7.5
1.6M Na/KPO4, 0.1M HEPES, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
293
Structural Genomics Consortium
SGC
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-01-31
1
1
2008-05-01
1
2
2011-07-13
1
3
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Y
RCSB
Y
RCSB
2006-01-10
REL
REL
MG
MAGNESIUM ION
GDP
GUANOSINE-5'-DIPHOSPHATE
HOH
water
2ERY
2ERY.pdb
PDB
experimental model
MG
1
2
MG
MG
2
A
GDP
1
3
GDP
GDP
1
A
HOH
5
4
HOH
HOH
202
A
HOH
7
4
HOH
HOH
203
A
HOH
10
4
HOH
HOH
204
A
HOH
11
4
HOH
HOH
205
A
HOH
13
4
HOH
HOH
206
A
HOH
14
4
HOH
HOH
207
A
HOH
15
4
HOH
HOH
208
A
HOH
18
4
HOH
HOH
209
A
HOH
19
4
HOH
HOH
210
A
HOH
23
4
HOH
HOH
211
A
HOH
26
4
HOH
HOH
212
A
HOH
30
4
HOH
HOH
213
A
HOH
31
4
HOH
HOH
214
A
HOH
37
4
HOH
HOH
215
A
HOH
38
4
HOH
HOH
216
A
HOH
39
4
HOH
HOH
217
A
HOH
40
4
HOH
HOH
218
A
HOH
44
4
HOH
HOH
219
A
HOH
45
4
HOH
HOH
220
A
HOH
47
4
HOH
HOH
221
A
HOH
49
4
HOH
HOH
222
A
HOH
50
4
HOH
HOH
223
A
HOH
54
4
HOH
HOH
224
A
HOH
57
4
HOH
HOH
225
A
HOH
59
4
HOH
HOH
226
A
HOH
66
4
HOH
HOH
227
A
HOH
67
4
HOH
HOH
228
A
HOH
68
4
HOH
HOH
229
A
HOH
69
4
HOH
HOH
230
A
HOH
70
4
HOH
HOH
231
A
HOH
71
4
HOH
HOH
232
A
HOH
72
4
HOH
HOH
233
A
HOH
79
4
HOH
HOH
234
A
HOH
83
4
HOH
HOH
235
A
HOH
84
4
HOH
HOH
236
A
HOH
85
4
HOH
HOH
237
A
HOH
86
4
HOH
HOH
238
A
HOH
89
4
HOH
HOH
239
A
HOH
90
4
HOH
HOH
240
A
HOH
93
4
HOH
HOH
241
A
HOH
104
4
HOH
HOH
242
A
HOH
105
4
HOH
HOH
243
A
HOH
106
4
HOH
HOH
244
A
HOH
108
4
HOH
HOH
245
A
HOH
111
4
HOH
HOH
246
A
HOH
112
4
HOH
HOH
247
A
HOH
115
4
HOH
HOH
248
A
HOH
116
4
HOH
HOH
249
A
HOH
119
4
HOH
HOH
250
A
HOH
120
4
HOH
HOH
251
A
HOH
121
4
HOH
HOH
252
A
HOH
122
4
HOH
HOH
253
A
HOH
123
4
HOH
HOH
254
A
HOH
124
4
HOH
HOH
255
A
HOH
125
4
HOH
HOH
256
A
HOH
126
4
HOH
HOH
257
A
HOH
127
4
HOH
HOH
258
A
HOH
128
4
HOH
HOH
259
A
HOH
129
4
HOH
HOH
260
A
HOH
132
4
HOH
HOH
261
A
HOH
134
4
HOH
HOH
262
A
HOH
135
4
HOH
HOH
263
A
HOH
137
4
HOH
HOH
264
A
HOH
138
4
HOH
HOH
265
A
HOH
139
4
HOH
HOH
266
A
HOH
202
4
HOH
HOH
267
A
HOH
204
4
HOH
HOH
268
A
HOH
205
4
HOH
HOH
269
A
HOH
211
4
HOH
HOH
270
A
HOH
212
4
HOH
HOH
271
A
HOH
213
4
HOH
HOH
272
A
HOH
214
4
HOH
HOH
273
A
HOH
215
4
HOH
HOH
274
A
HOH
218
