0.01195 0.00690 0.00000 0.00000 0.01380 0.00000 0.00000 0.00000 0.02787 0.00000 0.00000 0.00000 Meinke, G. Bullock, P.A. Bohm, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 83.669 83.669 35.880 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C6 H5 O7 -3 189.100 CITRATE ANION non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N C N 89 N C N 90 N C N 91 N C N 92 N C N 93 N C N 94 N O N 95 N O N 96 N O N 97 N O N 98 N O N 99 N O N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N N N 107 S C N 108 N C N 109 N O N 110 N C N 111 N C N 112 N C N 113 N O N 114 N N N 115 N O N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N N N 127 S C N 128 N C N 129 N O N 130 N C N 131 N C N 132 N C N 133 N O N 134 N O N 135 N O N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N N N 146 N C N 147 N C N 148 N O N 149 N O N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C Y 160 N C Y 161 N N Y 162 N C Y 163 N C Y 164 N N N 165 N O N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N O N 177 N H N 178 N H N 179 N N N 180 S C N 181 N C N 182 N O N 183 S C N 184 N C N 185 N C N 186 N C N 187 N O N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N N N 202 S C N 203 N C N 204 N O N 205 N C N 206 N C N 207 N C N 208 N C N 209 N O N 210 N H N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N C N 230 N C N 231 N N N 232 N O N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N N N 249 S C N 250 N C N 251 N O N 252 N C N 253 N C N 254 N S N 255 N C N 256 N O N 257 N H N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N N N 269 S C N 270 N C N 271 N O N 272 N O N 273 N C N 274 N C N 275 N SE N 276 N C N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N N N 289 S C N 290 N C N 291 N O N 292 N C Y 293 N C Y 294 N C Y 295 N C Y 296 N C Y 297 N C Y 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N N N 312 S C N 313 N C N 314 N O N 315 N C N 316 N C N 317 N C N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N N N 329 S C N 330 N C N 331 N O N 332 N C N 333 N O N 334 N O N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N N N 343 S C N 344 N C N 345 N O N 346 R C N 347 N O N 348 N C N 349 N O N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N N N 360 S C N 361 N C N 362 N O N 363 N C Y 364 N C Y 365 N C Y 366 N C Y 367 N C Y 368 N C Y 369 N C N 370 N O N 371 N O N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N H N 381 N H N 382 N H N 383 N N N 384 S C N 385 N C N 386 N O N 387 N C N 388 N C N 389 N C N 390 N O N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N doub N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N doub N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N doub N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N doub N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N doub N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N doub N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing Y 157 N sing Y 158 N doub Y 159 N doub N 160 N sing Y 161 N sing N 162 N sing Y 