0.036868
0.000000
0.000000
0.000000
0.018855
0.000000
0.000000
0.000000
0.011459
0.00000
0.00000
0.00000
Ferraro, D.M.
Ferraro, D.J.
Ramaswamy, S.
Robertson, A.D.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
8
90.00
90.00
90.00
27.124
53.035
87.268
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
C
Y
316
N
C
Y
317
N
C
N
318
N
O
N
319
N
O
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
N
N
332
S
C
N
333
N
C
N
334
N
O
N
335
N
C
N
336
N
C
N
337
N
C
N
338
N
O
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
H
N
344
N
H
N
345
N
H
N
346
N
H
N
347
N
H
N
348
N
H
N
349
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
N
309
N
sing
Y
310
N
doub
N
311
N
sing
Y
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
doub
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
sing
N
334
N
sing
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
359
390
402
10.1016/j.jmb.2006.03.047
16647719
Structures of Ubiquitin Insertion Mutants Support Site-specific Reflex Response to Insertions Hypothesis.
2006
10.2210/pdb2gbj/pdb
pdb_00002gbj
100
1
180 cm lens focused ccd
CCD
2004-12-17
NOIR-1
Si(111) double crystal
SINGLE WAVELENGTH
M
x-ray
1
1.12711
1.0
4.2.2
ALS
1.12711
SYNCHROTRON
ALS BEAMLINE 4.2.2
9033.244
Ubiquitin
2
man
polymer
18.015
water
151
nat
water
no
no
MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGG
MQIFVKTLTGGGGGGGGGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLR
LRGG
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
Escherichia coli
sample
9606
Homo sapiens
469008
Escherichia coli BL21(DE3)
BL21(DE3)
PLASMID
pRS
1
1.736554
29.170057
VAPOR DIFFUSION, HANGING DROP
5.9
27-32% PEG 4000, 50 mM Sodium Cacodylate, pH 5.9, VAPOR DIFFUSION, HANGING DROP, temperature 279.15K
279.15
chem_comp_atom
chem_comp_bond
database_2
pdbx_initial_refinement_model
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Refinement description
1
0
2006-05-16
1
1
2008-05-01
1
2
2011-07-13
1
3
2023-08-30
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
Crystal Structure of the 9-10 MoaD Insertion Mutant of Ubiquitin
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of the same protein
