0.0171
0.0000
0.0000
0.0000
0.0150
0.0000
0.0000
0.0000
0.0091
0.0000
0.0000
0.0000
Gulick, A.M.
Duax, W.L.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.000
90.000
90.000
58.585
66.643
109.732
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
N
N
251
S
C
N
252
N
C
N
253
N
O
N
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
N
261
N
O
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
N
N
274
S
C
N
275
N
C
N
276
N
O
N
277
N
C
N
278
N
C
N
279
N
C
N
280
N
O
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
N
C
N
295
N
O
N
296
N
O
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
N
N
305
S
C
N
306
N
C
N
307
N
O
N
308
R
C
N
309
N
O
N
310
N
C
N
311
N
O
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
N
N
322
S
C
N
323
N
C
N
324
N
O
N
325
N
C
Y
326
N
C
Y
327
N
C
Y
328
N
C
Y
329
N
N
Y
330
N
C
Y
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
N
335
N
O
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
N
N
349
S
C
N
350
N
C
N
351
N
O
N
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
Y
357
N
C
Y
358
N
C
N
359
N
O
N
360
N
O
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
N
N
373
S
C
N
374
N
C
N
375
N
O
N
376
N
C
N
377
N
C
N
378
N
C
N
379
N
O
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
doub
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
doub
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
doub
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
Y
317
N
doub
Y
318
N
sing
Y
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
doub
N
329
N
sing
Y
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
doub
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
Y
345
N
doub
Y
346
N
sing
Y
347
N
sing
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
doub
N
352
N
sing
Y
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
doub
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
62
734
740
10.1107/S0907444906015824
16790929
Determination of the crystal structure of EntA, a 2,3-dihydro-2,3-dihydroxybenzoic acid dehydrogenase from Escherichia coli.
2006
10.2210/pdb2fwm/pdb
pdb_00002fwm
113.0
1
CCD
2005-08-02
ADSC QUANTUM 4
MAD
M
x-ray
1
0.97930
1.0
F2
CHESS
0.97930
SYNCHROTRON
CHESS BEAMLINE F2
26466.781
2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase
1.3.1.28
1
man
polymer
18.015
water