4
HOH
HOH
275
A
HOH
220
4
HOH
HOH
276
A
HOH
222
4
HOH
HOH
277
A
HOH
224
4
HOH
HOH
278
A
HOH
225
4
HOH
HOH
279
A
HOH
226
4
HOH
HOH
280
A
HOH
228
4
HOH
HOH
281
A
HOH
229
4
HOH
HOH
282
A
HOH
230
4
HOH
HOH
283
A
HOH
231
4
HOH
HOH
284
A
HOH
234
4
HOH
HOH
285
A
HOH
237
4
HOH
HOH
286
A
HOH
240
4
HOH
HOH
287
A
HOH
241
4
HOH
HOH
288
A
HOH
242
4
HOH
HOH
289
A
HOH
243
4
HOH
HOH
290
A
HOH
244
4
HOH
HOH
291
A
HOH
245
4
HOH
HOH
292
A
HOH
248
4
HOH
HOH
293
A
HOH
249
4
HOH
HOH
294
A
HOH
250
4
HOH
HOH
295
A
n
1
21
A
n
2
22
A
n
3
23
A
PRO
24
n
4
PRO
24
A
PRO
25
n
5
PRO
25
A
PRO
26
n
6
PRO
26
A
SER
27
n
7
SER
27
A
GLU
28
n
8
GLU
28
A
THR
29
n
9
THR
29
A
HIS
30
n
10
HIS
30
A
LYS
31
n
11
LYS
31
A
LEU
32
n
12
LEU
32
A
VAL
33
n
13
VAL
33
A
VAL
34
n
14
VAL
34
A
VAL
35
n
15
VAL
35
A
GLY
36
n
16
GLY
36
A
GLY
37
n
17
GLY
37
A
GLY
38
n
18
GLY
38
A
GLY
39
n
19
GLY
39
A
VAL
40
n
20
VAL
40
A
GLY
41
n
21
GLY
41
A
LYS
42
n
22
LYS
42
A
SER
43
n
23
SER
43
A
ALA
44
n
24
ALA
44
A
LEU
45
n
25
LEU
45
A
THR
46
n
26
THR
46
A
ILE
47
n
27
ILE
47
A
GLN
48
n
28
GLN
48
A
PHE
49
n
29
PHE
49
A
ILE
50
n
30
ILE
50
A
GLN
51
n
31
GLN
51
A
SER
52
n
32
SER
52
A
TYR
53
n
33
TYR
53
A
PHE
54
n
34
PHE
54
A
VAL
55
n
35
VAL
55
A
SER
56
n
36
SER
56
A
ASP
57
n
37
ASP
57
A
TYR
58
n
38
TYR
58
A
ASP
59
n
39
ASP
59
A
PRO
60
n
40
PRO
60
A
THR
61
n
41
THR
61
A
ILE
62
n
42
ILE
62
A
GLU
63
n
43
GLU
63
A
ASP
64
n
44
ASP
64
A
SER
65
n
45
SER
65
A
TYR
66
n
46
TYR
66
A
THR
67
n
47
THR
67
A
LYS
68
n
48
LYS
68
A
ILE
69
n
49
ILE
69
A
CYS
70
n
50
CYS
70
A
SER
71
n
51
SER
71
A
VAL
72
n
52
VAL
72
A
ASP
73
n
53
ASP
73
A
GLY
74
n
54
GLY
74
A
ILE
75
n
55
ILE
75
A
PRO
76
n
56
PRO
76
A
ALA
77
n
57
ALA
77
A
ARG
78
n
58
ARG
78
A
LEU
79
n
59
LEU
79
A
ASP
80
n
60
ASP
80
A
ILE
81
n
61
ILE
81
A
LEU
82
n
62
LEU
82
A
ASP
83
n
63
ASP
83
A
THR
84
n
64
THR
84
A
ALA
85
n
65
ALA
85
A
GLY
86
n
66
GLY
86
A
GLN
87
n
67
GLN
87
A
GLU
88
n
68
GLU
88
A
GLU
89
n
69
GLU
89
A
PHE
90
n
70
PHE
90
A
GLY
91
n
71
GLY
91
A
ALA
92
n
72
ALA
92
A
MET
93
n
73
MET
93
A
ARG
94
n
74
ARG
94
A
GLU
95
n
75
GLU
95
A
GLN
96
n
76
GLN
96
A
TYR
97
n
77
TYR
97
A
MET
98
n
78
MET
98
A
ARG
99
n
79
ARG
99
A
ALA
100
n
80
ALA
100
A
GLY
101
n
81