Crystal Structure of the 35-36 8 Glycine Insertion Mutant of the same protein
Crystal Structure of the 35-36 MoaD Insertion Mutant of the same protein
RCSB
Y
RCSB
2006-03-10
REL
REL
HOH
water
1UBQ
PDB ENTRY 1UBQ
PDB
experimental model
HOH
1
2
HOH
HOH
85
A
HOH
2
2
HOH
HOH
86
A
HOH
3
2
HOH
HOH
87
A
HOH
5
2
HOH
HOH
88
A
HOH
6
2
HOH
HOH
89
A
HOH
7
2
HOH
HOH
90
A
HOH
8
2
HOH
HOH
91
A
HOH
9
2
HOH
HOH
92
A
HOH
11
2
HOH
HOH
93
A
HOH
14
2
HOH
HOH
94
A
HOH
15
2
HOH
HOH
95
A
HOH
17
2
HOH
HOH
96
A
HOH
18
2
HOH
HOH
97
A
HOH
19
2
HOH
HOH
98
A
HOH
21
2
HOH
HOH
99
A
HOH
22
2
HOH
HOH
100
A
HOH
24
2
HOH
HOH
101
A
HOH
25
2
HOH
HOH
102
A
HOH
26
2
HOH
HOH
103
A
HOH
27
2
HOH
HOH
104
A
HOH
30
2
HOH
HOH
105
A
HOH
31
2
HOH
HOH
106
A
HOH
32
2
HOH
HOH
107
A
HOH
33
2
HOH
HOH
108
A
HOH
34
2
HOH
HOH
109
A
HOH
36
2
HOH
HOH
110
A
HOH
39
2
HOH
HOH
111
A
HOH
43
2
HOH
HOH
112
A
HOH
44
2
HOH
HOH
113
A
HOH
47
2
HOH
HOH
114
A
HOH
48
2
HOH
HOH
115
A
HOH
50
2
HOH
HOH
116
A
HOH
51
2
HOH
HOH
117
A
HOH
52
2
HOH
HOH
118
A
HOH
55
2
HOH
HOH
119
A
HOH
56
2
HOH
HOH
120
A
HOH
57
2
HOH
HOH
121
A
HOH
59
2
HOH
HOH
122
A
HOH
61
2
HOH
HOH
123
A
HOH
64
2
HOH
HOH
124
A
HOH
66
2
HOH
HOH
125
A
HOH
67
2
HOH
HOH
126
A
HOH
71
2
HOH
HOH
127
A
HOH
72
2
HOH
HOH
128
A
HOH
73
2
HOH
HOH
129
A
HOH
74
2
HOH
HOH
130
A
HOH
75
2
HOH
HOH
131
A
HOH
78
2
HOH
HOH
132
A
HOH
79
2
HOH
HOH
133
A
HOH
81
2
HOH
HOH
134
A
HOH
83
2
HOH
HOH
135
A
HOH
84
2
HOH
HOH
136
A
HOH
85
2
HOH
HOH
137
A
HOH
86
2
HOH
HOH
138
A
HOH
90
2
HOH
HOH
139
A
HOH
93
2
HOH
HOH
140
A
HOH
94
2
HOH
HOH
141
A
HOH
97
2
HOH
HOH
142
A
HOH
98
2
HOH
HOH
143
A
HOH
101
2
HOH
HOH
144
A
HOH
103
2
HOH
HOH
145
A
HOH
104
2
HOH
HOH
146
A
HOH
106
2
HOH
HOH
147
A
HOH
108
2
HOH
HOH
148
A
HOH
109
2
HOH
HOH
149
A
HOH
110
2
HOH
HOH
150
A
HOH
111
2
HOH
HOH
151
A
HOH
112
2
HOH
HOH
152
A
HOH
120
2
HOH
HOH
153
A
HOH
123
2
HOH
HOH
154
A
HOH
124
2
HOH
HOH
155
A
HOH
130
2
HOH
HOH
156
A
HOH
132
2
HOH
HOH
157
A
HOH
135
2
HOH
HOH
158
A
HOH
136
2
HOH
HOH
159
A
HOH
138
2
HOH
HOH
160
A
HOH
140
2
HOH
HOH
161
A
HOH
146
2
HOH
HOH
162
A
HOH
148
2
HOH
HOH
163
A
HOH
151
2
HOH
HOH
164
A
HOH
4
2
HOH
HOH
85
B
HOH
10
2
HOH
HOH
86
B
HOH
12
2
HOH
HOH
87
B
HOH
13
2
HOH
HOH
88
B
HOH
16
2
HOH
HOH
89
B
HOH
20
