0.008208 0.004739 0.000000 0.000000 0.009478 0.000000 0.000000 0.000000 0.019467 0.00000 0.00000 0.00000 Zeitler, C.E. Estes, M.K. Venkataram Prasad, B.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 121.833 121.833 51.369 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking O4 P -3 94.971 PHOSPHATE ION non-polymer C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N N N 252 S C N 253 N C N 254 N O N 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C N 262 N O N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N P N 275 N O N 276 N O N 277 N O N 278 N O N 279 N N N 280 S C N 281 N C N 282 N O N 283 N C N 284 N C N 285 N C N 286 N O N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N H N 296 N N N 297 S C N 298 N C N 299 N O N 300 N C N 301 N O N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N N N 311 S C N 312 N C N 313 N O N 314 R C N 315 N O N 316 N C N 317 N O N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N N N 328 S C N 329 N C N 330 N O N 331 N C Y 332 N C Y 333 N C Y 334 N C Y 335 N N Y 336 N C Y 337 N C Y 338 N C Y 339 N C Y 340 N C N 341 N O N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N N N 355 S C N 356 N C N 357 N O N 358 N C Y 359 N C Y 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C N 365 N O N 366 N O N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N N N 379 S C N 380 N C N 381 N O N 382 N C N 383 N C N 384 N C N 385 N O N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N doub N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N doub N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N doub N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N doub N 317 N sing N 318 N sing N 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N doub Y 326 N sing Y 327 N sing N 328 N sing Y 329 N sing Y 330 N doub N 331 N sing Y 332 N doub N 333 N sing Y 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N doub N 345 N sing N 346 N sing N 347 N sing N 348 N sing Y 349 N doub Y 350 N sing Y 351 N sing N 352 N sing Y 353 N doub N 354 N sing Y 355 N doub N 356 N sing Y 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N doub N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing US J.Virol. JOVIAM 0825 0022-538X 80 5050 5058 10.1128/JVI.80.10.5050-5058.2006 16641296 X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution. 