0.00579
0.00000
0.00000
0.00000
0.00579
0.00000
0.00000
0.00000
0.00579
0.00000
0.00000
0.00000
Fan, L.
Arvai, A.S.
Tainer, J.A.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
48
90.00
90.00
90.00
172.859
172.859
172.859
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C3 H8 O
60.095
ISOPROPYL ALCOHOL
2-PROPANOL
non-polymer
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
C
N
170
N
C
N
171
N
C
N
172
N
O
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
N
N
182
S
C
N
183
N
C
N
184
N
O
N
185
N
C
N
186
N
C
N
187
N
C
N
188
N
C
N
189
N
O
N
190
N
H
N
191
N
H
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
N
N
204
S
C
N
205
N
C
N
206
N
O
N
207
N
C
N
208
N
C
N
209
N
C
N
210
N
C
N
211
N
N
N
212
N
O
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
N
N
229
S
C
N
230
N
C
N
231
N
O
N
232
N
C
N
233
N
C
N
234
N
S
N
235
N
C
N
236
N
O
N
237
N
H
N
238
N
H
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
N
N
249
S
C
N
250
N
C
N
251
N
O
N
252
N
C
Y
253
N
C
Y
254
N
C
Y
255
N
C
Y
256
N
C
Y
257
N
C
Y
258
N
C
N
259
N
O
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
N
N
272
S
C
N
273
N
C
N
274
N
O
N
275
N
C
N
276
N
C
N
277
N
C
N
278
N
O
N
279
N
H
N
280
N
H
N
281
N
H
N
282
N
H
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
N
N
289
S
C
N
290
N
C
N
291
N
O
N
292
N
C
N
293
N
O
N
294
N
O
N
295
N
H
N
296
N
H
N
297
N
H
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
N
N
303
S
C
N
304
N
C
N
305
N
O
N
306
R
C
N
307
N
O
N
308
N
C
N
309
N
O
N
310
N
H
N
311
N
H
N
312
N
H
N
313
N
H
N
314
N
H
N
315
N
H
N
316
N
H
N
317
N
H
N
318
N
H
N
319
N
N
N
320
S
C
N
321
N
C
N
322
N
O
N
323
N
C
Y
324
N
C
Y
325
N
C
Y
326
N
C
Y
327
N
N
Y
328
N
C
Y
329
N
C
Y
330
N
C
Y
331
N
C
Y
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
N
N
347
S
C
N
348
N
C
N
349
N
O
N
350
N
C
Y
351
N
C
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
O
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
N
375
N
C
N
376
N
C
N
377
N
O
N
378
N
H
N
379
N
H
N
380
N
H
N
381
N
H
N
382
N
H
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
doub
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
doub
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
doub
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
doub
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
Y
246
N
doub
Y
247
N
sing
Y
248
N
sing
N
249
N
sing
Y
250
N
doub
N
251
N
sing
Y
252
N
doub
N
253
N
sing
Y
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
sing
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