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N doub N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N doub N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing Y 284 N doub Y 285 N sing Y 286 N sing N 287 N sing Y 288 N doub N 289 N sing Y 290 N doub N 291 N sing Y 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing US J.Virol. JOVIAM 0825 0022-538X 80 4304 4312 10.1128/JVI.80.9.4304-4312.2006 16611889 Crystal structure of the simian virus 40 large T-antigen origin-binding domain. 2006 10.2210/pdb2fuf/pdb pdb_00002fuf 100 1 crystal CCD 2005-03-07 ADSC QUANTUM 315 double crystal SINGLE WAVELENGTH M x-ray 1 0.9793 1.0 12.10 275942 0.070 2.05 1.450 50.000 25306 98.70 10.90 X29A NSLS 0.9793 SYNCHROTRON NSLS BEAMLINE X29A 15508.424 Large T antigen DNA binding domain (residues 131-259) 1 man polymer 189.100 CITRATE ANION 1 syn non-polymer 18.015 water 170 nat water no yes GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKI(MSE)EKYSVTFISRHNSYNHNILFFLTPHRHR VSAINNYAQKLCTFSFLICKGVNKEYL(MSE)YSALTRDPFSVIEESLPGGLKEHDFNPESS GSKVEDPKDFPSELLSFLSHAVFSNRTLACFAIYTTKEKAALLYKKIMEKYSVTFISRHNSYNHNILFFLTPHRHRVSAI NNYAQKLCTFSFLICKGVNKEYLMYSALTRDPFSVIEESLPGGLKEHDFNPESS A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Polyomavirus Escherichia Escherichia coli sample SV40 A GENE 10633 Simian virus 40 511693 Escherichia coli BL21 BL21 PLASMID pGEX-1lT 1 2.34 47.36 VAPOR DIFFUSION, HANGING DROP 6.7 1.6 M Sodium citrate, pH 6.7, VAPOR DIFFUSION, HANGING DROP, temperature 298K 298 software chem_comp_atom chem_comp_bond database_2 pdbx_initial_refinement_model struct_conn struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond repository Initial release Version format compliance Advisory Version format compliance Refinement description Data collection Database references Derived calculations Refinement description Data collection 1 0 2006-08-22 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-08-30 1 5 2023-11-15 _software.classification _software.contact_author _software.contact_author_email _software.date _software.language _software.location _software.name _software.type _software.version _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _chem_comp_atom.atom_id _chem_comp_bond.atom_id_2 NMR structure of same protein RCSB Y RCSB 2006-01-26 REL REL 0.050 5.181 2652 99.60 10.90 0.064 3.604 2581 99.70 10.60 0.074 2.912 2545 99.50 11.00 0.084 2.179 2538 99.00 11.10 0.107 1.569 2550 99.20 11.20 0.142 1.202 2505 98.90 11.20 0.193 1.024 2516 98.60 11.20 0.260 0.927 2513 98.30 11.20 0.343 0.835 2490 97.60 10.90 0.441 0.790 2416 96.30 9.70 FLC CITRATE ANION HOH water 1TBD PDB experimental model FLC 200 2 FLC FLC 263 A HOH 1 3 HOH HOH 264 A HOH 2 3 HOH HOH 265 A HOH 3 3 HOH HOH 266 A HOH 4 3 HOH HOH 267 A HOH 5 3 HOH HOH 268 A HOH 6 3 HOH HOH 269 A HOH 7 3 HOH HOH 270 A HOH 8 3 HOH HOH 271 A HOH 9 3 HOH HOH 272 A HOH 10 3 HOH HOH 273 A HOH 11 3 HOH HOH 274 A HOH 12 3 HOH HOH 275 A HOH 13 3 HOH HOH 276 A HOH 14 3 HOH HOH 277 A HOH 15 3 HOH HOH 278 A HOH 