2006 10.2210/pdb2fyq/pdb pdb_00002fyq 93.0 1 CCD ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9794 1.0 19-ID APS 0.9794 0.9794 SYNCHROTRON APS BEAMLINE 19-ID 20786.738 Chymotrypsin-like cysteine proteinase 1 man polymer 35.453 CHLORIDE ION 2 syn non-polymer 94.971 PHOSPHATE ION 1 syn non-polymer 18.015 water 293 nat water no no MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norovirus Escherichia Escherichia coli sample 11983 Norwalk virus 469008 Escherichia coli BL21(DE3) BL-21(DE3) PLASMID PET46 EK-LIC 1 2.87 57.14 5.50 0.1M lithium sulfate, 0.1M bis-tris, 0.1M EDTA, 20% PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 5.50 298 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif struct_site repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2006-07-25 1 1 2008-04-01 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-02-08 REL REL CL CHLORIDE ION PO4 PHOSPHATE ION HOH water CL 401 2 CL CL 401 A PO4 403 3 PO4 PO4 403 A CL 402 2 CL CL 402 A HOH 1 4 HOH HOH 404 A HOH 2 4 HOH HOH 405 A HOH 3 4 HOH HOH 406 A HOH 4 4 HOH HOH 407 A HOH 5 4 HOH HOH 408 A HOH 6 4 HOH HOH 409 A HOH 7 4 HOH HOH 410 A HOH 8 4 HOH HOH 411 A HOH 9 4 HOH HOH 412 A HOH 10 4 HOH HOH 413 A HOH 11 4 HOH HOH 414 A HOH 12 4 HOH HOH 415 A HOH 13 4 HOH HOH 416 A HOH 14 4 HOH HOH 417 A HOH 15 4 HOH HOH 418 A HOH 16 4 HOH HOH 419 A HOH 17 4 HOH HOH 420 A HOH 18 4 HOH HOH 421 A HOH 19 4 HOH HOH 422 A HOH 20 4 HOH HOH 423 A HOH 21 4 HOH HOH 424 A HOH 22 4 HOH HOH 425 A HOH 23 4 HOH HOH 426 A HOH 25 4 HOH HOH 427 A HOH 26 4 HOH HOH 428 A HOH 27 4 HOH HOH 429 A HOH 28 4 HOH HOH 430 A HOH 29 4 HOH HOH 431 A HOH 30 4 HOH HOH 432 A HOH 31 4 HOH HOH 433 A HOH 32 4 HOH HOH 434 A HOH 33 4 HOH HOH 435 A HOH 34 4 HOH HOH 436 A HOH 35 4 HOH HOH 437 A HOH 36 4 HOH HOH 438 A HOH 37 4 HOH HOH 439 A HOH 38 4 HOH HOH 440 A HOH 39 4 HOH HOH 441 A HOH 40 4 HOH HOH 442 A HOH 41 4 HOH HOH 443 A HOH 42 4 HOH HOH 444 A HOH 43 4 HOH HOH 445 A HOH 44 4 HOH HOH 446 A HOH 45 4 HOH HOH 447 A HOH 46 4 HOH HOH 448 A HOH 47 4 HOH HOH 449 A HOH 48 4 HOH HOH 450 A HOH 49 4 HOH HOH 451 A HOH 50 4 HOH HOH 452 A HOH 51 4 HOH HOH 453 A HOH 52 4 HOH HOH 454 A HOH 53 4 HOH HOH 455 A HOH 54 4 HOH HOH 456 A HOH 55 4 HOH HOH 457 A HOH 56 4 HOH HOH 458 A HOH 57 4 HOH HOH 459 A HOH 58 4 HOH HOH 460 A HOH 59 4 HOH HOH 461 A HOH 60 4 HOH HOH 462 A HOH 61 4 HOH HOH 463 A HOH 62 4 HOH HOH 464 A HOH 63 4 HOH HOH 465 A HOH 64 4 HOH HOH 466 A HOH 65 4 HOH HOH 467 A HOH 66 4 HOH HOH 468 A HOH 67 4 