0.008299 0.004792 0.000000 0.000000 0.009583 0.000000 0.000000 0.000000 0.019513 0.00000 0.00000 0.00000 Zeitler, C.E. Estes, M.K. Venkataram Prasad, B.V. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 120.490 120.490 51.249 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N CL N 75 N N N 76 R C N 77 N C N 78 N O N 79 N C N 80 N S N 81 N O N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N N N 90 S C N 91 N C N 92 N O N 93 N C N 94 N C N 95 N C N 96 N O N 97 N N N 98 N O N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N N N 110 S C N 111 N C N 112 N O N 113 N C N 114 N C N 115 N C N 116 N O N 117 N O N 118 N O N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N N N 129 N C N 130 N C N 131 N O N 132 N O N 133 N H N 134 N H N 135 N H N 136 N H N 137 N H N 138 N N N 139 S C N 140 N C N 141 N O N 142 N C Y 143 N C Y 144 N N Y 145 N C Y 146 N C Y 147 N N N 148 N O N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N H N 159 N O N 160 N H N 161 N H N 162 N N N 163 S C N 164 N C N 165 N O N 166 S C N 167 N C N 168 N C N 169 N C N 170 N O N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N H N 184 N N N 185 S C N 186 N C N 187 N O N 188 N C N 189 N C N 190 N C N 191 N C N 192 N O N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N H N 206 N N N 207 S C N 208 N C N 209 N O N 210 N C N 211 N C N 212 N C N 213 N C N 214 N N N 215 N O N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N H N 231 N N N 232 S C N 233 N C N 234 N O N 235 N C N 236 N C N 237 N S N 238 N C N 239 N O N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N H N 251 N MG N 252 N N N 253 S C N 254 N C N 255 N O N 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C Y 261 N C Y 262 N C N 263 N O N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N N N 276 S C N 277 N C N 278 N O N 279 N C N 280 N C N 281 N C N 282 N O N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N N N 293 S C N 294 N C N 295 N O N 296 N C N 297 N O N 298 N O N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N N N 307 S C N 308 N C N 309 N O N 310 R C N 311 N O N 312 N C N 313 N O N 314 N H N 315 N H N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N N N 324 S C N 325 N C N 326 N O N 327 N C Y 328 N C Y 329 N C Y 330 N C Y 331 N N Y 332 N C Y 333 N C Y 334 N C Y 335 N C Y 336 N C N 337 N O N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N H N 344 N H N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N N N 351 S C N 352 N C N 353 N O N 354 N C Y 355 N C Y 356 N C Y 357 N C Y 358 N C Y 359 N C Y 360 N C N 361 N O N 362 N O N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N N N 375 S C N 376 N C N 377 