16 3 HOH HOH 279 A HOH 17 3 HOH HOH 280 A HOH 18 3 HOH HOH 281 A HOH 19 3 HOH HOH 282 A HOH 20 3 HOH HOH 283 A HOH 21 3 HOH HOH 284 A HOH 22 3 HOH HOH 285 A HOH 23 3 HOH HOH 286 A HOH 24 3 HOH HOH 287 A HOH 25 3 HOH HOH 288 A HOH 26 3 HOH HOH 289 A HOH 27 3 HOH HOH 290 A HOH 28 3 HOH HOH 291 A HOH 29 3 HOH HOH 292 A HOH 30 3 HOH HOH 293 A HOH 31 3 HOH HOH 294 A HOH 32 3 HOH HOH 295 A HOH 33 3 HOH HOH 296 A HOH 34 3 HOH HOH 297 A HOH 35 3 HOH HOH 298 A HOH 36 3 HOH HOH 299 A HOH 37 3 HOH HOH 300 A HOH 38 3 HOH HOH 301 A HOH 39 3 HOH HOH 302 A HOH 40 3 HOH HOH 303 A HOH 41 3 HOH HOH 304 A HOH 42 3 HOH HOH 305 A HOH 43 3 HOH HOH 306 A HOH 44 3 HOH HOH 307 A HOH 45 3 HOH HOH 308 A HOH 46 3 HOH HOH 309 A HOH 47 3 HOH HOH 310 A HOH 48 3 HOH HOH 311 A HOH 49 3 HOH HOH 312 A HOH 50 3 HOH HOH 313 A HOH 51 3 HOH HOH 314 A HOH 52 3 HOH HOH 315 A HOH 53 3 HOH HOH 316 A HOH 54 3 HOH HOH 317 A HOH 55 3 HOH HOH 318 A HOH 56 3 HOH HOH 319 A HOH 57 3 HOH HOH 320 A HOH 58 3 HOH HOH 321 A HOH 59 3 HOH HOH 322 A HOH 60 3 HOH HOH 323 A HOH 61 3 HOH HOH 324 A HOH 62 3 HOH HOH 325 A HOH 63 3 HOH HOH 326 A HOH 64 3 HOH HOH 327 A HOH 65 3 HOH HOH 328 A HOH 66 3 HOH HOH 329 A HOH 67 3 HOH HOH 330 A HOH 68 3 HOH HOH 331 A HOH 69 3 HOH HOH 332 A HOH 70 3 HOH HOH 333 A HOH 71 3 HOH HOH 334 A HOH 72 3 HOH HOH 335 A HOH 73 3 HOH HOH 336 A HOH 74 3 HOH HOH 337 A HOH 75 3 HOH HOH 338 A HOH 76 3 HOH HOH 339 A HOH 77 3 HOH HOH 340 A HOH 78 3 HOH HOH 341 A HOH 79 3 HOH HOH 342 A HOH 80 3 HOH HOH 343 A HOH 81 3 HOH HOH 344 A HOH 82 3 HOH HOH 345 A HOH 83 3 HOH HOH 346 A HOH 84 3 HOH HOH 347 A HOH 85 3 HOH HOH 348 A HOH 86 3 HOH HOH 349 A HOH 87 3 HOH HOH 350 A HOH 88 3 HOH HOH 351 A HOH 89 3 HOH HOH 352 A HOH 90 3 HOH HOH 353 A HOH 91 3 HOH HOH 354 A HOH 92 3 HOH HOH 355 A HOH 93 3 HOH HOH 356 A HOH 94 3 HOH HOH 357 A HOH 95 3 HOH HOH 358 A HOH 96 3 HOH HOH 359 A HOH 97 3 HOH HOH 360 A HOH 98 3 HOH HOH 361 A HOH 99 3 HOH HOH 362 A HOH 100 3 HOH HOH 363 A HOH 101 3 HOH HOH 364 A HOH 102 3 HOH HOH 365 A HOH 103 3 HOH HOH 366 A HOH 104 3 HOH HOH 367 A HOH 105 3 HOH HOH 368 A HOH 106 3 HOH HOH 369 A HOH 107 3 HOH HOH 370 A HOH 108 3 HOH HOH 371 A HOH 109 3 HOH HOH 372 A HOH 110 3 HOH HOH 373 A HOH 111 3 HOH HOH 374 A HOH 112 3 HOH HOH 375 A HOH 113 3 HOH HOH 376 A HOH 114 3 HOH HOH 377 A HOH 115 3 HOH HOH 378 A HOH 116 3 HOH HOH 379 A HOH 117 3 HOH HOH 380 A HOH 118 3 HOH HOH 381 A HOH 119 3 HOH HOH 382 A HOH 120 3 HOH HOH 383 A HOH 121 3 HOH HOH 384 A HOH 122 3 HOH HOH 385 A HOH 123 3 HOH HOH 386 A HOH 124 3 HOH HOH 387 A HOH 125 3 HOH HOH 388 A HOH 126 3 HOH HOH 389 A HOH 127 3 HOH HOH 390 A HOH 128 3 HOH HOH 391 A HOH 129 3 HOH HOH 392 A HOH 130 3 HOH HOH 393 A HOH 131 3 HOH HOH 394 A HOH 132 3 HOH HOH 395 A HOH 133 3 HOH HOH 396 A HOH 134 3 HOH HOH 397 A HOH 135 3 HOH HOH 398 A HOH 136 3 HOH HOH 399 A HOH 137 3 HOH HOH 400 A HOH 138 3 HOH HOH 401 A HOH 139 3 HOH HOH 402 A HOH 140 3 HOH HOH 403 A HOH 141 3 HOH HOH 404 A HOH 142 3 HOH HOH 405 A HOH 143 3 HOH HOH 406 A HOH 144 3 HOH HOH 407 A