HOH HOH 469 A HOH 68 4 HOH HOH 470 A HOH 69 4 HOH HOH 471 A HOH 70 4 HOH HOH 472 A HOH 71 4 HOH HOH 473 A HOH 72 4 HOH HOH 474 A HOH 73 4 HOH HOH 475 A HOH 74 4 HOH HOH 476 A HOH 75 4 HOH HOH 477 A HOH 76 4 HOH HOH 478 A HOH 77 4 HOH HOH 479 A HOH 78 4 HOH HOH 480 A HOH 79 4 HOH HOH 481 A HOH 80 4 HOH HOH 482 A HOH 81 4 HOH HOH 483 A HOH 82 4 HOH HOH 484 A HOH 83 4 HOH HOH 485 A HOH 84 4 HOH HOH 486 A HOH 85 4 HOH HOH 487 A HOH 86 4 HOH HOH 488 A HOH 87 4 HOH HOH 489 A HOH 88 4 HOH HOH 490 A HOH 89 4 HOH HOH 491 A HOH 90 4 HOH HOH 492 A HOH 91 4 HOH HOH 493 A HOH 92 4 HOH HOH 494 A HOH 93 4 HOH HOH 495 A HOH 94 4 HOH HOH 496 A HOH 95 4 HOH HOH 497 A HOH 96 4 HOH HOH 498 A HOH 97 4 HOH HOH 499 A HOH 98 4 HOH HOH 500 A HOH 99 4 HOH HOH 501 A HOH 100 4 HOH HOH 502 A HOH 101 4 HOH HOH 503 A HOH 102 4 HOH HOH 504 A HOH 103 4 HOH HOH 505 A HOH 104 4 HOH HOH 506 A HOH 105 4 HOH HOH 507 A HOH 106 4 HOH HOH 508 A HOH 107 4 HOH HOH 509 A HOH 108 4 HOH HOH 510 A HOH 109 4 HOH HOH 511 A HOH 110 4 HOH HOH 512 A HOH 111 4 HOH HOH 513 A HOH 112 4 HOH HOH 514 A HOH 113 4 HOH HOH 515 A HOH 114 4 HOH HOH 516 A HOH 115 4 HOH HOH 517 A HOH 116 4 HOH HOH 518 A HOH 117 4 HOH HOH 519 A HOH 118 4 HOH HOH 520 A HOH 119 4 HOH HOH 521 A HOH 120 4 HOH HOH 522 A HOH 121 4 HOH HOH 523 A HOH 122 4 HOH HOH 524 A HOH 123 4 HOH HOH 525 A HOH 124 4 HOH HOH 526 A HOH 125 4 HOH HOH 527 A HOH 126 4 HOH HOH 528 A HOH 127 4 HOH HOH 529 A HOH 128 4 HOH HOH 530 A HOH 129 4 HOH HOH 531 A HOH 130 4 HOH HOH 532 A HOH 131 4 HOH HOH 533 A HOH 132 4 HOH HOH 534 A HOH 133 4 HOH HOH 535 A HOH 134 4 HOH HOH 536 A HOH 135 4 HOH HOH 537 A HOH 136 4 HOH HOH 538 A HOH 137 4 HOH HOH 539 A HOH 138 4 HOH HOH 540 A HOH 140 4 HOH HOH 541 A HOH 141 4 HOH HOH 542 A HOH 142 4 HOH HOH 543 A HOH 143 4 HOH HOH 544 A HOH 144 4 HOH HOH 545 A HOH 145 4 HOH HOH 546 A HOH 146 4 HOH HOH 547 A HOH 147 4 HOH HOH 548 A HOH 148 4 HOH HOH 549 A HOH 149 4 HOH HOH 550 A HOH 150 4 HOH HOH 551 A HOH 151 4 HOH HOH 552 A HOH 152 4 HOH HOH 553 A HOH 153 4 HOH HOH 554 A HOH 154 4 HOH HOH 555 A HOH 155 4 HOH HOH 556 A HOH 156 4 HOH HOH 557 A HOH 157 4 HOH HOH 558 A HOH 158 4 HOH HOH 559 A HOH 159 4 HOH HOH 560 A HOH 160 4 HOH HOH 561 A HOH 161 4 HOH HOH 562 A HOH 162 4 HOH HOH 563 A HOH 163 4 HOH HOH 564 A HOH 165 4 HOH HOH 565 A HOH 166 4 HOH HOH 566 A HOH 167 4 HOH HOH 567 A HOH 168 4 HOH HOH 568 A HOH 171 4 HOH HOH 569 A HOH 172 4 HOH HOH 570 A HOH 