0.020789
0.000000
0.000000
0.000000
0.012519
0.000000
0.000000
0.000000
0.022409
0.00000
0.00000
0.00000
Osipiuk, J.
Volkart, L.
Bargassa, M.
Joachimiak, A.
Midwest Center for Structural Genomics (MCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.00
90.00
90.00
48.102
79.877
44.624
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C2 H6 O S
78.133
BETA-MERCAPTOETHANOL
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C2 H6 O2
62.068
1,2-ETHANEDIOL
ETHYLENE GLYCOL
non-polymer
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
Na 1
22.990
SODIUM ION
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be Published
0353
X-ray crystal structure of hypothetical protein NMB0488 from Neisseria meningitidis.
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
2006-02-08
SBC-3
double crystal monochromator
SINGLE WAVELENGTH
M
x-ray
1
0.97923
1.0
19-BM
APS
0.97923
SYNCHROTRON
APS BEAMLINE 19-BM
19279.164
hypothetical protein NMB0488
1
man
polymer
22.990
SODIUM ION
1
syn
non-polymer
62.068
1,2-ETHANEDIOL
1
syn
non-polymer
78.133
BETA-MERCAPTOETHANOL
1
syn
non-polymer
18.015
water
392
nat
water
no
yes
SNA(MSE)TFNQEQDYWAGYKANERALIIQTWSGFGRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQ
DFFDTEKIRQRYEDWVAKLCGNLGYKTRRALFKN(MSE)(MSE)SVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSL
DNSPEEIGAGLKLALSRCR
SNAMTFNQEQDYWAGYKANERALIIQTWSGFGRYAPDHLYPPHILPLDTDNETLGTTVLQALANSRTFVYDSPEDQDFFD
TEKIRQRYEDWVAKLCGNLGYKTRRALFKNMMSVDIWLHNGCLKISPSRHVKLEAWDAIDADDVILSLDNSPEEIGAGLK
LALSRCR
A
APC83854
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Neisseria
Neisseria meningitidis
MC58
Escherichia
Escherichia coli
sample
NMB0488
122586
Neisseria meningitidis
469008
Escherichia coli BL21(DE3)
BL21(DE3)
plasmid
pMCSG7
1
2.22
44.66
VAPOR DIFFUSION, SITTING DROP
7.5
0.1 M Hepes buffer, 25% PEG 3350, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 291K
291
Midwest Center for Structural Genomics
MCSG
PSI, Protein Structure Initiative
pdbx_distant_solvent_atoms
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Source and taxonomy
Version format compliance
Advisory
Database references
Derived calculations
1
0
2006-05-02
1
1
2008-05-01
1
2
2011-07-13
1
3
2021-03-10
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
REMARK 300 BIOMOLECULE: 1
REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT
REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). THE BIOLOGICAL UNIT OF THIS
PROTEIN IS UNKNOWN.
Y
RCSB
Y
RCSB
2006-04-03
REL
REL
1
A
O
HOH
649
6.41
1
A
O
HOH
651
5.87
1
A
O
HOH
686
6.13
1
A
O
HOH
689
5.92
1
A
O
HOH
717
6.40
1
A
O
HOH
724
6.29
1
A
O
HOH
753
6.39
1
A
O
HOH
756
6.57
1
A
O
HOH
759
6.25
NA
SODIUM ION
EDO
1,2-ETHANEDIOL
BME
BETA-MERCAPTOETHANOL
HOH
water
NA
203
2
NA
NA
403
A
EDO
202
3
EDO
EDO
402
A
SEO
201
4
BME
BME
401
A
HOH
1
5
HOH
HOH
404
A
HOH
2
5
HOH
HOH
405
A
HOH
3
5
HOH
HOH
406
A
HOH
4
5
HOH
HOH
407
A
HOH
5
5
HOH
HOH
408
A
HOH
6
5
HOH
HOH
409
A
HOH
7
5
HOH
HOH
410
A
HOH
8
5
HOH
HOH
411
A
HOH
9
5
HOH
HOH
412
A
HOH
10
5
HOH
HOH
413
A
HOH
11
5
HOH
HOH
414
A
HOH
12
5
HOH
HOH
415
A
HOH
13
5
HOH
HOH
416
A
HOH
14
5
HOH
HOH
417
A
HOH
15
5
HOH
HOH
418
A
HOH
16
5
HOH
HOH
419
A
HOH
17
5
HOH
HOH
420
A
HOH
18
5
HOH
HOH
421
A
HOH
19
5
HOH
HOH
422
A
HOH
20
5
HOH
HOH
423
A
HOH
21
5
HOH
HOH
424
A
HOH
22
5
HOH
HOH
425
A
HOH
23
5
HOH
HOH
426
A
HOH
24
5
HOH
HOH
427
A
HOH
25
5
HOH
HOH
428
A
HOH
26
5
HOH
HOH
429
A
HOH
27
5
HOH
HOH
430
A
HOH
28
5
HOH
HOH
431
A
HOH
29
5
HOH
HOH
432
A
HOH
30
5
HOH
HOH
433
A
HOH
31
5
HOH
HOH
434
A
HOH
32
5
HOH
HOH
435
A
HOH
33
5
HOH
HOH
436
A
HOH
34
5
HOH
HOH
437
A
HOH
35
5
HOH
HOH
438
A
HOH
36
5
HOH
HOH
439
A
HOH
37
5
HOH
HOH
440
A
HOH
38
5
HOH
HOH
441
A
HOH
39
5
HOH
HOH
442
A
HOH
40
5
HOH
HOH
443
A
HOH
41
5
HOH
HOH
444
A
HOH
42
5
HOH
HOH
445
A
HOH
43
5
HOH
HOH
446
A
HOH
44
5
HOH
HOH
447
A
HOH
45
5
HOH
HOH
448
A
HOH
46
5
HOH
HOH
449
A
HOH
47
5
HOH
HOH
450
A
HOH
48
5
HOH
HOH
451
A
HOH
49
5
HOH
HOH
452
A
HOH
50
5
HOH
HOH
453
A
HOH
51
5
HOH
HOH
454
A
HOH
52
5
HOH
HOH
455
A
HOH
53
5
HOH
HOH
456
A
HOH
54
5
HOH
HOH
457
A
HOH
55
5
HOH
HOH
458
A
HOH
56
5
HOH
HOH
459
A
HOH
57
5
HOH
HOH
460
A
HOH
58
5
HOH
HOH
461
A
HOH
59
5
HOH
HOH
462
A
HOH
60
5
HOH
HOH
463
A
HOH
61
5
HOH
HOH
464
A
HOH
62
5
HOH
HOH
465
A
HOH
63
5
HOH
HOH
466
A
HOH
64
5
HOH
HOH
467
A
HOH
65
5
HOH
HOH
468
A
HOH
66
5
HOH
HOH
469
A
HOH
67
5
HOH
HOH
470
A
HOH
68
5
HOH
HOH
471
A
HOH
69
5
HOH
HOH
472
A
HOH
70
5
HOH
HOH
473
A
HOH
71
5
HOH
HOH
474
A
HOH
72
5
HOH
HOH
475
A
HOH
73
5
HOH
HOH
476
A
HOH
74
5
HOH
HOH
477
A
HOH
75
5
HOH
HOH
478
A
HOH
76
5
HOH
HOH
479
A
HOH
77
5
HOH