HOH 145 3 HOH HOH 408 A HOH 146 3 HOH HOH 409 A HOH 147 3 HOH HOH 410 A HOH 148 3 HOH HOH 411 A HOH 149 3 HOH HOH 412 A HOH 150 3 HOH HOH 413 A HOH 151 3 HOH HOH 414 A HOH 152 3 HOH HOH 415 A HOH 153 3 HOH HOH 416 A HOH 154 3 HOH HOH 417 A HOH 155 3 HOH HOH 418 A HOH 156 3 HOH HOH 419 A HOH 157 3 HOH HOH 420 A HOH 158 3 HOH HOH 421 A HOH 159 3 HOH HOH 422 A HOH 160 3 HOH HOH 423 A HOH 161 3 HOH HOH 424 A HOH 162 3 HOH HOH 425 A HOH 163 3 HOH HOH 426 A HOH 164 3 HOH HOH 427 A HOH 165 3 HOH HOH 428 A HOH 166 3 HOH HOH 429 A HOH 167 3 HOH HOH 430 A HOH 168 3 HOH HOH 431 A HOH 169 3 HOH HOH 432 A HOH 170 3 HOH HOH 433 A Se 9.544 0.594 0.029 0.006 1.647 Se 23.852 0.701 0.819 0.146 2.430 0.480 251 0.530 430 0.530 536 0.550 628 0.560 713 0.560 783 0.570 837 0.570 916 0.830 0.850 0.620 5094 4596 498 0.880 0.920 0.750 224 169 55 0.880 0.910 0.690 697 599 98 0.900 0.920 0.700 854 764 90 0.860 0.880 0.650 864 789 75 0.790 0.810 0.510 1502 1386 116 0.730 0.750 0.480 953 889 64 n 1 129 A n 2 130 A LYS 131 n 3 LYS 131 A VAL 132 n 4 VAL 132 A GLU 133 n 5 GLU 133 A ASP 134 n 6 ASP 134 A PRO 135 n 7 PRO 135 A LYS 136 n 8 LYS 136 A ASP 137 n 9 ASP 137 A PHE 138 n 10 PHE 138 A PRO 139 n 11 PRO 139 A SER 140 n 12 SER 140 A GLU 141 n 13 GLU 141 A LEU 142 n 14 LEU 142 A LEU 143 n 15 LEU 143 A SER 144 n 16 SER 144 A PHE 145 n 17 PHE 145 A LEU 146 n 18 LEU 146 A SER 147 n 19 SER 147 A HIS 148 n 20 HIS 148 A ALA 149 n 21 ALA 149 A VAL 150 n 22 VAL 150 A PHE 151 n 23 PHE 151 A SER 152 n 24 SER 152 A ASN 153 n 25 ASN 153 A ARG 154 n 26 ARG 154 A THR 155 n 27 THR 155 A LEU 156 n 28 LEU 156 A ALA 157 n 29 ALA 157 A CYS 158 n 30 CYS 158 A PHE 159 n 31 PHE 159 A ALA 160 n 32 ALA 160 A ILE 161 n 33 ILE 161 A TYR 162 n 34 TYR 162 A THR 163 n 35 THR 163 A THR 164 n 36 THR 164 A LYS 165 n 37 LYS 165 A GLU 166 n 38 GLU 166 A LYS 167 n 39 LYS 167 A ALA 168 n 40 ALA 168 A ALA 169 n 41 ALA 169 A LEU 170 n 42 LEU 170 A LEU 171 n 43 LEU 171 A TYR 172 n 44 TYR 172 A LYS 173 n 45 LYS 173 A LYS 174 n 46 LYS 174 A ILE 175 n 47 ILE 175 A MSE 176 n 48 MSE 176 A GLU 177 n 49 GLU 177 A LYS 178 n 50 LYS 178 A TYR 179 n 51 TYR 179 A SER 180 n 52 SER 180 A VAL 181 n 53 VAL 181 A THR 182 n 54 THR 182 A PHE 183 n 55 PHE 183 A ILE 184 n 56 ILE 184 A SER 185 n 57 SER 185 A ARG 186 n 58 ARG 186 A HIS 187 n 59 HIS 187 A ASN 188 n 60 ASN 188 A SER 189 n 61 SER 189 A TYR 190 n 62 TYR 190 A ASN 191 n 63 ASN 191 A HIS 192 n 64 HIS 192 A ASN 193 n 65 ASN 193 A ILE 194 n 66 ILE 194 A LEU 195 n 67 LEU 195 A PHE 196 n 68 PHE 196 A PHE 197 n 69 PHE 197 A LEU 198 n 70 LEU 198 A THR 199 n 71 THR 199 A PRO 200 n 72 PRO 200 A HIS 201 n 73 HIS 201 A ARG 202 n 74 ARG 202 A HIS 203 n 75 HIS 203 A ARG 204 n 76 ARG 204 A VAL 205 n 77 VAL 205 A SER 206 n 78 SER 206 A ALA 207 n 79 ALA 207 A ILE 208 n 80 ILE 208 A ASN 209 n 81 ASN 209 A ASN 210 n 82 ASN 210 A TYR 211 n 83 TYR 211 A ALA 212 n 84 ALA 212 A GLN 213 n 85 GLN 213 A LYS 214 n 86 LYS 214 A LEU 215 n 87 LEU 215 A CYS 216 n 88 CYS 216 A THR 217 n 89 THR 217 A PHE 218 n 90 