173 4 HOH HOH 571 A HOH 174 4 HOH HOH 572 A HOH 175 4 HOH HOH 573 A HOH 176 4 HOH HOH 574 A HOH 177 4 HOH HOH 575 A HOH 178 4 HOH HOH 576 A HOH 179 4 HOH HOH 577 A HOH 180 4 HOH HOH 578 A HOH 181 4 HOH HOH 579 A HOH 182 4 HOH HOH 580 A HOH 183 4 HOH HOH 581 A HOH 184 4 HOH HOH 582 A HOH 185 4 HOH HOH 583 A HOH 186 4 HOH HOH 584 A HOH 187 4 HOH HOH 585 A HOH 188 4 HOH HOH 586 A HOH 189 4 HOH HOH 587 A HOH 190 4 HOH HOH 588 A HOH 191 4 HOH HOH 589 A HOH 192 4 HOH HOH 590 A HOH 193 4 HOH HOH 591 A HOH 194 4 HOH HOH 592 A HOH 195 4 HOH HOH 593 A HOH 196 4 HOH HOH 594 A HOH 197 4 HOH HOH 595 A HOH 198 4 HOH HOH 596 A HOH 199 4 HOH HOH 597 A HOH 200 4 HOH HOH 598 A HOH 201 4 HOH HOH 599 A HOH 202 4 HOH HOH 600 A HOH 203 4 HOH HOH 601 A HOH 204 4 HOH HOH 602 A HOH 205 4 HOH HOH 603 A HOH 206 4 HOH HOH 604 A HOH 207 4 HOH HOH 605 A HOH 208 4 HOH HOH 606 A HOH 209 4 HOH HOH 607 A HOH 210 4 HOH HOH 608 A HOH 211 4 HOH HOH 609 A HOH 212 4 HOH HOH 610 A HOH 213 4 HOH HOH 611 A HOH 214 4 HOH HOH 612 A HOH 215 4 HOH HOH 613 A HOH 216 4 HOH HOH 614 A HOH 217 4 HOH HOH 615 A HOH 218 4 HOH HOH 616 A HOH 219 4 HOH HOH 617 A HOH 221 4 HOH HOH 618 A HOH 222 4 HOH HOH 619 A HOH 223 4 HOH HOH 620 A HOH 224 4 HOH HOH 621 A HOH 225 4 HOH HOH 622 A HOH 226 4 HOH HOH 623 A HOH 227 4 HOH HOH 624 A HOH 228 4 HOH HOH 625 A HOH 229 4 HOH HOH 626 A HOH 230 4 HOH HOH 627 A HOH 231 4 HOH HOH 628 A HOH 232 4 HOH HOH 629 A HOH 233 4 HOH HOH 630 A HOH 234 4 HOH HOH 631 A HOH 235 4 HOH HOH 632 A HOH 236 4 HOH HOH 633 A HOH 237 4 HOH HOH 634 A HOH 238 4 HOH HOH 635 A HOH 239 4 HOH HOH 636 A HOH 240 4 HOH HOH 637 A HOH 241 4 HOH HOH 638 A HOH 242 4 HOH HOH 639 A HOH 244 4 HOH HOH 640 A HOH 245 4 HOH HOH 641 A HOH 246 4 HOH HOH 642 A HOH 247 4 HOH HOH 643 A HOH 248 4 HOH HOH 644 A HOH 249 4 HOH HOH 645 A HOH 250 4 HOH HOH 646 A HOH 251 4 HOH HOH 647 A HOH 252 4 HOH HOH 648 A HOH 253 4 HOH HOH 649 A HOH 254 4 HOH HOH 650 A HOH 255 4 HOH HOH 651 A HOH 256 4 HOH HOH 652 A HOH 257 4 HOH HOH 653 A HOH 258 4 HOH HOH 654 A HOH 261 4 HOH HOH 655 A HOH 262 4 HOH HOH 656 A HOH 265 4 HOH HOH 657 A HOH 267 4 HOH HOH 658 A HOH 268 4 HOH HOH 659 A HOH 269 4 HOH HOH 660 A HOH 270 4 HOH HOH 661 A HOH 271 4 HOH HOH 662 A HOH 272 4 HOH HOH 663 A HOH 273 4 HOH HOH 664 A HOH 274 4 HOH HOH 665 A HOH 275 4 HOH HOH 666 A HOH 276 4 HOH HOH 667 A HOH 277 4 HOH HOH 668 A HOH 278 4 HOH HOH 669 A HOH 279 4 HOH HOH 670 A HOH 280 4 HOH HOH 