109
nat
water
no
no
GHMDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN
AAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSV
GLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDI
VVDGGSTLGA
GHMDFSGKNVWVTGAGKGIGYATALAFVEAGAKVTGFDQAFTQEQYPFATEVMDVADAAQVAQVCQRLLAETERLDALVN
AAGILRMGATDQLSKEDWQQTFAVNVGGAFNLFQQTMNQFRRQRGGAIVTVASDAAHTPRIGMSAYGASKAALKSLALSV
GLELAGSGVRCNVVSPGSTDTDMQRTLWVSDDAEEQRIRGFGEQFKLGIPLGKIARPQEIANTILFLASDLASHITLQDI
VVDGGSTLGA
X
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
JM109
Escherichia
Escherichia coli
sample
entA
562
Escherichia coli
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pET15b-TEV
1
2.02
39.20
5.00
2% PEG4000, 2% ethylene glycol, 300 mM AmSO4, 50 mM NaSuccinate, VAPOR DIFFUSION, HANGING DROP, temperature 277K, pH 5.00
277
software
chem_comp_atom
chem_comp_bond
database_2
repository
Initial release
Version format compliance
Derived calculations
Version format compliance
Structure summary
Refinement description
Data collection
Database references
1
0
2006-06-27
1
1
2008-05-01
1
2
2011-07-13
1
3
2014-11-12
1
4
2017-10-18
1
5
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
SEQUENCE
After removal of the tag with TEV protease, a Gly-His
sequence remains upstream of Met at position 1
RCSB
Y
RCSB
2006-02-02
REL
REL
HOH
water
HOH
1
2
HOH
HOH
249
X
HOH
2
2
HOH
HOH
250
X
HOH
3
2
HOH
HOH
251
X
HOH
4
2
HOH
HOH
252
X
HOH
5
2
HOH
HOH
253
X
HOH
6
2
HOH
HOH
254
X
HOH
7
2
HOH
HOH
255
X
HOH
8
2
HOH
HOH
256
X
HOH
9
2
HOH
HOH
257
X
HOH
10
2
HOH
HOH
258
X
HOH
11
2
HOH
HOH
259
X
HOH
12
2
HOH
HOH
260
X
HOH
13
2
HOH
HOH
261
X
HOH
14
2
HOH
HOH
262
X
HOH
15
2
HOH
HOH
263
X
HOH
16
2
HOH
HOH
264
X
HOH
18
2
HOH
HOH
265
X
HOH
19
2
HOH
HOH
266
X
HOH
20
2
HOH
HOH
267
X
HOH
21
2
HOH
HOH
268
X
HOH
22
2
HOH
HOH
269
X
HOH
23
2
HOH
HOH
270
X
HOH
24
2
HOH
HOH
271
X
HOH
25
2
HOH
HOH
272
X
HOH
26
2
HOH
HOH
273
X
HOH
27
2
HOH
HOH
274
X
HOH
28
2
HOH
HOH
275
X
HOH
29
2
HOH
HOH
276
X
HOH
30
2
HOH
HOH
277
X
HOH
31
2
HOH
HOH
278
X
HOH
32
2
HOH
HOH
279
X
HOH
33
2
HOH
HOH
280
X
HOH
34
2
HOH
HOH
281
X
HOH
35
2
HOH
HOH
282
X
HOH
36
2
HOH
HOH
283
X
HOH
37
2
HOH
HOH
284
X
HOH
38
2
HOH
HOH
285
X
HOH
39
2
HOH
HOH
286
X
HOH
40
2
HOH
HOH
287
X
HOH
41
2
HOH
HOH
288
X
HOH
42
2
HOH
HOH
289
X
HOH
43
2
HOH
HOH
290
X
HOH
44
2
HOH
HOH
291
X
HOH
45
2
HOH
HOH