PHE 218 A SER 219 n 91 SER 219 A PHE 220 n 92 PHE 220 A LEU 221 n 93 LEU 221 A ILE 222 n 94 ILE 222 A CYS 223 n 95 CYS 223 A LYS 224 n 96 LYS 224 A GLY 225 n 97 GLY 225 A VAL 226 n 98 VAL 226 A ASN 227 n 99 ASN 227 A LYS 228 n 100 LYS 228 A GLU 229 n 101 GLU 229 A TYR 230 n 102 TYR 230 A LEU 231 n 103 LEU 231 A MSE 232 n 104 MSE 232 A TYR 233 n 105 TYR 233 A SER 234 n 106 SER 234 A ALA 235 n 107 ALA 235 A LEU 236 n 108 LEU 236 A THR 237 n 109 THR 237 A ARG 238 n 110 ARG 238 A ASP 239 n 111 ASP 239 A PRO 240 n 112 PRO 240 A PHE 241 n 113 PHE 241 A SER 242 n 114 SER 242 A VAL 243 n 115 VAL 243 A ILE 244 n 116 ILE 244 A GLU 245 n 117 GLU 245 A GLU 246 n 118 GLU 246 A SER 247 n 119 SER 247 A LEU 248 n 120 LEU 248 A PRO 249 n 121 PRO 249 A GLY 250 n 122 GLY 250 A GLY 251 n 123 GLY 251 A LEU 252 n 124 LEU 252 A LYS 253 n 125 LYS 253 A GLU 254 n 126 GLU 254 A HIS 255 n 127 HIS 255 A ASP 256 n 128 ASP 256 A n 129 257 A n 130 258 A n 131 259 A n 132 260 A n 133 261 A n 134 262 A 1.2810 -0.0872 0.2714 0.8212 -0.0407 0.8451 0.0186 0.0698 -0.0130 -0.0091 0.0421 -0.0080 -0.0298 -0.0374 -0.0607 -0.0510 0.0012 0.0011 -0.0302 -0.0087 -0.0179 refined 12.6360 72.1600 0.8010 X-RAY DIFFRACTION A 131 A 3 A 256 A 128 X-RAY DIFFRACTION 1 ALL author_defined_assembly 6 hexameric A MSE 176 SELENOMETHIONINE A MSE 48 MET A MSE 232 SELENOMETHIONINE A MSE 104 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.5000000000 -0.8660254038 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 6_655 x-y+1,x,z+5/6 crystal symmetry operation 83.6690000000 0.0000000000 29.9000000000 -0.5000000000 -0.8660254038 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 2_765 -y+2,x-y+1,z+2/3 crystal symmetry operation 125.5035000000 72.4594795092 23.9200000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 4_775 -x+2,-y+2,z+1/2 crystal symmetry operation 83.6690000000 144.9189590185 17.9400000000 -0.5000000000 0.8660254038 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 3_675 -x+y+1,-x+2,z+1/3 crystal symmetry operation 0.0000000000 144.9189590185 11.9600000000 0.5000000000 0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 5_565 y,-x+y+1,z+1/6 crystal symmetry operation -41.8345000000 72.4594795092 5.9800000000 A O ILE 222 A O ILE 94 A N TYR 162 A N TYR 34 A N LEU 156 A N LEU 28 A O HIS 203 A O HIS 75 A O PHE 196 A O PHE 68 A N SER 185 A N SER 57 A N ARG 186 A N ARG 58 A O ILE 244 A O ILE 116 1 A GLY 129 A GLY 1 1 Y 1 A SER 130 A SER 2 1 Y 1 A PHE 257 A PHE 129 1 Y 1 A ASN 258 A ASN 130 1 Y 1 A PRO 259 A PRO 131 1 Y 1 A GLU 260 A GLU 132 1 Y 1 A SER 261 A SER 133 1 Y 1 A SER 262 A SER 134 1 Y 1 A HIS 192 -119.11 -167.41 1 A ASP 239 B -29.69 125.98 2.50 30.00 0.550 5094 19.648 -0.200 -0.100 0.000 -0.200 0.000 0.300 0.966 0.959 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.189 0.169 0.17 0.17 1.450 50 1252 25306 24796 4.900 98.740 1.905 0.037 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 0.00 SAD 0.065 0.064 0.800 0.800 1.200 1TBD MAXIMUM LIKELIHOOD MASK 1.450 50 170 