671 A HOH 281 4 HOH HOH 672 A HOH 283 4 HOH HOH 673 A HOH 284 4 HOH HOH 674 A HOH 286 4 HOH HOH 675 A HOH 287 4 HOH HOH 676 A HOH 289 4 HOH HOH 677 A HOH 292 4 HOH HOH 678 A HOH 294 4 HOH HOH 679 A HOH 295 4 HOH HOH 680 A HOH 296 4 HOH HOH 681 A HOH 299 4 HOH HOH 682 A HOH 301 4 HOH HOH 683 A HOH 304 4 HOH HOH 684 A HOH 305 4 HOH HOH 685 A HOH 309 4 HOH HOH 686 A HOH 316 4 HOH HOH 687 A HOH 320 4 HOH HOH 688 A HOH 326 4 HOH HOH 689 A HOH 331 4 HOH HOH 690 A HOH 332 4 HOH HOH 691 A HOH 334 4 HOH HOH 692 A HOH 337 4 HOH HOH 693 A HOH 339 4 HOH HOH 694 A HOH 342 4 HOH HOH 695 A HOH 343 4 HOH HOH 696 A n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A ALA 1 n 14 ALA 1 A PRO 2 n 15 PRO 2 A PRO 3 n 16 PRO 3 A THR 4 n 17 THR 4 A LEU 5 n 18 LEU 5 A TRP 6 n 19 TRP 6 A SER 7 n 20 SER 7 A ARG 8 n 21 ARG 8 A VAL 9 n 22 VAL 9 A THR 10 n 23 THR 10 A LYS 11 n 24 LYS 11 A PHE 12 n 25 PHE 12 A GLY 13 n 26 GLY 13 A SER 14 n 27 SER 14 A GLY 15 n 28 GLY 15 A TRP 16 n 29 TRP 16 A GLY 17 n 30 GLY 17 A PHE 18 n 31 PHE 18 A TRP 19 n 32 TRP 19 A VAL 20 n 33 VAL 20 A SER 21 n 34 SER 21 A PRO 22 n 35 PRO 22 A THR 23 n 36 THR 23 A VAL 24 n 37 VAL 24 A PHE 25 n 38 PHE 25 A ILE 26 n 39 ILE 26 A THR 27 n 40 THR 27 A THR 28 n 41 THR 28 A THR 29 n 42 THR 29 A HIS 30 n 43 HIS 30 A VAL 31 n 44 VAL 31 A VAL 32 n 45 VAL 32 A PRO 33 n 46 PRO 33 A THR 34 n 47 THR 34 A GLY 35 n 48 GLY 35 A VAL 36 n 49 VAL 36 A LYS 37 n 50 LYS 37 A GLU 38 n 51 GLU 38 A PHE 39 n 52 PHE 39 A PHE 40 n 53 PHE 40 A GLY 41 n 54 GLY 41 A GLU 42 n 55 GLU 42 A PRO 43 n 56 PRO 43 A LEU 44 n 57 LEU 44 A SER 45 n 58 SER 45 A SER 46 n 59 SER 46 A ILE 47 n 60 ILE 47 A ALA 48 n 61 ALA 48 A ILE 49 n 62 ILE 49 A HIS 50 n 63 HIS 50 A GLN 51 n 64 GLN 51 A ALA 52 n 65 ALA 52 A GLY 53 n 66 GLY 53 A GLU 54 n 67 GLU 54 A PHE 55 n 68 PHE 55 A THR 56 n 69 THR 56 A GLN 57 n 70 GLN 57 A PHE 58 n 71 PHE 58 A ARG 59 n 72 ARG 59 A PHE 60 n 73 PHE 60 A SER 61 n 74 SER 61 A LYS 62 n 75 LYS 62 A LYS 63 n 76 LYS 63 A MET 64 n 77 MET 64 A ARG 65 n 78 ARG 65 A PRO 66 n 79 PRO 66 A ASP 67 n 80 ASP 67 A LEU 68 n 81 LEU 68 A THR 69 n 82 THR 69 A GLY 70 n 83 GLY 70 A MET 71 n 84 MET 71 A VAL 72 n 85 VAL 72 A LEU 73 n 86 LEU 73 A GLU 74 n 87 GLU 74 A GLU 75 n 88 GLU 75 A GLY 76 n 89 GLY 76 A CYS 77 n 90 CYS 77 A PRO 78 n 91 PRO 78 A GLU 79 n 92 GLU 79 A GLY 80 n 93 GLY 80 A THR 81 n 94 THR 81 A VAL 82 n 95 VAL 82 A CYS 83 n 96 CYS 83 A SER 84 n 97 SER 84 A VAL 