2
HOH
HOH
90
B
HOH
23
2
HOH
HOH
91
B
HOH
28
2
HOH
HOH
92
B
HOH
29
2
HOH
HOH
93
B
HOH
35
2
HOH
HOH
94
B
HOH
37
2
HOH
HOH
95
B
HOH
38
2
HOH
HOH
96
B
HOH
40
2
HOH
HOH
97
B
HOH
41
2
HOH
HOH
98
B
HOH
42
2
HOH
HOH
99
B
HOH
45
2
HOH
HOH
100
B
HOH
46
2
HOH
HOH
101
B
HOH
49
2
HOH
HOH
102
B
HOH
53
2
HOH
HOH
103
B
HOH
54
2
HOH
HOH
104
B
HOH
58
2
HOH
HOH
105
B
HOH
60
2
HOH
HOH
106
B
HOH
62
2
HOH
HOH
107
B
HOH
63
2
HOH
HOH
108
B
HOH
65
2
HOH
HOH
109
B
HOH
68
2
HOH
HOH
110
B
HOH
69
2
HOH
HOH
111
B
HOH
70
2
HOH
HOH
112
B
HOH
76
2
HOH
HOH
113
B
HOH
77
2
HOH
HOH
114
B
HOH
80
2
HOH
HOH
115
B
HOH
82
2
HOH
HOH
116
B
HOH
87
2
HOH
HOH
117
B
HOH
89
2
HOH
HOH
118
B
HOH
91
2
HOH
HOH
119
B
HOH
92
2
HOH
HOH
120
B
HOH
95
2
HOH
HOH
121
B
HOH
96
2
HOH
HOH
122
B
HOH
99
2
HOH
HOH
123
B
HOH
100
2
HOH
HOH
124
B
HOH
102
2
HOH
HOH
125
B
HOH
105
2
HOH
HOH
126
B
HOH
107
2
HOH
HOH
127
B
HOH
113
2
HOH
HOH
128
B
HOH
114
2
HOH
HOH
129
B
HOH
115
2
HOH
HOH
130
B
HOH
116
2
HOH
HOH
131
B
HOH
117
2
HOH
HOH
132
B
HOH
118
2
HOH
HOH
133
B
HOH
121
2
HOH
HOH
134
B
HOH
122
2
HOH
HOH
135
B
HOH
125
2
HOH
HOH
136
B
HOH
126
2
HOH
HOH
137
B
HOH
128
2
HOH
HOH
138
B
HOH
129
2
HOH
HOH
139
B
HOH
133
2
HOH
HOH
140
B
HOH
134
2
HOH
HOH
141
B
HOH
137
2
HOH
HOH
142
B
HOH
139
2
HOH
HOH
143
B
HOH
141
2
HOH
HOH
144
B
HOH
142
2
HOH
HOH
145
B
HOH
143
2
HOH
HOH
146
B
HOH
144
2
HOH
HOH
147
B
HOH
145
2
HOH
HOH
148
B
HOH
147
2
HOH
HOH
149
B
HOH
149
2
HOH
HOH
150
B
HOH
150
2
HOH
HOH
151
B
HOH
153
2
HOH
HOH
152
B
HOH
154
2
HOH
HOH
153
B
HOH
156
2
HOH
HOH
154
B
HOH
160
2
HOH
HOH
155
B
0.549
0.447
0.282
0.257
3.000
3.000
15.000
15.000
MET
1
n
1
MET
1
A
GLN
2
n
2
GLN
2
A
ILE
3
n
3
ILE
3
A
PHE
4
n
4
PHE
4
A
VAL
5
n
5
VAL
5
A
LYS
6
n
6
LYS
6
A
THR
7
n
7
THR
7
A
LEU
8
n
8
LEU
8
A
THR
9
n
9
THR
9
A
GLY
10
n
10
GLY
10
A
GLY
11
n
11
GLY
11
A
GLY
12
n
12
GLY
12
A
GLY
13
n
13
GLY
13
A
GLY
14
n
14
GLY
14
A
GLY
15
n
15
GLY
15
A
GLY
16
n
16
GLY
16
A
GLY
17
n
17
GLY
17
A
GLY
18
n
18
GLY
18
A
LYS
19
n
19
LYS
19
A
THR
20
n
20
THR
20
A
ILE
21
n
21
ILE
21
A
THR
22
n
22
THR
22
A
LEU
23
n
23
LEU
23
A
GLU
24
n
24
GLU
24
A
VAL
25
n
25
VAL
25
A
GLU
26
n
26
GLU
26
A
PRO
27
n
27
PRO
27
A
SER
28
n
28
SER
28
A
ASP
29
n
29
ASP
29
A
