0.006720 0.000000 0.000535 0.000000 0.033832 0.000000 0.000000 0.000000 0.010541 0.00000 0.00000 0.00000 Serganov, A. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 94.55 90.00 148.819 29.558 95.170 C10 H14 N5 O7 P 347.221 y ADENOSINE-5'-MONOPHOSPHATE RNA linking C9 H14 N3 O8 P 323.197 y CYTIDINE-5'-MONOPHOSPHATE RNA linking C9 H13 N3 O10 P2 385.161 n CYTIDINE-5'-PHOSPHATE-2',3'-CYCLIC PHOSPHATE RNA linking C10 H14 N5 O8 P 363.221 y GUANOSINE-5'-MONOPHOSPHATE RNA linking C10 H16 N5 O14 P3 523.180 n GUANOSINE-5'-TRIPHOSPHATE non-polymer H2 O 18.015 WATER non-polymer K 1 39.098 POTASSIUM ION non-polymer Mg 2 24.305 MAGNESIUM ION non-polymer Na 1 22.990 SODIUM ION non-polymer C12 H19 N4 O7 P2 S 1 425.314 THIAMINE DIPHOSPHATE non-polymer C9 H13 N2 O9 P 324.181 y URIDINE-5'-MONOPHOSPHATE RNA linking N 1 N O N 2 N P N 3 N O N 4 N O N 5 N O N 6 N C N 7 R C N 8 N O N 9 S C N 10 N O N 11 R C N 12 N O N 13 R C Y 14 N N Y 15 N C Y 16 N N Y 17 N C Y 18 N C N 19 N N Y 20 N N Y 21 N C Y 22 N N Y 23 N C N 24 N H N 25 N H N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N O N 39 N P N 40 N O N 41 N O N 42 N O N 43 N C N 44 R C N 45 N O N 46 S C N 47 N O N 48 R C N 49 N O N 50 R C N 51 N N N 52 N C N 53 N O N 54 N N N 55 N C N 56 N N N 57 N C N 58 N C N 59 N H N 60 N H N 61 N H N 62 N H N 63 N H N 64 N H N 65 N H N 66 N H N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 S P N 74 N O N 75 N O N 76 N P N 77 N O N 78 N O N 79 N O N 80 N O N 81 N C N 82 R C N 83 N O N 84 R C N 85 N O N 86 R C N 87 N O N 88 R C N 89 N N N 90 N C N 91 N O N 92 N N N 93 N C N 94 N N N 95 N C N 96 N C N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N O N 111 N P N 112 N O N 113 N O N 114 N O N 115 N C N 116 R C N 117 N O N 118 S C N 119 N O N 120 R C N 121 N O N 122 R C Y 123 N N Y 124 N C Y 125 N N Y 126 N C N 127 N C N 128 N O N 129 N N N 130 N C N 131 N N N 132 N N Y 133 N C N 134 N H N 135 N H N 136 N H N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N P N 149 N O N 150 N O N 151 N O N 152 N O N 153 N P N 154 N O N 155 N O N 156 N O N 157 N P N 158 N O N 159 N O N 160 N O N 161 N C N 162 R C N 163 N O N 164 S C N 165 N O N 166 R C N 167 N O N 168 R C Y 169 N N Y 170 N C Y 171 N N Y 172 N C N 173 N C N 174 N O N 175 N N N 176 N C N 177 N N N 178 N N Y 179 N C N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N H N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N O N 197 N H N 198 N H N 199 N K N 200 N MG N 201 N NA Y 202 N N Y 203 N C N 204 N C Y 205 N N Y 206 N C N 207 N N Y 208 N C Y 209 N C N 210 N C Y 211 N N Y 212 N C Y 213 N S Y 214 N C Y 215 N C N 216 N C N 217 N C N 218 N C N 219 N O N 220 S P N 221 N O N 222 N O N 223 N O N 224 N P N 225 N O N 226 N O N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N O N 248 N P N 249 N O N 250 N O N 251 N O N 252 N C N 253 R C N 254 N O N 255 S C N 256 N O N 257 R C N 258 N O N 259 R C N 260 N N N 261 N C N 262 N O N 263 N N N 264 N C N 265 N O N 266 N C N 267 N C N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 1 N sing N 2 N sing N 3 N doub N 4 N sing N 5 N sing N 6 N sing N 7 N sing N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing Y 25 N sing Y 26 N sing Y 27 N doub N 28 N sing Y 29 N sing Y 30 N sing Y 31 N doub N 32 N sing Y 33 N doub N 34 N sing N 35 N sing Y 36 N sing Y 37 N doub N 38 N sing Y 39 N sing N 40 N sing N 41 N sing N 42 N doub N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N doub N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N doub N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N doub N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N sing N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N doub N 106 N sing N 107 N doub N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing Y 139 N sing Y 140 N sing Y 141 N doub N 142 N sing Y 143 N sing N 144 N sing Y 145 N doub N 146 N doub N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N doub N 152 N sing N 153 N sing N 154 N sing N 155 N doub N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N doub N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N doub N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing Y 189 N sing Y 190 N sing Y 191 N doub N 192 N sing Y 193 N sing N 194 N sing Y 195 N doub N 196 N doub N 197 N sing N 198 N sing N 199 N sing N 200 N sing N 201 N doub N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing Y 207 N doub Y 208 N sing N 209 N sing Y 210 N sing N 211 N sing N 212 N sing N 213 N sing Y 214 N doub N 215 N sing Y 216 N sing N 217 N sing N 218 N sing Y 219 N doub N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N sing Y 225 N doub Y 226 N sing Y 227 N sing N 228 N sing Y 229 N sing Y 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N doub N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N doub N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N doub N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N sing N 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N doub N 284 N sing N 285 N doub N 286 N sing N 287 N sing UK Nature NATUAS 0006 0028-0836 441 1167 1171 10.1038/nature04740 16728979 Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch. 2006 10.2210/pdb2gdi/pdb pdb_00002gdi 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100.0 1 1 1 CCD 2005-11-07 ADSC QUANTUM 315 CCD 2005-11-07 ADSC QUANTUM 315 SI 111 CHANNEL SINGLE WAVELENGTH M x-ray 1 MAD M x-ray 2 1.1 1.0 1.1407 1.0 1.1411 1.0 1.1201 1.0 X25 NSLS 1.1 SYNCHROTRON NSLS BEAMLINE X25 X25 NSLS 1.1407, 1.1411, 1.1201 SYNCHROTRON NSLS BEAMLINE X25 26042.248 TPP riboswitch sensing domain 2 syn polymer 22.990 SODIUM ION 2 syn non-polymer 39.098 POTASSIUM ION 3 syn non-polymer 24.305 MAGNESIUM ION 6 syn non-polymer 425.314 THIAMINE DIPHOSPHATE 2 syn non-polymer 18.015 water 312 nat water no yes (GTP)GACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAA GUU(CCC) GGACUCGGGGUGCCCUUCUGCGUGAAGGCUGAGAAAUACCCGUAUCACCUGAUCUGGAUAAUGCCAGCGUAGGGAAGUUC X,Y polyribonucleotide n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n 1 2.00 38.59 6.90 28 % PEG4000, 100 mM Na-acetate, pH 4.8, and 200 mM NH4-acetate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 293K, pH 6.90 293 -11.228 1 19 X 10 X 89 1.265 X_GTP10:CCC89_X 1 -6.470 -0.314 -0.135 -0.059 -1.043 28 X 11 X 88 0.302 X_G11:U88_X 2 -14.028 -2.434 0.020 -0.536 2.171 1 20 X 12 X 87 1.757 X_A12:U87_X 3 -14.652 -0.125 0.314 0.032 -2.976 1 19 X 13 X 86 -3.583 X_C13:G86_X 4 -11.214 0.406 0.380 -0.199 -8.963 1 20 X 14 X 85 0.984 X_U14:A85_X 5 -2.047 0.161 0.049 -0.180 10.482 1 19 X 15 X 51 -0.232 X_C15:G51_X 6 -7.571 -0.107 -0.267 -0.071 -4.972 1 19 X 16 X 50 7.418 X_G16:C50_X 7 -16.232 -0.429 0.062 -0.083 -16.056 1 19 X 17 X 49 2.620 X_G17:C49_X 8 -18.219 -0.303 -0.026 -0.221 -17.628 1 19 X 18 X 48 -0.731 X_G18:C48_X 9 -18.037 -0.046 0.030 -0.130 -0.571 8 X 19 X 47 -19.008 X_G19:A47_X 10 -12.548 0.087 -0.230 1.579 14.618 1 20 X 20 X 45 4.798 X_U20:A45_X 11 9.679 -0.052 -0.231 -0.246 25.934 2 12 X 32 X 28 175.171 X_U32:U28_X 12 -28.638 1.423 -0.325 -1.405 -5.347 1 19 X 33 X 27 -2.128 X_G33:C27_X 13 -5.385 -0.248 -0.153 -0.187 4.349 1 20 X 34 X 26 0.561 X_A34:U26_X 14 -6.747 0.113 -0.013 -0.174 -1.100 1 20 X 35 X 25 1.561 X_A35:U25_X 15 -5.810 0.092 -0.054 -0.206 -9.995 1 19 X 36 X 23 -3.925 X_G36:C23_X 16 -0.134 -0.401 -0.443 -0.219 -10.684 1 19 X 37 X 22 3.815 X_G37:C22_X 17 -18.611 -0.592 -0.245 -0.192 -15.030 1 19 X 38 X 21 -2.544 X_C38:G21_X 18 0.162 0.221 0.308 -0.093 7.014 4 24 X 39 X 43 -93.893 X_U39:A43_X 19 9.676 4.282 0.390 -2.215 -4.496 1 19 X 29 Y 30 -0.125 X_G29:C30_Y 20 9.001 -0.219 -0.585 -0.148 4.635 1 19 X 30 Y 29 1.977 X_C30:G29_Y 21 9.976 0.128 -0.625 -0.136 -20.351 8 2 X 53 X 84 175.405 X_A53:A84_X 22 13.268 6.022 0.538 -5.259 15.787 10 11 X 56 X 83 -12.298 X_A56:G83_X 23 -17.479 -6.889 0.441 -4.503 12.732 1 19 X 57 X 82 2.706 X_C57:G82_X 24 -20.023 0.433 -0.176 -0.128 -1.830 1 19 X 58 X 81 1.061 X_C58:G81_X 25 -16.703 0.226 0.249 -0.150 -12.422 1 20 X 59 X 80 -3.922 X_U59:A80_X 26 -15.328 0.033 0.402 -0.100 -7.572 6 X 60 X 78 -94.707 X_G60:G78_X 27 6.124 1.260 0.182 3.660 -0.110 X 61 X 77 106.522 X_A61:C77_X 28 -14.365 -2.082 -0.360 3.052 13.353 1 19 X 63 X 76 0.391 X_C63:G76_X 29 -14.888 0.343 0.160 -0.164 4.843 1 20 X 64 X 75 6.557 X_U64:A75_X 30 -15.614 -0.142 0.203 -0.087 0.301 1 19 X 65 X 74 -4.449 X_G65:C74_X 31 -7.574 -0.116 -0.047 -0.301 -2.264 1 19 X 66 X 73 0.367 X_G66:C73_X 32 -7.508 -0.299 0.007 -0.186 -8.193 1 19 Y 10 Y 89 -0.712 Y_GTP10:CCC89_Y 33 -7.215 -0.249 -0.262 -0.172 -1.143 1 28 Y 11 Y 88 1.002 Y_G11:U88_Y 34 -13.313 -2.007 0.279 -0.487 3.067 1 20 Y 12 Y 87 4.131 Y_A12:U87_Y 35 -16.457 -0.055 0.152 -0.065 -2.138 1 19 Y 13 Y 86 -1.164 Y_C13:G86_Y 36 -12.930 0.284 0.119 -0.149 -4.571 1 20 Y 14 Y 85 6.535 Y_U14:A85_Y 37 -6.343 -0.059 0.114 -0.161 5.130 1 19 Y 15 Y 51 0.825 Y_C15:G51_Y 38 -10.023 0.077 0.099 0.004 -5.656 1 19 Y 16 Y 50 6.500 Y_G16:C50_Y 39 -14.822 -0.345 0.124 -0.049 -14.942 1 19 Y 17 Y 49 2.881 Y_G17:C49_Y 40 -15.870 -0.362 0.087 -0.147 -12.447 1 19 Y 18 Y 48 -1.115 Y_G18:C48_Y 41 -21.888 -0.145 0.133 0.064 -0.610 8 Y 19 Y 47 -19.858 Y_G19:A47_Y 42 -17.120 0.172 -0.162 1.485 16.852 1 20 Y 20 Y 45 9.999 Y_U20:A45_Y 43 5.227 -0.161 -0.358 -0.149 25.018 2 12 Y 32 Y 28 168.482 Y_U32:U28_Y 44 -30.158 1.420 -0.213 -1.317 -14.947 1 19 Y 33 Y 27 -4.720 Y_G33:C27_Y 45 -3.045 -0.551 -0.184 -0.087 -0.214 1 20 Y 34 Y 26 10.539 Y_A34:U26_Y 46 0.423 0.125 -0.077 0.084 4.123 1 20 Y 35 Y 25 4.580 Y_A35:U25_Y 47 3.143 0.064 -0.320 -0.214 -11.620 1 19 Y 36 Y 23 -0.062 Y_G36:C23_Y 48 -4.069 -0.300 -0.668 -0.158 -11.559 1 19 Y 37 Y 22 6.572 Y_G37:C22_Y 49 -16.551 -0.605 -0.271 -0.123 -15.356 1 19 Y 38 Y 21 -3.867 Y_C38:G21_Y 50 1.522 0.239 0.291 -0.191 5.627 4 24 Y 39 Y 43 -91.525 Y_U39:A43_Y 51 16.720 4.202 0.834 -2.441 -8.536 8 2 Y 53 Y 84 177.990 Y_A53:A84_Y 52 16.263 5.908 0.264 -5.113 9.159 10 11 Y 56 Y 83 -10.079 Y_A56:G83_Y 53 -12.873 -6.950 0.494 -4.680 13.639 1 19 Y 57 Y 82 0.875 Y_C57:G82_Y 54 -15.350 0.230 0.003 -0.183 11.252 1 19 Y 58 Y 81 2.488 Y_C58:G81_Y 55 -19.735 0.332 -0.114 -0.037 -12.705 1 20 Y 59 Y 80 -3.709 Y_U59:A80_Y 56 -14.981 -0.333 0.511 0.041 -14.522 6 Y 60 Y 78 -95.616 Y_G60:G78_Y 57 6.466 1.282 0.391 3.629 5.189 Y 61 Y 77 104.787 Y_A61:C77_Y 58 -10.329 -2.362 -0.495 2.685 10.392 1 19 Y 63 Y 76 3.720 Y_C63:G76_Y 59 -17.152 0.270 0.439 -0.023 0.749 1 20 Y 64 Y 75 2.861 Y_U64:A75_Y 60 -14.064 -0.232 0.296 -0.124 -2.206 1 19 Y 65 Y 74 -0.176 Y_G65:C74_Y 61 -8.862 -0.245 0.074 -0.277 -2.954 1 19 Y 66 Y 73 1.148 Y_G66:C73_Y 62 -5.670 -0.072 0.073 -0.128 2.159 25.005 X X 10 11 17.677 X X 89 88 2.799 7.524 -0.201 -1.750 XX_GTP10G11:U88CCC89_XX 1 -2.606 6.123 23.723 -5.785 -0.140 3.050 42.099 X X 11 12 7.308 X X 88 87 3.189 5.230 -0.012 -0.887 XX_G11A12:U87U88_XX 2 -3.870 5.408 41.616 -1.753 -0.367 2.768 38.165 X X 12 13 18.976 X X 87 86 3.372 12.204 -0.341 -1.401 XX_A12C13:G86U87_XX 3 0.653 -1.015 36.224 -3.631 0.600 3.297 32.791 X X 13 14 9.282 X X 86 85 3.297 5.151 0.997 -0.693 XX_C13U14:A85G86_XX 4 9.248 -16.664 31.080 -2.147 -0.118 2.697 24.999 X X 14 15 9.289 X X 85 51 2.837 3.976 1.245 -1.894 XX_U14C15:G51A85_XX 5 5.110 -11.936 24.159 -5.394 -1.568 3.211 31.608 X X 15 16 11.199 X X 51 50 3.739 6.056 0.903 -1.965 XX_C15G16:C50G51_XX 6 -2.884 5.333 30.906 -4.814 -2.232 3.346 34.554 X X 16 17 6.669 X X 50 49 3.550 3.953 -0.713 -1.760 XX_G16G17:C49C50_XX 7 -0.723 1.220 34.326 -3.608 1.082 3.016 32.920 X X 17 18 11.020 X X 49 48 3.377 6.204 -0.238 -1.516 XX_G17G18:C48C49_XX 8 2.429 -4.315 32.257 -3.720 0.829 2.707 34.652 X X 18 19 3.785 X X 48 47 2.901 2.247 -1.097 -0.603 XX_G18G19:A47C48_XX 9 4.254 -7.164 34.326 -1.311 2.404 2.368 13.803 X X 19 20 50.988 X X 47 45 3.056 10.661 0.343 0.549 XX_G19U20:A45A47_XX 10 2.037 -9.741 8.541 -8.458 0.627 2.777 119.696 X X 32 33 -1.853 X X 28 27 2.764 -3.205 0.150 -0.839 XX_U32G33:C27U28_XX 11 -1.427 0.825 119.665 -0.459 -0.098 2.938 31.528 X X 33 34 4.612 X X 27 26 3.071 2.503 0.480 -1.455 XX_G33A34:U26C27_XX 12 -0.717 1.321 31.423 -3.106 -1.005 3.062 33.356 X X 34 35 7.952 X X 26 25 3.370 4.548 0.197 -1.973 XX_A34A35:U25U26_XX 13 -1.898 3.317 33.000 -4.184 -0.654 3.695 54.596 X X 35 36 4.094 X X 25 23 3.520 3.747 2.703 -0.892 XX_A35G36:C23U25_XX 14 5.546 -6.059 54.216 -1.223 -2.577 2.249 33.282 X X 36 37 25.557 X X 23 22 3.329 14.167 0.598 -1.678 XX_G36G37:C22C23_XX 15 -3.495 6.306 29.995 -5.057 -1.570 2.978 39.465 X X 37 38 14.338 X X 22 21 3.456 9.591 -0.418 -1.679 XX_G37C38:G21C22_XX 16 -1.206 1.803 38.309 -3.616 0.476 2.465 70.130 X X 38 39 2.796 X X 21 43 2.834 3.204 -2.603 -0.848 XX_C38U39:A43G21_XX 17 9.616 -8.391 69.486 -0.830 2.543 2.866 31.810 X X 29 30 8.052 Y Y 30 29 3.214 4.399 -0.066 -2.368 XX_G29C30:G29C30_YY 18 -0.864 1.581 31.501 -5.072 -0.026 0.872 -172.216 X X 53 56 45.175 X X 84 83 0.606 -88.080 -2.036 -2.118 XX_A53A56:G83A84_XX 19 146.480 75.127 -61.864 1.277 -0.661 3.349 67.190 X X 56 57 9.692 X X 83 82 3.496 10.690 1.266 -0.747 XX_A56C57:G82G83_XX 20 -0.425 0.386 66.431 -1.113 -1.161 3.001 33.254 X X 57 58 16.065 X X 82 81 3.567 9.073 -0.315 -1.696 XX_C57C58:G81G82_XX 21 -2.737 4.846 31.912 -4.520 0.082 3.024 37.767 X X 58 59 12.915 X X 81 80 3.337 8.295 -0.518 -1.184 XX_C58U59:A80G81_XX 22 -1.078 1.679 36.862 -2.883 0.663 2.993 90.317 X X 59 60 3.068 X X 80 78 2.851 4.343 2.382 -1.649 XX_U59G60:G78A80_XX 23 10.531 -7.438 89.750 -1.241 -1.491 0.980 -172.951 X X 60 61 84.329 X X 78 77 0.158 -166.388 2.548 1.824 XX_G60A61:C77G78_XX 24 23.533 11.927 -107.650 -0.730 1.302 -1.312 174.592 X X 61 63 -71.792 X X 77 76 -1.976 -141.188 -2.806 -1.655 XX_A61C63:G76C77_XX 25 100.949 -51.331 65.632 -1.557 0.884 2.762 34.542 X X 63 64 13.764 X X 76 75 3.301 8.100 0.467 -1.925 XX_C63U64:A75G76_XX 26 -0.966 1.642 33.594 -4.420 -0.928 2.458 34.310 X X 64 65 20.630 X X 75 74 3.157 11.930 -0.917 -1.506 XX_U64G65:C74A75_XX 27 0.129 -0.222 32.227 -4.212 1.573 2.592 32.142 X X 65 66 14.875 X X 74 73 3.191 8.150 0.790 -2.084 XX_G65G66:C73C74_XX 28 0.684 -1.248 31.111 -5.076 -1.317 2.236 26.888 Y Y 10 11 14.678 Y Y 89 88 2.866 6.702 -0.056 -1.985 YY_GTP10G11:U88CCC89_YY 29 -5.820 12.747 25.406 -5.652 -1.080 2.997 40.443 Y Y 11 12 7.813 Y Y 88 87 3.151 5.386 -0.127 -1.012 YY_G11A12:U87U88_YY 30 -0.261 0.379 40.096 -2.034 0.156 2.721 35.595 Y Y 12 13 20.611 Y Y 87 86 3.358 12.353 -0.397 -1.296 YY_A12C13:G86U87_YY 31 0.269 -0.449 33.447 -3.847 0.686 3.204 28.614 Y Y 13 14 13.015 Y Y 86 85 3.312 6.345 1.036 -0.737 YY_C13U14:A85G86_YY 32 5.293 -10.858 27.419 -2.955 -0.874 2.221 27.137 Y Y 14 15 15.563 Y Y 85 51 2.958 7.216 0.444 -2.483 YY_U14C15:G51A85_YY 33 1.046 -2.256 26.157 -6.759 -0.734 2.730 31.205 Y Y 15 16 14.014 Y Y 51 50 3.375 7.464 0.827 -2.122 YY_C15G16:C50G51_YY 34 -1.911 3.588 30.262 -5.291 -1.881 3.279 32.270 Y Y 16 17 5.630 Y Y 50 49 3.444 3.123 -0.743 -1.923 YY_G16G17:C49C50_YY 35 -1.545 2.785 32.086 -4.031 1.054 2.627 32.179 Y Y 17 18 16.087 Y Y 49 48 3.227 8.791 -0.134 -1.685 YY_G17G18:C48C49_YY 36 3.558 -6.512 30.785 -4.478 0.823 2.772 35.925 Y Y 18 19 3.826 Y Y 48 47 2.937 2.355 -1.159 -0.650 YY_G18G19:A47C48_YY 37 3.383 -5.496 35.696 -1.348 2.302 2.170 14.617 Y Y 19 20 55.046 Y Y 47 45 2.968 11.829 0.320 0.587 YY_G19U20:A45A47_YY 38 3.174 -14.769 7.993 -8.236 1.570 2.804 117.961 Y Y 32 33 -0.170 Y Y 28 27 2.809 -0.291 0.440 -1.031 YY_U32G33:C27U28_YY 39 -2.749 1.604 117.941 -0.599 -0.280 2.812 31.488 Y Y 33 34 5.271 Y Y 27 26 2.993 2.856 0.808 -1.769 YY_G33A34:U26C27_YY 40 -0.489 0.902 31.357 -3.733 -1.570 2.944 27.896 Y Y 34 35 7.305 Y Y 26 25 3.232 3.512 -0.137 -2.157 YY_A34A35:U25U26_YY 41 -0.755 1.571 27.668 -5.269 0.112 3.446 49.905 Y Y 35 36 13.302 Y Y 25 23 3.653 11.131 2.307 -1.344 YY_A35G36:C23U25_YY 42 3.814 -4.558 48.585 -2.485 -2.428 1.917 31.855 Y Y 36 37 28.702 Y Y 23 22 3.271 15.082 0.550 -1.842 YY_G36G37:C22C23_YY 43 -4.913 9.351 27.713 -5.698 -1.766 2.736 37.762 Y Y 37 38 16.787 Y Y 22 21 3.383 10.725 -0.482 -1.907 YY_G37C38:G21C22_YY 44 -0.536 0.839 36.257 -4.269 0.678 2.503 67.419 Y Y 38 39 6.375 Y Y 21 43 2.973 7.047 -2.598 -1.146 YY_C38U39:A43G21_YY 45 9.597 -8.681 66.482 -1.262 2.653 0.962 -170.852 Y Y 53 56 44.368 Y Y 84 83 0.825 -86.730 -1.991 -2.242 YY_A53A56:G83A84_YY 46 143.031 73.170 -87.974 1.321 -0.674 3.247 67.078 Y Y 56 57 4.787 Y Y 83 82 3.290 5.286 1.226 -0.697 YY_A56C57:G82G83_YY 47 0.862 -0.781 66.889 -0.837 -1.076 2.919 29.240 Y Y 57 58 11.020 Y Y 82 81 3.299 5.531 -0.340 -1.734 YY_C57C58:G81G82_YY 48 0.187 -0.372 28.723 -4.585 0.713 3.046 39.219 Y Y 58 59 17.089 Y Y 81 80 3.599 11.289 -0.263 -1.498 YY_C58U59:A80G81_YY 49 -5.089 7.704 37.286 -3.639 -0.243 3.044 92.604 Y Y 59 60 1.869 Y Y 80 78 2.884 2.699 2.169 -1.658 YY_U59G60:G78A80_YY 50 11.692 -8.100 92.000 -1.193 -1.299 0.813 -172.368 Y Y 60 61 84.078 Y Y 78 77 -0.020 -165.564 2.542 1.766 YY_G60A61:C77G78_YY 51 26.142 13.276 -103.799 -0.750 1.295 -0.826 173.358 Y Y 61 63 -71.494 Y Y 77 76 -1.536 -139.645 -2.682 -1.746 YY_A61C63:G76C77_YY 52 101.435 -51.931 52.395 -1.470 0.911 2.891 32.963 Y Y 63 64 12.454 Y Y 76 75 3.311 7.013 -0.270 -1.726 YY_C63U64:A75G76_YY 53 -1.672 2.969 32.187 -4.188 0.203 2.432 34.721 Y Y 64 65 18.680 Y Y 75 74 3.034 10.968 -0.412 -1.491 YY_U64G65:C74A75_YY 54 -0.192 0.327 32.994 -3.939 0.665 2.983 32.544 Y Y 65 66 6.027 Y Y 74 73 3.177 3.372 0.414 -1.854 YY_G65G66:C73C74_YY 55 0.782 -1.397 32.364 -3.865 -0.610 chem_comp_atom chem_comp_bond database_2 pdbx_struct_conn_angle struct_conn struct_conn_type struct_site repository Initial release Version format compliance Advisory Version format compliance Data collection Database references Derived calculations 1 0 2006-07-04 1 1 2008-05-01 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.conn_type_id _struct_conn.id _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn_type.id _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-03-16 REL REL NA SODIUM ION K POTASSIUM ION MG MAGNESIUM ION TPP THIAMINE DIPHOSPHATE HOH water RNA was prepared by in vitro transcription sample NA 121 2 NA NA 121 X NA 122 2 NA NA 122 X K 123 3 K K 123 X K 124 3 K K 124 X K 125 3 K K 125 X MO6 101 4 MG MG 101 X MO6 102 4 MG MG 102 X MO6 103 4 MG MG 103 X TPP 100 5 TPP TPP 100 X MO6 111 4 MG MG 111 Y MO6 112 4 MG MG 112 Y MO6 113 4 MG MG 113 Y TPP 100 5 TPP TPP 100 Y HOH 200 6 HOH HOH 200 X HOH 201 6 HOH HOH 201 X HOH 202 6 HOH HOH 202 X HOH 203 6 HOH HOH 203 X HOH 204 6 HOH HOH 204 X HOH 205 6 HOH HOH 205 X HOH 206 6 HOH HOH 206 X HOH 207 6 HOH HOH 207 X HOH 208 6 HOH HOH 208 X HOH 209 6 HOH HOH 209 X HOH 210 6 HOH HOH 210 X HOH 211 6 HOH HOH 211 X HOH 212 6 HOH HOH 212 X HOH 213 6 HOH HOH 213 X HOH 214 6 HOH HOH 214 X HOH 215 6 HOH HOH 215 X HOH 216 6 HOH HOH 216 X HOH 217 6 HOH HOH 217 X HOH 218 6 HOH HOH 218 X HOH 219 6 HOH HOH 219 X HOH 220 6 HOH HOH 220 X HOH 221 6 HOH HOH 221 X HOH 222 6 HOH HOH 222 X HOH 223 6 HOH HOH 223 X HOH 224 6 HOH HOH 224 X HOH 225 6 HOH HOH 225 X HOH 226 6 HOH HOH 226 X HOH 227 6 HOH HOH 227 X HOH 228 6 HOH HOH 228 X HOH 229 6 HOH HOH 229 X HOH 230 6 HOH HOH 230 X HOH 231 6 HOH HOH 231 X HOH 232 6 HOH HOH 232 X HOH 233 6 HOH HOH 233 X HOH 234 6 HOH HOH 234 X HOH 235 6 HOH HOH 235 X HOH 236 6 HOH HOH 236 X HOH 237 6 HOH HOH 237 X HOH 238 6 HOH HOH 238 X HOH 239 6 HOH HOH 239 X HOH 348 6 HOH HOH 348 X HOH 349 6 HOH HOH 349 X HOH 350 6 HOH HOH 350 X HOH 351 6 HOH HOH 351 X HOH 352 6 HOH HOH 352 X HOH 353 6 HOH HOH 353 X HOH 354 6 HOH HOH 354 X HOH 356 6 HOH HOH 356 X HOH 357 6 HOH HOH 357 X HOH 358 6 HOH HOH 358 X HOH 359 6 HOH HOH 359 X HOH 360 6 HOH HOH 360 X HOH 361 6 HOH HOH 361 X HOH 362 6 HOH HOH 362 X HOH 363 6 HOH HOH 363 X HOH 364 6 HOH HOH 364 X HOH 365 6 HOH HOH 365 X HOH 366 6 HOH HOH 366 X HOH 367 6 HOH HOH 367 X HOH 368 6 HOH HOH 368 X HOH 369 6 HOH HOH 369 X HOH 370 6 HOH HOH 370 X HOH 371 6 HOH HOH 371 X HOH 372 6 HOH HOH 372 X HOH 373 6 HOH HOH 373 X HOH 374 6 HOH HOH 374 X HOH 375 6 HOH HOH 375 X HOH 376 6 HOH HOH 376 X HOH 377 6 HOH HOH 377 X HOH 378 6 HOH HOH 378 X HOH 379 6 HOH HOH 379 X HOH 380 6 HOH HOH 380 X HOH 381 6 HOH HOH 381 X HOH 382 6 HOH HOH 382 X HOH 383 6 HOH HOH 383 X HOH 384 6 HOH HOH 384 X HOH 385 6 HOH HOH 385 X HOH 386 6 HOH HOH 386 X HOH 387 6 HOH HOH 387 X HOH 388 6 HOH HOH 388 X HOH 389 6 HOH HOH 389 X HOH 390 6 HOH HOH 390 X HOH 391 6 HOH HOH 391 X HOH 392 6 HOH HOH 392 X HOH 393 6 HOH HOH 393 X HOH 394 6 HOH HOH 394 X HOH 395 6 HOH HOH 395 X HOH 396 6 HOH HOH 396 X HOH 397 6 HOH HOH 397 X HOH 398 6 HOH HOH 398 X HOH 399 6 HOH HOH 399 X HOH 400 6 HOH HOH 400 X HOH 401 6 HOH HOH 401 X HOH 402 6 HOH HOH 402 X HOH 403 6 HOH HOH 403 X HOH 404 6 HOH HOH 404 X HOH 405 6 HOH HOH 405 X HOH 406 6 HOH HOH 406 X HOH 407 6 HOH HOH 407 X HOH 408 6 HOH HOH 408 X HOH 409 6 HOH HOH 409 X HOH 410 6 HOH HOH 410 X HOH 411 6 HOH HOH 411 X HOH 412 6 HOH HOH 412 X HOH 413 6 HOH HOH 413 X HOH 414 6 HOH HOH 414 X HOH 415 6 HOH HOH 415 X HOH 416 6 HOH HOH 416 X HOH 417 6 HOH HOH 417 X HOH 418 6 HOH HOH 418 X HOH 419 6 HOH HOH 419 X HOH 420 6 HOH HOH 420 X HOH 421 6 HOH HOH 421 X HOH 422 6 HOH HOH 422 X HOH 423 6 HOH HOH 423 X HOH 424 6 HOH HOH 424 X HOH 425 6 HOH HOH 425 X HOH 426 6 HOH HOH 426 X HOH 427 6 HOH HOH 427 X HOH 428 6 HOH HOH 428 X HOH 429 6 HOH HOH 429 X HOH 430 6 HOH HOH 430 X HOH 431 6 HOH HOH 431 X HOH 432 6 HOH HOH 432 X HOH 433 6 HOH HOH 433 X HOH 434 6 HOH HOH 434 X HOH 435 6 HOH HOH 435 X HOH 436 6 HOH HOH 436 X HOH 437 6 HOH HOH 437 X HOH 438 6 HOH HOH 438 X HOH 439 6 HOH HOH 439 X HOH 440 6 HOH HOH 440 X HOH 441 6 HOH HOH 441 X HOH 442 6 HOH HOH 442 X HOH 443 6 HOH HOH 443 X HOH 444 6 HOH HOH 444 X HOH 445 6 HOH HOH 445 X HOH 446 6 HOH HOH 446 X HOH 447 6 HOH HOH 447 X HOH 448 6 HOH HOH 448 X HOH 449 6 HOH HOH 449 X HOH 450 6 HOH HOH 450 X HOH 451 6 HOH HOH 451 X HOH 452 6 HOH HOH 452 X HOH 453 6 HOH HOH 453 X HOH 454 6 HOH HOH 454 X HOH 455 6 HOH HOH 455 X HOH 456 6 HOH HOH 456 X HOH 457 6 HOH HOH 457 X HOH 458 6 HOH HOH 458 X HOH 459 6 HOH HOH 459 X HOH 460 6 HOH HOH 460 X HOH 461 6 HOH HOH 461 X HOH 462 6 HOH HOH 462 X HOH 463 6 HOH HOH 463 X HOH 464 6 HOH HOH 464 X HOH 465 6 HOH HOH 465 X HOH 466 6 HOH HOH 466 X HOH 467 6 HOH HOH 467 X HOH 468 6 HOH HOH 468 X HOH 469 6 HOH HOH 469 X HOH 470 6 HOH HOH 470 X HOH 471 6 HOH HOH 471 X HOH 472 6 HOH HOH 472 X HOH 473 6 HOH HOH 473 X HOH 474 6 HOH HOH 474 X HOH 475 6 HOH HOH 475 X HOH 476 6 HOH HOH 476 X HOH 477 6 HOH HOH 477 X HOH 478 6 HOH HOH 478 X HOH 479 6 HOH HOH 479 X HOH 480 6 HOH HOH 480 X HOH 481 6 HOH HOH 481 X HOH 482 6 HOH HOH 482 X HOH 483 6 HOH HOH 483 X HOH 484 6 HOH HOH 484 X HOH 485 6 HOH HOH 485 X HOH 486 6 HOH HOH 486 X HOH 487 6 HOH HOH 487 X MO6 101 6 HOH HOH 488 X MO6 101 6 HOH HOH 489 X MO6 101 6 HOH HOH 490 X MO6 102 6 HOH HOH 491 X MO6 102 6 HOH HOH 492 X MO6 102 6 HOH HOH 493 X MO6 102 6 HOH HOH 494 X MO6 103 6 HOH HOH 495 X MO6 103 6 HOH HOH 496 X MO6 103 6 HOH HOH 497 X MO6 103 6 HOH HOH 498 X MO6 103 6 HOH HOH 499 X HOH 240 6 HOH HOH 240 Y HOH 241 6 HOH HOH 241 Y HOH 242 6 HOH HOH 242 Y HOH 243 6 HOH HOH 243 Y HOH 244 6 HOH HOH 244 Y HOH 245 6 HOH HOH 245 Y HOH 246 6 HOH HOH 246 Y HOH 247 6 HOH HOH 247 Y HOH 248 6 HOH HOH 248 Y HOH 249 6 HOH HOH 249 Y HOH 250 6 HOH HOH 250 Y HOH 251 6 HOH HOH 251 Y HOH 252 6 HOH HOH 252 Y HOH 253 6 HOH HOH 253 Y HOH 254 6 HOH HOH 254 Y HOH 255 6 HOH HOH 255 Y HOH 256 6 HOH HOH 256 Y HOH 257 6 HOH HOH 257 Y HOH 258 6 HOH HOH 258 Y HOH 259 6 HOH HOH 259 Y HOH 260 6 HOH HOH 260 Y HOH 261 6 HOH HOH 261 Y HOH 262 6 HOH HOH 262 Y HOH 263 6 HOH HOH 263 Y HOH 264 6 HOH HOH 264 Y HOH 265 6 HOH HOH 265 Y HOH 266 6 HOH HOH 266 Y HOH 267 6 HOH HOH 267 Y HOH 268 6 HOH HOH 268 Y HOH 269 6 HOH HOH 269 Y HOH 270 6 HOH HOH 270 Y HOH 271 6 HOH HOH 271 Y HOH 272 6 HOH HOH 272 Y HOH 273 6 HOH HOH 273 Y HOH 274 6 HOH HOH 274 Y HOH 275 6 HOH HOH 275 Y HOH 276 6 HOH HOH 276 Y HOH 277 6 HOH HOH 277 Y HOH 278 6 HOH HOH 278 Y HOH 279 6 HOH HOH 279 Y HOH 280 6 HOH HOH 280 Y HOH 281 6 HOH HOH 281 Y HOH 282 6 HOH HOH 282 Y HOH 283 6 HOH HOH 283 Y HOH 284 6 HOH HOH 284 Y HOH 285 6 HOH HOH 285 Y HOH 286 6 HOH HOH 286 Y HOH 287 6 HOH HOH 287 Y HOH 288 6 HOH HOH 288 Y HOH 289 6 HOH HOH 289 Y HOH 290 6 HOH HOH 290 Y HOH 291 6 HOH HOH 291 Y HOH 292 6 HOH HOH 292 Y HOH 293 6 HOH HOH 293 Y HOH 294 