1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Cierpicki, T.
Liang, B.
Tamm, L.K.
Bushweller, J.H.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Am.Chem.Soc.
JACSAT
0004
0002-7863
128
6947
6951
10.1021/ja0608343
16719475
Increasing the accuracy of solution NMR structures of membrane proteins by application of residual dipolar couplings. High-resolution structure of outer membrane protein A.
2006
10.2210/pdb2ge4/pdb
pdb_00002ge4
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
19192.178
Outer membrane protein A
transmembrane domain
W15F, W57F, W102F, W143F
1
man
polymer
Outer membrane protein II*
no
no
MAPKDNTWYTGAKLGFSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDFLGRMPYKGSVENGAYKAQGVQL
TAKLGYPITDDLDIYTRLGGMVFRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQFTNNIGDAHTIGTRPDN
GMLSLGVSYRFGQGEAA
MAPKDNTWYTGAKLGFSQYHDTGFINNNGPTHENQLGAGAFGGYQVNPYVGFEMGYDFLGRMPYKGSVENGAYKAQGVQL
TAKLGYPITDDLDIYTRLGGMVFRADTKSNVYGKNHDTGVSPVFAGGVEYAITPEIATRLEYQFTNNIGDAHTIGTRPDN
GMLSLGVSYRFGQGEAA
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
ompA, con, tolG, tut
562
Escherichia coli
562
Escherichia coli
database_2
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Database references
Derived calculations
1
0
2006-04-11
1
1
2008-05-01
1
2
2011-07-13
1
3
2021-10-20
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
lower accuracy NMR structure of the same protein
RCSB
Y
RCSB
2006-03-17
REL
distance restraints, hydrogen bonds and dihedral angles were the same as for previous NMR structure (PDB code 1g90)
structures with the lowest energy
150
10
HNCO based experiment for measurement 1JHN couplings
HNCO based experiment for measurement 1JNC' couplings
HNCO based experiment for measurement 1JC'Ca couplings
50mM NaCl
6.3
ambient
223
K
refinement using RDCs
simulated annealing
1
lowest energy
1mM OmpA U-2H,13C,15N; 500mM DPC; 10mM phosphate buffer; pH 6.3; 50mM NaCl
90% H2O/10% D2O
Brunger
refinement
CNS
1.1
600
Varian
INOVA
MET
0
n
1
MET
0
A
ALA
1
n
2
ALA
1
A
PRO
2
n
3
PRO
2
A
LYS
3
n
4
LYS
3
A
ASP
4
n
5
ASP
4
A
ASN
5
n
6
ASN
5
A
THR
6
n
7
THR
6
A
TRP
7
n
8
TRP
7
A
TYR
8
n
9
TYR
8
A
THR
9
n
10
THR
9
A
GLY
10
n
11
GLY
10
A
ALA
11
n
12
ALA
11
A
LYS
12
n
13
LYS
12
A
LEU
13
n
14
LEU
13
A
GLY
14
n
15
GLY
14
A
PHE
15
n
16
PHE
15
A
SER
16
n
17
SER
16
A
GLN
17
n
18
GLN
17
A
TYR
18
n
19
TYR
18
A
HIS
19
n
20
HIS
19
A
ASP
20
n
21
ASP
20
A
THR
21
n
22
THR
21
A
GLY
22
n
23
GLY
22
A
PHE
23
n
24
PHE
23
A