GLY
101
A
HIS
102
n
82
HIS
102
A
GLY
103
n
83
GLY
103
A
PHE
104
n
84
PHE
104
A
LEU
105
n
85
LEU
105
A
LEU
106
n
86
LEU
106
A
VAL
107
n
87
VAL
107
A
PHE
108
n
88
PHE
108
A
ALA
109
n
89
ALA
109
A
ILE
110
n
90
ILE
110
A
ASN
111
n
91
ASN
111
A
ASP
112
n
92
ASP
112
A
ARG
113
n
93
ARG
113
A
GLN
114
n
94
GLN
114
A
SER
115
n
95
SER
115
A
PHE
116
n
96
PHE
116
A
ASN
117
n
97
ASN
117
A
GLU
118
n
98
GLU
118
A
VAL
119
n
99
VAL
119
A
GLY
120
n
100
GLY
120
A
LYS
121
n
101
LYS
121
A
LEU
122
n
102
LEU
122
A
PHE
123
n
103
PHE
123
A
THR
124
n
104
THR
124
A
GLN
125
n
105
GLN
125
A
ILE
126
n
106
ILE
126
A
LEU
127
n
107
LEU
127
A
ARG
128
n
108
ARG
128
A
VAL
129
n
109
VAL
129
A
LYS
130
n
110
LYS
130
A
ASP
131
n
111
ASP
131
A
ARG
132
n
112
ARG
132
A
ASP
133
n
113
ASP
133
A
ASP
134
n
114
ASP
134
A
PHE
135
n
115
PHE
135
A
PRO
136
n
116
PRO
136
A
VAL
137
n
117
VAL
137
A
VAL
138
n
118
VAL
138
A
LEU
139
n
119
LEU
139
A
VAL
140
n
120
VAL
140
A
GLY
141
n
121
GLY
141
A
ASN
142
n
122
ASN
142
A
LYS
143
n
123
LYS
143
A
ALA
144
n
124
ALA
144
A
ASP
145
n
125
ASP
145
A
LEU
146
n
126
LEU
146
A
GLU
147
n
127
GLU
147
A
SER
148
n
128
SER
148
A
GLN
149
n
129
GLN
149
A
ARG
150
n
130
ARG
150
A
GLN
151
n
131
GLN
151
A
VAL
152
n
132
VAL
152
A
PRO
153
n
133
PRO
153
A
ARG
154
n
134
ARG
154
A
SER
155
n
135
SER
155
A
GLU
156
n
136
GLU
156
A
ALA
157
n
137
ALA
157
A
SER
158
n
138
SER
158
A
ALA
159
n
139
ALA
159
A
PHE
160
n
140
PHE
160
A
GLY
161
n
141
GLY
161
A
ALA
162
n
142
ALA
162
A
SER
163
n
143
SER
163
A
HIS
164
n
144
HIS
164
A
HIS
165
n
145
HIS
165
A
VAL
166
n
146
VAL
166
A
ALA
167
n
147
ALA
167
A
TYR
168
n
148
TYR
168
A
PHE
169
n
149
PHE
169
A
GLU
170
n
150
GLU
170
A
ALA
171
n
151
ALA
171
A
SER
172
n
152
SER
172
A
ALA
173
n
153
ALA
173
A
LYS
174
n
154
LYS
174
A
LEU
175
n
155
LEU
175
A
ARG
176
n
156
ARG
176
A
LEU
177
n
157
LEU
177
A
ASN
178
n
158
ASN
178
A
VAL
179
n
159
VAL
179
A
ASP
180
n
160
ASP
180
A
GLU
181
n
161
GLU
181
A
ALA
182
n
162
ALA
182
A
PHE
183
n
163
PHE
183
A
GLU
184
n
164
GLU
184
A
GLN
185
n
165
GLN
185
A
LEU
186
n
166
LEU
186
A
VAL
187
n
167
VAL
187
A
ARG
188
n
168
ARG
188
A
ALA
189
n
169
ALA
189
A
VAL
190
n
170
VAL
190
A
ARG
191
n
171
ARG
191