HOH
480
A
HOH
78
5
HOH
HOH
481
A
HOH
79
5
HOH
HOH
482
A
HOH
80
5
HOH
HOH
483
A
HOH
81
5
HOH
HOH
484
A
HOH
82
5
HOH
HOH
485
A
HOH
83
5
HOH
HOH
486
A
HOH
84
5
HOH
HOH
487
A
HOH
85
5
HOH
HOH
488
A
HOH
86
5
HOH
HOH
489
A
HOH
87
5
HOH
HOH
490
A
HOH
88
5
HOH
HOH
491
A
HOH
89
5
HOH
HOH
492
A
HOH
90
5
HOH
HOH
493
A
HOH
91
5
HOH
HOH
494
A
HOH
92
5
HOH
HOH
495
A
HOH
93
5
HOH
HOH
496
A
HOH
94
5
HOH
HOH
497
A
HOH
95
5
HOH
HOH
498
A
HOH
96
5
HOH
HOH
499
A
HOH
97
5
HOH
HOH
500
A
HOH
98
5
HOH
HOH
501
A
HOH
99
5
HOH
HOH
502
A
HOH
100
5
HOH
HOH
503
A
HOH
101
5
HOH
HOH
504
A
HOH
102
5
HOH
HOH
505
A
HOH
103
5
HOH
HOH
506
A
HOH
104
5
HOH
HOH
507
A
HOH
105
5
HOH
HOH
508
A
HOH
106
5
HOH
HOH
509
A
HOH
107
5
HOH
HOH
510
A
HOH
108
5
HOH
HOH
511
A
HOH
109
5
HOH
HOH
512
A
HOH
110
5
HOH
HOH
513
A
HOH
111
5
HOH
HOH
514
A
HOH
112
5
HOH
HOH
515
A
HOH
113
5
HOH
HOH
516
A
HOH
114
5
HOH
HOH
517
A
HOH
115
5
HOH
HOH
518
A
HOH
116
5
HOH
HOH
519
A
HOH
117
5
HOH
HOH
520
A
HOH
118
5
HOH
HOH
521
A
HOH
119
5
HOH
HOH
522
A
HOH
120
5
HOH
HOH
523
A
HOH
121
5
HOH
HOH
524
A
HOH
122
5
HOH
HOH
525
A
HOH
123
5
HOH
HOH
526
A
HOH
124
5
HOH
HOH
527
A
HOH
125
5
HOH
HOH
528
A
HOH
126
5
HOH
HOH
529
A
HOH
127
5
HOH
HOH
530
A
HOH
128
5
HOH
HOH
531
A
HOH
129
5
HOH
HOH
532
A
HOH
130
5
HOH
HOH
533
A
HOH
131
5
HOH
HOH
534
A
HOH
132
5
HOH
HOH
535
A
HOH
133
5
HOH
HOH
536
A
HOH
134
5
HOH
HOH
537
A
HOH
135
5
HOH
HOH
538
A
HOH
136
5
HOH
HOH
539
A
HOH
137
5
HOH
HOH
540
A
HOH
138
5
HOH
HOH
541
A
HOH
139
5
HOH
HOH
542
A
HOH
140
5
HOH
HOH
543
A
HOH
141
5
HOH
HOH
544
A
HOH
142
5
HOH
HOH
545
A
HOH
143
5
HOH
HOH
546
A
HOH
144
5
HOH
HOH
547
A
HOH
145
5
HOH
HOH
548
A
HOH
146
5
HOH
HOH
549
A
HOH
147
5
HOH
HOH
550
A
HOH
148
5
HOH
HOH
551
A
HOH
149
5
HOH
HOH
552
A
HOH
150
5
HOH
HOH
553
A
HOH
151
5
HOH
HOH
554
A
HOH
152
5
HOH
HOH
555
A
HOH
153
5
HOH
HOH
556
A
HOH
154
5
HOH
HOH
557
A
HOH
155
5
HOH
HOH
558
A
HOH
156
5
HOH
HOH
559
A
HOH
157
5
HOH
HOH
560
A
HOH
158
5
HOH
HOH
561
A
HOH
159
5
HOH
HOH
562
A
HOH
160
5
HOH
HOH
563
A
HOH
161
5
HOH
HOH
564
A
HOH
162
5
HOH
HOH
565
A
HOH
163
5
HOH
HOH
566
A
HOH
164
5
HOH
HOH
567
A
HOH
165
5
HOH
HOH
568
A
HOH
166
5
HOH
HOH
569
A
HOH
167
5
HOH
HOH
570
A
HOH
168
5
HOH
HOH
571
A
HOH
169
5
HOH
HOH
572
A
HOH
170
5
HOH
HOH
573
A
HOH
171
5
HOH
HOH
574
A
HOH
172
5
HOH
HOH
575
A