ILE
24
n
25
ILE
24
A
ASN
25
n
26
ASN
25
A
ASN
26
n
27
ASN
26
A
ASN
27
n
28
ASN
27
A
GLY
28
n
29
GLY
28
A
PRO
29
n
30
PRO
29
A
THR
30
n
31
THR
30
A
HIS
31
n
32
HIS
31
A
GLU
32
n
33
GLU
32
A
ASN
33
n
34
ASN
33
A
GLN
34
n
35
GLN
34
A
LEU
35
n
36
LEU
35
A
GLY
36
n
37
GLY
36
A
ALA
37
n
38
ALA
37
A
GLY
38
n
39
GLY
38
A
ALA
39
n
40
ALA
39
A
PHE
40
n
41
PHE
40
A
GLY
41
n
42
GLY
41
A
GLY
42
n
43
GLY
42
A
TYR
43
n
44
TYR
43
A
GLN
44
n
45
GLN
44
A
VAL
45
n
46
VAL
45
A
ASN
46
n
47
ASN
46
A
PRO
47
n
48
PRO
47
A
TYR
48
n
49
TYR
48
A
VAL
49
n
50
VAL
49
A
GLY
50
n
51
GLY
50
A
PHE
51
n
52
PHE
51
A
GLU
52
n
53
GLU
52
A
MET
53
n
54
MET
53
A
GLY
54
n
55
GLY
54
A
TYR
55
n
56
TYR
55
A
ASP
56
n
57
ASP
56
A
PHE
57
n
58
PHE
57
A
LEU
58
n
59
LEU
58
A
GLY
59
n
60
GLY
59
A
ARG
60
n
61
ARG
60
A
MET
61
n
62
MET
61
A
PRO
62
n
63
PRO
62
A
TYR
63
n
64
TYR
63
A
LYS
64
n
65
LYS
64
A
GLY
65
n
66
GLY
65
A
SER
66
n
67
SER
66
A
VAL
67
n
68
VAL
67
A
GLU
68
n
69
GLU
68
A
ASN
69
n
70
ASN
69
A
GLY
70
n
71
GLY
70
A
ALA
71
n
72
ALA
71
A
TYR
72
n
73
TYR
72
A
LYS
73
n
74
LYS
73
A
ALA
74
n
75
ALA
74
A
GLN
75
n
76
GLN
75
A
GLY
76
n
77
GLY
76
A
VAL
77
n
78
VAL
77
A
GLN
78
n
79
GLN
78
A
LEU
79
n
80
LEU
79
A
THR
80
n
81
THR
80
A
ALA
81
n
82
ALA
81
A
LYS
82
n
83
LYS
82
A
LEU
83
n
84
LEU
83
A
GLY
84
n
85
GLY
84
A
TYR
85
n
86
TYR
85
A
PRO
86
n
87
PRO
86
A
ILE
87
n
88
ILE
87
A
THR
88
n
89
THR
88
A
ASP
89
n
90
ASP
89
A
ASP
90
n
91
ASP
90
A
LEU
91
n
92
LEU
91
A
ASP
92
n
93
ASP
92
A
ILE
93
n
94
ILE
93
A
TYR
94
n
95
TYR
94
A
THR
95
n
96
THR
95
A
ARG
96
n
97
ARG
96
A
LEU
97
n
98
LEU
97
A
GLY
98
n
99
GLY
98
A
GLY
99
n
100
GLY
99
A
MET
100
n
101
MET
100
A
VAL
101
n
102
VAL
101
A
PHE
102
n
103
PHE
102
A
ARG
103
n
104
ARG
103
A
ALA
104
n
105
ALA
104
A
ASP
105
n
106
ASP
105
A
THR
106
n
107
THR
106
A
LYS
107
n
108
LYS
107
A
SER
108
n
109
SER
108
A
ASN
109
n
110
ASN
109
A
VAL
110
n
111
VAL
110
A
TYR
111
n
112
TYR
111
A
GLY
112
n
113
GLY
112
A
LYS
113
n
114
LYS
113
A
ASN
114
n
115
ASN
114
A
HIS
115
n
116
HIS
115
A
ASP
116
n
117
ASP
116
A
THR
117
n
118
THR
117
A
GLY
118
n
119
GLY
118
A
VAL
119
n
120
VAL
119
A
SER
120
n
121
SER
120
A
PRO
121
n
122
PRO
121
A
VAL
122
n
123
VAL
122
A
PHE
123
n
124
PHE
123
A
ALA
124
n
125
ALA
124
A
GLY
125
n
126
GLY
125
A
GLY
126
n
127
GLY
126
A
VAL
127
n
128
VAL
127
A
GLU
128
n
129
GLU
128
A
TYR
129
n
130
TYR
129
A
ALA
130
n
131
ALA
130
A
ILE
131
n
132
ILE
131
A
THR
132
n
133
THR
132
A
PRO
133
n
134
PRO
133
A
GLU
134
n
135
GLU
134
A
ILE