doub
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
doub
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
sing
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
doub
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
Y
315
N
doub
Y
316
N
sing
Y
317
N
sing
N
318
N
sing
Y
319
N
doub
Y
320
N
sing
Y
321
N
sing
N
322
N
sing
Y
323
N
sing
Y
324
N
doub
N
325
N
sing
Y
326
N
doub
N
327
N
sing
Y
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
N
338
N
doub
N
339
N
sing
N
340
N
sing
N
341
N
sing
N
342
N
sing
Y
343
N
doub
Y
344
N
sing
Y
345
N
sing
N
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
doub
N
363
N
sing
N
364
N
sing
N
365
N
sing
N
366
N
sing
N
367
N
sing
N
368
N
sing
N
369
N
sing
N
370
N
sing
N
371
N
sing
N
372
N
sing
N
373
N
sing
US
Mol.Cell
MOCEFL
2168
1097-2765
22
27
37
10.1016/j.molcel.2006.02.017
16600867
Conserved XPB Core Structure and Motifs for DNA Unwinding: Implications for Pathway Selection of Transcription or Excision Repair
2006
10.2210/pdb2fzl/pdb
pdb_00002fzl
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
100
1
CCD
2005-10-08
ADSC QUANTUM 315
SINGLE WAVELENGTH
M
x-ray
1
1.115869
1.0
12.3.1
ALS
1.115869
SYNCHROTRON
ALS BEAMLINE 12.3.1
25670.662
DNA repair protein RAD25, XPB
residues 237-434
1
man
polymer
60.095
ISOPROPYL ALCOHOL
1
syn
non-polymer
18.015
water
23
nat
water
no
no
MGSSHHHHHHSSGLVPRGSHMKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDER
AYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRF
RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG
MGSSHHHHHHSSGLVPRGSHMKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDFNKIVMASGYDER
AYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFLIPAITHRTSREEREEILEGFRTGRF
RAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPSKGKKEAVLYELISRG
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Archaeoglobus
Escherichia
Escherichia coli
sample
2234
Archaeoglobus fulgidus
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
PET-28B
1
4.19
70.65
VAPOR DIFFUSION, HANGING DROP
9.8
Ammonium sulphate, isopropanol, CAPS, pH 9.8, VAPOR DIFFUSION, HANGING DROP, temperature 303K
303
software
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Data collection
Database references
Derived calculations
Refinement description
1
0
2006-04-18
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-08-30
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
Crystal structure of full-length Archaeoglobus fulgidus XPB
