0.008208
0.004739
0.000000
0.000000
0.009478
0.000000
0.000000
0.000000
0.019467
0.00000
0.00000
0.00000
Zeitler, C.E.
Estes, M.K.
Venkataram Prasad, B.V.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
121.833
121.833
51.369
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
O4 P -3
94.971
PHOSPHATE ION
non-polymer
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
CL
N
75
N
N
N
76
R
C
N
77
N
C
N
78
N
O
N
79
N
C
N
80
N
S
N
81
N
O
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
N
N
90
S
C
N
91
N
C
N
92
N
O
N
93
N
C
N
94
N
C
N
95
N
C
N
96
N
O
N
97
N
N
N
98
N
O
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
N
N
110
S
C
N
111
N
C
N
112
N
O
N
113
N
C
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
O
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
H
N
128
N
N
N
129
N
C
N
130
N
C
N
131
N
O
N
132
N
O
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
N
N
139
S
C
N
140
N
C
N
141
N
O
N
142
N
C
Y
143
N
C
Y
144
N
N
Y
145
N
C
Y
146
N
C
Y
147
N
N
N
148
N
O
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
O
N
160
N
H
N
161
N
H
N
162
N
N
N
163
S
C
N
164
N
C
N
165
N
O
N
166
S
C
N
167
N
C
N
168
N
C
N
169
N
C
N
170
N
O
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
N
N
185
S
C
N
186
N
C
N
187
N
O
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
C
N
192
N
O
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
N
N
207
S
C
N
208
N
C
N
209
N
O
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
C
N
214
N
N
N
215
N
O
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
N
N
232
S
C
N
233
N
C
N
234
N
O
N
235
N
C
N
236
N
C
N
237
N
S
N
238
N
C
N
239
N
O
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
N
N
252
S
C
N
253
N
C
N
254
N
O
N
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
Y
259
N
C
Y
260
N
C
Y
261
N
C
N
262
N
O
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
P
N
275
N
O
N
276
N
O
N
277
N
O
N
278
N
O
N
279
N
N
N
280
S
C
N
281
N
C
N
282
N
O
N
283
N
C
N
284
N
C
N
285
N
C
N
286
N
O
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
H
N
296
N
N
N
297
S
C
N
298
N
C
N
299
N
O
N
300
N
C
N
301
N
O
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
N
N
311
S
C
N
312
N
C
N
313
N
O
N
314
R
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
H
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
N
N
328
S
C
N
329
N
C
N
330
N
O
N
331
N
C
Y
332
N
C
Y
333
N
C
Y
334
N
C
Y
335
N
N
Y
336
N
C
Y
337
N
C
Y
338
N
C
Y
339
N
C
Y
340
N
C
N
341
N
O
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
N
N
355
S
C
N
356
N
C
N
357
N
O
N
358
N
C
Y
359
N
C
Y
360
N
C
Y
361
N
C
Y
362
N
C
Y
363
N
C
Y
364
N
C
N
365
N
O
N
366
N
O
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
377
N
H
N
378
N
N
N
379
S
C
N
380
N
C
N
381
N
O
N
382
N
C
N
383
N
C
N
384
N
C
N
385
N
O
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
H
N
395
N
H
N
396
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
doub
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
Y
248
N
doub
Y
249
N
sing
Y
250
N
sing
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
doub
N
255
N
sing
Y
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
doub
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
doub
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
doub
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
Y
321
N
doub
Y
322
N
sing
Y
323
N
sing
N
324
N
sing
Y
325
N
doub
Y
326
N
sing
Y
327
N
sing
N
328
N
sing
Y
329
N
sing
Y
330
N
doub
N
331
N
sing
Y
332
N
doub
N
333
N
sing
Y
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
sing
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
doub
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
Y
349
N
doub
Y
350
N
sing
Y
351
N
sing
N
352
N
sing
Y
353
N
doub
N
354
N
sing
Y
355
N
doub
N
356
N
sing
Y
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
doub
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
N
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
US
J.Virol.
JOVIAM
0825
0022-538X
80
5050
5058
10.1128/JVI.80.10.5050-5058.2006
16641296
X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution.