A
LYS
192
n
172
LYS
192
A
TYR
193
n
173
TYR
193
A
GLN
194
n
174
GLN
194
A
GLU
195
n
175
GLU
195
A
GLN
196
n
176
GLN
196
A
n
177
197
A
n
178
198
A
n
179
199
A
n
180
200
A
n
181
201
A
3.6860
0.2655
-0.1999
3.2040
0.0325
3.5745
0.0678
-1.0051
-0.1337
0.5134
-0.1210
-0.1763
0.2643
0.4944
0.0533
-0.0680
0.0281
0.0285
0.2258
0.0963
-0.1171
refined
7.7335
29.4233
18.2970
X-RAY DIFFRACTION
3.7043
1.0275
-0.5214
3.0817
-0.1257
3.2264
0.1143
-0.5526
0.3133
0.1285
-0.2222
0.0964
-0.2167
0.3086
0.1079
-0.2168
-0.0015
0.0508
-0.0565
-0.0245
-0.1530
refined
2.8945
38.1252
9.0429
X-RAY DIFFRACTION
A
24
A
4
A
96
A
76
X-RAY DIFFRACTION
1
A
97
A
77
A
196
A
176
X-RAY DIFFRACTION
2
author_defined_assembly
1
monomeric
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
A
SER
43
A
OG
SER
23
1_555
88.4
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
230
D
O
HOH
1_555
87.8
A
SER
43
A
OG
SER
23
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
230
D
O
HOH
1_555
176.1
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
236
D
O
HOH
1_555
86.5
A
SER
43
A
OG
SER
23
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
236
D
O
HOH
1_555
84.1
A
HOH
230
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
236
D
O
HOH
1_555
94.7
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
240
D
O
HOH
1_555
175.5
A
SER
43
A
OG
SER
23
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
240
D
O
HOH
1_555
93.3
A
HOH
230
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
240
D
O
HOH
1_555
90.5
A
HOH
236
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
240
D
O
HOH
1_555
89.6
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
99.9
A
SER
43
A
OG
SER
23
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
86.9
A
HOH
230
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
94.7
A
HOH
236
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
168.8
A
HOH
240
D
O
HOH
1_555
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
84.3
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
68
A
N
LYS
48
A
O
LEU
79
A
O
LEU
59
A
O
ARG
78
A
O
ARG
58
A
N
HIS
30
A
N
HIS
10
A
N
VAL
35
A
N
VAL
15
A
O
VAL
107
A
O
VAL
87
A
N
PHE
108
A
N
PHE
88
A
O