292
X
HOH
46
2
HOH
HOH
293
X
HOH
47
2
HOH
HOH
294
X
HOH
48
2
HOH
HOH
295
X
HOH
49
2
HOH
HOH
296
X
HOH
50
2
HOH
HOH
297
X
HOH
51
2
HOH
HOH
298
X
HOH
52
2
HOH
HOH
299
X
HOH
53
2
HOH
HOH
300
X
HOH
54
2
HOH
HOH
301
X
HOH
55
2
HOH
HOH
302
X
HOH
56
2
HOH
HOH
303
X
HOH
57
2
HOH
HOH
304
X
HOH
58
2
HOH
HOH
305
X
HOH
59
2
HOH
HOH
306
X
HOH
60
2
HOH
HOH
307
X
HOH
61
2
HOH
HOH
308
X
HOH
62
2
HOH
HOH
309
X
HOH
63
2
HOH
HOH
310
X
HOH
64
2
HOH
HOH
311
X
HOH
65
2
HOH
HOH
312
X
HOH
66
2
HOH
HOH
313
X
HOH
67
2
HOH
HOH
314
X
HOH
68
2
HOH
HOH
315
X
HOH
69
2
HOH
HOH
316
X
HOH
70
2
HOH
HOH
317
X
HOH
71
2
HOH
HOH
318
X
HOH
72
2
HOH
HOH
319
X
HOH
73
2
HOH
HOH
320
X
HOH
74
2
HOH
HOH
321
X
HOH
75
2
HOH
HOH
322
X
HOH
76
2
HOH
HOH
323
X
HOH
77
2
HOH
HOH
324
X
HOH
78
2
HOH
HOH
325
X
HOH
79
2
HOH
HOH
326
X
HOH
80
2
HOH
HOH
327
X
HOH
81
2
HOH
HOH
328
X
HOH
82
2
HOH
HOH
329
X
HOH
83
2
HOH
HOH
330
X
HOH
84
2
HOH
HOH
331
X
HOH
85
2
HOH
HOH
332
X
HOH
86
2
HOH
HOH
333
X
HOH
87
2
HOH
HOH
334
X
HOH
88
2
HOH
HOH
335
X
HOH
89
2
HOH
HOH
336
X
HOH
90
2
HOH
HOH
337
X
HOH
91
2
HOH
HOH
338
X
HOH
92
2
HOH
HOH
339
X
HOH
93
2
HOH
HOH
340
X
HOH
94
2
HOH
HOH
341
X
HOH
95
2
HOH
HOH
342
X
HOH
96
2
HOH
HOH
343
X
HOH
97
2
HOH
HOH
344
X
HOH
98
2
HOH
HOH
345
X
HOH
99
2
HOH
HOH
346
X
HOH
100
2
HOH
HOH
347
X
HOH
101
2
HOH
HOH
348
X
HOH
102
2
HOH
HOH
349
X
HOH
103
2
HOH
HOH
350
X
HOH
104
2
HOH
HOH
351
X
HOH
105
2
HOH
HOH
352
X
HOH
106
2
HOH
HOH
353
X
HOH
107
2
HOH
HOH
354
X
HOH
108
2
HOH
HOH
355
X
HOH
109
2
HOH
HOH
356
X
HOH
110
2
HOH
HOH
357
X
0.86
0.86
0.83
14387
12756
1631
0.96
0.96
0.91
691
497
194
0.95
0.97
0.89
1996
1679
317
0.93
0.94
0.86
2474
2172
302
0.87
0.88
0.78
2427
2189
238
0.83
0.83
0.81
4215
3848
367
0.73
0.73
0.70
2584
2371
213
n
1
-1
X
n
2
0
X
MET
1
n
3
MET
1
X
ASP
2
n
4
ASP
2
X
PHE
3
n
5
PHE
3
X
SER
4
n
6
SER
4
X
GLY
5
n
7
GLY
5
X
LYS
6
n
8
LYS
6
X
ASN
7
n
9
ASN
7
X
VAL
8
n
10
VAL
8
X
TRP
9
n
11
TRP
9
X
VAL
10
n
12
VAL
10
X
THR
11
n
13
THR
11
X
GLY
12
n
14
GLY
12
X
ALA
13
n
15
ALA
13
X
GLY
14
n
16
GLY
14
X
LYS
15
n
17
LYS
15
X
GLY
16
n
18
GLY
16
X
ILE
17
n
19
ILE
17
X
GLY
18
n
20
GLY
18
X
TYR
19
n
21
TYR
19
X
ALA
20
n
22
ALA
20
X
THR
21
n
23
THR
21
X
ALA
22
n
24
ALA
22
X
LEU
23
n
25
LEU
23
X
ALA
24
n
26
ALA
24
X
PHE
25
n
27
PHE
25
X
VAL
26
n
28
VAL
26
X
GLU
27
n
29
GLU
27
X
ALA
28
n
30
ALA
28
X
GLY