2006
10.2210/pdb2fyq/pdb
pdb_00002fyq
93.0
1
CCD
ADSC QUANTUM 4
SINGLE WAVELENGTH
M
x-ray
1
0.9794
1.0
19-ID
APS
0.9794
0.9794
SYNCHROTRON
APS BEAMLINE 19-ID
20786.738
Chymotrypsin-like cysteine proteinase
1
man
polymer
35.453
CHLORIDE ION
2
syn
non-polymer
94.971
PHOSPHATE ION
1
syn
non-polymer
18.015
water
293
nat
water
no
no
MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD
LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR
GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE
MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD
LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR
GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Norovirus
Escherichia
Escherichia coli
sample
11983
Norwalk virus
469008
Escherichia coli BL21(DE3)
BL-21(DE3)
PLASMID
PET46 EK-LIC
1
2.87
57.14
5.50
0.1M lithium sulfate, 0.1M bis-tris, 0.1M EDTA, 20% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 5.50
298
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2006-07-25
1
1
2008-04-01
1
2
2011-07-13
1
3
2024-02-14
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-02-08
REL
REL
CL
CHLORIDE ION
PO4
PHOSPHATE ION
HOH
water
CL
401
2
CL
CL
401
A
PO4
403
3
PO4
PO4
403
A
CL
402
2
CL
CL
402
A
HOH
1
4
HOH
HOH
404
A
HOH
2
4
HOH
HOH
405
A
HOH
3
4
HOH
HOH
406
A
HOH
4
4
HOH
HOH
407
A
HOH
5
4
HOH
HOH
408
A
HOH
6
4
HOH
HOH
409
A
HOH
7
4
HOH
HOH
410
A
HOH
8
4
HOH
HOH
411
A
HOH
9
4
HOH
HOH
412
A
HOH
10
4
HOH
HOH
413
A
HOH
11
4
HOH
HOH
414
A
HOH
12
4
HOH
HOH
415
A
HOH
13
4
HOH
HOH
416
A
HOH
14
4
HOH
HOH
417
A
HOH
15
4
HOH
HOH
418
A
HOH
16
4
HOH
HOH
419
A
HOH
17
4
HOH
HOH
420
A
HOH
18
4
HOH
HOH
421
A
HOH
19
4
HOH
HOH
422
A
HOH
20
4
HOH
HOH
423
A
HOH
21
4
HOH
HOH
424
A
HOH
22
4
HOH
HOH
425
A
HOH
23
4
HOH
HOH
426
A
HOH
25
4
HOH
HOH
427
A
HOH
26
4
HOH
HOH
428
A
HOH
27
4
HOH
HOH
429
A
HOH
28
4
HOH
HOH
430
A
HOH
29
4
HOH
HOH
431
A
HOH
30
4
HOH
HOH
432
A
HOH
31
4
HOH
HOH
433
A
HOH
32
4
HOH
HOH
434
A
HOH
33
4
HOH
HOH
435
A
HOH
34
4
HOH
HOH
436
A
HOH
35
4
HOH
HOH
437
A
HOH
36
4
HOH
HOH
438
A
HOH
37
4
HOH
HOH
439
A
HOH
38
4
HOH
HOH
440
A
HOH
39
4
HOH
HOH
441
A
HOH
40
4
HOH
HOH
442
A
HOH
41
4
HOH
HOH
443
A
HOH
42
4
HOH
HOH
444
A
HOH
43
4
HOH
HOH
445
A
HOH
44
4
HOH
HOH
446
A
HOH
45
4
HOH
HOH
447
A
HOH
46
4
HOH
HOH
448
A
HOH
47
4
HOH
HOH
449
A
HOH
48
4
HOH
HOH
450
A
HOH
49
4
HOH
HOH
451
A
HOH
50
4
HOH
HOH
452
A
HOH
51
4
HOH
HOH
453
A
HOH
52
4
HOH
HOH
454
A
HOH
53
4
HOH
HOH
455
A
HOH
54
4
HOH
HOH
456
A
HOH
55
4
HOH
HOH
457
A
HOH
56
4
HOH
HOH
458
A
HOH
57
4
HOH
HOH