6 HOH HOH 294 Y HOH 295 6 HOH HOH 295 Y HOH 296 6 HOH HOH 296 Y HOH 297 6 HOH HOH 297 Y HOH 298 6 HOH HOH 298 Y HOH 299 6 HOH HOH 299 Y HOH 300 6 HOH HOH 300 Y HOH 301 6 HOH HOH 301 Y HOH 302 6 HOH HOH 302 Y HOH 303 6 HOH HOH 303 Y HOH 304 6 HOH HOH 304 Y HOH 305 6 HOH HOH 305 Y HOH 306 6 HOH HOH 306 Y HOH 307 6 HOH HOH 307 Y HOH 308 6 HOH HOH 308 Y HOH 309 6 HOH HOH 309 Y HOH 310 6 HOH HOH 310 Y HOH 311 6 HOH HOH 311 Y HOH 312 6 HOH HOH 312 Y HOH 313 6 HOH HOH 313 Y HOH 314 6 HOH HOH 314 Y HOH 315 6 HOH HOH 315 Y HOH 316 6 HOH HOH 316 Y HOH 317 6 HOH HOH 317 Y HOH 318 6 HOH HOH 318 Y HOH 319 6 HOH HOH 319 Y HOH 320 6 HOH HOH 320 Y HOH 321 6 HOH HOH 321 Y HOH 322 6 HOH HOH 322 Y HOH 323 6 HOH HOH 323 Y HOH 324 6 HOH HOH 324 Y HOH 325 6 HOH HOH 325 Y HOH 326 6 HOH HOH 326 Y HOH 327 6 HOH HOH 327 Y HOH 328 6 HOH HOH 328 Y HOH 329 6 HOH HOH 329 Y HOH 330 6 HOH HOH 330 Y HOH 331 6 HOH HOH 331 Y HOH 332 6 HOH HOH 332 Y HOH 333 6 HOH HOH 333 Y HOH 334 6 HOH HOH 334 Y HOH 335 6 HOH HOH 335 Y HOH 336 6 HOH HOH 336 Y HOH 337 6 HOH HOH 337 Y HOH 338 6 HOH HOH 338 Y HOH 339 6 HOH HOH 339 Y HOH 340 6 HOH HOH 340 Y HOH 341 6 HOH HOH 341 Y HOH 342 6 HOH HOH 342 Y HOH 343 6 HOH HOH 343 Y HOH 344 6 HOH HOH 344 Y HOH 345 6 HOH HOH 345 Y HOH 346 6 HOH HOH 346 Y HOH 347 6 HOH HOH 347 Y HOH 355 6 HOH HOH 355 Y MO6 111 6 HOH HOH 500 Y MO6 111 6 HOH HOH 501 Y MO6 111 6 HOH HOH 502 Y MO6 112 6 HOH HOH 503 Y MO6 112 6 HOH HOH 504 Y MO6 112 6 HOH HOH 505 Y MO6 112 6 HOH HOH 506 Y MO6 113 6 HOH HOH 507 Y MO6 113 6 HOH HOH 508 Y MO6 113 6 HOH HOH 509 Y MO6 113 6 HOH HOH 510 Y MO6 113 6 HOH HOH 511 Y PO4 9 n 1 GTP 10 X G 11 n 2 G 11 X A 12 n 3 A 12 X C 13 n 4 C 13 X U 14 n 5 U 14 X C 15 n 6 C 15 X G 16 n 7 G 16 X G 17 n 8 G 17 X G 18 n 9 G 18 X G 19 n 10 G 19 X U 20 n 11 U 20 X G 21 n 12 G 21 X C 22 n 13 C 22 X C 23 n 14 C 23 X C 24 n 15 C 24 X U 25 n 16 U 25 X U 26 n 17 U 26 X C 27 n 18 C 27 X U 28 n 19 U 28 X G 29 n 20 G 29 X C 30 n 21 C 30 X G 31 n 22 G 31 X U 32 n 23 U 32 X G 33 n 24 G 33 X A 34 n 25 A 34 X A 35 n 26 A 35 X G 36 n 27 G 36 X G 37 n 28 G 37 X C 38 n 29 C 38 X U 39 n 30 U 39 X G 40 n 31 G 40 X A 41 n 32 A 41 X G 42 n 33 G 42 X A 43 n 34 A 43 X A 44 n 35 A 44 X A 45 n 36 A 45 X U 46 n 37 U 46 X A 47 n 38 A 47 X C 48 n 39 C 48 X C 49 n 40 C 49 X C 50 n 41 C 50 X G 51 n 42 G 51 X U 52 n 43 U 52 X A 53 n 44 A 53 X U 54 n 45 U 54 X C 55 n 46 C 55 X A 56 n 47 A 56 X C 57 n 48 C 57 X C 58 n 49 C 58 X U 59 n 50 U 59 X G 60 n 51 G 60 X A 61 n 52 A 61 X U 62 n 53 U 62 X C 63 n 54 C 63 X U 64 n 55 U 64 X G 65 n 56 G 65 X G 66 n 57 G 66 X A 67 n 58 A 67 X U 68 n 59 U 68 X A 69 n 60 A 69 X A 70 n 61 A 70 X U 71 n 62 U 71 X G 72 n 63 G 72 X C 73 n 64 C 73 X C 74 n 65 C 74 X A 75 n 66 A 75 X G 76 n 67 G 76 X C 77 n 68 C 77 X G 78 n 69 G 78 X U 79 n 70 U 79 X A 80 n 71 A 80 X G 81 n 72 G 81 X G 82 n 73 G 82 X G 83 n 74 G 83 X A 84 n 75 A 84 X A 85 n 76 A 85 X G 86 n 77 G 86 X U 87 n 78 U 87 X U 88 n 79 U 88 X CCC 89 n 80 CCC 89 X POP 9 n 1 GTP 10 Y G 11 n 2 G 11 Y A 12 n 3 A 12 Y C 13 n 4 C 13 Y U 14 n 5 U 14 Y C 15 n 6 C 15 Y G 16 n 7 G 16 Y G 17 n 8 G 17 Y G 18 n 9 G 18 Y G 19 n 10 G 19 Y U 20 n 11 U 20 Y G 21 n 12 G 21 Y C 22 n 13 C 22 Y C 23 n 14 C 23 Y C 24 n 15 C 24 Y U 25 n 16 U 25 Y U 26 n 17 U 26 Y C 27 n 18 C 27 Y U 28 n 19 U 28 Y G 29 n 20 G 29 Y C 30 n 21 C 30 Y G 31 n 22 G 31 Y U 32 n 23 U 32 Y G 33 n 24 G 33 Y A 34 n 25 A 34 Y A 35 n 26 A 35 Y G 36 n 27 G 36 Y G 37 n 28 G 37 Y C 38 n 29 C 38 Y U 39 n 30 U 39 Y G 40 n 31 G 40 Y A 41 n 32 A 41 Y G 42 n 33 G 42 Y A 43 n 34 A 43 Y A 44 n 35 A 44 Y A 45 n 36 A 45 Y U 46 n 37 U 46 Y A 47 n 38 A 47 Y C 48 n 39 C 48 Y C 49 n 40 C 49 Y C 50 n 41 C 50 Y G 51 n 42 G 51 Y U 52 n 43 U 52 Y A 53 n 44 A 53 Y U 54 n 45 U 54 Y C 55 n 46 C 55 Y A 56 n 47 A 56 Y C 57 n 48 C 57 Y C 58 n 49 C 58 Y U 59 n 50 U 59 Y G 60 n 51 G 60 Y A 61 n 52 A 61 Y U 62 n 53 U 62 Y C 63 n 54 C 63 Y U 64 n 55 U 64 Y G 65 n 56 G 65 Y G 66 n 57 G 66 Y A 67 n 58 A 67 Y U 68 n 59 U 68 Y A 69 n 60 A 69 Y A 70 n 61 A 70 Y U 71 n 62 U 71 Y G 72 n 63 G 72 Y C 73 n 64 C 73 Y C 74 n 65 C 74 Y A 75 n 66 A 75 Y G 76 n 67 G 76 Y C 77 n 68 C 77 Y G 78 n 69 G 78 Y U 79 n 70 U 79 Y A 80 n 71 A 80 Y G 81 n 72 G 81 Y G 82 n 73 G 82 Y G 83 n 74 G 83 Y A 84 n 75 A 84 Y A 85 n 76 A 85 Y G 86 n 77 G 86 Y U 87 n 78 U 87 Y U 88 n 79 U 88 Y CCC 89 n 80 CCC 89 Y 7.5548 -8.3424 3.1239 13.8257 -0.1275 3.6837 0.4421 0.2056 -0.0882 -0.1476 -0.5312 -0.3718 0.4062 -0.0891 0.0891 0.0322 -0.0223 0.0404 -0.0752 0.1377 0.0391 refined -22.4480 1.0570 -25.3380 X-RAY DIFFRACTION 6.8186 1.7147 1.0639 7.5176 -1.9691 6.6580 -0.0598 -0.0283 0.3076 -0.2099 -0.2076 0.1167 -0.1825 -0.2278 0.2674 -0.0222 0.1008 0.0664 -0.1142 -0.0002 -0.0193 refined 40.0360 -0.1840 64.6920 X-RAY DIFFRACTION 6.2186 -0.8192 2.8260 3.5808 -1.6046 3.3589 -0.3249 0.5839 0.5866 -0.3533 -0.1552 -0.3612 -0.5217 0.4263 0.4801 -0.1152 -0.0154 0.0802 -0.1640 0.0446 -0.0329 refined -15.8970 -1.1140 -7.9280 X-RAY DIFFRACTION 5.0196 -2.0482 2.3271 4.6454 -0.8595 4.9786 0.2944 0.8711 -0.6504 -0.1426 0.1430 -0.0811 0.4815 0.7966 -0.4373 -0.0787 0.0293 0.0361 0.0993 -0.1288 0.0380 refined 24.8440 2.1720 55.2130 X-RAY DIFFRACTION 0.9816 0.4867 0.2468 2.0990 0.1856 1.2610 0.1009 -0.2134 -0.0952 0.2772 -0.0791 -0.1273 -0.1813 0.2004 -0.0217 -0.1446 -0.0226 0.0807 -0.1226 0.0177 -0.0758 refined -4.2750 -9.6720 11.1870 X-RAY DIFFRACTION 3.1155 0.8479 4.3320 1.8549 -0.1430 7.0998 -0.0564 0.2330 -0.4193 -0.3695 0.4038 -0.1589 0.2329 0.2628 -0.3474 0.0292 -0.0656 0.0498 0.0736 -0.1008 0.0041 refined 11.0190 10.6070 38.8650 X-RAY DIFFRACTION 2.8451 0.2833 0.1843 2.7122 -0.4823 1.0377 0.0861 -0.0418 -0.1683 -0.0220 -0.0483 0.0849 0.0096 -0.0292 -0.0378 -0.1982 0.0059 0.0941 -0.2037 0.0076 -0.0451 refined -25.2230 -15.6610 1.7600 X-RAY DIFFRACTION 2.5407 -0.8284 0.4015 1.6758 -0.1264 2.7663 -0.1894 -0.0125 -0.1806 0.1865 0.0806 0.0444 -0.3455 -0.0702 0.1088 0.0281 0.0844 0.0548 0.0856 -0.0472 -0.0060 refined 10.9680 14.1810 62.4920 X-RAY DIFFRACTION X 10 A 1 X 14 A 5 X-RAY DIFFRACTION 1 X 85 A 76 X 89 A 80 X-RAY DIFFRACTION 1 Y 10 B 1 Y 14 B 5 X-RAY DIFFRACTION 2 Y 85 B 76 Y 89 B 80 X-RAY DIFFRACTION 2 X 15 A 6 X 20 A 11 X-RAY DIFFRACTION 3 X 45 A 36 X 51 A 42 X-RAY DIFFRACTION 3 Y 15 B 6 Y 20 B 11 X-RAY DIFFRACTION 4 Y 45 B 36 Y 51 B 42 X-RAY DIFFRACTION 4 X 21 A 12 X 44 A 35 X-RAY DIFFRACTION 5 X 103 J 1 X 103 J 1 X-RAY DIFFRACTION 5 Y 21 B 12 Y 44 B 35 X-RAY DIFFRACTION 6 Y 113 M 1 Y 113 M 1 X-RAY DIFFRACTION 6 X 52 A 43 X 84 A 75 X-RAY DIFFRACTION 7 X 101 H 1 X 102 I 1 X-RAY DIFFRACTION 7 X 121 C 1 X 125 G 1 X-RAY DIFFRACTION 7 X 100 N 1 X 100 N 1 X-RAY DIFFRACTION 7 Y 52 B 43 Y 84 B 75 X-RAY DIFFRACTION 8 Y 111 K 1 Y 112 L 1 X-RAY DIFFRACTION 8 Y 100 O 1 Y 100 O 1 X-RAY DIFFRACTION 8 author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 X G 21 A O2' G 12 1_555 56.8 X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 X G 72 A N7 G 63 1_555 130.3 X G 21 A O2' G 12 1_555 X K 123 E K K 1_555 X G 72 A N7 G 63 1_555 74.6 X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 X G 72 A O6 G 63 1_555 97.0 X G 21 A O2' G 12 1_555 X K 123 E K K 1_555 X G 72 A O6 G 63 1_555 84.6 X G 72 A N7 G 63 1_555 X K 123 E K K 1_555 X G 72 A O6 G 63 1_555 66.7 X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 X HOH 360 P O HOH 1_555 105.1 X G 21 A O2' G 12 1_555 X K 123 E K K 1_555 X HOH 360 P O HOH 1_555 81.6 X G 72 A N7 G 63 1_555 X K 123 E K K 1_555 X HOH 360 P O HOH 1_555 74.7 X G 72 A O6 G 63 1_555 X K 123 E K K 1_555 X HOH 360 P O HOH 1_555 141.2 X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 70.8 X G 21 A O2' G 12 1_555 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 127.6 X G 72 A N7 G 63 1_555 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 156.4 X G 72 A O6 G 63 1_555 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 104.1 X HOH 360 P O HOH 1_555 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 113.0 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X G 21 A N2 G 12 1_555 39.6 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X G 21 