85 n 98 VAL 85 A LEU 86 n 99 LEU 86 A ILE 87 n 100 ILE 87 A LYS 88 n 101 LYS 88 A ARG 89 n 102 ARG 89 A ASP 90 n 103 ASP 90 A SER 91 n 104 SER 91 A GLY 92 n 105 GLY 92 A GLU 93 n 106 GLU 93 A LEU 94 n 107 LEU 94 A LEU 95 n 108 LEU 95 A PRO 96 n 109 PRO 96 A LEU 97 n 110 LEU 97 A ALA 98 n 111 ALA 98 A VAL 99 n 112 VAL 99 A ARG 100 n 113 ARG 100 A MET 101 n 114 MET 101 A GLY 102 n 115 GLY 102 A ALA 103 n 116 ALA 103 A ILE 104 n 117 ILE 104 A ALA 105 n 118 ALA 105 A SER 106 n 119 SER 106 A MET 107 n 120 MET 107 A ARG 108 n 121 ARG 108 A ILE 109 n 122 ILE 109 A GLN 110 n 123 GLN 110 A GLY 111 n 124 GLY 111 A ARG 112 n 125 ARG 112 A LEU 113 n 126 LEU 113 A VAL 114 n 127 VAL 114 A HIS 115 n 128 HIS 115 A GLY 116 n 129 GLY 116 A GLN 117 n 130 GLN 117 A SER 118 n 131 SER 118 A GLY 119 n 132 GLY 119 A MET 120 n 133 MET 120 A LEU 121 n 134 LEU 121 A LEU 122 n 135 LEU 122 A n 136 123 A n 137 124 A n 138 125 A n 139 126 A n 140 127 A n 141 128 A n 142 129 A n 143 130 A n 144 131 A n 145 132 A n 146 133 A THR 134 n 147 THR 134 A ILE 135 n 148 ILE 135 A PRO 136 n 149 PRO 136 A GLY 137 n 150 GLY 137 A ASP 138 n 151 ASP 138 A CYS 139 n 152 CYS 139 A GLY 140 n 153 GLY 140 A ALA 141 n 154 ALA 141 A PRO 142 n 155 PRO 142 A TYR 143 n 156 TYR 143 A VAL 144 n 157 VAL 144 A HIS 145 n 158 HIS 145 A LYS 146 n 159 LYS 146 A ARG 147 n 160 ARG 147 A GLY 148 n 161 GLY 148 A ASN 149 n 162 ASN 149 A ASP 150 n 163 ASP 150 A TRP 151 n 164 TRP 151 A VAL 152 n 165 VAL 152 A VAL 153 n 166 VAL 153 A CYS 154 n 167 CYS 154 A GLY 155 n 168 GLY 155 A VAL 156 n 169 VAL 156 A HIS 157 n 170 HIS 157 A ALA 158 n 171 ALA 158 A ALA 159 n 172 ALA 159 A ALA 160 n 173 ALA 160 A THR 161 n 174 THR 161 A LYS 162 n 175 LYS 162 A SER 163 n 176 SER 163 A GLY 164 n 177 GLY 164 A ASN 165 n 178 ASN 165 A THR 166 n 179 THR 166 A VAL 167 n 180 VAL 167 A VAL 168 n 181 VAL 168 A CYS 169 n 182 CYS 169 A ALA 170 n 183 ALA 170 A VAL 171 n 184 VAL 171 A GLN 172 n 185 GLN 172 A ALA 173 n 186 ALA 173 A GLY 174 n 187 GLY 174 A GLU 175 n 188 GLU 175 A GLY 176 n 189 GLY 176 A GLU 177 n 190 GLU 177 A THR 178 n 191 THR 178 A ALA 179 n 192 ALA 179 A LEU 180 n 193 LEU 180 A GLU 181 n 194 GLU 181 A author_defined_assembly 2 dimeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 9_555 -x,-x+y,-z+1/3 crystal symmetry operation 0.0000000000 0.0000000000 17.1230000000 A N THR 10 A N THR 23 A O GLY 17 A O GLY 30 A N PHE 18 A N PHE 31 A O ILE 26 A