459
A
HOH
58
4
HOH
HOH
460
A
HOH
59
4
HOH
HOH
461
A
HOH
60
4
HOH
HOH
462
A
HOH
61
4
HOH
HOH
463
A
HOH
62
4
HOH
HOH
464
A
HOH
63
4
HOH
HOH
465
A
HOH
64
4
HOH
HOH
466
A
HOH
65
4
HOH
HOH
467
A
HOH
66
4
HOH
HOH
468
A
HOH
67
4
HOH
HOH
469
A
HOH
68
4
HOH
HOH
470
A
HOH
69
4
HOH
HOH
471
A
HOH
70
4
HOH
HOH
472
A
HOH
71
4
HOH
HOH
473
A
HOH
72
4
HOH
HOH
474
A
HOH
73
4
HOH
HOH
475
A
HOH
74
4
HOH
HOH
476
A
HOH
75
4
HOH
HOH
477
A
HOH
76
4
HOH
HOH
478
A
HOH
77
4
HOH
HOH
479
A
HOH
78
4
HOH
HOH
480
A
HOH
79
4
HOH
HOH
481
A
HOH
80
4
HOH
HOH
482
A
HOH
81
4
HOH
HOH
483
A
HOH
82
4
HOH
HOH
484
A
HOH
83
4
HOH
HOH
485
A
HOH
84
4
HOH
HOH
486
A
HOH
85
4
HOH
HOH
487
A
HOH
86
4
HOH
HOH
488
A
HOH
87
4
HOH
HOH
489
A
HOH
88
4
HOH
HOH
490
A
HOH
89
4
HOH
HOH
491
A
HOH
90
4
HOH
HOH
492
A
HOH
91
4
HOH
HOH
493
A
HOH
92
4
HOH
HOH
494
A
HOH
93
4
HOH
HOH
495
A
HOH
94
4
HOH
HOH
496
A
HOH
95
4
HOH
HOH
497
A
HOH
96
4
HOH
HOH
498
A
HOH
97
4
HOH
HOH
499
A
HOH
98
4
HOH
HOH
500
A
HOH
99
4
HOH
HOH
501
A
HOH
100
4
HOH
HOH
502
A
HOH
101
4
HOH
HOH
503
A
HOH
102
4
HOH
HOH
504
A
HOH
103
4
HOH
HOH
505
A
HOH
104
4
HOH
HOH
506
A
HOH
105
4
HOH
HOH
507
A
HOH
106
4
HOH
HOH
508
A
HOH
107
4
HOH
HOH
509
A
HOH
108
4
HOH
HOH
510
A
HOH
109
4
HOH
HOH
511
A
HOH
110
4
HOH
HOH
512
A
HOH
111
4
HOH
HOH
513
A
HOH
112
4
HOH
HOH
514
A
HOH
113
4
HOH
HOH
515
A
HOH
114
4
HOH
HOH
516
A
HOH
115
4
HOH
HOH
517
A
HOH
116
4
HOH
HOH
518
A
HOH
117
4
HOH
HOH
519
A
HOH
118
4
HOH
HOH
520
A
HOH
119
4
HOH
HOH
521
A
HOH
120
4
HOH
HOH
522
A
HOH
121
4
HOH
HOH
523
A
HOH
122
4
HOH
HOH
524
A
HOH
123
4
HOH
HOH
525
A
HOH
124
4
HOH
HOH
526
A
HOH
125
4
HOH
HOH
527
A
HOH
126
4
HOH
HOH
528
A
HOH
127
4
HOH
HOH
529
A
HOH
128
4
HOH
HOH
530
A
HOH
129
4
HOH
HOH
531
A
HOH
130
4
HOH
HOH
532
A
HOH
131
4
HOH
HOH
533
A
HOH
132
4
HOH
HOH
534
A
HOH
133
4
HOH
HOH
535
A
HOH
134
4
HOH
HOH
536
A
HOH
135
4
HOH
HOH
537
A
HOH
136
4
HOH
HOH
538
A
HOH
137
4
HOH
HOH
539
A
HOH
138
4
HOH
HOH
540
A
HOH
140
4
HOH
HOH
541
A
HOH
141
4
HOH
HOH
542
A
HOH
142
4
HOH
HOH
543
A
HOH
143
4
HOH
HOH
544
A
HOH
144
4
HOH
HOH
545
A
HOH
145
4
HOH
HOH
546
A
HOH
146
4
HOH
HOH
547
A
HOH
147
4
HOH
HOH
548
A
HOH
148
4
HOH
HOH
549
A
HOH
149
4
HOH
HOH
550
A
HOH
150
4
HOH
HOH
551
A
HOH
151
4
HOH
HOH
552
A
HOH
152
4
HOH
HOH
553
A
HOH
153
4
HOH
HOH
554
A
HOH
154
4
HOH
HOH
555
A
HOH
155
4
HOH
HOH
556
A
HOH
156
4
HOH
HOH
557
A
HOH
157
4
HOH
HOH
558
A
HOH
158
4
HOH
HOH
559
A
HOH
159
4
HOH
HOH
560
A
HOH
160
4
HOH
HOH
561
A
HOH
161
4
HOH
HOH
562
A
HOH
162
4
HOH
HOH
563
A
HOH
163
4
HOH
HOH
564
A
HOH