RCSB
Y
RCSB
2006-02-09
REL
REL
IPA
ISOPROPYL ALCOHOL
HOH
water
2FWR
PDB ENTRY 2FWR
PDB
experimental model
IOH
6001
2
IPA
IPA
6001
A
WAT
1001
3
HOH
HOH
1001
A
WAT
1002
3
HOH
HOH
1002
A
WAT
1003
3
HOH
HOH
1003
A
WAT
1004
3
HOH
HOH
1004
A
WAT
1005
3
HOH
HOH
1005
A
WAT
1006
3
HOH
HOH
1006
A
WAT
1007
3
HOH
HOH
1007
A
WAT
1008
3
HOH
HOH
1008
A
WAT
1009
3
HOH
HOH
1009
A
WAT
1010
3
HOH
HOH
1010
A
WAT
1011
3
HOH
HOH
1011
A
WAT
1012
3
HOH
HOH
1012
A
WAT
1013
3
HOH
HOH
1013
A
WAT
1014
3
HOH
HOH
1014
A
WAT
1015
3
HOH
HOH
1015
A
WAT
1016
3
HOH
HOH
1016
A
WAT
1017
3
HOH
HOH
1017
A
WAT
1018
3
HOH
HOH
1018
A
WAT
1019
3
HOH
HOH
1019
A
WAT
1020
3
HOH
HOH
1020
A
WAT
1021
3
HOH
HOH
1021
A
WAT
1022
3
HOH
HOH
1022
A
WAT
1023
3
HOH
HOH
1023
A
n
1
236
A
n
2
237
A
n
3
238
A
n
4
239
A
n
5
240
A
n
6
241
A
n
7
242
A
n
8
243
A
n
9
244
A
n
10
245
A
n
11
246
A
n
12
247
A
n
13
248
A
n
14
249
A
n
15
250
A
n
16
251
A
n
17
252
A
n
18
253
A
n
19
254
A
n
20
255
A
n
21
256
A
n
22
257
A
HIS
258
n
23
HIS
258
A
LEU
259
n
24
LEU
259
A
ALA
260
n
25
ALA
260
A
LYS
261
n
26
LYS
261
A
TYR
262
n
27
TYR
262
A
THR
263
n
28
THR
263
A
ILE
264
n
29
ILE
264
A
LYS
265
n
30
LYS
265
A
ARG
266
n
31
ARG
266
A
ILE
267
n
32
ILE
267
A
PHE
268
n
33
PHE
268
A
VAL
269
n
34
VAL
269
A
PRO
270
n
35
PRO
270
A
LEU
271
n
36
LEU
271
A
ALA
272
n
37
ALA
272
A
GLU
273
n
38
GLU
273
A
ASP
274
n
39
ASP
274
A
GLU
275
n
40
GLU
275
A
ARG
276
n
41
ARG
276
A
VAL
277
n
42
VAL
277
A
GLU
278
n
43
GLU
278
A
TYR
279
n
44
TYR
279
A
GLU
280
n
45
GLU
280
A
LYS
281
n
46
LYS
281
A
ARG
282
n
47
ARG
282
A
GLU
283
n
48
GLU
283
A
LYS
284
n
49
LYS
284
A
VAL
285
n
50
VAL
285
A
TYR
286
n
51
TYR
286
A
LYS
287
n
52
LYS
287
A
GLN
288
n
53
GLN
288
A
PHE
289
n
54
PHE
289
A
LEU
290
n
55
LEU
290
A
ARG
291
n
56
ARG
291
A
ALA
292
n
57
ALA
292
A
ARG
293
n
58
ARG
293
A
GLY
294
n
59
GLY
294
A
ILE
295
n
60
ILE
295
A
THR
296
n
61
THR
296
A
LEU
297
n
62
LEU
297
A
ARG
298
n
63
ARG
298
A
ARG
299
n
64
ARG
299
A
ALA
300
n
65
ALA
300
A
GLU
301
n
66
GLU
301
A
ASP
302
n
67
ASP
302
A
PHE
303
n
68
PHE
303
A
ASN
304
n
69
ASN
304
A
LYS
305
n
70
LYS
305
A
ILE
306
n
71
ILE
306
A
VAL
307
n
72
VAL
307
A
MET
308
n
73
MET
308
A
ALA
309
n
74
ALA
309
A
SER
310
n
75
SER
310
A
GLY
311
n
76
GLY
311
A
TYR
312
n
77
TYR
312
A
ASP
313
n
78
ASP
313
A
GLU
314
n
79
GLU
314
A
ARG
315
n
80
ARG
315
A
ALA
316
n
81
ALA
316
A
TYR
317
n
82
TYR
317
A
GLU
318
n
83
GLU
318
A
ALA
319
n
84
ALA
319
A
LEU
320
n
85
LEU
320
A
ARG
321
n
86
ARG
321
A
ALA
322
n
87
ALA
322
A
TRP
323
n
88
TRP
323
A
GLU