135
n
136
ILE
135
A
ALA
136
n
137
ALA
136
A
THR
137
n
138
THR
137
A
ARG
138
n
139
ARG
138
A
LEU
139
n
140
LEU
139
A
GLU
140
n
141
GLU
140
A
TYR
141
n
142
TYR
141
A
GLN
142
n
143
GLN
142
A
PHE
143
n
144
PHE
143
A
THR
144
n
145
THR
144
A
ASN
145
n
146
ASN
145
A
ASN
146
n
147
ASN
146
A
ILE
147
n
148
ILE
147
A
GLY
148
n
149
GLY
148
A
ASP
149
n
150
ASP
149
A
ALA
150
n
151
ALA
150
A
HIS
151
n
152
HIS
151
A
THR
152
n
153
THR
152
A
ILE
153
n
154
ILE
153
A
GLY
154
n
155
GLY
154
A
THR
155
n
156
THR
155
A
ARG
156
n
157
ARG
156
A
PRO
157
n
158
PRO
157
A
ASP
158
n
159
ASP
158
A
ASN
159
n
160
ASN
159
A
GLY
160
n
161
GLY
160
A
MET
161
n
162
MET
161
A
LEU
162
n
163
LEU
162
A
SER
163
n
164
SER
163
A
LEU
164
n
165
LEU
164
A
GLY
165
n
166
GLY
165
A
VAL
166
n
167
VAL
166
A
SER
167
n
168
SER
167
A
TYR
168
n
169
TYR
168
A
ARG
169
n
170
ARG
169
A
PHE
170
n
171
PHE
170
A
GLY
171
n
172
GLY
171
A
GLN
172
n
173
GLN
172
A
GLY
173
n
174
GLY
173
A
GLU
174
n
175
GLU
174
A
ALA
175
n
176
ALA
175
A
ALA
176
n
177
ALA
176
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
GLY
14
A
N
GLY
15
A
O
GLY
36
A
O
GLY
37
A
N
GLY
41
A
N
GLY
42
A
O
MET
53
A
O
MET
54
A
N
GLU
52
A
N
GLU
53
A
O
THR
80
A
O
THR
81
A
N
LEU
83
A
N
LEU
84
A
O
THR
95
A
O
THR
96
A
N
ARG
96
A
N
ARG
97
A
O
ALA
124
A
O
ALA
125
A
N
GLY
125
A
N
GLY
126
A
O
TYR
141
A
O
TYR
142
A
N
GLN
142
A
N
GLN
143
A
O
MET
161
A
O
MET
162
A
O
TYR
168
A
O
TYR
169
A
N
THR
9
A
N
THR
10
4
A
A
O
H
THR
TYR
9
168
1.60
1
A
ASP
20
-98.30
36.05
1
A
ASN
25
-153.29
35.85
1
A
THR
30
-127.48
-71.99
1
A
HIS
31
-147.89
-68.26
1
A
ASN
33
-177.20
116.05
1
A
PHE
57
-67.15
-170.05
1
A
LYS
64
-172.45
129.14
1
A
LYS
107
60.26
105.14
1
A
ASN
109
-99.41
30.80
1
A
ASP
116
-162.17
118.73
1
A
GLU
134
58.54
19.01
1
A
ASN
146
-175.82
37.14
1
A
ASP
158
-145.46
35.90
1
A
ASN
159
-174.76
128.04
1
A
GLU
174
-140.90
-51.39
1
A
ALA
175
-106.92
-64.11
2
A
ASP
4
-140.06
28.78
2
A
ASN
5
-64.12
67.05
2
A
PHE
23
-174.75
137.97
2
A
HIS
31
-167.23
33.53
2
A
GLN
34
166.20
142.31
2
A
LEU
35
-156.47
-70.47
2
A
PHE
57
-86.28
-71.87
2
A
MET
61
-157.36
88.28
2
A
PRO
62
-52.60
-175.62
2
A
TYR
63
-159.57
-45.15
2
A
ALA
71
59.81
177.99
2
A
SER
108
-166.15
32.77
2
A
HIS
115
60.30
178.29
2
A
ASP
116
-168.83
33.78
2
A
SER
120
-171.56
149.22
2
A
GLU
134
59.71
17.72
2
A
THR
144
-160.88
78.47
2
A
ASP
149
-162.94
83.79
2
A
ASP
158
-152.17
77.82
2
A
ASN
159
-151.58
35.71
3
A
LYS
3
-176.89
-40.25
3
A
ASN
25
-162.53
-45.15
3
A
PRO
29
-52.75
-175.17
3
A