165
4
HOH
HOH
565
A
HOH
166
4
HOH
HOH
566
A
HOH
167
4
HOH
HOH
567
A
HOH
168
4
HOH
HOH
568
A
HOH
171
4
HOH
HOH
569
A
HOH
172
4
HOH
HOH
570
A
HOH
173
4
HOH
HOH
571
A
HOH
174
4
HOH
HOH
572
A
HOH
175
4
HOH
HOH
573
A
HOH
176
4
HOH
HOH
574
A
HOH
177
4
HOH
HOH
575
A
HOH
178
4
HOH
HOH
576
A
HOH
179
4
HOH
HOH
577
A
HOH
180
4
HOH
HOH
578
A
HOH
181
4
HOH
HOH
579
A
HOH
182
4
HOH
HOH
580
A
HOH
183
4
HOH
HOH
581
A
HOH
184
4
HOH
HOH
582
A
HOH
185
4
HOH
HOH
583
A
HOH
186
4
HOH
HOH
584
A
HOH
187
4
HOH
HOH
585
A
HOH
188
4
HOH
HOH
586
A
HOH
189
4
HOH
HOH
587
A
HOH
190
4
HOH
HOH
588
A
HOH
191
4
HOH
HOH
589
A
HOH
192
4
HOH
HOH
590
A
HOH
193
4
HOH
HOH
591
A
HOH
194
4
HOH
HOH
592
A
HOH
195
4
HOH
HOH
593
A
HOH
196
4
HOH
HOH
594
A
HOH
197
4
HOH
HOH
595
A
HOH
198
4
HOH
HOH
596
A
HOH
199
4
HOH
HOH
597
A
HOH
200
4
HOH
HOH
598
A
HOH
201
4
HOH
HOH
599
A
HOH
202
4
HOH
HOH
600
A
HOH
203
4
HOH
HOH
601
A
HOH
204
4
HOH
HOH
602
A
HOH
205
4
HOH
HOH
603
A
HOH
206
4
HOH
HOH
604
A
HOH
207
4
HOH
HOH
605
A
HOH
208
4
HOH
HOH
606
A
HOH
209
4
HOH
HOH
607
A
HOH
210
4
HOH
HOH
608
A
HOH
211
4
HOH
HOH
609
A
HOH
212
4
HOH
HOH
610
A
HOH
213
4
HOH
HOH
611
A
HOH
214
4
HOH
HOH
612
A
HOH
215
4
HOH
HOH
613
A
HOH
216
4
HOH
HOH
614
A
HOH
217
4
HOH
HOH
615
A
HOH
218
4
HOH
HOH
616
A
HOH
219
4
HOH
HOH
617
A
HOH
221
4
HOH
HOH
618
A
HOH
222
4
HOH
HOH
619
A
HOH
223
4
HOH
HOH
620
A
HOH
224
4
HOH
HOH
621
A
HOH
225
4
HOH
HOH
622
A
HOH
226
4
HOH
HOH
623
A
HOH
227
4
HOH
HOH
624
A
HOH
228
4
HOH
HOH
625
A
HOH
229
4
HOH
HOH
626
A
HOH
230
4
HOH
HOH
627
A
HOH
231
4
HOH
HOH
628
A
HOH
232
4
HOH
HOH
629
A
HOH
233
4
HOH
HOH
630
A
HOH
234
4
HOH
HOH
631
A
HOH
235
4
HOH
HOH
632
A
HOH
236
4
HOH
HOH
633
A
HOH
237
4
HOH
HOH
634
A
HOH
238
4
HOH
HOH
635
A
HOH
239
4
HOH
HOH
636
A
HOH
240
4
HOH
HOH
637
A
HOH
241
4
HOH
HOH
638
A
HOH
242
4
HOH
HOH
639
A
HOH
244
4
HOH
HOH
640
A
HOH
245
4
HOH
HOH
641
A
HOH
246
4
HOH
HOH
642
A
HOH
247
4
HOH
HOH
643
A
HOH
248
4
HOH
HOH
644
A
HOH
249
4
HOH
HOH
645
A
HOH
250
4
HOH
HOH
646
A
HOH
251
4
HOH
HOH
647
A
HOH
252
4
HOH
HOH
648
A
HOH
253
4
HOH
HOH
649
A
HOH
254
4
HOH
HOH
650
A
HOH
255
4
HOH
HOH
651
A
HOH
256
4
HOH
HOH
652
A
HOH
257
4
HOH
HOH
653
A
HOH
258
4
HOH
HOH
654
A
HOH
261
4
HOH
HOH
655
A
HOH
262
4
HOH
HOH
656
A
HOH
265
4
HOH
HOH
657
A
HOH
267
4
HOH
HOH
658
A
HOH
268
4
HOH
HOH
659
A
HOH
269
4
HOH
HOH
660
A
HOH
270
4
HOH
HOH
661
A
HOH
271
4
HOH
HOH
662
A
HOH
272
4
HOH
HOH
663
A
HOH
273
4
HOH
HOH
664
A
HOH
274
4
HOH
HOH
665
A
HOH
275
4
HOH
HOH
666
A
HOH
276
4
HOH
HOH
667
A
HOH
277
4
HOH
HOH
668