A O2' G 12 1_555 89.9 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X G 21 A O2' G 12 1_555 126.8 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X C 22 A O4' C 13 1_555 75.0 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X C 22 A O4' C 13 1_555 79.9 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 X C 22 A O4' C 13 1_555 69.0 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X U 71 A O2' U 62 1_555 147.6 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X U 71 A O2' U 62 1_555 133.1 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 X U 71 A O2' U 62 1_555 77.1 X C 22 A O4' C 13 1_555 X K 124 F K K 1_555 X U 71 A O2' U 62 1_555 72.7 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X U 71 A O2 U 62 1_555 85.4 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X U 71 A O2 U 62 1_555 48.5 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 X U 71 A O2 U 62 1_555 141.3 X C 22 A O4' C 13 1_555 X K 124 F K K 1_555 X U 71 A O2 U 62 1_555 72.7 X U 71 A O2' U 62 1_555 X K 124 F K K 1_555 X U 71 A O2 U 62 1_555 86.7 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 122.8 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 89.0 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 143.9 X C 22 A O4' C 13 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 129.7 X U 71 A O2' U 62 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 80.7 X U 71 A O2 U 62 1_555 X K 124 F K K 1_555 X C 73 A OP1 C 64 1_555 63.8 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 93.1 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 117.4 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 68.4 X C 22 A O4' C 13 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 135.6 X U 71 A O2' U 62 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 108.8 X U 71 A O2 U 62 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 150.2 X C 73 A OP1 C 64 1_555 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 92.9 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 X U 39 A O4' U 30 1_555 72.1 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 X A 70 A N6 A 61 1_555 56.4 X U 39 A O4' U 30 1_555 X K 125 G K K 1_555 X A 70 A N6 A 61 1_555 127.2 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 X U 71 A O4 U 62 1_555 115.9 X U 39 A O4' U 30 1_555 X K 125 G K K 1_555 X U 71 A O4 U 62 1_555 152.8 X A 70 A N6 A 61 1_555 X K 125 G K K 1_555 X U 71 A O4 U 62 1_555 61.5 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 X C 73 A O4' C 64 1_555 156.9 X U 39 A O4' U 30 1_555 X K 125 G K K 1_555 X C 73 A O4' C 64 1_555 98.3 X A 70 A N6 A 61 1_555 X K 125 G K K 1_555 X C 73 A O4' C 64 1_555 124.4 X U 71 A O4 U 62 1_555 X K 125 G K K 1_555 X C 73 A O4' C 64 1_555 63.8 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 86.7 X U 39 A O4' U 30 1_555 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 69.5 X A 70 A N6 A 61 1_555 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 95.2 X U 71 A O4 U 62 1_555 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 84.7 X C 73 A O4' C 64 1_555 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 70.2 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 X HOH 495 P O HOH 1_555 170.1 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 X HOH 496 P O HOH 1_555 81.8 X HOH 495 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 496 P O HOH 1_555 89.0 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 X HOH 497 P O HOH 1_555 98.7 X HOH 495 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 497 P O HOH 1_555 90.5 X HOH 496 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 497 P O HOH 1_555 179.4 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 X HOH 498 P O HOH 1_555 93.1 X HOH 495 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 498 P O HOH 1_555 90.5 X HOH 496 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 498 P O HOH 1_555 90.8 X HOH 497 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 498 P O HOH 1_555 88.9 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 86.6 X HOH 495 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 89.9 X HOH 496 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 90.0 X HOH 497 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 90.3 X HOH 498 P O HOH 1_555 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 179.1 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 X G 78 A O6 G 69 1_555 90.2 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 X TPP 100 K O2B TPP 1_555 172.9 X G 78 A O6 G 69 1_555 X MG 101 H MG MG 1_555 X TPP 100 K O2B TPP 1_555 82.7 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 X HOH 488 P O HOH 1_555 88.1 X G 78 A O6 G 69 1_555 X MG 101 H MG MG 1_555 X HOH 488 P O HOH 1_555 83.4 X TPP 100 K O2B TPP 1_555 X MG 101 H MG MG 1_555 X HOH 488 P O HOH 1_555 90.4 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 X HOH 489 P O HOH 1_555 91.4 X G 78 A O6 G 69 1_555 X MG 101 H MG MG 1_555 X HOH 489 P O HOH 1_555 95.5 X TPP 100 K O2B TPP 1_555 X MG 101 H MG MG 1_555 X HOH 489 P O HOH 1_555 90.0 X HOH 488 P O HOH 1_555 X MG 101 H MG MG 1_555 X HOH 489 P O HOH 1_555 178.8 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 84.8 X G 78 A O6 G 69 1_555 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 172.3 X TPP 100 K O2B TPP 1_555 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 102.2 X HOH 488 P O HOH 1_555 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 90.7 X HOH 489 P O HOH 1_555 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 90.4 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 X A 61 A N3 A 52 1_555 73.4 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 X HOH 356 P O HOH 1_555 88.9 X A 61 A N3 A 52 1_555 X NA 121 C NA NA 1_555 X HOH 356 P O HOH 1_555 74.9 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 X HOH 357 P O HOH 1_555 88.0 X A 61 A N3 A 52 1_555 X NA 121 C NA NA 1_555 X HOH 357 P O HOH 1_555 104.3 X HOH 356 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 357 P O HOH 1_555 176.9 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 X HOH 358 P O HOH 1_555 90.6 X A 61 A N3 A 52 1_555 X NA 121 C NA NA 1_555 X HOH 358 P O HOH 1_555 153.8 X HOH 356 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 358 P O HOH 1_555 84.5 X HOH 357 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 358 P O HOH 1_555 95.4 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 170.5 X A 61 A N3 A 52 1_555 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 98.3 X HOH 356 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 84.5 X HOH 357 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 98.6 X HOH 358 P O HOH 1_555 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 95.6 X U 64 A O4 U 55 1_555 X NA 122 D NA NA 1_555 X G 65 A O6 G 56 1_555 82.6 X U 64 A O4 U 55 1_555 X NA 122 D NA NA 1_555 X HOH 380 P O HOH 1_555 83.1 X G 65 A O6 G 56 1_555 X NA 122 D NA NA 1_555 X HOH 380 P O HOH 1_555 94.8 X U 64 A O4 U 55 1_555 X NA 122 D NA NA 1_555 X HOH 396 P O HOH 1_555 169.0 X G 65 A O6 G 56 1_555 X NA 122 D NA NA 1_555 X HOH 396 P O HOH 1_555 95.8 X HOH 380 P O HOH 1_555 X NA 122 D NA NA 1_555 X HOH 396 P O HOH 1_555 107.9 X U 64 A O4 U 55 1_555 X NA 122 D NA NA 1_555 X HOH 403 P O HOH 1_555 88.2 X G 65 A O6 G 56 1_555 X NA 122 D NA NA 1_555 X HOH 403 P O HOH 1_555 95.7 X HOH 380 P O HOH 1_555 X NA 122 D NA NA 1_555 X HOH 403 P O HOH 1_555 165.3 X HOH 396 P O HOH 1_555 X NA 122 D NA NA 1_555 X HOH 403 P O HOH 1_555 81.1 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 X TPP 100 K O2A TPP 1_555 83.4 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 X HOH 491 P O HOH 1_555 173.7 X TPP 100 K O2A TPP 1_555 X MG 102 I MG MG 1_555 X HOH 491 P O HOH 1_555 96.0 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 X HOH 492 P O HOH 1_555 88.4 X TPP 100 K O2A TPP 1_555 X MG 102 I MG MG 1_555 X HOH 492 P O HOH 1_555 171.7 X HOH 491 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 492 P O HOH 1_555 92.2 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 X HOH 493 P O HOH 1_555 83.3 X