THR
30
n
30
THR
30
A
ILE
31
n
31
ILE
31
A
GLU
32
n
32
GLU
32
A
ASN
33
n
33
ASN
33
A
VAL
34
n
34
VAL
34
A
LYS
35
n
35
LYS
35
A
ALA
36
n
36
ALA
36
A
LYS
37
n
37
LYS
37
A
ILE
38
n
38
ILE
38
A
GLN
39
n
39
GLN
39
A
ASP
40
n
40
ASP
40
A
LYS
41
n
41
LYS
41
A
GLU
42
n
42
GLU
42
A
GLY
43
n
43
GLY
43
A
ILE
44
n
44
ILE
44
A
PRO
45
n
45
PRO
45
A
PRO
46
n
46
PRO
46
A
ASP
47
n
47
ASP
47
A
GLN
48
n
48
GLN
48
A
GLN
49
n
49
GLN
49
A
ARG
50
n
50
ARG
50
A
LEU
51
n
51
LEU
51
A
ILE
52
n
52
ILE
52
A
PHE
53
n
53
PHE
53
A
ALA
54
n
54
ALA
54
A
GLY
55
n
55
GLY
55
A
LYS
56
n
56
LYS
56
A
GLN
57
n
57
GLN
57
A
LEU
58
n
58
LEU
58
A
GLU
59
n
59
GLU
59
A
ASP
60
n
60
ASP
60
A
GLY
61
n
61
GLY
61
A
ARG
62
n
62
ARG
62
A
THR
63
n
63
THR
63
A
LEU
64
n
64
LEU
64
A
SER
65
n
65
SER
65
A
ASP
66
n
66
ASP
66
A
TYR
67
n
67
TYR
67
A
ASN
68
n
68
ASN
68
A
ILE
69
n
69
ILE
69
A
GLN
70
n
70
GLN
70
A
LYS
71
n
71
LYS
71
A
GLU
72
n
72
GLU
72
A
SER
73
n
73
SER
73
A
THR
74
n
74
THR
74
A
LEU
75
n
75
LEU
75
A
HIS
76
n
76
HIS
76
A
LEU
77
n
77
LEU
77
A
VAL
78
n
78
VAL
78
A
LEU
79
n
79
LEU
79
A
ARG
80
n
80
ARG
80
A
LEU
81
n
81
LEU
81
A
n
82
82
A
n
83
83
A
n
84
84
A
MET
1
n
1
MET
1
B
GLN
2
n
2
GLN
2
B
ILE
3
n
3
ILE
3
B
PHE
4
n
4
PHE
4
B
VAL
5
n
5
VAL
5
B
LYS
6
n
6
LYS
6
B
THR
7
n
7
THR
7
B
LEU
8
n
8
LEU
8
B
THR
9
n
9
THR
9
B
GLY
10
n
10
GLY
10
B
GLY
11
n
11
GLY
11
B
GLY
12
n
12
GLY
12
B
GLY
13
n
13
GLY
13
B
GLY
14
n
14
GLY
14
B
GLY
15
n
15
GLY
15
B
GLY
16
n
16
GLY
16
B
GLY
17
n
17
GLY
17
B
GLY
18
n
18
GLY
18
B
LYS
19
n
19
LYS
19
B
THR
20
n
20
THR
20
B
ILE
21
n
21
ILE
21
B
THR
22
n
22
THR
22
B
LEU
23
n
23
LEU
23
B
GLU
24
n
24
GLU
24
B
VAL
25
n
25
VAL
25
B
GLU
26
n
26
GLU
26
B
PRO
27
n
27
PRO
27
B
SER
28
n
28
SER
28
B
ASP
29
n
29
ASP
29
B
THR
30
n
30
THR
30
B
ILE
31
n
31
ILE
31
B
GLU
32
n
32
GLU
32
B
ASN
33
n
33
ASN
33
B
VAL
34
n
34
VAL
34
B
LYS
35
n
35
LYS
35
B
ALA
36
n
36
ALA
36
B
LYS
37
n
37
LYS
37
B
ILE
38
n
38
ILE
38
B
GLN
39
n
39
GLN
39
B
ASP
40
n
40
ASP
40
B
LYS
41
n
41
LYS
41
B
GLU
42
n
42
GLU
42
B
GLY
43
n
43
GLY
43
B
ILE
44
n
44
ILE
44
B
PRO
45
n
45
PRO
45
B
PRO
46
n
46
PRO
46
B
ASP
47
n
47
ASP
47
B
GLN
48
n
48
GLN
48
B
GLN
49
n
49
GLN
49
B
ARG
50
n
50
ARG
50
B
LEU
51
n
51
LEU
51
B