A
HOH
278
4
HOH
HOH
669
A
HOH
279
4
HOH
HOH
670
A
HOH
280
4
HOH
HOH
671
A
HOH
281
4
HOH
HOH
672
A
HOH
283
4
HOH
HOH
673
A
HOH
284
4
HOH
HOH
674
A
HOH
286
4
HOH
HOH
675
A
HOH
287
4
HOH
HOH
676
A
HOH
289
4
HOH
HOH
677
A
HOH
292
4
HOH
HOH
678
A
HOH
294
4
HOH
HOH
679
A
HOH
295
4
HOH
HOH
680
A
HOH
296
4
HOH
HOH
681
A
HOH
299
4
HOH
HOH
682
A
HOH
301
4
HOH
HOH
683
A
HOH
304
4
HOH
HOH
684
A
HOH
305
4
HOH
HOH
685
A
HOH
309
4
HOH
HOH
686
A
HOH
316
4
HOH
HOH
687
A
HOH
320
4
HOH
HOH
688
A
HOH
326
4
HOH
HOH
689
A
HOH
331
4
HOH
HOH
690
A
HOH
332
4
HOH
HOH
691
A
HOH
334
4
HOH
HOH
692
A
HOH
337
4
HOH
HOH
693
A
HOH
339
4
HOH
HOH
694
A
HOH
342
4
HOH
HOH
695
A
HOH
343
4
HOH
HOH
696
A
n
1
-12
A
n
2
-11
A
n
3
-10
A
n
4
-9
A
n
5
-8
A
n
6
-7
A
n
7
-6
A
n
8
-5
A
n
9
-4
A
n
10
-3
A
n
11
-2
A
n
12
-1
A
n
13
0
A
ALA
1
n
14
ALA
1
A
PRO
2
n
15
PRO
2
A
PRO
3
n
16
PRO
3
A
THR
4
n
17
THR
4
A
LEU
5
n
18
LEU
5
A
TRP
6
n
19
TRP
6
A
SER
7
n
20
SER
7
A
ARG
8
n
21
ARG
8
A
VAL
9
n
22
VAL
9
A
THR
10
n
23
THR
10
A
LYS
11
n
24
LYS
11
A
PHE
12
n
25
PHE
12
A
GLY
13
n
26
GLY
13
A
SER
14
n
27
SER
14
A
GLY
15
n
28
GLY
15
A
TRP
16
n
29
TRP
16
A
GLY
17
n
30
GLY
17
A
PHE
18
n
31
PHE
18
A
TRP
19
n
32
TRP
19
A
VAL
20
n
33
VAL
20
A
SER
21
n
34
SER
21
A
PRO
22
n
35
PRO
22
A
THR
23
n
36
THR
23
A
VAL
24
n
37
VAL
24
A
PHE
25
n
38
PHE
25
A
ILE
26
n
39
ILE
26
A
THR
27
n
40
THR
27
A
THR
28
n
41
THR
28
A
THR
29
n
42
THR
29
A
HIS
30
n
43
HIS
30
A
VAL
31
n
44
VAL
31
A
VAL
32
n
45
VAL
32
A
PRO
33
n
46
PRO
33
A
THR
34
n
47
THR
34
A
GLY
35
n
48
GLY
35
A
VAL
36
n
49
VAL
36
A
LYS
37
n
50
LYS
37
A
GLU
38
n
51
GLU
38
A
PHE
39
n
52
PHE
39
A
PHE
40
n
53
PHE
40
A
GLY
41
n
54
GLY
41
A
GLU
42
n
55
GLU
42
A
PRO
43
n
56
PRO
43
A
LEU
44
n
57
LEU
44
A
SER
45
n
58
SER
45
A
SER
46
n
59
SER
46
A
ILE
47
n
60
ILE
47
A
ALA
48
n
61
ALA
48
A
ILE
49
n
62
ILE
49
A
HIS
50
n
63
HIS
50
A
GLN
51
n
64
GLN
51
A
ALA
52
n
65
ALA
52
A
GLY
53
n
66
GLY
53
A
GLU
54
n
67
GLU
54
A
PHE
55
n
68
PHE
55
A
THR
56
n
69
THR
56
A
GLN
57
n
70
GLN
57
A
PHE
58
n
71
PHE
58
A
ARG
59
n
72
ARG
59
A
PHE
60
n
73
PHE
60
A
SER
61
n
74
SER
61
A
LYS
62
n
75
LYS
62
A
LYS
63
n
76
LYS
63
A
MET
64
n
77
MET
64
A
ARG
65
n
78
ARG
65
A
PRO
66
n
79
PRO
66
A
ASP
67
n
80
ASP
67
A
LEU
68
n
81
LEU
68
A
THR
69
n
82
THR
69
A
GLY
70
n
83
GLY
70
A
MET
71
n
84
MET
71
A
VAL
72
n
85
VAL
72
A
LEU
73
n
86
LEU
73
A
GLU
74
n
87
GLU
74
A
GLU
75
n
88
GLU
75
A
GLY
76
n
89
GLY
76
A
CYS
77
n
90
CYS
77
A
PRO
78
n
91
PRO
78
A
GLU
79
n
92
GLU
79
A
GLY
80
n
93
GLY
80
A
THR
81
n
94
THR
81
A
VAL
82
n