TPP 100 K O2A TPP 1_555 X MG 102 I MG MG 1_555 X HOH 493 P O HOH 1_555 88.7 X HOH 491 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 493 P O HOH 1_555 90.4 X HOH 492 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 493 P O HOH 1_555 90.5 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 95.9 X TPP 100 K O2A TPP 1_555 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 90.1 X HOH 491 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 90.3 X HOH 492 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 90.6 X HOH 493 P O HOH 1_555 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 178.7 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 Y HOH 507 Q O HOH 1_555 173.3 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 Y HOH 508 Q O HOH 1_555 83.4 Y HOH 507 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 508 Q O HOH 1_555 90.0 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 Y HOH 509 Q O HOH 1_555 96.5 Y HOH 507 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 509 Q O HOH 1_555 90.1 Y HOH 508 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 509 Q O HOH 1_555 179.6 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 Y HOH 510 Q O HOH 1_555 91.6 Y HOH 507 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 510 Q O HOH 1_555 89.8 Y HOH 508 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 510 Q O HOH 1_555 89.4 Y HOH 509 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 510 Q O HOH 1_555 90.1 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 88.0 Y HOH 507 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 90.5 Y HOH 508 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 90.7 Y HOH 509 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 89.7 Y HOH 510 Q O HOH 1_555 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 179.6 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 Y G 78 B O6 G 69 1_555 88.5 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 Y TPP 100 O O2B TPP 1_555 165.5 Y G 78 B O6 G 69 1_555 Y MG 111 L MG MG 1_555 Y TPP 100 O O2B TPP 1_555 89.8 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 Y HOH 500 Q O HOH 1_555 95.3 Y G 78 B O6 G 69 1_555 Y MG 111 L MG MG 1_555 Y HOH 500 Q O HOH 1_555 91.7 Y TPP 100 O O2B TPP 1_555 Y MG 111 L MG MG 1_555 Y HOH 500 Q O HOH 1_555 99.0 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 Y HOH 501 Q O HOH 1_555 83.7 Y G 78 B O6 G 69 1_555 Y MG 111 L MG MG 1_555 Y HOH 501 Q O HOH 1_555 87.5 Y TPP 100 O O2B TPP 1_555 Y MG 111 L MG MG 1_555 Y HOH 501 Q O HOH 1_555 81.9 Y HOH 500 Q O HOH 1_555 Y MG 111 L MG MG 1_555 Y HOH 501 Q O HOH 1_555 178.8 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 79.7 Y G 78 B O6 G 69 1_555 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 168.2 Y TPP 100 O O2B TPP 1_555 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 101.3 Y HOH 500 Q O HOH 1_555 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 90.7 Y HOH 501 Q O HOH 1_555 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 89.9 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 Y TPP 100 O O1B TPP 1_555 89.4 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 503 Q O HOH 1_555 82.1 Y TPP 100 O O1B TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 503 Q O HOH 1_555 164.3 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 504 Q O HOH 1_555 170.1 Y TPP 100 O O1B TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 504 Q O HOH 1_555 99.7 Y HOH 503 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 504 Q O HOH 1_555 89.8 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 505 Q O HOH 1_555 84.1 Y TPP 100 O O1B TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 505 Q O HOH 1_555 102.1 Y HOH 503 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 505 Q O HOH 1_555 90.2 Y HOH 504 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 505 Q O HOH 1_555 90.3 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 95.7 Y TPP 100 O O1B TPP 1_555 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 77.5 Y HOH 503 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 90.1 Y HOH 504 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 90.0 Y HOH 505 Q O HOH 1_555 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 179.6 X GTP 10 GUANOSINE-5'-TRIPHOSPHATE A GTP 1 G X CCC 89 A CCC 80 C Y GTP 10 GUANOSINE-5'-TRIPHOSPHATE B GTP 1 G Y CCC 89 B CCC 80 C 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 X PG GTP 10 A PG GTP 1 1 Y 1 X O1G GTP 10 A O1G GTP 1 1 Y 1 X O2G GTP 10 A O2G GTP 1 1 Y 1 X O3G GTP 10 A O3G GTP 1 1 Y 34.95 -0.76000 0.00000 -2.37000 1.81000 0.00000 -1.43000 0.955 0.935 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.241 0.208 0.21 2.05 20.00 1337 25309 25258 5.000 99.8 9.414 0.135 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.000 MAD 0.269 0.196 0.80 0.80 1.20 MAXIMUM LIKELIHOOD MASK 2.05 20.00 312 3817 63 3442 0 0.003 0.021 3946 1.043 3.000 6115 0.129 0.200 798 0.004 0.020 1696 0.164 0.300 1548 0.284 0.500 2406 0.191 0.500 449 0.141 0.500 7 0.160 0.300 51 0.177 0.500 17 0.199 1.500 2 0.435 2.000 6 0.850 3.000 4151 1.196 4.500 6109 0.312 0.285 2.10 98 1850 20 100.00 2.050 20.000 2GDI 27007 0.000 0.062 1,2 4.300 99.8 0.475 2.05 2.12 2.890 1,2 4.30 100.0 refinement REFMAC 5.2.0005 data reduction CAD4 data scaling HKL-2000 phasing SOLVE Crystal structure of thiamine pyrophosphate-specific riboswitch in complex with thiamine pyrophosphate 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N 3 N N 4 N N 4 N N 4 N N 5 N N 4 N N 4 N N 4 N N 5 N N 6 N N 6 N N covale 1.605 both X GTP 10 A O3' GTP 1 1_555 X G 11 A P G 2 1_555 covale 1.598 both X U 88 A O3' U 79 1_555 X CCC 89 A P CCC 80 1_555 covale 1.596 both Y GTP 10 B O3' GTP 1 1_555 Y G 11 B P G 2 1_555 covale 1.600 both Y U 88 B O3' U 79 1_555 Y CCC 89 B P CCC 80 1_555 metalc 2.904 X G 21 A O3' G 12 1_555 X K 123 E K K 1_555 metalc 2.795 X G 21 A O2' G 12 1_555 X K 123 E K K 1_555 metalc 2.902 X G 21 A N3 G 12 1_555 X K 124 F K K 1_555 metalc 3.634 X G 21 A N2 G 12 1_555 X K 124 F K K 1_555 metalc 3.110 X G 21 A O2' G 12 1_555 X K 124 F K K 1_555 metalc 3.591 X C 22 A O4' C 13 1_555 X K 124 F K K 1_555 metalc 2.673 X C 38 A O2' C 29 1_555 X K 125 G K K 1_555 metalc 3.021 X U 39 A O4' U 30 1_555 X K 125 G K K 1_555 metalc 2.595 X A 41 A N7 A 32 1_555 X MG 103 J MG MG 1_555 metalc 2.162 X G 60 A O6 G 51 1_555 X MG 101 H MG MG 1_555 metalc 2.952 X A 61 A O2' A 52 1_555 X NA 121 C NA NA 1_555 metalc 2.909 X A 61 A N3 A 52 1_555 X NA 121 C NA NA 1_555 metalc 2.782 X U 64 A O4 U 55 1_555 X NA 122 D NA NA 1_555 metalc 2.697 X G 65 A O6 G 56 1_555 X NA 122 D NA NA 1_555 metalc 3.647 X A 70 A N6 A 61 1_555 X K 125 G K K 1_555 metalc 2.722 X U 71 A O2' U 62 1_555 X K 124 F K K 1_555 metalc 3.160 X U 71 A O2 U 62 1_555 X K 124 F K K 1_555 metalc 2.901 X U 71 A O4 U 62 1_555 X K 125 G K K 1_555 metalc 2.687 X G 72 A N7 G 63 1_555 X K 123 E K K 1_555 metalc 2.947 X G 72 A O6 G 63 1_555 X K 123 E K K 1_555 metalc 2.508 X C 73 A OP1 C 64 1_555 X K 124 F K K 1_555 metalc 3.191 X C 73 A O4' C 64 1_555 X K 125 G K K 1_555 metalc 2.176 X G 78 A O6 G 69 1_555 X MG 101 H MG MG 1_555 metalc 2.161 X TPP 100 K O2B TPP 1_555 X MG 101 H MG MG 1_555 metalc 2.162 X TPP 100 K O1B TPP 1_555 X MG 102 I MG MG 1_555 metalc 2.165 X TPP 100 K O2A TPP 1_555 X MG 102 I MG MG 1_555 metalc 2.177 X MG 101 H MG MG 1_555 X HOH 488 P O HOH 1_555 metalc 2.178 X MG 101 H MG MG 1_555 X HOH 489 P O HOH 1_555 metalc 2.179 X MG 101 H MG MG 1_555 X HOH 490 P O HOH 1_555 metalc 2.175 X MG 102 I MG MG 1_555 X HOH 491 P O HOH 1_555 metalc 2.178 X MG 102 I MG MG 1_555 X HOH 492 P O HOH 1_555 metalc 2.181 X MG 102 I MG MG 1_555 X HOH 493 P O HOH 1_555 metalc 2.178 X MG 102 I MG MG 1_555 X HOH 494 P O HOH 1_555 metalc 2.181 X MG 103 J MG MG 1_555 X HOH 495 P O HOH 1_555 metalc 2.183 X MG 103 J MG MG 1_555 X HOH 496 P O HOH 1_555 metalc 2.181 X MG 103 J MG MG 1_555 X HOH 497 P O HOH 1_555 metalc 2.185 X MG 103 J MG MG 1_555 X HOH 498 P O HOH 1_555 metalc 2.181 X MG 103 J MG MG 1_555 X HOH 499 P O HOH 1_555 metalc 2.963 