ILE
52
n
52
ILE
52
B
PHE
53
n
53
PHE
53
B
ALA
54
n
54
ALA
54
B
GLY
55
n
55
GLY
55
B
LYS
56
n
56
LYS
56
B
GLN
57
n
57
GLN
57
B
LEU
58
n
58
LEU
58
B
GLU
59
n
59
GLU
59
B
ASP
60
n
60
ASP
60
B
GLY
61
n
61
GLY
61
B
ARG
62
n
62
ARG
62
B
THR
63
n
63
THR
63
B
LEU
64
n
64
LEU
64
B
SER
65
n
65
SER
65
B
ASP
66
n
66
ASP
66
B
TYR
67
n
67
TYR
67
B
ASN
68
n
68
ASN
68
B
ILE
69
n
69
ILE
69
B
GLN
70
n
70
GLN
70
B
LYS
71
n
71
LYS
71
B
GLU
72
n
72
GLU
72
B
SER
73
n
73
SER
73
B
THR
74
n
74
THR
74
B
LEU
75
n
75
LEU
75
B
HIS
76
n
76
HIS
76
B
LEU
77
n
77
LEU
77
B
VAL
78
n
78
VAL
78
B
LEU
79
n
79
LEU
79
B
ARG
80
n
80
ARG
80
B
LEU
81
n
81
LEU
81
B
ARG
82
n
82
ARG
82
B
GLY
83
n
83
GLY
83
B
GLY
84
n
84
GLY
84
B
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
LEU
23
A
O
LEU
23
A
N
ILE
3
A
N
ILE
3
A
N
PHE
4
A
N
PHE
4
A
O
LEU
75
A
O
LEU
75
A
O
VAL
78
A
O
VAL
78
A
N
ARG
50
A
N
ARG
50
A
N
PHE
53
A
N
PHE
53
A
O
LYS
56
A
O
LYS
56
B
O
ILE
21
B
O
ILE
21
B
N
VAL
5
B
N
VAL
5
B
N
PHE
4
B
N
PHE
4
B
O
LEU
75
B
O
LEU
75
B
O
HIS
76
B
O
HIS
76
B
N
ILE
52
B
N
ILE
52
B
N
PHE
53
B
N
PHE
53
B
O
LYS
56
B
O
LYS
56
1
A
ARG
82
A
ARG
82
1
Y
1
A
GLY
83
A
GLY
83
1
Y
1
A
GLY
84
A
GLY
84
1
Y
33.353
0.000
0.000
0.000
-0.590
0.000
0.600
0.962
0.946
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.22589
0.18805
0.18998
0.18998
1.350
33.691
1405
28499
27864
5.000
97.780
2.372
0.047
RANDOM
1
THROUGHOUT
0.00
MOLECULAR REPLACEMENT
0.081
0.072
0.800
0.800
1.400
PDB ENTRY 1UBQ
MAXIMUM LIKELIHOOD
BABINET MODEL WITH MASK
1.350
33.691
151
1410
0
0
1259
0.012
0.022
1272
0.001
0.020
893
1.416
1.998
1706
0.860
3.000
2207
6.042
5.000
163
37.530
26.000
55
13.379
15.000
251
20.878
15.000
7
0.083
0.200
195
0.005
0.020
1402
0.001
0.020
217
0.206
0.200
204
0.188
0.200
932
0.165
0.200
617
0.080
0.200
724
0.165
0.200
106
0.040
0.200
1
0.207
0.200
24
0.243
0.200
86
0.147
0.200
26
1.657
1.500
1054
0.646
1.500
348
1.946
2.000
1294
3.215
3.000
507
4.494
4.500
412
1.921
3.000
1561
2.737
3.000
1260
0.309
0.268
1.385
87
1757
1844
20
89.650
1.350
33.691
2GBJ
28499
27867
0.00
0.00
0.068
0.970
1
10.800
4.980
1050
97.800
0.503
1.35
1.40
2.4
10991
2511
2511
0.850
4.37
90.6
90.60
data scaling
Pflugrath, J.W.