95
VAL
82
A
CYS
83
n
96
CYS
83
A
SER
84
n
97
SER
84
A
VAL
85
n
98
VAL
85
A
LEU
86
n
99
LEU
86
A
ILE
87
n
100
ILE
87
A
LYS
88
n
101
LYS
88
A
ARG
89
n
102
ARG
89
A
ASP
90
n
103
ASP
90
A
SER
91
n
104
SER
91
A
GLY
92
n
105
GLY
92
A
GLU
93
n
106
GLU
93
A
LEU
94
n
107
LEU
94
A
LEU
95
n
108
LEU
95
A
PRO
96
n
109
PRO
96
A
LEU
97
n
110
LEU
97
A
ALA
98
n
111
ALA
98
A
VAL
99
n
112
VAL
99
A
ARG
100
n
113
ARG
100
A
MET
101
n
114
MET
101
A
GLY
102
n
115
GLY
102
A
ALA
103
n
116
ALA
103
A
ILE
104
n
117
ILE
104
A
ALA
105
n
118
ALA
105
A
SER
106
n
119
SER
106
A
MET
107
n
120
MET
107
A
ARG
108
n
121
ARG
108
A
ILE
109
n
122
ILE
109
A
GLN
110
n
123
GLN
110
A
GLY
111
n
124
GLY
111
A
ARG
112
n
125
ARG
112
A
LEU
113
n
126
LEU
113
A
VAL
114
n
127
VAL
114
A
HIS
115
n
128
HIS
115
A
GLY
116
n
129
GLY
116
A
GLN
117
n
130
GLN
117
A
SER
118
n
131
SER
118
A
GLY
119
n
132
GLY
119
A
MET
120
n
133
MET
120
A
LEU
121
n
134
LEU
121
A
LEU
122
n
135
LEU
122
A
n
136
123
A
n
137
124
A
n
138
125
A
n
139
126
A
n
140
127
A
n
141
128
A
n
142
129
A
n
143
130
A
n
144
131
A
n
145
132
A
n
146
133
A
THR
134
n
147
THR
134
A
ILE
135
n
148
ILE
135
A
PRO
136
n
149
PRO
136
A
GLY
137
n
150
GLY
137
A
ASP
138
n
151
ASP
138
A
CYS
139
n
152
CYS
139
A
GLY
140
n
153
GLY
140
A
ALA
141
n
154
ALA
141
A
PRO
142
n
155
PRO
142
A
TYR
143
n
156
TYR
143
A
VAL
144
n
157
VAL
144
A
HIS
145
n
158
HIS
145
A
LYS
146
n
159
LYS
146
A
ARG
147
n
160
ARG
147
A
GLY
148
n
161
GLY
148
A
ASN
149
n
162
ASN
149
A
ASP
150
n
163
ASP
150
A
TRP
151
n
164
TRP
151
A
VAL
152
n
165
VAL
152
A
VAL
153
n
166
VAL
153
A
CYS
154
n
167
CYS
154
A
GLY
155
n
168
GLY
155
A
VAL
156
n
169
VAL
156
A
HIS
157
n
170
HIS
157
A
ALA
158
n
171
ALA
158
A
ALA
159
n
172
ALA
159
A
ALA
160
n
173
ALA
160
A
THR
161
n
174
THR
161
A
LYS
162
n
175
LYS
162
A
SER
163
n
176
SER
163
A
GLY
164
n
177
GLY
164
A
ASN
165
n
178
ASN
165
A
THR
166
n
179
THR
166
A
VAL
167
n
180
VAL
167
A
VAL
168
n
181
VAL
168
A
CYS
169
n
182
CYS
169
A
ALA
170
n
183
ALA
170
A
VAL
171
n
184
VAL
171
A
GLN
172
n
185
GLN
172
A
ALA
173
n
186
ALA
173
A
GLY
174
n
187
GLY
174
A
GLU
175
n
188
GLU
175
A
GLY
176
n
189
GLY
176
A
GLU
177
n
190
GLU
177
A
THR
178
n
191
THR
178
A
ALA
179
n
192
ALA
179
A
LEU
180
n
193
LEU
180
A
GLU
181
n
194
GLU
181
A
author_defined_assembly
2
dimeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
-0.5000000000
-0.8660254038
0.0000000000
-0.8660254038
0.5000000000
0.0000000000
0.0000000000
0.0000000000
-1.0000000000
9_555
-x,-x+y,-z+1/3
crystal symmetry operation
0.0000000000