ASN
142
A
O
ASN
122
A
N
GLY
141
A
N
GLY
121
A
O
PHE
169
A
O
PHE
149
1
A
CD
LYS
31
A
CD
LYS
11
1
Y
1
A
CE
LYS
31
A
CE
LYS
11
1
Y
1
A
NZ
LYS
31
A
NZ
LYS
11
1
Y
1
A
CD
GLN
96
A
CD
GLN
76
1
Y
1
A
OE1
GLN
96
A
OE1
GLN
76
1
Y
1
A
NE2
GLN
96
A
NE2
GLN
76
1
Y
1
A
CG
GLN
114
A
CG
GLN
94
1
Y
1
A
CD
GLN
114
A
CD
GLN
94
1
Y
1
A
OE1
GLN
114
A
OE1
GLN
94
1
Y
1
A
NE2
GLN
114
A
NE2
GLN
94
1
Y
1
A
CD
LYS
121
A
CD
LYS
101
1
Y
1
A
CE
LYS
121
A
CE
LYS
101
1
Y
1
A
NZ
LYS
121
A
NZ
LYS
101
1
Y
1
A
CD
LYS
192
A
CD
LYS
172
1
Y
1
A
CE
LYS
192
A
CE
LYS
172
1
Y
1
A
NZ
LYS
192
A
NZ
LYS
172
1
Y
1
A
SER
21
A
SER
1
1
Y
1
A
MET
22
A
MET
2
1
Y
1
A
ASP
23
A
ASP
3
1
Y
1
A
GLU
197
A
GLU
177
1
Y
1
A
LEU
198
A
LEU
178
1
Y
1
A
PRO
199
A
PRO
179
1
Y
1
A
PRO
200
A
PRO
180
1
Y
1
A
SER
201
A
SER
181
1
Y
1
A
A
OD1
O
ASP
HOH
73
265
2.11
1
A
PRO
25
-47.40
160.03
1
A
PRO
26
-87.10
-110.88
1
A
GLU
28
-95.13
39.92
1
A
ASP
57
-143.24
49.47
1
A
ASP
59
-17.53
102.56
1
A
GLU
89
-136.84
-42.13
1
A
LYS
143
72.01
37.67
1
A
LEU
146
-109.91
44.62
30.889
0.33
0.16
0.00
0.33
0.00
-0.49
0.962
0.949
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2506
0.21468
0.2165
0.2165
1.65
37.4
1039
19180
19180
5.1
95.69
5.224
0.095
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0
MOLECULAR REPLACEMENT
0.122
0.118
0.80
0.80
1.40
2ERY.pdb
MAXIMUM LIKELIHOOD
MASK
1.65
37.4
94
1467
29
0
1344
0.012
0.022
1411
0.002
0.020
949
1.390
1.974
1917
0.936
3.000
2295
6.168
5.000
174
29.789
23.571
70
13.135
15.000
223
15.926
15.000
12
0.088
0.200
210
0.005
0.020
1588
0.001
0.020
308
0.211
0.200
281
0.205
0.200
1033
0.179
0.200
700
0.083
0.200
742
0.163
0.200
84
0.160
0.200
1
0.184
0.200
10
0.224
0.200
23
0.183
0.200
9
0.776
1.500
927
0.198
1.500
355
1.077
2.000
1384
1.741
3.000
599
2.585
4.500
532
0.304
0.27
1.693
85
1446
20
100.00
1.65
50
2FN4
20362
0
0
1
6.1
95.7
1.65
1.71
1
5.1
100.0
refinement
REFMAC
5.2.0019
data reduction
HKL-2000
data scaling
SCALEPACK
phasing
PHASER
The crystal structure of human Ras-related protein, RRAS, in the GDP-bound state
1
N
N
2
N
N
3
N
N
4
N
N
A
GLY
41
A
GLY
21
HELX_P
A
SER
52
A
SER
32
1
1
12
A
MET
93
A
MET
73
HELX_P
A
GLY
101
A
GLY
81
1
2
9
A
ASP
112
A
ASP