ASN
33
-171.84
118.85
3
A
GLN
34
167.56
144.68
3
A
LEU
35
-158.08
-71.75
3
A
LEU
58
-94.01
-66.48
3
A
SER
66
60.20
175.90
3
A
VAL
67
-144.60
-47.24
3
A
LYS
73
-131.05
-60.99
3
A
ALA
74
-175.27
148.07
3
A
LYS
107
-163.47
31.44
3
A
SER
108
-142.08
-54.66
3
A
LYS
113
-156.78
-65.18
3
A
ASN
145
62.04
152.20
3
A
ASN
146
-168.98
-43.02
3
A
GLU
174
-151.62
-50.93
3
A
ALA
175
-149.22
-67.56
4
A
PRO
2
-69.80
68.60
4
A
ASP
4
-87.88
-79.21
4
A
GLN
17
62.87
73.69
4
A
HIS
19
-173.11
93.37
4
A
PHE
23
-176.15
88.60
4
A
ASN
27
-136.38
-47.03
4
A
THR
30
-153.35
-54.70
4
A
ASN
33
63.59
130.76
4
A
GLN
34
166.60
142.66
4
A
LEU
35
-156.51
-72.14
4
A
SER
66
-171.36
111.91
4
A
ALA
71
-99.20
31.23
4
A
TYR
72
-175.78
-169.45
4
A
SER
108
-132.03
-71.87
4
A
VAL
110
-98.90
31.07
4
A
ILE
147
62.90
147.16
4
A
ALA
150
-172.39
-63.88
4
A
HIS
151
-131.01
-60.26
4
A
ASP
158
-136.51
-60.43
4
A
ALA
175
60.52
106.44
5
A
ALA
1
59.97
84.43
5
A
ASP
4
-173.42
100.25
5
A
ASN
5
59.31
-135.06
5
A
HIS
19
-112.99
-169.55
5
A
PHE
23
60.56
98.83
5
A
GLU
32
-96.63
-68.65
5
A
VAL
45
-96.24
-84.28
5
A
TYR
48
59.88
16.32
5
A
ARG
60
-142.92
-68.14
5
A
TYR
63
-168.15
96.72
5
A
LYS
64
-138.33
-61.39
5
A
SER
66
60.14
79.96
5
A
THR
106
60.29
93.82
5
A
ASN
146
-161.78
32.37
5
A
ILE
147
-98.13
31.70
5
A
ASP
158
-98.72
31.80
5
A
ASN
159
-175.26
96.76
5
A
MET
161
61.96
-82.51
6
A
ALA
1
-175.35
89.05
6
A
ASP
4
-166.55
32.71
6
A
ASP
20
-167.86
33.60
6
A
ASN
25
60.63
166.62
6
A
THR
30
-145.07
-58.54
6
A
TYR
48
58.38
18.37
6
A
PHE
57
-122.53
-66.25
6
A
LYS
73
-174.38
-41.26
6
A
ALA
74
60.47
173.83
6
A
LYS
107
-164.02
-44.71
6
A
SER
108
-139.16
-49.32
6
A
LYS
113
-169.47
35.15
6
A
HIS
115
-61.37
85.67
6
A
ASP
116
-106.38
-60.55
6
A
THR
117
57.67
106.98
6
A
SER
120
-177.50
143.91
6
A
ASN
145
60.31
109.65
6
A
ASP
149
-170.85
-179.19
6
A
ALA
150
-64.32
89.39
6
A
GLU
174
60.48
170.39
7
A
ALA
1
-175.62
102.00
7
A
PHE
15
170.84
-92.53
7
A
SER
16
-177.58
128.28
7
A
GLN
17
-151.18
84.14
7
A
HIS
19
60.10
-179.66
7
A
ASP
20
-147.00
31.70
7
A
THR
21
60.40
101.71
7
A
ASN
26
-132.51
-67.05
7
A
ASN
27
-107.36
77.39
7
A
LEU
58
60.48
92.56
7
A
MET
61
-174.04
87.20
7
A
SER
66
61.03
110.39
7
A
LYS
73
-97.50
38.22
7
A
GLN
75
62.90
-169.01
7
A
THR
106
-144.88
-49.79
7
A
VAL
110
69.02
-67.14
7
A
GLN
142
-160.93
115.94
7
A
ASN
145
-98.13
35.94
7
A
ILE
147
-133.69
-49.42
7
A
ASP
149
-133.23
-68.19
7
A
ALA
150
59.92
169.65
7
A
THR
152
60.47
162.13
7
A
ASN
159
-177.49
82.69
7
A
MET
161