N O N 378 N C N 379 N C N 380 N C N 381 N O N 382 N H N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N doub N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N doub N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing Y 317 N doub Y 318 N sing Y 319 N sing N 320 N sing Y 321 N doub Y 322 N sing Y 323 N sing N 324 N sing Y 325 N sing Y 326 N doub N 327 N sing Y 328 N doub N 329 N sing Y 330 N sing N 331 N sing N 332 N sing N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N doub N 341 N sing N 342 N sing N 343 N sing N 344 N sing Y 345 N doub Y 346 N sing Y 347 N sing N 348 N sing Y 349 N doub N 350 N sing Y 351 N doub N 352 N sing Y 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N doub N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing US J.Virol. JOVIAM 0825 0022-538X 80 5050 5058 10.1128/JVI.80.10.5050-5058.2006 16641296 X-ray crystallographic structure of the Norwalk virus protease at 1.5-A resolution. 2006 10.2210/pdb2fyr/pdb pdb_00002fyr 93.0 1 CCD ADSC QUANTUM 4 SINGLE WAVELENGTH M x-ray 1 0.9794 1.0 19-ID APS 0.9794 0.9794 SYNCHROTRON APS BEAMLINE 19-ID 20786.738 Chymotrypsin-like cysteine proteinase 1 man polymer 35.453 CHLORIDE ION 1 syn non-polymer 24.305 MAGNESIUM ION 1 syn non-polymer 18.015 water 103 nat water no no MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE MAHHHHHHDDDDKAPPTLWSRVTKFGSGWGFWVSPTVFITTTHVVPTGVKEFFGEPLSSIAIHQAGEFTQFRFSKKMRPD LTGMVLEEGCPEGTVCSVLIKRDSGELLPLAVRMGAIASMRIQGRLVHGQSGMLLTGANAKGMDLGTIPGDCGAPYVHKR GNDWVVCGVHAAATKSGNTVVCAVQAGEGETALE A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Norovirus Escherichia Escherichia coli sample 11983 Norwalk virus 469008 Escherichia coli BL21(DE3) BL-21(DE3) PLASMID PET46 EK-LIC 1 2.80 56.07 5.50 0.2M magnesium chloride, 0.1M bis-tris, 30% PEG 3350, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.50 298 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Derived calculations Version format compliance Data collection Database references Derived calculations 1 0 2006-07-25 1 1 2008-05-01 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_symmetry _struct_conn.pdbx_dist_value _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_symmetry _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-02-08 REL REL CL CHLORIDE ION MG MAGNESIUM ION HOH water CL 301 2 CL CL 301 A MG 302 3 MG MG 302 A HOH 2 4 HOH HOH 303 A HOH 3 4 HOH HOH 304 A HOH 4 4 HOH HOH 305 A HOH 5 4 HOH HOH 306 A HOH 6 4 HOH HOH 307 A HOH 7 4 HOH HOH 308 A HOH 8 4 HOH HOH 309 A HOH 9 4 HOH HOH 310 A HOH 10 4 HOH HOH 311 A HOH 11 4 HOH HOH 312 A HOH 12 4 HOH HOH 313 A HOH 13 4 HOH HOH 314 A HOH 14 4 HOH HOH 315 A HOH 