0.0000000000
17.1230000000
A
N
THR
10
A
N
THR
23
A
O
GLY
17
A
O
GLY
30
A
N
PHE
18
A
N
PHE
31
A
O
ILE
26
A
O
ILE
39
A
N
PHE
25
A
N
PHE
38
A
O
PHE
58
A
O
PHE
71
A
O
GLN
57
A
O
GLN
70
A
N
HIS
50
A
N
HIS
63
A
N
PHE
39
A
N
PHE
52
A
O
GLU
42
A
O
GLU
55
A
N
VAL
72
A
N
VAL
85
A
O
VAL
153
A
O
VAL
166
A
N
ALA
158
A
N
ALA
171
A
O
VAL
168
A
O
VAL
181
A
O
CYS
169
A
O
CYS
182
A
N
GLN
117
A
N
GLN
130
A
O
SER
118
A
O
SER
131
A
N
GLY
102
A
N
GLY
115
A
O
LEU
95
A
O
LEU
108
A
N
ILE
87
A
N
ILE
100
A
N
SER
84
A
N
SER
97
A
O
VAL
144
A
O
VAL
157
A
N
ARG
147
A
N
ARG
160
A
O
ASP
150
A
O
ASP
163
1
A
PO4
403
C
PO4
1
A
MET
-12
A
MET
1
1
Y
1
A
ALA
-11
A
ALA
2
1
Y
1
A
HIS
-10
A
HIS
3
1
Y
1
A
HIS
-9
A
HIS
4
1
Y
1
A
HIS
-8
A
HIS
5
1
Y
1
A
HIS
-7
A
HIS
6
1
Y
1
A
HIS
-6
A
HIS
7
1
Y
1
A
HIS
-5
A
HIS
8
1
Y
1
A
ASP
-4
A
ASP
9
1
Y
1
A
ASP
-3
A
ASP
10
1
Y
1
A
ASP
-2
A
ASP
11
1
Y
1
A
ASP
-1
A
ASP
12
1
Y
1
A
LYS
0
A
LYS
13
1
Y
1
A
THR
123
A
THR
136
1
Y
1
A
GLY
124
A
GLY
137
1
Y
1
A
ALA
125
A
ALA
138
1
Y
1
A
ASN
126
A
ASN
139
1
Y
1
A
ALA
127
A
ALA
140
1
Y
1
A
LYS
128
A
LYS
141
1
Y
1
A
GLY
129
A
GLY
142
1
Y
1
A
MET
130
A
MET
143
1
Y
1
A
ASP
131
A
ASP
144
1
Y
1
A
LEU
132
A
LEU
145
1
Y
1
A
GLY
133
A
GLY
146
1
Y
1
A
A
OE1
NH1
GLN
ARG
51
112
1.31
1_555
12_564
1
A
A
O2
O3
PO4
PO4
403
403
1.34
1_555
9_555
1
A
A
P
O2
PO4
PO4
403
403
1.50
1_555
9_555
1
A
A
O1
O1
PO4
PO4
403
403
1.50
1_555
9_555
1
A
A
P
O1
PO4
PO4
403
403
1.53
1_555
9_555
1
A
A
P
O3
PO4
PO4
403
403
1.54
1_555
9_555
1
A
A
P
O4
PO4
PO4
403
403
1.56
1_555
9_555
1
A
A
O1
O4
PO4
PO4
403
403
1.64
1_555
9_555
1
A
A
O3
O4
PO4
PO4
403
403
1.84
1_555
9_555
1
A
A
O2
O4
PO4
PO4
403
403
1.84
1_555
9_555
1
A
A
O3
O3
PO4
PO4
403
403
2.10
1_555
9_555
1
A
A
O1
O2
PO4
PO4
403
403
2.14
1_555
9_555
1
A
A
CD
NH1
GLN
ARG
51
112
2.18
1_555
12_564
1
A
ASN
165
85.53
27.16
17.31
-0.06000
-0.03000
0.00000
-0.06000
0.00000
0.09000
0.961
0.951
0.211
0.185
1.50
105.41
1800
36046
36046
5.000
99.0
2.309
0.040
1
MOLECULAR REPLACEMENT
MAXIMUM LIKELIHOOD
MASK
1.50
105.41
293
1571
7
0
1271
0.008
0.022
1305
1.207
1.951
1771
6.485
5.000
168
37.522
22.766
47
11.219
15.000
207
17.037
15.000
8
0.083
0.200
200
0.005
0.020
970
0.215
0.200
578
0.305
0.200
892
0.142
0.200
231
0.437
0.200
76
0.276
0.200
57
0.955
1.500
856
1.494
2.000
1347
2.116
3.000
507
2.794
4.500
424
1.694
3.000
1363
3.076
3.000
297
2.148
3.000
1276
0.373
0.289
1.54
129
2464
98.29
1.500
31.500
2FYQ
36055
1
99.1
0.457
1.50
1.55
4.100
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Apr 24 2005