1212 13 0 1029 0.008 0.022 1143 1.141 1.961 1558 6.000 5.000 144 29.999 23.265 49 12.112 15.000 205 7.742 15.000 5 0.082 0.200 170 0.005 0.020 879 0.199 0.200 554 0.307 0.200 820 0.096 0.200 138 0.212 0.200 68 0.151 0.200 21 0.716 1.500 705 1.195 2.000 1127 1.791 3.000 489 2.671 4.500 429 0.27 0.205 1.488 91 1707 1798 20 96.000 23.3 1.450 50.000 2FUF 25306 24796 0 0 0.07 0.07 2.052 1 53.6 10.900 98.700 0.441 1.45 1.50 4.5 2416 2416 0.441 0.790 1 9.70 96.3 96.30 data reduction Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm DENZO package data scaling Zbyszek Otwinowski zbyszek@mix.swmed.edu http://www.lnls.br/infra/linhasluz/denzo-hkl.htm SCALEPACK package phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program phasing Tom Terwilliger terwilliger@LANL.gov 14-Sept-2004 http://www.solve.lanl.gov/ SOLVE program 2.08 phasing Terwilliger, T. C terwilliger@LANL.gov 14-Sept-2004 http://www.solve.lanl.gov/ RESOLVE program 2.08 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu Nov. 1, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.701 Crystal structure of the SV40 large T antigen origin-binding domain 1 N N 2 N N 3 N N The biological assembly is a hexamer generated from the monomer in the asymmetric unit by the operations:y,-x+y+1,z+1/6 and -x+y+1,-x+2,z+1/3 and -x+2,-y+2,z+1/2, and -y+2,x-y+1,z+2/3 and x-y+1,x,z+5/6 A PRO 139 A PRO 11 HELX_P A LEU 146 A LEU 18 5 1 8 A THR 164 A THR 36 HELX_P A TYR 179 A TYR 51 1 2 16 A ARG 204 A ARG 76 HELX_P A CYS 216 A CYS 88 1 3 13 A LYS 228 A LYS 100 HELX_P A THR 237 A THR 109 1 4 10 A GLY 250 A GLY 122 HELX_P A HIS 255 A HIS 127 1 5 6 covale 1.331 both A ILE 175 A C ILE 47 1_555 A MSE 176 A N MSE 48 1_555 covale 1.325 both A MSE 176 A C MSE 48 1_555 A GLU 177 A N GLU 49 1_555 covale 1.332 both A LEU 231 A C LEU 103 1_555 A MSE 232 A N MSE 104 1_555 covale 1.331 both A MSE 232 A C MSE 104 1_555 A TYR 233 A N TYR 105 1_555 DNA BINDING PROTEIN Replication origin binding domain, dna replication, DNA BINDING PROTEIN A ASP 239 A ASP 111 1 A PRO 240 A PRO 112 6.92 A ASP 239 A ASP 111 1 A PRO 240 A PRO 112 4.75 TALA_SV40 UNP 1 131 P03070 131 260 2FUF 131 259 P03070 A 1 3 131 1 cloning artifact GLY 129 2FUF A P03070 UNP 1 1 cloning artifact SER 130 2FUF A P03070 UNP 2 1 MET modified residue MSE 176 2FUF A P03070 UNP 176 48 1 MET modified residue MSE 232 2FUF A P03070 UNP 232 104 1 cloning artifact SER 261 2FUF A P03070 UNP 133 1 cloning artifact SER 262 2FUF A P03070 UNP 134 5 anti-parallel anti-parallel anti-parallel anti-parallel A LEU 221 A LEU 93 A GLY 225 A GLY 97 A LEU 156 A LEU 28 A THR 163 A THR 35 A HIS 192 A HIS 64 A HIS 203 A HIS 75 A PHE 183 A PHE 55 A SER 189 A SER 61 A SER 242 A SER 114 A GLU 246 A GLU 118 BINDING SITE FOR RESIDUE FLC A 263 A FLC 263 Software 9 A THR 164 A THR 36 9 1_555 A LYS 165 A LYS 37 9 1_555 A ASN 191 A ASN 63 9 1_555 A HIS 192 A HIS 64 9 1_555 A ARG 238 A ARG 110 9 4_674 A HOH 281 C HOH 9 1_555 A HOH 305 C HOH 9 1_555 A HOH 334 C HOH 9 4_674 A HOH 391 C HOH 9 1_555 170 P 65