X NA 121 C NA NA 1_555 X HOH 356 P O HOH 1_555 metalc 2.312 X NA 121 C NA NA 1_555 X HOH 357 P O HOH 1_555 metalc 2.518 X NA 121 C NA NA 1_555 X HOH 358 P O HOH 1_555 metalc 2.393 X NA 121 C NA NA 1_555 X HOH 359 P O HOH 1_555 metalc 2.515 X NA 122 D NA NA 1_555 X HOH 380 P O HOH 1_555 metalc 2.269 X NA 122 D NA NA 1_555 X HOH 396 P O HOH 1_555 metalc 2.555 X NA 122 D NA NA 1_555 X HOH 403 P O HOH 1_555 metalc 2.774 X K 123 E K K 1_555 X HOH 360 P O HOH 1_555 metalc 2.630 X K 123 E K K 1_555 X HOH 361 P O HOH 1_555 metalc 3.093 X K 124 F K K 1_555 X HOH 365 P O HOH 1_555 metalc 2.718 X K 125 G K K 1_555 X HOH 376 P O HOH 1_555 metalc 2.484 Y A 41 B N7 A 32 1_555 Y MG 113 N MG MG 1_555 metalc 2.177 Y G 60 B O6 G 51 1_555 Y MG 111 L MG MG 1_555 metalc 2.179 Y G 78 B O6 G 69 1_555 Y MG 111 L MG MG 1_555 metalc 2.183 Y TPP 100 O O2B TPP 1_555 Y MG 111 L MG MG 1_555 metalc 2.265 Y TPP 100 O O1A TPP 1_555 Y MG 112 M MG MG 1_555 metalc 2.178 Y TPP 100 O O1B TPP 1_555 Y MG 112 M MG MG 1_555 metalc 2.180 Y MG 111 L MG MG 1_555 Y HOH 500 Q O HOH 1_555 metalc 2.180 Y MG 111 L MG MG 1_555 Y HOH 501 Q O HOH 1_555 metalc 2.179 Y MG 111 L MG MG 1_555 Y HOH 502 Q O HOH 1_555 metalc 2.179 Y MG 112 M MG MG 1_555 Y HOH 503 Q O HOH 1_555 metalc 2.178 Y MG 112 M MG MG 1_555 Y HOH 504 Q O HOH 1_555 metalc 2.181 Y MG 112 M MG MG 1_555 Y HOH 505 Q O HOH 1_555 metalc 2.182 Y MG 112 M MG MG 1_555 Y HOH 506 Q O HOH 1_555 metalc 2.182 Y MG 113 N MG MG 1_555 Y HOH 507 Q O HOH 1_555 metalc 2.182 Y MG 113 N MG MG 1_555 Y HOH 508 Q O HOH 1_555 metalc 2.181 Y MG 113 N MG MG 1_555 Y HOH 509 Q O HOH 1_555 metalc 2.182 Y MG 113 N MG MG 1_555 Y HOH 510 Q O HOH 1_555 metalc 2.180 Y MG 113 N MG MG 1_555 Y HOH 511 Q O HOH 1_555 hydrog WATSON-CRICK X GTP 10 A N1 GTP 1 1_555 X CCC 89 A N3 CCC 80 1_555 hydrog WATSON-CRICK X GTP 10 A N2 GTP 1 1_555 X CCC 89 A O2 CCC 80 1_555 hydrog WATSON-CRICK X GTP 10 A O6 GTP 1 1_555 X CCC 89 A N4 CCC 80 1_555 hydrog TYPE_28_PAIR X G 11 A N1 G 2 1_555 X U 88 A O2 U 79 1_555 hydrog TYPE_28_PAIR X G 11 A O6 G 2 1_555 X U 88 A N3 U 79 1_555 hydrog WATSON-CRICK X A 12 A N1 A 3 1_555 X U 87 A N3 U 78 1_555 hydrog WATSON-CRICK X A 12 A N6 A 3 1_555 X U 87 A O4 U 78 1_555 hydrog WATSON-CRICK X C 13 A N3 C 4 1_555 X G 86 A N1 G 77 1_555 hydrog WATSON-CRICK X C 13 A N4 C 4 1_555 X G 86 A O6 G 77 1_555 hydrog WATSON-CRICK X C 13 A O2 C 4 1_555 X G 86 A N2 G 77 1_555 hydrog WATSON-CRICK X U 14 A N3 U 5 1_555 X A 85 A N1 A 76 1_555 hydrog WATSON-CRICK X U 14 A O4 U 5 1_555 X A 85 A N6 A 76 1_555 hydrog WATSON-CRICK X C 15 A N3 C 6 1_555 X G 51 A N1 G 42 1_555 hydrog WATSON-CRICK X C 15 A N4 C 6 1_555 X G 51 A O6 G 42 1_555 hydrog WATSON-CRICK X C 15 A O2 C 6 1_555 X G 51 A N2 G 42 1_555 hydrog WATSON-CRICK X G 16 A N1 G 7 1_555 X C 50 A N3 C 41 1_555 hydrog WATSON-CRICK X G 16 A N2 G 7 1_555 X C 50 A O2 C 41 1_555 hydrog WATSON-CRICK X G 16 A O6 G 7 1_555 X C 50 A N4 C 41 1_555 hydrog G-A MISPAIR X G 16 A N2 G 7 1_555 X A 84 A N3 A 75 1_555 hydrog WATSON-CRICK X G 17 A N1 G 8 1_555 X C 49 A N3 C 40 1_555 hydrog WATSON-CRICK X G 17 A N2 G 8 1_555 X C 49 A O2 C 40 1_555 hydrog WATSON-CRICK X G 17 A O6 G 8 1_555 X C 49 A N4 C 40 1_555 hydrog G-A MISPAIR X G 17 A N2 G 8 1_555 X A 56 A N3 A 47 1_555 hydrog WATSON-CRICK X G 18 A N1 G 9 1_555 X C 48 A N3 C 39 1_555 hydrog WATSON-CRICK X G 18 A N2 G 9 1_555 X C 48 A O2 C 39 1_555 hydrog WATSON-CRICK X G 18 A O6 G 9 1_555 X C 48 A N4 C 39 1_555 hydrog TYPE_4_PAIR X G 19 A N2 G 10 1_555 X G 42 A N3 G 33 1_555 hydrog TYPE_4_PAIR X G 19 A N3 G 10 1_555 X G 42 A N2 G 33 1_555 hydrog TYPE_8_PAIR X G 19 A N1 G 10 1_555 X A 47 A N1 A 38 1_555 hydrog TYPE_8_PAIR X G 19 A O6 G 10 1_555 X A 47 A N6 A 38 1_555 hydrog WATSON-CRICK X U 20 A N3 U 11 1_555 X A 45 A N1 A 36 1_555 hydrog WATSON-CRICK X U 20 A O4 U 11 1_555 X A 45 A N6 A 36 1_555 hydrog WATSON-CRICK X G 21 A N1 G 12 1_555 X C 38 A N3 C 29 1_555 hydrog WATSON-CRICK X G 21 A N2 G 12 1_555 X C 38 A O2 C 29 1_555 hydrog WATSON-CRICK X G 21 A O6 G 12 1_555 X C 38 A N4 C 29 1_555 hydrog G-U MISPAIR X G 21 A N2 G 12 1_555 X U 71 A O2 U 62 1_555 hydrog WATSON-CRICK X C 22 A N3 C 13 1_555 X G 37 A N1 G 28 1_555 hydrog WATSON-CRICK X C 22 A N4 C 13 1_555 X G 37 A O6 G 28 1_555 hydrog WATSON-CRICK X C 22 A O2 C 13 1_555 X G 37 A N2 G 28 1_555 hydrog WATSON-CRICK X C 23 A N3 C 14 1_555 X G 36 A N1 G 27 1_555 hydrog WATSON-CRICK X C 23 A N4 C 14 1_555 X G 36 A O6 G 27 1_555 hydrog WATSON-CRICK X C 23 A O2 C 14 1_555 X G 36 A N2 G 27 1_555 hydrog C-G PAIR X C 24 A N4 C 15 1_555 X G 37 A N3 G 28 1_555 hydrog WATSON-CRICK X U 25 A N3 U 16 1_555 X A 35 A N1 A 26 1_555 hydrog WATSON-CRICK X U 25 A O4 U 16 1_555 X A 35 A N6 A 26 1_555 hydrog WATSON-CRICK X U 26 A N3 U 17 1_555 X A 34 A N1 A 25 1_555 hydrog WATSON-CRICK X U 26 A O4 U 17 1_555 X A 34 A N6 A 25 1_555 hydrog WATSON-CRICK X C 27 A N3 C 18 1_555 X G 33 A N1 G 24 1_555 hydrog WATSON-CRICK X C 27 A N4 C 18 1_555 X G 33 A O6 G 24 1_555 hydrog WATSON-CRICK X C 27 A O2 C 18 1_555 X G 33 A N2 G 24 1_555 hydrog TYPE_12_PAIR X U 28 A N3 U 19 1_555 X U 32 A O4 U 23 1_555 hydrog TYPE_12_PAIR X U 28 A O4 U 19 1_555 X U 32 A N3 U 23 1_555 hydrog WATSON-CRICK X G 29 A N1 G 20 1_555 Y C 30 B N3 C 21 1_555 hydrog WATSON-CRICK X G 29 A N2 G 20 1_555 Y C 30 B O2 C 21 1_555 hydrog WATSON-CRICK X G 29 A O6 G 20 1_555 Y C 30 B N4 C 21 1_555 hydrog WATSON-CRICK X C 30 A N3 C 21 1_555 Y G 29 B N1 G 20 1_555 hydrog WATSON-CRICK X C 30 A N4 C 21 1_555 Y G 29 B O6 G 20 1_555 hydrog WATSON-CRICK X C 30 A O2 C 21 1_555 Y G 29 B N2 G 20 1_555 hydrog G-A MISPAIR X G 37 A N2 G 28 1_555 X A 69 A N1 A 60 1_555 hydrog REVERSED HOOGSTEEN X U 39 A N3 U 30 1_555 X A 43 A N7 A 34 1_555 hydrog REVERSED HOOGSTEEN X U 39 A O2 U 30 1_555 X A 43 A N6 A 34 1_555 hydrog TYPE_2_PAIR X A 53 A N6 A 44 1_555 X A 84 A N7 A 75 1_555 hydrog TYPE_2_PAIR X A 53 A N7 A 44 1_555 X A 84 A N6 A 75 1_555 hydrog TYPE_11_PAIR X A 56 A N6 A 47 1_555 X G 83 A N3 G 74 1_555 hydrog TYPE_11_PAIR X A 56 A N7 A 47 1_555 X G 83 A N2 G 74 1_555 hydrog WATSON-CRICK X C 57 A N3 C 48 1_555 X G 82 A N1 G 73 1_555 hydrog WATSON-CRICK X C 57 A N4 C 48 1_555 X G 82 A O6 G 73 1_555 hydrog WATSON-CRICK X C 57 A O2 C 48 1_555 X G 82 A N2 G 73 1_555 hydrog WATSON-CRICK X C 58 A N3 C 49 1_555 X G 81 A N1 G 72 1_555 hydrog WATSON-CRICK X C 58 A N4 C 49 1_555 X G 81 A O6 G 72 1_555 hydrog WATSON-CRICK X C 58 A O2 C 49 1_555 X G 81 A N2 G 72 1_555 hydrog WATSON-CRICK X U 59 A N3 U 50 1_555 X A 80 A N1 A 71 1_555 hydrog WATSON-CRICK X U 59 A O4 U 50 1_555 X A 80 A N6 A 71 1_555 hydrog TYPE_6_PAIR X G 60 A N1 G 51 1_555 X G 78 A O6 G 69 1_555 hydrog TYPE_6_PAIR X G 60 A N2 G 51 1_555 X G 78 A N7 G 69 1_555 hydrog A-C MISPAIR X A 61 A N6 A 52 1_555 X C 77 A O2 C 68 1_555 hydrog WATSON-CRICK X C 63 A N3 C 54 1_555 X G 76 A N1 G 67 1_555 hydrog WATSON-CRICK X C 63 A N4 C 54 1_555 X G 76 A O6 G 67 1_555 hydrog WATSON-CRICK X C 63 A O2 C 54 1_555 X G 76 A N2 G 67 1_555 hydrog WATSON-CRICK X U 64 A N3 U 55 1_555 X A 75 A N1 A 66 1_555 hydrog WATSON-CRICK X U 64 A O4 U 55 1_555 X A 75 A N6 A 66 1_555 hydrog WATSON-CRICK X G 65 A N1 G 56 1_555 X C 74 A N3 C 65 1_555 hydrog WATSON-CRICK X G 65 A N2 G 56 1_555 X C 74 A O2 C 65 1_555 hydrog WATSON-CRICK X G 65 A O6 G 56 1_555 X C 74 A N4 C 65 1_555 hydrog WATSON-CRICK X G 66 A N1 G 57 1_555 X C 73 A N3 C 64 1_555 hydrog WATSON-CRICK X G 66 A N2 G 57 1_555 X C 73 A O2 C 64 1_555 hydrog WATSON-CRICK X G 66 A O6 G 57 1_555 X C 73 A N4 C 64 1_555 hydrog WATSON-CRICK Y GTP 10 B N1 GTP 1 1_555 Y CCC 89 B N3 CCC 80 1_555 hydrog WATSON-CRICK Y GTP 10 B N2 GTP 1 1_555 Y CCC 89 B O2 CCC 80 1_555 hydrog WATSON-CRICK Y GTP 10 B O6 GTP 1 1_555 Y CCC 89 B N4 CCC 80 1_555 hydrog TYPE_28_PAIR Y G 11 B N1 G 2 1_555 Y U 88 B O2 U 79 1_555 hydrog TYPE_28_PAIR Y G 11 B O6 G 2 1_555 Y U 88 B N3 U 79 1_555 hydrog WATSON-CRICK Y A 12 B N1 A 3 1_555 Y U 87 B N3 U 78 1_555 hydrog WATSON-CRICK Y A 12 B N6 A 3 1_555 Y U 87 B O4 U 78 1_555 hydrog WATSON-CRICK Y C 13 B N3 C 4 1_555 Y G 86 B N1 G 77 1_555 hydrog WATSON-CRICK Y C 13 B N4 C 4 