324
n
89
GLU
324
A
GLU
325
n
90
GLU
325
A
ALA
326
n
91
ALA
326
A
ARG
327
n
92
ARG
327
A
ARG
328
n
93
ARG
328
A
ILE
329
n
94
ILE
329
A
ALA
330
n
95
ALA
330
A
PHE
331
n
96
PHE
331
A
ASN
332
n
97
ASN
332
A
SER
333
n
98
SER
333
A
LYS
334
n
99
LYS
334
A
ASN
335
n
100
ASN
335
A
LYS
336
n
101
LYS
336
A
ILE
337
n
102
ILE
337
A
ARG
338
n
103
ARG
338
A
LYS
339
n
104
LYS
339
A
LEU
340
n
105
LEU
340
A
ARG
341
n
106
ARG
341
A
GLU
342
n
107
GLU
342
A
ILE
343
n
108
ILE
343
A
LEU
344
n
109
LEU
344
A
GLU
345
n
110
GLU
345
A
ARG
346
n
111
ARG
346
A
HIS
347
n
112
HIS
347
A
ARG
348
n
113
ARG
348
A
LYS
349
n
114
LYS
349
A
ASP
350
n
115
ASP
350
A
LYS
351
n
116
LYS
351
A
ILE
352
n
117
ILE
352
A
ILE
353
n
118
ILE
353
A
ILE
354
n
119
ILE
354
A
PHE
355
n
120
PHE
355
A
THR
356
n
121
THR
356
A
ARG
357
n
122
ARG
357
A
HIS
358
n
123
HIS
358
A
ASN
359
n
124
ASN
359
A
GLU
360
n
125
GLU
360
A
LEU
361
n
126
LEU
361
A
VAL
362
n
127
VAL
362
A
TYR
363
n
128
TYR
363
A
ARG
364
n
129
ARG
364
A
ILE
365
n
130
ILE
365
A
SER
366
n
131
SER
366
A
LYS
367
n
132
LYS
367
A
VAL
368
n
133
VAL
368
A
PHE
369
n
134
PHE
369
A
LEU
370
n
135
LEU
370
A
ILE
371
n
136
ILE
371
A
PRO
372
n
137
PRO
372
A
ALA
373
n
138
ALA
373
A
ILE
374
n
139
ILE
374
A
THR
375
n
140
THR
375
A
HIS
376
n
141
HIS
376
A
ARG
377
n
142
ARG
377
A
THR
378
n
143
THR
378
A
SER
379
n
144
SER
379
A
ARG
380
n
145
ARG
380
A
GLU
381
n
146
GLU
381
A
GLU
382
n
147
GLU
382
A
ARG
383
n
148
ARG
383
A
GLU
384
n
149
GLU
384
A
GLU
385
n
150
GLU
385
A
ILE
386
n
151
ILE
386
A
LEU
387
n
152
LEU
387
A
GLU
388
n
153
GLU
388
A
GLY
389
n
154
GLY
389
A
PHE
390
n
155
PHE
390
A
ARG
391
n
156
ARG
391
A
THR
392
n
157
THR
392
A
GLY
393
n
158
GLY
393
A
ARG
394
n
159
ARG
394
A
PHE
395
n
160
PHE
395
A
ARG
396
n
161
ARG
396
A
ALA
397
n
162
ALA
397
A
ILE
398
n
163
ILE
398
A
VAL
399
n
164
VAL
399
A
SER
400
n
165
SER
400
A
SER
401
n
166
SER
401
A
GLN
402
n
167
GLN
402
A
VAL
403
n
168
VAL
403
A
LEU
404
n
169
LEU
404
A
ASP
405
n
170
ASP
405
A
GLU
406
n
171
GLU
406
A
GLY
407
n
172
GLY
407
A
ILE
408
n
173
ILE
408
A
ASP
409
n
174
ASP
409
A
VAL
410
n
175
VAL
410
A
PRO
411
n
176
PRO
411
A
ASP
412
n
177
ASP
412
A
ALA
413
n
178
ALA
413
A
ASN
414
n
179
ASN
414
A
VAL
415
n
180
VAL
415
A
GLY
416
n
181
GLY
416
A
VAL
417
n
182
VAL
417
A
ILE
418
n
183
ILE
418
A
MET
419
n
184
MET
419
A
SER
420
n
185
SER
420
A
GLY
421
n
186
GLY
421
A
SER
422
n
187
SER
422
A
GLY
423
n
188
GLY
423
A
SER
424
n
189
SER
424
A
ALA
425
n
190
ALA
425
A
ARG
426
n
191
ARG
426
A
GLU
427
n
192
GLU
427
A
TYR