16 4 HOH HOH 316 A HOH 17 4 HOH HOH 317 A HOH 18 4 HOH HOH 318 A HOH 19 4 HOH HOH 319 A HOH 20 4 HOH HOH 320 A HOH 21 4 HOH HOH 321 A HOH 24 4 HOH HOH 322 A HOH 26 4 HOH HOH 323 A HOH 27 4 HOH HOH 324 A HOH 28 4 HOH HOH 325 A HOH 29 4 HOH HOH 326 A HOH 30 4 HOH HOH 327 A HOH 31 4 HOH HOH 328 A HOH 32 4 HOH HOH 329 A HOH 33 4 HOH HOH 330 A HOH 34 4 HOH HOH 331 A HOH 35 4 HOH HOH 332 A HOH 36 4 HOH HOH 333 A HOH 37 4 HOH HOH 334 A HOH 39 4 HOH HOH 335 A HOH 40 4 HOH HOH 336 A HOH 41 4 HOH HOH 337 A HOH 42 4 HOH HOH 338 A HOH 43 4 HOH HOH 339 A HOH 44 4 HOH HOH 340 A HOH 45 4 HOH HOH 341 A HOH 48 4 HOH HOH 342 A HOH 49 4 HOH HOH 343 A HOH 50 4 HOH HOH 344 A HOH 51 4 HOH HOH 345 A HOH 54 4 HOH HOH 346 A HOH 56 4 HOH HOH 347 A HOH 57 4 HOH HOH 348 A HOH 60 4 HOH HOH 349 A HOH 61 4 HOH HOH 350 A HOH 63 4 HOH HOH 351 A HOH 65 4 HOH HOH 352 A HOH 66 4 HOH HOH 353 A HOH 70 4 HOH HOH 354 A HOH 77 4 HOH HOH 355 A HOH 78 4 HOH HOH 356 A HOH 79 4 HOH HOH 357 A HOH 80 4 HOH HOH 358 A HOH 86 4 HOH HOH 359 A HOH 87 4 HOH HOH 360 A HOH 93 4 HOH HOH 361 A HOH 107 4 HOH HOH 362 A HOH 135 4 HOH HOH 363 A HOH 145 4 HOH HOH 364 A HOH 148 4 HOH HOH 365 A HOH 153 4 HOH HOH 366 A HOH 155 4 HOH HOH 367 A HOH 156 4 HOH HOH 368 A HOH 157 4 HOH HOH 369 A HOH 161 4 HOH HOH 370 A HOH 162 4 HOH HOH 371 A HOH 164 4 HOH HOH 372 A HOH 166 4 HOH HOH 373 A HOH 167 4 HOH HOH 374 A HOH 168 4 HOH HOH 375 A HOH 169 4 HOH HOH 376 A HOH 170 4 HOH HOH 377 A HOH 171 4 HOH HOH 378 A HOH 172 4 HOH HOH 379 A HOH 177 4 HOH HOH 380 A HOH 178 4 HOH HOH 381 A HOH 179 4 HOH HOH 382 A HOH 185 4 HOH HOH 383 A HOH 189 4 HOH HOH 384 A HOH 190 4 HOH HOH 385 A HOH 196 4 HOH HOH 386 A HOH 198 4 HOH HOH 387 A HOH 199 4 HOH HOH 388 A HOH 201 4 HOH HOH 389 A HOH 203 4 HOH HOH 390 A HOH 204 4 HOH HOH 391 A HOH 210 4 HOH HOH 392 A HOH 213 4 HOH HOH 393 A HOH 218 4 HOH HOH 394 A HOH 219 4 HOH HOH 395 A HOH 220 4 HOH HOH 396 A HOH 221 4 HOH HOH 397 A HOH 222 4 HOH HOH 398 A HOH 223 4 HOH HOH 399 A HOH 225 4 HOH HOH 400 A HOH 227 4 HOH HOH 401 A HOH 228 4 HOH HOH 402 A HOH 229 4 HOH HOH 403 A HOH 230 4 HOH HOH 404 A HOH 231 4 HOH HOH 405 A 2.500 2.500 39.440 39.440 n 1 -12 A n 2 -11 A n 3 -10 A n 4 -9 A n 5 -8 A n 6 -7 A n 7 -6 A n 8 -5 A n 9 -4 A n 10 -3 A n 11 -2 A n 12 -1 A n 13 0 A ALA 1 n 14 ALA 1 A PRO 2 n 15 PRO 2 A PRO 3 n 16 PRO 3 A THR 4 n 17 THR 4 A LEU 5 n 18 LEU 5 A TRP 6 n 19 TRP 6 A SER 7 n 20 SER 7 A ARG 8 n 21 ARG 8 A VAL 9 n 22 VAL 9 A THR 10 n 23 THR 10 A LYS 11 n 24 LYS 11 A PHE 12 n 25 PHE 12 A GLY 13 n 26 GLY 13 A SER 14 n 27 SER 14 A GLY 15 n 28 GLY 15 A TRP 16 n 29 TRP 16 A GLY 17 n 30 GLY 17 A PHE 18 n 31 PHE 18 A TRP 19 n 32 TRP 19 A VAL 20 