O ILE 39 A N PHE 25 A N PHE 38 A O PHE 58 A O PHE 71 A O GLN 57 A O GLN 70 A N HIS 50 A N HIS 63 A N PHE 39 A N PHE 52 A O GLU 42 A O GLU 55 A N VAL 72 A N VAL 85 A O VAL 153 A O VAL 166 A N ALA 158 A N ALA 171 A O VAL 168 A O VAL 181 A O CYS 169 A O CYS 182 A N GLN 117 A N GLN 130 A O SER 118 A O SER 131 A N GLY 102 A N GLY 115 A O LEU 95 A O LEU 108 A N ILE 87 A N ILE 100 A N SER 84 A N SER 97 A O VAL 144 A O VAL 157 A N ARG 147 A N ARG 160 A O ASP 150 A O ASP 163 1 A PO4 403 C PO4 1 A MET -12 A MET 1 1 Y 1 A ALA -11 A ALA 2 1 Y 1 A HIS -10 A HIS 3 1 Y 1 A HIS -9 A HIS 4 1 Y 1 A HIS -8 A HIS 5 1 Y 1 A HIS -7 A HIS 6 1 Y 1 A HIS -6 A HIS 7 1 Y 1 A HIS -5 A HIS 8 1 Y 1 A ASP -4 A ASP 9 1 Y 1 A ASP -3 A ASP 10 1 Y 1 A ASP -2 A ASP 11 1 Y 1 A ASP -1 A ASP 12 1 Y 1 A LYS 0 A LYS 13 1 Y 1 A THR 123 A THR 136 1 Y 1 A GLY 124 A GLY 137 1 Y 1 A ALA 125 A ALA 138 1 Y 1 A ASN 126 A ASN 139 1 Y 1 A ALA 127 A ALA 140 1 Y 1 A LYS 128 A LYS 141 1 Y 1 A GLY 129 A GLY 142 1 Y 1 A MET 130 A MET 143 1 Y 1 A ASP 131 A ASP 144 1 Y 1 A LEU 132 A LEU 145 1 Y 1 A GLY 133 A GLY 146 1 Y 1 A A OE1 NH1 GLN ARG 51 112 1.31 1_555 12_564 1 A A O2 O3 PO4 PO4 403 403 1.34 1_555 9_555 1 A A P O2 PO4 PO4 403 403 1.50 1_555 9_555 1 A A O1 O1 PO4 PO4 403 403 1.50 1_555 9_555 1 A A P O1 PO4 PO4 403 403 1.53 1_555 9_555 1 A A P O3 PO4 PO4 403 403 1.54 1_555 9_555 1 A A P O4 PO4 PO4 403 403 1.56 1_555 9_555 1 A A O1 O4 PO4 PO4 403 403 1.64 1_555 9_555 1 A A O3 O4 PO4 PO4 403 403 1.84 1_555 9_555 1 A A O2 O4 PO4 PO4 403 403 1.84 1_555 9_555 1 A A O3 O3 PO4 PO4 403 403 2.10 1_555 9_555 1 A A O1 O2 PO4 PO4 403 403 2.14 1_555 9_555 1 A A CD NH1 GLN ARG 51 112 2.18 1_555 12_564 1 A ASN 165 85.53 27.16 17.31 -0.06000 -0.03000 0.00000 -0.06000 0.00000 0.09000 0.961 0.951 0.211 0.185 1.50 105.41 1800 36046 36046 5.000 99.0 2.309 0.040 1 MOLECULAR REPLACEMENT MAXIMUM LIKELIHOOD MASK 1.50 105.41 293 1571 7 0 1271 0.008 0.022 1305 1.207 1.951 1771 6.485 5.000 168 37.522 22.766 47 11.219 15.000 207 17.037 15.000 8 0.083 0.200 200 0.005 0.020 970 0.215 0.200 578 0.305 0.200 892 0.142 0.200 231 0.437 0.200 76 0.276 0.200 57 0.955 1.500 856 1.494 2.000 1347 2.116 3.000 507 2.794 4.500 424 1.694 3.000 1363 3.076 3.000 297 2.148 3.000 1276 0.373 0.289 1.54 129 2464 98.29 1.500 31.500 2FYQ 36055 1 99.1 0.457 1.50 1.55 4.100 data scaling Pflugrath, J.W. jwp@RigakuMSC.com Apr 24 2005 http://www.msc.com/protein/dtrek.html d*TREK