92
HELX_P
A
ASP
131
A
ASP
111
1
3
20
A
LYS
143
A
LYS
123
HELX_P
A
ARG
150
A
ARG
130
5
4
8
A
PRO
153
A
PRO
133
HELX_P
A
HIS
164
A
HIS
144
1
5
12
A
ASN
178
A
ASN
158
HELX_P
A
GLN
194
A
GLN
174
1
6
17
metalc
2.076
A
GDP
1
C
O2B
GDP
1_555
A
MG
2
B
MG
MG
1_555
metalc
2.108
A
MG
2
B
MG
MG
1_555
A
SER
43
A
OG
SER
23
1_555
metalc
2.079
A
MG
2
B
MG
MG
1_555
A
HOH
230
D
O
HOH
1_555
metalc
2.383
A
MG
2
B
MG
MG
1_555
A
HOH
236
D
O
HOH
1_555
metalc
2.165
A
MG
2
B
MG
MG
1_555
A
HOH
240
D
O
HOH
1_555
metalc
1.830
A
MG
2
B
MG
MG
1_555
A
HOH
249
D
O
HOH
1_555
SIGNALING PROTEIN
RRAS, GDP/GTP binding, GTP hydrolysis, Structural Genomics, Structural Genomics Consortium, SGC, SIGNALING PROTEIN
RRAS_HUMAN
UNP
1
23
P10301
DPPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGH
GFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEA
FEQLVRAVRKYQEQELPPS
23
201
2FN4
23
201
P10301
A
1
3
181
1
cloning artifact
SER
21
2FN4
A
P10301
UNP
1
1
cloning artifact
MET
22
2FN4
A
P10301
UNP
2
6
anti-parallel
parallel
parallel
parallel
parallel
A
ASP
64
A
ASP
44
A
VAL
72
A
VAL
52
A
ILE
75
A
ILE
55
A
ASP
83
A
ASP
63
A
THR
29
A
THR
9
A
GLY
36
A
GLY
16
A
GLY
103
A
GLY
83
A
ALA
109
A
ALA
89
A
VAL
137
A
VAL
117
A
ASN
142
A
ASN
122
A
ALA
167
A
ALA
147
A
GLU
170
A
GLU
150
BINDING SITE FOR RESIDUE MG A 2
A
MG
2
Software
6
BINDING SITE FOR RESIDUE GDP A 1
A
GDP
1
Software
24
A
GDP
1
C
GDP
6
1_555
A
SER
43
A
SER
23
6
1_555
A
HOH
230
D
HOH
6
1_555
A
HOH
236
D
HOH
6
1_555
A
HOH
240
D
HOH
6
1_555
A
HOH
249
D
HOH
6
1_555
A
MG
2
B
MG
24
1_555
A
GLY
39
A
GLY
19
24
1_555
A
VAL
40
A
VAL
20
24
1_555
A
GLY
41
A
GLY
21
24
1_555
A
LYS
42
A
LYS
22
24
1_555
A
SER
43
A
SER
23
24
1_555
A
ALA
44
A
ALA
24
24
1_555
A
SER
56
A
SER
36
24
1_555
A
ASN
142
A
ASN
122
24
1_555
A
LYS
143
A
LYS
123
24
1_555
A
ASP
145
A
ASP
125
24
1_555
A
LEU
146
A
LEU
126
24
1_555
A
SER
172
A
SER
152
24
1_555
A
ALA
173
A
ALA
153
24
1_555
A
LYS
174
A
LYS
154
24
1_555
A
HOH
230
D
HOH
24
1_555
A
HOH
236
D
HOH
24
1_555
A
HOH
249
D
HOH
24
1_555
A
HOH
251
D
HOH
24
1_555
A
HOH
267
D
HOH
24
1_555
A
HOH
268
D
HOH
24
1_555
A
HOH
277
D
HOH
24
1_555
A
HOH
283
D
HOH
24
1_445
A
HOH
293
D
HOH
24
1_555
152
P 31 2 1