29
n
31
GLY
29
X
ALA
30
n
32
ALA
30
X
LYS
31
n
33
LYS
31
X
VAL
32
n
34
VAL
32
X
THR
33
n
35
THR
33
X
GLY
34
n
36
GLY
34
X
PHE
35
n
37
PHE
35
X
ASP
36
n
38
ASP
36
X
GLN
37
n
39
GLN
37
X
ALA
38
n
40
ALA
38
X
PHE
39
n
41
PHE
39
X
THR
40
n
42
THR
40
X
GLN
41
n
43
GLN
41
X
GLU
42
n
44
GLU
42
X
GLN
43
n
45
GLN
43
X
TYR
44
n
46
TYR
44
X
PRO
45
n
47
PRO
45
X
PHE
46
n
48
PHE
46
X
ALA
47
n
49
ALA
47
X
THR
48
n
50
THR
48
X
GLU
49
n
51
GLU
49
X
VAL
50
n
52
VAL
50
X
MET
51
n
53
MET
51
X
ASP
52
n
54
ASP
52
X
VAL
53
n
55
VAL
53
X
ALA
54
n
56
ALA
54
X
ASP
55
n
57
ASP
55
X
ALA
56
n
58
ALA
56
X
ALA
57
n
59
ALA
57
X
GLN
58
n
60
GLN
58
X
VAL
59
n
61
VAL
59
X
ALA
60
n
62
ALA
60
X
GLN
61
n
63
GLN
61
X
VAL
62
n
64
VAL
62
X
CYS
63
n
65
CYS
63
X
GLN
64
n
66
GLN
64
X
ARG
65
n
67
ARG
65
X
LEU
66
n
68
LEU
66
X
LEU
67
n
69
LEU
67
X
ALA
68
n
70
ALA
68
X
GLU
69
n
71
GLU
69
X
THR
70
n
72
THR
70
X
GLU
71
n
73
GLU
71
X
ARG
72
n
74
ARG
72
X
LEU
73
n
75
LEU
73
X
ASP
74
n
76
ASP
74
X
ALA
75
n
77
ALA
75
X
LEU
76
n
78
LEU
76
X
VAL
77
n
79
VAL
77
X
ASN
78
n
80
ASN
78
X
ALA
79
n
81
ALA
79
X
ALA
80
n
82
ALA
80
X
GLY
81
n
83
GLY
81
X
ILE
82
n
84
ILE
82
X
LEU
83
n
85
LEU
83
X
ARG
84
n
86
ARG
84
X
MET
85
n
87
MET
85
X
GLY
86
n
88
GLY
86
X
ALA
87
n
89
ALA
87
X
THR
88
n
90
THR
88
X
ASP
89
n
91
ASP
89
X
GLN
90
n
92
GLN
90
X
LEU
91
n
93
LEU
91
X
SER
92
n
94
SER
92
X
LYS
93
n
95
LYS
93
X
GLU
94
n
96
GLU
94
X
ASP
95
n
97
ASP
95
X
TRP
96
n
98
TRP
96
X
GLN
97
n
99
GLN
97
X
GLN
98
n
100
GLN
98
X
THR
99
n
101
THR
99
X
PHE
100
n
102
PHE
100
X
ALA
101
n
103
ALA
101
X
VAL
102
n
104
VAL
102
X
ASN
103
n
105
ASN
103
X
VAL
104
n
106
VAL
104
X
GLY
105
n
107
GLY
105
X
GLY
106
n
108
GLY
106
X
ALA
107
n
109
ALA
107
X
PHE
108
n
110
PHE
108
X
ASN
109
n
111
ASN
109
X
LEU
110
n
112
LEU
110
X
PHE
111
n
113
PHE
111
X
GLN
112
n
114
GLN
112
X
GLN
113
n
115
GLN
113
X
THR
114
n
116
THR
114
X
MET
115
n
117
MET
115
X
ASN
116
n
118
ASN
116
X
GLN
117
n
119
GLN
117
X
PHE
118
n
120
PHE
118
X
ARG
119
n
121
ARG
119
X
ARG
120
n
122
ARG
120
X
GLN
121
n
123
GLN
121
X
ARG
122
n
124
ARG
122
X
GLY
123
n
125
GLY
123
X
GLY
124
n
126
GLY
124
X
ALA
125
n
127
ALA
125
X
ILE
126
n
128
ILE
126
X
VAL
127
n
129
VAL
127
X
THR
128
n
130
THR
128
X
VAL
129
n
131
VAL
129
X
ALA
130
n
132
ALA
130
X
SER
131
n
133
SER
131
X
ASP
132
n
134
ASP
132
X
ALA
133
n
135
ALA