1_555 Y G 86 B O6 G 77 1_555 hydrog WATSON-CRICK Y C 13 B O2 C 4 1_555 Y G 86 B N2 G 77 1_555 hydrog WATSON-CRICK Y U 14 B N3 U 5 1_555 Y A 85 B N1 A 76 1_555 hydrog WATSON-CRICK Y U 14 B O4 U 5 1_555 Y A 85 B N6 A 76 1_555 hydrog WATSON-CRICK Y C 15 B N3 C 6 1_555 Y G 51 B N1 G 42 1_555 hydrog WATSON-CRICK Y C 15 B N4 C 6 1_555 Y G 51 B O6 G 42 1_555 hydrog WATSON-CRICK Y C 15 B O2 C 6 1_555 Y G 51 B N2 G 42 1_555 hydrog WATSON-CRICK Y G 16 B N1 G 7 1_555 Y C 50 B N3 C 41 1_555 hydrog WATSON-CRICK Y G 16 B N2 G 7 1_555 Y C 50 B O2 C 41 1_555 hydrog WATSON-CRICK Y G 16 B O6 G 7 1_555 Y C 50 B N4 C 41 1_555 hydrog G-A MISPAIR Y G 16 B N2 G 7 1_555 Y A 84 B N3 A 75 1_555 hydrog WATSON-CRICK Y G 17 B N1 G 8 1_555 Y C 49 B N3 C 40 1_555 hydrog WATSON-CRICK Y G 17 B N2 G 8 1_555 Y C 49 B O2 C 40 1_555 hydrog WATSON-CRICK Y G 17 B O6 G 8 1_555 Y C 49 B N4 C 40 1_555 hydrog G-A MISPAIR Y G 17 B N2 G 8 1_555 Y A 56 B N3 A 47 1_555 hydrog WATSON-CRICK Y G 18 B N1 G 9 1_555 Y C 48 B N3 C 39 1_555 hydrog WATSON-CRICK Y G 18 B N2 G 9 1_555 Y C 48 B O2 C 39 1_555 hydrog WATSON-CRICK Y G 18 B O6 G 9 1_555 Y C 48 B N4 C 39 1_555 hydrog TYPE_4_PAIR Y G 19 B N2 G 10 1_555 Y G 42 B N3 G 33 1_555 hydrog TYPE_4_PAIR Y G 19 B N3 G 10 1_555 Y G 42 B N2 G 33 1_555 hydrog TYPE_8_PAIR Y G 19 B N1 G 10 1_555 Y A 47 B N1 A 38 1_555 hydrog TYPE_8_PAIR Y G 19 B O6 G 10 1_555 Y A 47 B N6 A 38 1_555 hydrog WATSON-CRICK Y U 20 B N3 U 11 1_555 Y A 45 B N1 A 36 1_555 hydrog WATSON-CRICK Y U 20 B O4 U 11 1_555 Y A 45 B N6 A 36 1_555 hydrog WATSON-CRICK Y G 21 B N1 G 12 1_555 Y C 38 B N3 C 29 1_555 hydrog WATSON-CRICK Y G 21 B N2 G 12 1_555 Y C 38 B O2 C 29 1_555 hydrog WATSON-CRICK Y G 21 B O6 G 12 1_555 Y C 38 B N4 C 29 1_555 hydrog G-U MISPAIR Y G 21 B N2 G 12 1_555 Y U 71 B O2 U 62 1_555 hydrog WATSON-CRICK Y C 22 B N3 C 13 1_555 Y G 37 B N1 G 28 1_555 hydrog WATSON-CRICK Y C 22 B N4 C 13 1_555 Y G 37 B O6 G 28 1_555 hydrog WATSON-CRICK Y C 22 B O2 C 13 1_555 Y G 37 B N2 G 28 1_555 hydrog WATSON-CRICK Y C 23 B N3 C 14 1_555 Y G 36 B N1 G 27 1_555 hydrog WATSON-CRICK Y C 23 B N4 C 14 1_555 Y G 36 B O6 G 27 1_555 hydrog WATSON-CRICK Y C 23 B O2 C 14 1_555 Y G 36 B N2 G 27 1_555 hydrog C-G PAIR Y C 24 B N4 C 15 1_555 Y G 37 B N3 G 28 1_555 hydrog WATSON-CRICK Y U 25 B N3 U 16 1_555 Y A 35 B N1 A 26 1_555 hydrog WATSON-CRICK Y U 25 B O4 U 16 1_555 Y A 35 B N6 A 26 1_555 hydrog WATSON-CRICK Y U 26 B N3 U 17 1_555 Y A 34 B N1 A 25 1_555 hydrog WATSON-CRICK Y U 26 B O4 U 17 1_555 Y A 34 B N6 A 25 1_555 hydrog WATSON-CRICK Y C 27 B N3 C 18 1_555 Y G 33 B N1 G 24 1_555 hydrog WATSON-CRICK Y C 27 B N4 C 18 1_555 Y G 33 B O6 G 24 1_555 hydrog WATSON-CRICK Y C 27 B O2 C 18 1_555 Y G 33 B N2 G 24 1_555 hydrog TYPE_12_PAIR Y U 28 B N3 U 19 1_555 Y U 32 B O4 U 23 1_555 hydrog TYPE_12_PAIR Y U 28 B O4 U 19 1_555 Y U 32 B N3 U 23 1_555 hydrog G-A MISPAIR Y G 37 B N2 G 28 1_555 Y A 69 B N1 A 60 1_555 hydrog REVERSED HOOGSTEEN Y U 39 B N3 U 30 1_555 Y A 43 B N7 A 34 1_555 hydrog REVERSED HOOGSTEEN Y U 39 B O2 U 30 1_555 Y A 43 B N6 A 34 1_555 hydrog TYPE_2_PAIR Y A 53 B N6 A 44 1_555 Y A 84 B N7 A 75 1_555 hydrog TYPE_2_PAIR Y A 53 B N7 A 44 1_555 Y A 84 B N6 A 75 1_555 hydrog TYPE_11_PAIR Y A 56 B N6 A 47 1_555 Y G 83 B N3 G 74 1_555 hydrog TYPE_11_PAIR Y A 56 B N7 A 47 1_555 Y G 83 B N2 G 74 1_555 hydrog WATSON-CRICK Y C 57 B N3 C 48 1_555 Y G 82 B N1 G 73 1_555 hydrog WATSON-CRICK Y C 57 B N4 C 48 1_555 Y G 82 B O6 G 73 1_555 hydrog WATSON-CRICK Y C 57 B O2 C 48 1_555 Y G 82 B N2 G 73 1_555 hydrog WATSON-CRICK Y C 58 B N3 C 49 1_555 Y G 81 B N1 G 72 1_555 hydrog WATSON-CRICK Y C 58 B N4 C 49 1_555 Y G 81 B O6 G 72 1_555 hydrog WATSON-CRICK Y C 58 B O2 C 49 1_555 Y G 81 B N2 G 72 1_555 hydrog WATSON-CRICK Y U 59 B N3 U 50 1_555 Y A 80 B N1 A 71 1_555 hydrog WATSON-CRICK Y U 59 B O4 U 50 1_555 Y A 80 B N6 A 71 1_555 hydrog TYPE_6_PAIR Y G 60 B N1 G 51 1_555 Y G 78 B O6 G 69 1_555 hydrog TYPE_6_PAIR Y G 60 B N2 G 51 1_555 Y G 78 B N7 G 69 1_555 hydrog A-C MISPAIR Y A 61 B N6 A 52 1_555 Y C 77 B O2 C 68 1_555 hydrog WATSON-CRICK Y C 63 B N3 C 54 1_555 Y G 76 B N1 G 67 1_555 hydrog WATSON-CRICK Y C 63 B N4 C 54 1_555 Y G 76 B O6 G 67 1_555 hydrog WATSON-CRICK Y C 63 B O2 C 54 1_555 Y G 76 B N2 G 67 1_555 hydrog WATSON-CRICK Y U 64 B N3 U 55 1_555 Y A 75 B N1 A 66 1_555 hydrog WATSON-CRICK Y U 64 B O4 U 55 1_555 Y A 75 B N6 A 66 1_555 hydrog WATSON-CRICK Y G 65 B N1 G 56 1_555 Y C 74 B N3 C 65 1_555 hydrog WATSON-CRICK Y G 65 B N2 G 56 1_555 Y C 74 B O2 C 65 1_555 hydrog WATSON-CRICK Y G 65 B O6 G 56 1_555 Y C 74 B N4 C 65 1_555 hydrog WATSON-CRICK Y G 66 B N1 G 57 1_555 Y C 73 B N3 C 64 1_555 hydrog WATSON-CRICK Y G 66 B N2 G 57 1_555 Y C 73 B O2 C 64 1_555 hydrog WATSON-CRICK Y G 66 B O6 G 57 1_555 Y C 73 B N4 C 64 1_555 RNA riboswitch, thiamine pyrophosphate, RNA 2GDI PDB 1 2GDI 10 89 2GDI 10 89 2GDI X 1 1 80 10 89 2GDI 10 89 2GDI Y 1 1 80 BINDING SITE FOR RESIDUE NA X 121 X NA 121 Software 5 BINDING SITE FOR RESIDUE NA X 122 X NA 122 Software 6 BINDING SITE FOR RESIDUE K X 123 X K 123 Software 4 BINDING SITE FOR RESIDUE K X 124 X K 124 Software 5 BINDING SITE FOR RESIDUE K X 125 X K 125 Software 6 BINDING SITE FOR RESIDUE MG X 101 X MG 101 Software 7 BINDING SITE FOR RESIDUE MG X 102 X MG 102 Software 6 BINDING SITE FOR RESIDUE MG X 103 X MG 103 Software 6 BINDING SITE FOR RESIDUE MG Y 111 Y MG 111 Software 7 BINDING SITE FOR RESIDUE MG Y 112 Y MG 112 Software 5 BINDING SITE FOR RESIDUE MG Y 113 Y MG 113 Software 6 BINDING SITE FOR RESIDUE TPP X 100 X TPP 100 Software 23 BINDING SITE FOR RESIDUE TPP Y 100 Y TPP 100 Software 18 X A 61 A A 52 5 1_555 X HOH 356 P HOH 5 1_555 X HOH 357 P HOH 5 1_555 X HOH 358 P HOH 5 1_555 X HOH 359 P HOH 5 1_555 X U 64 A U 55 6 1_555 X G 65 A G 56 6 1_555 X G 66 A G 57 6 1_555 X HOH 380 P HOH 6 1_555 X HOH 396 P HOH 6 1_555 X HOH 403 P HOH 6 1_555 X G 21 A G 12 4 1_555 X G 72 A G 63 4 1_555 X HOH 360 P HOH 4 1_555 X HOH 361 P HOH 4 1_555 X G 21 A G 12 5 1_555 X C 22 A C 13 5 1_555 X U 71 A U 62 5 1_555 X C 73 A C 64 5 1_555 X HOH 365 P HOH 5 1_555 X C 38 A C 29 6 1_555 X U 39 A U 30 6 1_555 X A 70 A A 61 6 1_555 X U 71 A U 62 6 1_555 X C 73 A C 64 6 1_555 X HOH 376 P HOH 6 1_555 X U 59 A U 50 7 1_555 X G 60 A G 51 7 1_555 X G 78 A G 69 7 1_555 X TPP 100 K TPP 7 1_555 X HOH 488 P HOH 7 1_555 X HOH 489 P HOH 7 1_555 X HOH 490 P HOH 7 1_555 X A 75 A A 66 6 1_555 X TPP 100 K TPP 6 1_555 X HOH 491 P HOH 6 1_555 X HOH 492 P HOH 6 1_555 X HOH 493 P HOH 6 1_555 X HOH 494 P HOH 6 1_555 X A 41 A A 32 6 1_555 X HOH 495 P HOH 6 1_555 X HOH 496 P HOH 6 1_555 X HOH 497 P HOH 6 1_555 X HOH 498 P HOH 6 1_555 X HOH 499 P HOH 6 1_555 Y U 59 B U 50 7 1_555 Y G 60 B G 51 7 1_555 Y G 78 B G 69 7 1_555 Y TPP 100 O TPP 7 1_555 Y HOH 500 Q HOH 7 1_555 Y HOH 501 Q HOH 7 1_555 Y HOH 502 Q HOH 7 1_555 Y TPP 100 O TPP 5 1_555 Y HOH 503 Q HOH 5 1_555 Y HOH 504 Q HOH 5 1_555 Y HOH 505 Q HOH 5 1_555 Y HOH 506 Q HOH 5 1_555 Y A 41 B A 32 6 1_555 Y HOH 507 Q HOH 6 1_555 Y HOH 508 Q HOH 6 1_555 Y HOH 509 Q HOH 6 1_555 Y HOH 510 Q HOH 6 1_555 Y HOH 511 Q HOH 6 1_555 X G 19 A G 10 23 1_555 X G 40 A G 31 23 1_555 X G 42 A G 33 23 1_555 X A 43 A A 34 23 1_555 X C 57 A C 48 23 1_555 X C 58 A C 49 23 1_555 X G 72 A G 63 23 1_555 X C 73 A C 64 23 1_555 X C 77 A C 68 23 1_555 X G 78 A G 69 23 1_555 X MG 101 H MG 23 1_555 X MG 102 I MG 23 1_555 X HOH 381 P HOH 23 1_555 X HOH 387 P HOH 23 1_555 X HOH 406 P HOH 23 1_555 X HOH 429 P HOH 23 1_555 X HOH 443 P HOH 23 1_555 X HOH 458 P HOH 23 1_555 X HOH 488 P HOH 23 1_555 X HOH 489 P HOH 23 1_555 X HOH 492 P HOH 23 1_555 X HOH 493 P HOH 23 1_555 X HOH 494 P HOH 23 1_555 Y G 19 B G 10 18 1_555 Y G 40 B G 31 18 1_555 Y G 42 B G 33 18 1_555 Y A 43 B A 34 18 1_555 Y C 57 B C 48 18 1_555 Y C 58 B C 49 18 1_555 Y G 72 B G 63 18 1_555 Y C 73 B C 64 18 1_555 Y C 77 B C 68 18 1_555 Y G 78 B G 69 18 1_555 Y MG 111 L MG 18 1_555 Y MG 112 M MG 18 1_555 Y HOH 257 Q HOH 18 1_555 Y HOH 339 Q HOH 18 1_555 Y HOH 501 Q HOH 18 1_555 Y HOH 503 Q HOH 18 1_555 Y HOH 505 Q HOH 18 1_555 Y HOH 506 Q HOH 18 1_555 5 C 1 2 1