428
n
193
TYR
428
A
ILE
429
n
194
ILE
429
A
GLN
430
n
195
GLN
430
A
ARG
431
n
196
ARG
431
A
LEU
432
n
197
LEU
432
A
GLY
433
n
198
GLY
433
A
ARG
434
n
199
ARG
434
A
ILE
435
n
200
ILE
435
A
LEU
436
n
201
LEU
436
A
ARG
437
n
202
ARG
437
A
PRO
438
n
203
PRO
438
A
SER
439
n
204
SER
439
A
LYS
440
n
205
LYS
440
A
GLY
441
n
206
GLY
441
A
LYS
442
n
207
LYS
442
A
LYS
443
n
208
LYS
443
A
GLU
444
n
209
GLU
444
A
ALA
445
n
210
ALA
445
A
VAL
446
n
211
VAL
446
A
LEU
447
n
212
LEU
447
A
TYR
448
n
213
TYR
448
A
GLU
449
n
214
GLU
449
A
LEU
450
n
215
LEU
450
A
ILE
451
n
216
ILE
451
A
SER
452
n
217
SER
452
A
ARG
453
n
218
ARG
453
A
GLY
454
n
219
GLY
454
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
LYS
265
A
N
LYS
30
A
O
LEU
447
A
O
LEU
212
A
O
TYR
448
A
O
TYR
213
A
N
GLY
416
A
N
GLY
181
A
O
VAL
417
A
O
VAL
182
A
N
PHE
355
A
N
PHE
120
A
N
ILE
354
A
N
ILE
119
A
O
ILE
398
A
O
ILE
163
A
O
VAL
399
A
O
VAL
164
A
N
ILE
374
A
N
ILE
139
1
A
MET
236
A
MET
1
1
Y
1
A
GLY
237
A
GLY
2
1
Y
1
A
SER
238
A
SER
3
1
Y
1
A
SER
239
A
SER
4
1
Y
1
A
HIS
240
A
HIS
5
1
Y
1
A
HIS
241
A
HIS
6
1
Y
1
A
HIS
242
A
HIS
7
1
Y
1
A
HIS
243
A
HIS
8
1
Y
1
A
HIS
244
A
HIS
9
1
Y
1
A
HIS
245
A
HIS
10
1
Y
1
A
SER
246
A
SER
11
1
Y
1
A
SER
247
A
SER
12
1
Y
1
A
GLY
248
A
GLY
13
1
Y
1
A
LEU
249
A
LEU
14
1
Y
1
A
VAL
250
A
VAL
15
1
Y
1
A
PRO
251
A
PRO
16
1
Y
1
A
ARG
252
A
ARG
17
1
Y
1
A
GLY
253
A
GLY
18
1
Y
1
A
SER
254
A
SER
19
1
Y
1
A
HIS
255
A
HIS
20
1
Y
1
A
MET
256
A
MET
21
1
Y
1
A
LYS
257
A
LYS
22
1
Y
1
A
ALA
260
-141.05
-5.17
1
A
LYS
261
-160.24
67.38
1
A
GLU
273
-58.38
-71.54
1
A
GLU
301
53.05
-33.18
1
A
LEU
370
-61.22
62.48
1
A
THR
375
-123.47
-169.41
1
A
HIS
376
-90.43
54.24
1
A
ARG
377
-156.87
-99.73
1
A
THR
378
38.24
-89.60
1
A
SER
379
168.62
-155.35
1
A
ARG
383
-45.08
-71.21
1
A
ARG
391
-67.14
1.20
1
A
ARG
394
64.62
-71.90
1
A
VAL
410
56.25
128.40
1
A
SER
439
-51.99
170.52
1
A
LYS
442
76.48
-44.97
1
A
ALA
445
-177.76
148.56
1
A
ARG
453
-168.91
-108.86
protein_rep.param
protein.top
water.param
water.top
ion.param
ion.top
ioh.par
ioh.top
73.500
0.000
0.000
0.000
0.000
0.000
0.000
0.291
0.013
0.249
0.2481
0.2481
2.9
50.0
490
9267
9267
5.300
92.400
RANDOM
77348.844
0.000
1
RESTRAINED
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
PDB ENTRY 2FWR
Engh & Huber
FLAT MODEL
55.347
0.355
0.530
0.390
5.000
0.750
0.520
2.9
50.0
27
1665
0
0
1638
0.009
1.400
21.200
0.710
1.500
1.500
2.750
2.000
2.020
2.000
3.500
2.500
0.435
0.050
0.36
3.080
77
1327
1404
6
5.500
86.600
2.900
50.000
2FZL
10024
10024