133
X
ALA
134
n
136
ALA
134
X
HIS
135
n
137
HIS
135
X
THR
136
n
138
THR
136
X
PRO
137
n
139
PRO
137
X
ARG
138
n
140
ARG
138
X
ILE
139
n
141
ILE
139
X
GLY
140
n
142
GLY
140
X
MET
141
n
143
MET
141
X
SER
142
n
144
SER
142
X
ALA
143
n
145
ALA
143
X
TYR
144
n
146
TYR
144
X
GLY
145
n
147
GLY
145
X
ALA
146
n
148
ALA
146
X
SER
147
n
149
SER
147
X
LYS
148
n
150
LYS
148
X
ALA
149
n
151
ALA
149
X
ALA
150
n
152
ALA
150
X
LEU
151
n
153
LEU
151
X
LYS
152
n
154
LYS
152
X
SER
153
n
155
SER
153
X
LEU
154
n
156
LEU
154
X
ALA
155
n
157
ALA
155
X
LEU
156
n
158
LEU
156
X
SER
157
n
159
SER
157
X
VAL
158
n
160
VAL
158
X
GLY
159
n
161
GLY
159
X
LEU
160
n
162
LEU
160
X
GLU
161
n
163
GLU
161
X
LEU
162
n
164
LEU
162
X
ALA
163
n
165
ALA
163
X
GLY
164
n
166
GLY
164
X
SER
165
n
167
SER
165
X
GLY
166
n
168
GLY
166
X
VAL
167
n
169
VAL
167
X
ARG
168
n
170
ARG
168
X
CYS
169
n
171
CYS
169
X
ASN
170
n
172
ASN
170
X
VAL
171
n
173
VAL
171
X
VAL
172
n
174
VAL
172
X
SER
173
n
175
SER
173
X
PRO
174
n
176
PRO
174
X
GLY
175
n
177
GLY
175
X
SER
176
n
178
SER
176
X
THR
177
n
179
THR
177
X
n
180
178
X
n
181
179
X
n
182
180
X
n
183
181
X
n
184
182
X
n
185
183
X
n
186
184
X
n
187
185
X
n
188
186
X
n
189
187
X
n
190
188
X
n
191
189
X
n
192
190
X
n
193
191
X
n
194
192
X
n
195
193
X
n
196
194
X
n
197
195
X
n
198
196
X
n
199
197
X
n
200
198
X
n
201
199
X
n
202
200
X
n
203
201
X
n
204
202
X
n
205
203
X
n
206
204
X
n
207
205
X
n
208
206
X
n
209
207
X
n
210
208
X
n
211
209
X
n
212
210
X
n
213
211
X
n
214
212
X
n
215
213
X
ARG
214
n
216
ARG
214
X
PRO
215
n
217
PRO
215
X
GLN
216
n
218
GLN
216
X
GLU
217
n
219
GLU
217
X
ILE
218
n
220
ILE
218
X
ALA
219
n
221
ALA
219
X
ASN
220
n
222
ASN
220
X
THR
221
n
223
THR
221
X
ILE
222
n
224
ILE
222
X
LEU
223
n
225
LEU
223
X
PHE
224
n
226
PHE
224
X
LEU
225
n
227
LEU
225
X
ALA
226
n
228
ALA
226
X
SER
227
n
229
SER
227
X
ASP
228
n
230
ASP
228
X
LEU
229
n
231
LEU
229
X
ALA
230
n
232
ALA
230
X
SER
231
n
233
SER
231
X
HIS
232
n
234
HIS
232
X
ILE
233
n
235
ILE
233
X
THR
234
n
236
THR
234
X
LEU
235
n
237
LEU
235
X
GLN
236
n
238
GLN
236
X
ASP
237
n
239
ASP
237
X
ILE
238
n
240
ILE
238
X
VAL
239
n
241
VAL
239
X
VAL
240
n
242
VAL
240
X
ASP
241
n
243
ASP
241
X
GLY
242
n
244
GLY
242
X
GLY
243
n
245
GLY
243
X
SER
244
n
246
SER
244
X
THR
245
n
247
THR
245
X
LEU
246
n
248
LEU
246
X
GLY
247
n
249