http://www.msc.com/protein/dtrek.html
d*TREK
package
9.4LDz
phasing
R. J. Read
cimr-phaser@lists.cam.ac.uk
http://www-structmed.cimr.cam.ac.uk/phaser/
PHASER
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
Nov. 1, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.701
Crystal Structure of the Norwalk Virus Protease
1
N
N
2
N
N
3
N
N
2
N
N
4
N
N
A
PRO
2
A
PRO
15
HELX_P
A
ARG
8
A
ARG
21
1
1
7
A
HIS
30
A
HIS
43
HELX_P
A
VAL
32
A
VAL
45
5
2
3
A
ILE
135
A
ILE
148
HELX_P
A
CYS
139
A
CYS
152
5
3
5
VIRAL PROTEIN
protease, norovirus, Norwalk virus, Calicivirus, VIRAL PROTEIN
Q83883_9CALI
UNP
1
1101
Q83883
1101
1281
2FYQ
1
181
Q83883
A
1
14
194
1
initiating methionine
MET
-12
2FYQ
A
Q83883
UNP
1
1
cloning artifact
ALA
-11
2FYQ
A
Q83883
UNP
2
1
expression tag
HIS
-10
2FYQ
A
Q83883
UNP
3
1
expression tag
HIS
-9
2FYQ
A
Q83883
UNP
4
1
expression tag
HIS
-8
2FYQ
A
Q83883
UNP
5
1
expression tag
HIS
-7
2FYQ
A
Q83883
UNP
6
1
expression tag
HIS
-6
2FYQ
A
Q83883
UNP
7
1
expression tag
HIS
-5
2FYQ
A
Q83883
UNP
8
1
cloning artifact
ASP
-4
2FYQ
A
Q83883
UNP
9
1
cloning artifact
ASP
-3
2FYQ
A
Q83883
UNP
10
1
cloning artifact
ASP
-2
2FYQ
A
Q83883
UNP
11
1
cloning artifact
ASP
-1
2FYQ
A
Q83883
UNP
12
1
cloning artifact
LYS
0
2FYQ
A
Q83883
UNP
13
5
2
8
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
VAL
9
A
VAL
22
A
PHE
12
A
PHE
25
A
GLY
15
A
GLY
28
A
TRP
19
A
TRP
32
A
VAL
24
A
VAL
37
A
THR
28
A
THR
41
A
PHE
55
A
PHE
68
A
PHE
60
A
PHE
73
A
ILE
47
A
ILE
60
A
ALA
52
A
ALA
65
A
GLU
38
A
GLU
51
A
PHE
39
A
PHE
52
A
GLU
42
A
GLU
55
A
PRO
43
A
PRO
56
A
VAL
72
A
VAL
85
A
LEU
73
A
LEU
86
A
ASP
150
A
ASP
163
A
ALA
160
A
ALA
173
A
THR
166
A
THR
179
A
ALA
170
A
ALA
183
A
ARG
112
A
ARG
125
A
LEU
121
A
LEU
134
A
LEU
94
A
LEU
107
A
ILE
109
A
ILE
122
A
VAL
82
A
VAL
95
A
LYS
88
A
LYS
101
A
PRO
142
A
PRO
155
A
ARG
147
A
ARG
160
A
ASP
150
A
ASP
163
A
ALA
160
A
ALA
173
BINDING SITE FOR RESIDUE CL A 401
A
CL
401
Software
4
BINDING SITE FOR RESIDUE PO4 A 403
A
PO4
403
Software
10
BINDING SITE FOR RESIDUE CL A 402
A
CL
402
Software
4
A
HOH
621
E
HOH
4
1_555
A
HOH
668
E
HOH
4
1_555
A
HOH
675
E
HOH
4
1_555
A
HOH
689
E
HOH
4
1_555
A
HIS
50
A
HIS
63
10
1_555
A
GLN
57
A
GLN
70
10
9_555
A
GLN
57
A
GLN
70
10
1_555
A
ARG
59
A
ARG
72
10
1_555
A
ARG
59
A
ARG
72
10
9_555
A
HOH
483
E
HOH
10
9_555
A
HOH
483
E
HOH
10
1_555
A
HOH
500
E
HOH
10
9_555
A
HOH
612
E
HOH
10
1_555
A
HOH
612
E
HOH
10
9_555
A
LYS
63
A
LYS
76
4
9_555
A
PRO
66
A
PRO
79
4
9_555
A
HOH
467
E
HOH
4
9_555
A
HOH
652
E
HOH
4
9_555
179
P 65 2 2