-3
-3
0.068
0.890
1
55.18
25.500
100.000
0.629
2.90
3.00
5.06
978
0.537
25.60
100.0
100.00
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
refinement
Axel T. Brunger
axel.brunger@yale.edu
Fortran_77
http://cns.csb.yale.edu/v1.1/
CNS
package
1.1
data extraction
PDB
sw-help@rcsb.rutgers.edu
Nov. 1, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.701
data collection
Blu-Ice
phasing
AMoRE
Structure of C-terminal domain of Archaeoglobus fulgidus XPB
1
N
N
2
N
N
3
N
N
A
ALA
272
A
ALA
37
HELX_P
A
ARG
293
A
ARG
58
1
1
22
A
THR
296
A
THR
61
HELX_P
A
ALA
300
A
ALA
65
5
2
5
A
GLU
301
A
GLU
66
HELX_P
A
SER
310
A
SER
75
1
3
10
A
ASP
313
A
ASP
78
HELX_P
A
ASN
332
A
ASN
97
1
4
20
A
SER
333
A
SER
98
HELX_P
A
HIS
347
A
HIS
112
1
5
15
A
HIS
358
A
HIS
123
HELX_P
A
PHE
369
A
PHE
134
1
6
12
A
ARG
380
A
ARG
145
HELX_P
A
ARG
391
A
ARG
156
1
7
12
A
ALA
425
A
ALA
190
HELX_P
A
LEU
436
A
LEU
201
1
8
12
DNA BINDING PROTEIN
XPB, nucleotide excision repair, dna repair, DNA BINDING PROTEIN
O29889_ARCFU
UNP
1
237
O29889
237
434
2FZL
257
454
O29889
A
1
22
219
1
initiating methionine
MET
236
2FZL
A
O29889
UNP
1
1
cloning artifact
GLY
237
2FZL
A
O29889
UNP
2
1
cloning artifact
SER
238
2FZL
A
O29889
UNP
3
1
cloning artifact
SER
239
2FZL
A
O29889
UNP
4
1
expression tag
HIS
240
2FZL
A
O29889
UNP
5
1
expression tag
HIS
241
2FZL
A
O29889
UNP
6
1
expression tag
HIS
242
2FZL
A
O29889
UNP
7
1
expression tag
HIS
243
2FZL
A
O29889
UNP
8
1
expression tag
HIS
244
2FZL
A
O29889
UNP
9
1
expression tag
HIS
245
2FZL
A
O29889
UNP
10
1
cloning artifact
SER
246
2FZL
A
O29889
UNP
11
1
cloning artifact
SER
247
2FZL
A
O29889
UNP
12
1
cloning artifact
GLY
248
2FZL
A
O29889
UNP
13
1
cloning artifact
LEU
249
2FZL
A
O29889
UNP
14
1
cloning artifact
VAL
250
2FZL
A
O29889
UNP
15
1
cloning artifact
PRO
251
2FZL
A
O29889
UNP
16
1
cloning artifact
ARG
252
2FZL
A
O29889
UNP
17
1
cloning artifact
GLY
253
2FZL
A
O29889
UNP
18
1
cloning artifact
SER
254
2FZL
A
O29889
UNP
19
1
cloning artifact
HIS
255
2FZL
A
O29889
UNP
20
1
cloning artifact
MET
256
2FZL
A
O29889
UNP
21
6
parallel
parallel
parallel
parallel
parallel
A
LYS
261
A
LYS
26
A
PRO
270
A
PRO
35
A
GLU
444
A
GLU
209
A
ARG
453
A
ARG
218
A
VAL
415
A
VAL
180
A
MET
419
A
MET
184
A
ILE
352
A
ILE
117
A
PHE
355
A
PHE
120
A
ALA
397
A
ALA
162
A
SER
400
A
SER
165
A
ALA
373
A
ALA
138
A
ILE
374
A
ILE
139
BINDING SITE FOR RESIDUE IPA A 6001
A
IPA
6001
Software
3
A
TYR
279
A
TYR
44
3
1_555
A
TRP
323
A
TRP
88
3
1_555
A
ARG
327
A
ARG
92
3
1_555
214
I 41 3 2