GLY
247
X
ALA
248
n
250
ALA
248
X
author_and_software_defined_assembly
PISA,PQS
4
tetrameric
9990
-76
29890
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
2_665
-x+1,-y+1,z
crystal symmetry operation
58.5850000000
66.6430000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
3_656
-x+1,y,-z+1
crystal symmetry operation
58.5850000000
0.0000000000
109.7320000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
4_566
x,-y+1,-z+1
crystal symmetry operation
0.0000000000
66.6430000000
109.7320000000
X
O
ALA
47
A
O
ALA
49
X
N
GLY
34
A
N
GLY
36
X
O
PHE
35
A
O
PHE
37
X
N
VAL
10
A
N
VAL
12
X
N
TRP
9
A
N
TRP
11
X
O
ALA
75
A
O
ALA
77
X
N
ASN
78
A
N
ASN
80
X
O
VAL
129
A
O
VAL
131
X
N
ILE
126
A
N
ILE
128
X
O
ARG
168
A
O
ARG
170
X
N
SER
173
A
N
SER
175
X
O
ILE
238
A
O
ILE
240
1
X
CG
LYS
15
A
CG
LYS
17
1
Y
1
X
CD
LYS
15
A
CD
LYS
17
1
Y
1
X
CE
LYS
15
A
CE
LYS
17
1
Y
1
X
NZ
LYS
15
A
NZ
LYS
17
1
Y
1
X
CG
GLU
42
A
CG
GLU
44
1
Y
1
X
CD
GLU
42
A
CD
GLU
44
1
Y
1
X
OE1
GLU
42
A
OE1
GLU
44
1
Y
1
X
OE2
GLU
42
A
OE2
GLU
44
1
Y
1
X
OG1
THR
177
A
OG1
THR
179
1
Y
1
X
CG2
THR
177
A
CG2
THR
179
1
Y
1
X
CG
GLU
217
A
CG
GLU
219
1
Y
1
X
CD
GLU
217
A
CD
GLU
219
1
Y
1
X
OE1
GLU
217
A
OE1
GLU
219
1
Y
1
X
OE2
GLU
217
A
OE2
GLU
219
1
Y
1
X
GLY
-1
A
GLY
1
1
Y
1
X
HIS
0
A
HIS
2
1
Y
1
X
ASP
178
A
ASP
180
1
Y
1
X
THR
179
A
THR
181
1
Y
1
X
ASP
180
A
ASP
182
1
Y
1
X
MET
181
A
MET
183
1
Y
1
X
GLN
182
A
GLN
184
1
Y
1
X
ARG
183
A
ARG
185
1
Y
1
X
THR
184
A
THR
186
1
Y
1
X
LEU
185
A
LEU
187
1
Y
1
X
TRP
186
A
TRP
188
1
Y
1
X
VAL
187
A
VAL
189
1
Y
1
X
SER
188
A
SER
190
1
Y
1
X
ASP
189
A
ASP
191
1
Y
1
X
ASP
190
A
ASP
192
1
Y
1
X
ALA
191
A
ALA
193
1
Y
1
X
GLU
192
A
GLU
194
1
Y
1
X
GLU
193
A
GLU
195
1
Y
1
X
GLN
194
A
GLN
196
1
Y
1
X
ARG
195
A
ARG
197
1
Y
1
X
ILE
196
A
ILE
198
1
Y
1
X
ARG
197
A
ARG
199
1
Y
1
X
GLY
198
A
GLY
200
1
Y
1
X
PHE
199
A
PHE
201
1
Y
1
X
GLY
200
A
GLY
202
1
Y
1
X
GLU
201
A
GLU
203
1
Y
1
X
GLN
202
A
GLN
204
1
Y
1
X
PHE
203
A
PHE
205
1
Y
1
X
LYS
204
A
LYS
206
1
Y
1
X
LEU
205
A
LEU
207
1
Y
1
X
GLY
206
A
GLY
208
1
Y
1
X
ILE
207
A
ILE
209
1
Y
1
X
PRO
208
A
PRO
210
1
Y
1
X
LEU
209
A
LEU
211
1
Y
1
X
GLY
210
A
GLY
212
1
Y
1
X
LYS
211
A
LYS
213
1
Y
1
X
ILE
212
A
ILE
214
1
Y
1
X
ALA
213
A
ALA
215
1
Y
1
X
ASP
2
71.31
76.81
1
X
MET
51
-162.62
108.74
1
X
ALA
130
-98.69
-123.18
1
X
ASP
241
-149.45