n 33 VAL 20 A SER 21 n 34 SER 21 A PRO 22 n 35 PRO 22 A THR 23 n 36 THR 23 A VAL 24 n 37 VAL 24 A PHE 25 n 38 PHE 25 A ILE 26 n 39 ILE 26 A THR 27 n 40 THR 27 A THR 28 n 41 THR 28 A THR 29 n 42 THR 29 A HIS 30 n 43 HIS 30 A VAL 31 n 44 VAL 31 A VAL 32 n 45 VAL 32 A PRO 33 n 46 PRO 33 A THR 34 n 47 THR 34 A GLY 35 n 48 GLY 35 A VAL 36 n 49 VAL 36 A LYS 37 n 50 LYS 37 A GLU 38 n 51 GLU 38 A PHE 39 n 52 PHE 39 A PHE 40 n 53 PHE 40 A GLY 41 n 54 GLY 41 A GLU 42 n 55 GLU 42 A PRO 43 n 56 PRO 43 A LEU 44 n 57 LEU 44 A SER 45 n 58 SER 45 A SER 46 n 59 SER 46 A ILE 47 n 60 ILE 47 A ALA 48 n 61 ALA 48 A ILE 49 n 62 ILE 49 A HIS 50 n 63 HIS 50 A GLN 51 n 64 GLN 51 A ALA 52 n 65 ALA 52 A GLY 53 n 66 GLY 53 A GLU 54 n 67 GLU 54 A PHE 55 n 68 PHE 55 A THR 56 n 69 THR 56 A GLN 57 n 70 GLN 57 A PHE 58 n 71 PHE 58 A ARG 59 n 72 ARG 59 A PHE 60 n 73 PHE 60 A SER 61 n 74 SER 61 A LYS 62 n 75 LYS 62 A LYS 63 n 76 LYS 63 A MET 64 n 77 MET 64 A ARG 65 n 78 ARG 65 A PRO 66 n 79 PRO 66 A ASP 67 n 80 ASP 67 A LEU 68 n 81 LEU 68 A THR 69 n 82 THR 69 A GLY 70 n 83 GLY 70 A MET 71 n 84 MET 71 A VAL 72 n 85 VAL 72 A LEU 73 n 86 LEU 73 A GLU 74 n 87 GLU 74 A GLU 75 n 88 GLU 75 A GLY 76 n 89 GLY 76 A CYS 77 n 90 CYS 77 A PRO 78 n 91 PRO 78 A GLU 79 n 92 GLU 79 A GLY 80 n 93 GLY 80 A THR 81 n 94 THR 81 A VAL 82 n 95 VAL 82 A CYS 83 n 96 CYS 83 A SER 84 n 97 SER 84 A VAL 85 n 98 VAL 85 A LEU 86 n 99 LEU 86 A ILE 87 n 100 ILE 87 A LYS 88 n 101 LYS 88 A ARG 89 n 102 ARG 89 A ASP 90 n 103 ASP 90 A SER 91 n 104 SER 91 A GLY 92 n 105 GLY 92 A GLU 93 n 106 GLU 93 A LEU 94 n 107 LEU 94 A LEU 95 n 108 LEU 95 A PRO 96 n 109 PRO 96 A LEU 97 n 110 LEU 97 A ALA 98 n 111 ALA 98 A VAL 99 n 112 VAL 99 A ARG 100 n 113 ARG 100 A MET 101 n 114 MET 101 A GLY 102 n 115 GLY 102 A ALA 103 n 116 ALA 103 A ILE 104 n 117 ILE 104 A ALA 105 n 118 ALA 105 A SER 106 n 119 SER 106 A MET 107 n 120 MET 107 A ARG 108 n 121 ARG 108 A ILE 109 n 122 ILE 109 A GLN 110 n 123 GLN 110 A GLY 111 n 124 GLY 111 A ARG 112 n 125 ARG 112 A LEU 113 n 126 LEU 113 A VAL 114 n 127 VAL 114 A HIS 115 n 128 HIS 115 A GLY 116 n 129 GLY 116 A GLN 117 n 130 GLN 117 A SER 118 n 131 SER 118 A GLY 119 n 132 GLY 119 A MET 120 n 133 MET 120 A LEU 121 n 134 LEU 121 A LEU 122 n 135 LEU 122 A n 136 123 A n 137 124 A n 138 125 A n 139 126 A n 140 127 A n 141 128 A n 142 129 A n 143 130 A n 144 131 A n 145 132 A GLY 133 n 146 GLY 133 A THR 134 n 147 THR 134 A ILE 135 n 148 ILE 135 A PRO 136 n 149 PRO 136 A GLY 137 n 150 GLY 137 A ASP 138 n 151 ASP 138 A CYS 139 n 152 CYS 139 A GLY 140 n 153 GLY 140 A ALA 141 n 154 ALA 141 A PRO 142 n 155 PRO 142 A TYR 143 n 156 TYR 143 A VAL 144 n 157 VAL 144 A