jwp@RigakuMSC.com
Sep 29 2005
http://www.msc.com/protein/dtrek.html
d*TREK
package
9.5LDz
phasing
Jorge Navaza
ccp4@dl.ac.uk
Fortran
http://www.ccp4.ac.uk/main.html
AMoRE
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
Nov. 1, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.701
data collection
Blu-Ice
Crystal Structure of the 9-10 8 Glycine Insertion Mutant of Ubiquitin.
1
N
N
1
N
N
2
N
N
2
N
N
The monomer is believed to be the active biological assembly.
A
THR
30
A
THR
30
HELX_P
A
GLY
43
A
GLY
43
1
1
14
A
PRO
45
A
PRO
45
HELX_P
A
ASP
47
A
ASP
47
5
2
3
A
LEU
64
A
LEU
64
HELX_P
A
ASN
68
A
ASN
68
5
3
5
B
THR
30
B
THR
30
HELX_P
B
GLY
43
B
GLY
43
1
4
14
B
PRO
45
B
PRO
45
HELX_P
B
ASP
47
B
ASP
47
5
5
3
B
LEU
64
B
LEU
64
HELX_P
B
ASN
68
B
ASN
68
5
6
5
PROTEIN BINDING
LOOP INSERTION, PROTEIN BINDING
B
GLY
13
B
GLY
13
1
B
GLY
14
B
GLY
14
-1.04
B
GLY
15
B
GLY
15
1
B
GLY
16
B
GLY
16
-14.89
UBIQ_HUMAN
UNP
1
1
P62988
MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
1
76
2GBJ
1
84
P62988
A
1
1
84
1
76
2GBJ
1
84
P62988
B
1
1
84
1
insertion
GLY
10
2GBJ
A
P62988
UNP
10
1
insertion
GLY
11
2GBJ
A
P62988
UNP
11
1
insertion
GLY
12
2GBJ
A
P62988
UNP
12
1
insertion
GLY
13
2GBJ
A
P62988
UNP
13
1
insertion
GLY
14
2GBJ
A
P62988
UNP
14
1
insertion
GLY
15
2GBJ
A
P62988
UNP
15
1
insertion
GLY
16
2GBJ
A
P62988
UNP
16
1
insertion
GLY
17
2GBJ
A
P62988
UNP
17
2
insertion
GLY
10
2GBJ
B
P62988
UNP
10
2
insertion
GLY
11
2GBJ
B
P62988
UNP
11
2
insertion
GLY
12
2GBJ
B
P62988
UNP
12
2
insertion
GLY
13
2GBJ
B
P62988
UNP
13
2
insertion
GLY
14
2GBJ
B
P62988
UNP
14
2
insertion
GLY
15
2GBJ
B
P62988
UNP
15
2
insertion
GLY
16
2GBJ
B
P62988
UNP
16
2
insertion
GLY
17
2GBJ
B
P62988
UNP
17
5
5
anti-parallel
parallel
anti-parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
THR
20
A
THR
20
A
GLU
24
A
GLU
24
A
GLN
2
A
GLN
2
A
THR
7
A
THR
7
A
THR
74
A
THR
74
A
LEU
79
A
LEU
79
A
GLN
49
A
GLN
49
A
PHE
53
A
PHE
53
A
LYS
56
A
LYS
56
A
GLN
57
A
GLN
57
B
THR
20
B
THR
20
B
GLU
24
B
GLU
24
B
GLN
2
B
GLN
2
B
THR
7
B
THR
7
B
THR
74
B
THR
74
B
LEU
79
B
LEU
79
B
GLN
49
B
GLN
49
B
PHE
53
B
PHE
53
B
LYS
56
B
LYS
56
B
GLN
57
B
GLN
57
19
P 21 21 21