59.98
-84.71
7
A
GLU
174
-131.42
-54.74
8
A
ASN
5
-68.51
-124.95
8
A
GLN
17
61.79
84.76
8
A
PRO
29
-69.62
97.17
8
A
HIS
31
-176.78
37.69
8
A
LEU
58
68.81
-67.22
8
A
TYR
63
-60.23
-72.60
8
A
LYS
64
-164.91
35.99
8
A
VAL
67
-135.50
-46.67
8
A
ASN
69
60.58
158.54
8
A
LYS
107
-150.65
-49.35
8
A
VAL
110
-138.34
-46.98
8
A
HIS
115
-142.22
-47.56
8
A
SER
120
-176.92
88.62
8
A
GLU
134
58.54
19.53
8
A
THR
144
60.48
94.95
8
A
ASN
145
-133.27
-52.74
8
A
ASP
158
-168.37
-57.73
8
A
ASN
159
60.59
91.05
9
A
PRO
2
-69.84
99.09
9
A
PHE
15
171.11
-90.82
9
A
SER
16
-177.54
125.75
9
A
GLN
17
-135.34
-52.92
9
A
ILE
24
-67.52
90.91
9
A
TYR
48
59.17
17.68
9
A
LYS
64
-148.49
31.24
9
A
TYR
72
-137.95
-56.96
9
A
ALA
74
60.15
85.67
9
A
THR
106
-98.83
31.73
9
A
VAL
110
62.64
101.30
9
A
LYS
113
-145.24
-48.34
9
A
ASP
116
60.48
172.68
9
A
THR
117
53.59
78.34
9
A
ASN
146
-176.53
-40.60
9
A
ASP
149
-107.14
79.45
9
A
ALA
150
-172.92
109.70
9
A
HIS
151
60.58
-176.28
9
A
THR
152
-98.95
31.61
9
A
ASN
159
-166.07
112.99
9
A
GLN
172
-162.04
-168.36
10
A
ALA
1
-175.10
89.05
10
A
LYS
3
-153.46
-76.38
10
A
ASP
4
-75.65
-83.23
10
A
GLN
17
62.28
117.27
10
A
TYR
18
-138.15
-52.19
10
A
HIS
19
60.13
170.51
10
A
ASP
20
-141.08
-48.44
10
A
ASN
26
60.61
166.67
10
A
THR
30
60.64
82.57
10
A
HIS
31
60.42
102.74
10
A
TYR
63
-176.95
-66.61
10
A
SER
66
-98.59
35.48
10
A
GLU
68
-144.93
33.30
10
A
TYR
72
-169.48
90.89
10
A
LYS
107
60.59
-177.88
10
A
HIS
115
-67.59
-177.44
10
A
VAL
119
-57.08
-74.86
10
A
SER
120
177.08
-67.80
10
A
PRO
121
-38.03
112.13
10
A
THR
152
-131.18
-46.26
10
A
ASN
159
-167.92
92.77
High-resolution solution structure of outer membrane protein A transmembrane domain
1
N
N
MEMBRANE PROTEIN
membrane protein, beta barrel
OMPA_ECOLI
UNP
1
22
P0A910
22
197
2GE4
1
176
P0A910
A
1
2
177
1
initiating methionine
MET
0
2GE4
A
P0A910
UNP
1
1
TRP
engineered mutation
PHE
15
2GE4
A
P0A910
UNP
36
16
1
TRP
engineered mutation
PHE
57
2GE4
A
P0A910
UNP
78
58
1
TRP
engineered mutation
PHE
102
2GE4
A
P0A910
UNP
123
103
1
TRP
engineered mutation
PHE
143
2GE4
A
P0A910
UNP
164
144
9
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
THR
6
A
THR
7
A
SER
16
A
SER
17
A
GLN
34
A
GLN
35
A
GLN
44
A
GLN
45
A
GLY
50
A
GLY
51
A
TYR
55
A
TYR
56
A
GLN
75
A
GLN
76
A
TYR
85
A
TYR
86
A
LEU
91
A
LEU
92
A
ARG
103
A
ARG
104
A
GLY
118
A
GLY
119
A
THR
132
A
THR
133
A
ILE
135
A
ILE
136
A
GLN
142
A
GLN
143
A
MET
161
A
MET
162
A
PHE
170
A
PHE
171
A
THR
6
A
THR
7
A
SER
16
A
SER
17