HIS 145 n 158 HIS 145 A LYS 146 n 159 LYS 146 A ARG 147 n 160 ARG 147 A GLY 148 n 161 GLY 148 A ASN 149 n 162 ASN 149 A ASP 150 n 163 ASP 150 A TRP 151 n 164 TRP 151 A VAL 152 n 165 VAL 152 A VAL 153 n 166 VAL 153 A CYS 154 n 167 CYS 154 A GLY 155 n 168 GLY 155 A VAL 156 n 169 VAL 156 A HIS 157 n 170 HIS 157 A ALA 158 n 171 ALA 158 A ALA 159 n 172 ALA 159 A ALA 160 n 173 ALA 160 A THR 161 n 174 THR 161 A LYS 162 n 175 LYS 162 A SER 163 n 176 SER 163 A GLY 164 n 177 GLY 164 A ASN 165 n 178 ASN 165 A THR 166 n 179 THR 166 A VAL 167 n 180 VAL 167 A VAL 168 n 181 VAL 168 A CYS 169 n 182 CYS 169 A ALA 170 n 183 ALA 170 A VAL 171 n 184 VAL 171 A GLN 172 n 185 GLN 172 A ALA 173 n 186 ALA 173 A GLY 174 n 187 GLY 174 A GLU 175 n 188 GLU 175 A GLY 176 n 189 GLY 176 A GLU 177 n 190 GLU 177 A THR 178 n 191 THR 178 A ALA 179 n 192 ALA 179 A LEU 180 n 193 LEU 180 A GLU 181 n 194 GLU 181 A author_and_software_defined_assembly PISA,PQS 2 dimeric 2670 -44 14870 A GLU 79 A OE1 GLU 92 9_555 A MG 302 C MG MG 1_555 A HOH 402 D O HOH 1_555 96.7 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 -0.5000000000 -0.8660254038 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 9_555 -x,-x+y,-z+1/3 crystal symmetry operation 0.0000000000 0.0000000000 17.0830000000 A N THR 10 A N THR 23 A O GLY 17 A O GLY 30 A N PHE 18 A N PHE 31 A O ILE 26 A O ILE 39 A N PHE 25 A N PHE 38 A O PHE 58 A O PHE 71 A O PHE 55 A O PHE 68 A N ALA 52 A N ALA 65 A N PHE 39 A N PHE 52 A O GLU 42 A O GLU 55 A N VAL 72 A N VAL 85 A O VAL 153 A O VAL 166 A N VAL 156 A N VAL 169 A O ALA 170 A O ALA 183 A O CYS 169 A O CYS 182 A N GLN 117 A N GLN 130 A O VAL 114 A O VAL 127 A N MET 107 A N MET 120 A O LEU 95 A O LEU 108 A N ILE 87 A N ILE 100 A N SER 84 A N SER 97 A O VAL 144 A O VAL 157 A N ARG 147 A N ARG 160 A O ASP 150 A O ASP 163 1 A MET -12 A MET 1 1 Y 1 A ALA -11 A ALA 2 1 Y 1 A HIS -10 A HIS 3 1 Y 1 A HIS -9 A HIS 4 1 Y 1 A HIS -8 A HIS 5 1 Y 1 A HIS -7 A HIS 6 1 Y 1 A HIS -6 A HIS 7 1 Y 1 A HIS -5 A HIS 8 1 Y 1 A ASP -4 A ASP 9 1 Y 1 A ASP -3 A ASP 10 1 Y 1 A ASP -2 A ASP 11 1 Y 1 A ASP -1 A ASP 12 1 Y 1 A LYS 0 A LYS 13 1 Y 1 A THR 123 A THR 136 1 Y 1 A GLY 124 A GLY 137 1 Y 1 A ALA 125 A ALA 138 1 Y 1 A ASN 126 A ASN 139 1 Y 1 A ALA 127 A ALA 140 1 Y 1 A LYS 128 A LYS 141 1 Y 1 A GLY 129 A GLY 142 1 Y 1 A MET 130 A MET 143 1 Y 1 A ASP 131 A ASP 144 1 Y 1 A LEU 132 A LEU 145 1 Y 1 A A O O HOH HOH 374 374 1.61 1_555 12_564 1 A A OD2 OD2 ASP ASP 150 150 1.68 1_555 9_554 1 A ASN 165 -140.78 40.25 PROTEIN_REP.PARAM PROTEIN.TOP DNA-RNA_REP.PARAM DNA-RNA.TOP WATER_REP.PARAM WATER.TOP ION.PARAM ION.TOP 25.67 -0.79800 -1.44300 0.00000 -0.79800 0.00000 