23.40
21.48
0.90000
0.00000
0.00000
-0.10000
0.00000
-0.81000
0.946
0.935
0.214
0.186
2.00
40.00
706
14902
14333
4.900
96.2
3.454
0.098
RANDOM
1
THROUGHOUT
0.000
MAD
0.154
0.800
0.800
1.200
Engh & Huber
MASK
2.00
40.00
109
1651
0
0
1542
1569
0.008
0.022
2129
1.082
1.937
210
4.654
5.000
66
35.930
24.697
241
15.119
15.000
9
20.878
15.000
251
0.081
0.200
1191
0.003
0.020
709
0.192
0.200
1087
0.301
0.200
115
0.133
0.200
58
0.153
0.200
15
0.153
0.200
1072
0.917
2.000
1648
1.520
3.000
560
0.886
2.000
481
1.438
3.000
0.184
0.188
2.052
41
727
20
71.840
2.000
50.000
2FWM
14485
0.000
0.059
1
4.300
95.4
0.298
2.00
2.07
1
3.00
70.0
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
Weeks, C.M
bnp-help@hwi.buffalo.edu
http://www.hwi.buffalo.edu/BnP/
SnB
package
phasing
Terwilliger, T. C
terwilliger@LANL.gov
25-Apr-2005
http://www.solve.lanl.gov/
RESOLVE
program
2.09
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
H.Yang
sw-help@rcsb.rutgers.edu
March 3, 2004
C/C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
program
1.401
data reduction
HKL-2000
data scaling
HKL-2000
Crystal Structure of E. coli EntA, a 2,3-dihydrodihydroxy benzoate dehydrogenase
1
N
N
2
N
N
Tetramer formed around crystallographic 222 symmetry
X
LYS
15
A
LYS
17
HELX_P
X
ALA
28
A
ALA
30
1
1
14
X
ASP
55
A
ASP
57
HELX_P
X
THR
70
A
THR
72
1
2
16
X
SER
92
A
SER
94
HELX_P
X
VAL
104
A
VAL
106
1
3
13
X
VAL
104
A
VAL
106
HELX_P
X
ARG
122
A
ARG
124
1
4
19
X
SER
131
A
SER
133
HELX_P
X
HIS
135
A
HIS
137
5
5
5
X
MET
141
A
MET
143
HELX_P
X
ALA
163
A
ALA
165
1
6
23
X
GLY
164
A
GLY
166
HELX_P
X
GLY
166
A
GLY
168
5
7
3
X
ARG
214
A
ARG
216
HELX_P
X
SER
227
A
SER
229
1
8
14
X
ASP
228
A
ASP
230
HELX_P
X
SER
231
A
SER
233
5
9
4
OXIDOREDUCTASE
enterobactin, Rossmann Fold, chorismate metabolism, short-chain oxidoreductase, tetramer, OXIDOREDUCTASE
ENTA_ECOLI
UNP
1
1
P15047
1
248
2FWM
1
248
P15047
X
1
3
250
1
SEE REMARK 999
GLY
-1
2FWM
X
P15047
UNP
1
1
SEE REMARK 999
HIS
0
2FWM
X
P15047
UNP
2
7
parallel
parallel
parallel
parallel
parallel
parallel
X
ALA
47
A
ALA
49
X
VAL
50
A
VAL
52
X
LYS
31
A
LYS
33
X
ASP
36
A
ASP
38
X
ASN
7
A
ASN
9
X
THR
11
A
THR
13
X
ALA
75
A
ALA
77
X
ASN
78
A
ASN
80
X
ALA
125
A
ALA
127
X
VAL
129
A
VAL
131
X
ARG
168
A
ARG
170
X
PRO
174
A
PRO
176
X
ASP
237
A
ASP
239
X
VAL
240
A
VAL
242
23
I 2 2 2