package 9.4LDz phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC program data extraction PDB sw-help@rcsb.rutgers.edu Nov. 1, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.701 Crystal Structure of the Norwalk Virus Protease 1 N N 2 N N 3 N N 2 N N 4 N N A PRO 2 A PRO 15 HELX_P A ARG 8 A ARG 21 1 1 7 A HIS 30 A HIS 43 HELX_P A VAL 32 A VAL 45 5 2 3 A ILE 135 A ILE 148 HELX_P A CYS 139 A CYS 152 5 3 5 VIRAL PROTEIN protease, norovirus, Norwalk virus, Calicivirus, VIRAL PROTEIN Q83883_9CALI UNP 1 1101 Q83883 1101 1281 2FYQ 1 181 Q83883 A 1 14 194 1 initiating methionine MET -12 2FYQ A Q83883 UNP 1 1 cloning artifact ALA -11 2FYQ A Q83883 UNP 2 1 expression tag HIS -10 2FYQ A Q83883 UNP 3 1 expression tag HIS -9 2FYQ A Q83883 UNP 4 1 expression tag HIS -8 2FYQ A Q83883 UNP 5 1 expression tag HIS -7 2FYQ A Q83883 UNP 6 1 expression tag HIS -6 2FYQ A Q83883 UNP 7 1 expression tag HIS -5 2FYQ A Q83883 UNP 8 1 cloning artifact ASP -4 2FYQ A Q83883 UNP 9 1 cloning artifact ASP -3 2FYQ A Q83883 UNP 10 1 cloning artifact ASP -2 2FYQ A Q83883 UNP 11 1 cloning artifact ASP -1 2FYQ A Q83883 UNP 12 1 cloning artifact LYS 0 2FYQ A Q83883 UNP 13 5 2 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 9 A VAL 22 A PHE 12 A PHE 25 A GLY 15 A GLY 28 A TRP 19 A TRP 32 A VAL 24 A VAL 37 A THR 28 A THR 41 A PHE 55 A PHE 68 A PHE 60 A PHE 73 A ILE 47 A ILE 60 A ALA 52 A ALA 65 A GLU 38 A GLU 51 A PHE 39 A PHE 52 A GLU 42 A GLU 55 A PRO 43 A PRO 56 A VAL 72 A VAL 85 A LEU 73 A LEU 86 A ASP 150 A ASP 163 A ALA 160 A ALA 173 A THR 166 A THR 179 A ALA 170 A ALA 183 A ARG 112 A ARG 125 A LEU 121 A LEU 134 A LEU 94 A LEU 107 A ILE 109 A ILE 122 A VAL 82 A VAL 95 A LYS 88 A LYS 101 A PRO 142 A PRO 155 A ARG 147 A ARG 160 A ASP 150 A ASP 163 A ALA 160 A ALA 173 BINDING SITE FOR RESIDUE CL A 401 A CL 401 Software 4 BINDING SITE FOR RESIDUE PO4 A 403 A PO4 403 Software 10 BINDING SITE FOR RESIDUE CL A 402 A CL 402 Software 4 A HOH 621 E HOH 4 1_555 A HOH 668 E HOH 4 1_555 A HOH 675 E HOH 4 1_555 A HOH 689 E HOH 4 1_555 A HIS 50 A HIS 63 10 1_555 A GLN 57 A GLN 70 10 9_555 A GLN 57 A GLN 70 10 1_555 A ARG 59 A ARG 72 10 1_555 A ARG 59 A ARG 72 10 9_555 A HOH 483 E HOH 10 9_555 A HOH 483 E HOH 10 1_555 A HOH 500 E HOH 10 9_555 A HOH 612 E HOH 10 1_555 A HOH 612 E HOH 10 9_555 A LYS 63 A LYS 76 4 9_555 A PRO 66 A PRO 79 4 9_555 A HOH 467 E HOH 4 9_555 A HOH 652 E HOH 4 9_555 179 P 65 2 2