1.59600 0.246 0.211 0.211 2.20 40.00 1987 20876 18889 9.400 98.7 1 MOLECULAR REPLACEMENT Engh & Huber 52.40 2.20 40.00 103 1381 2 0 1276 0.006 1.25 2.051 1.336 0.333 0.228 2.22 44 494 2.200 39.440 2FYR 11542 1 99.6 0.326 2.20 2.28 5.900 1 data scaling Pflugrath, J.W. jwp@RigakuMSC.com Apr 24 2005 http://www.msc.com/protein/dtrek.html d*TREK package 9.4LDz phasing R. J. Read cimr-phaser@lists.cam.ac.uk http://www-structmed.cimr.cam.ac.uk/phaser/ PHASER program refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu Nov. 1, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.701 Crystal Structure of Norwalk Virus Protease grown in the presence of AEBSF 1 N N 2 N N 3 N N 4 N N A PRO 2 A PRO 15 HELX_P A SER 7 A SER 20 1 1 6 A HIS 30 A HIS 43 HELX_P A VAL 32 A VAL 45 5 2 3 A ILE 135 A ILE 148 HELX_P A CYS 139 A CYS 152 5 3 5 metalc 2.876 A GLU 79 A OE1 GLU 92 9_555 A MG 302 C MG MG 1_555 metalc 2.627 A MG 302 C MG MG 1_555 A HOH 402 D O HOH 1_555 VIRAL PROTEIN protease, norovirus, Norwalk virus, Calicivirus, VIRAL PROTEIN Q83883_9CALI UNP 1 1101 Q83883 1101 1281 2FYR 1 181 Q83883 A 1 14 194 1 initiating methionine MET -12 2FYR A Q83883 UNP 1 1 cloning artifact ALA -11 2FYR A Q83883 UNP 2 1 expression tag HIS -10 2FYR A Q83883 UNP 3 1 expression tag HIS -9 2FYR A Q83883 UNP 4 1 expression tag HIS -8 2FYR A Q83883 UNP 5 1 expression tag HIS -7 2FYR A Q83883 UNP 6 1 expression tag HIS -6 2FYR A Q83883 UNP 7 1 expression tag HIS -5 2FYR A Q83883 UNP 8 1 cloning artifact ASP -4 2FYR A Q83883 UNP 9 1 cloning artifact ASP -3 2FYR A Q83883 UNP 10 1 cloning artifact ASP -2 2FYR A Q83883 UNP 11 1 cloning artifact ASP -1 2FYR A Q83883 UNP 12 1 cloning artifact LYS 0 2FYR A Q83883 UNP 13 5 2 8 anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel anti-parallel A VAL 9 A VAL 22 A PHE 12 A PHE 25 A GLY 15 A GLY 28 A TRP 19 A TRP 32 A VAL 24 A VAL 37 A THR 28 A THR 41 A PHE 55 A PHE 68 A PHE 60 A PHE 73 A ILE 47 A ILE 60 A ALA 52 A ALA 65 A GLU 38 A GLU 51 A PHE 39 A PHE 52 A GLU 42 A GLU 55 A PRO 43 A PRO 56 A VAL 72 A VAL 85 A LEU 73 A LEU 86 A ASP 150 A ASP 163 A ALA 160 A ALA 173 A THR 166 A THR 179 A ALA 170 A ALA 183 A ARG 112 A ARG 125 A LEU 121 A LEU 134 A LEU 94 A LEU 107 A ILE 109 A ILE 122 A VAL 82 A VAL 95 A LYS 88 A LYS 101 A PRO 142 A PRO 155 A ARG 147 A ARG 160 A ASP 150 A ASP 163 A ALA 160 A ALA 173 BINDING SITE FOR RESIDUE CL A 301 A CL 301 Software 3 BINDING SITE FOR RESIDUE MG A 302 A MG 302 Software 4 A SER 7 A SER 20 3 1_555 A LYS 88 A LYS 101 3 1_555 A HOH 333 D HOH 3 11_554 A GLU 79 A GLU 92 4 9_555 A GLY 119 A GLY 132 4 1_555 A MET 120 A MET 133 4 1_555 A HOH 402 D HOH 4 1_555 179 P 65 2 2