HOH
173
5
HOH
HOH
576
A
HOH
174
5
HOH
HOH
577
A
HOH
175
5
HOH
HOH
578
A
HOH
176
5
HOH
HOH
579
A
HOH
177
5
HOH
HOH
580
A
HOH
178
5
HOH
HOH
581
A
HOH
179
5
HOH
HOH
582
A
HOH
180
5
HOH
HOH
583
A
HOH
181
5
HOH
HOH
584
A
HOH
182
5
HOH
HOH
585
A
HOH
183
5
HOH
HOH
586
A
HOH
184
5
HOH
HOH
587
A
HOH
185
5
HOH
HOH
588
A
HOH
186
5
HOH
HOH
589
A
HOH
187
5
HOH
HOH
590
A
HOH
188
5
HOH
HOH
591
A
HOH
189
5
HOH
HOH
592
A
HOH
190
5
HOH
HOH
593
A
HOH
191
5
HOH
HOH
594
A
HOH
192
5
HOH
HOH
595
A
HOH
193
5
HOH
HOH
596
A
HOH
194
5
HOH
HOH
597
A
HOH
195
5
HOH
HOH
598
A
HOH
196
5
HOH
HOH
599
A
HOH
197
5
HOH
HOH
600
A
HOH
198
5
HOH
HOH
601
A
HOH
199
5
HOH
HOH
602
A
HOH
200
5
HOH
HOH
603
A
HOH
201
5
HOH
HOH
604
A
HOH
202
5
HOH
HOH
605
A
HOH
203
5
HOH
HOH
606
A
HOH
204
5
HOH
HOH
607
A
HOH
205
5
HOH
HOH
608
A
HOH
206
5
HOH
HOH
609
A
HOH
207
5
HOH
HOH
610
A
HOH
208
5
HOH
HOH
611
A
HOH
209
5
HOH
HOH
612
A
HOH
210
5
HOH
HOH
613
A
HOH
211
5
HOH
HOH
614
A
HOH
212
5
HOH
HOH
615
A
HOH
213
5
HOH
HOH
616
A
HOH
214
5
HOH
HOH
617
A
HOH
215
5
HOH
HOH
618
A
HOH
216
5
HOH
HOH
619
A
HOH
217
5
HOH
HOH
620
A
HOH
218
5
HOH
HOH
621
A
HOH
219
5
HOH
HOH
622
A
HOH
220
5
HOH
HOH
623
A
HOH
221
5
HOH
HOH
624
A
HOH
222
5
HOH
HOH
625
A
HOH
223
5
HOH
HOH
626
A
HOH
224
5
HOH
HOH
627
A
HOH
225
5
HOH
HOH
628
A
HOH
226
5
HOH
HOH
629
A
HOH
227
5
HOH
HOH
630
A
HOH
228
5
HOH
HOH
631
A
HOH
229
5
HOH
HOH
632
A
HOH
230
5
HOH
HOH
633
A
HOH
231
5
HOH
HOH
634
A
HOH
232
5
HOH
HOH
635
A
HOH
233
5
HOH
HOH
636
A
HOH
234
5
HOH
HOH
637
A
HOH
235
5
HOH
HOH
638
A
HOH
236
5
HOH
HOH
639
A
HOH
237
5
HOH
HOH
640
A
HOH
238
5
HOH
HOH
641
A
HOH
239
5
HOH
HOH
642
A
HOH
240
5
HOH
HOH
643
A
HOH
241
5
HOH
HOH
644
A
HOH
242
5
HOH
HOH
645
A
HOH
243
5
HOH
HOH
646
A
HOH
244
5
HOH
HOH
647
A
HOH
245
5
HOH
HOH
648
A
HOH
246
5
HOH
HOH
649
A
HOH
247
5
HOH
HOH
650
A
HOH
248
5
HOH
HOH
651
A
HOH
249
5
HOH
HOH
652
A
HOH
250
5
HOH
HOH
653
A
HOH
251
5
HOH
HOH
654
A
HOH
252
5
HOH
HOH
655
A
HOH
253
5
HOH
HOH
656
A
HOH
254
5
HOH
HOH
657
A
HOH
255
5
HOH
HOH
658
A
HOH
256
5
HOH
HOH
659
A
HOH
257
5
HOH
HOH
660
A
HOH
258
5
HOH
HOH
661
A
HOH
259
5
HOH
HOH
662
A
HOH
260
5
HOH
HOH
663
A
HOH
261
5
HOH
HOH
664
A
HOH
262
5
HOH
HOH
665
A
HOH
263
5
HOH
HOH
666
A
HOH
264
5
HOH
HOH
667
A
HOH
265
5
HOH
HOH
668
A
HOH
266
5
HOH
HOH
669
A
HOH
267
5
HOH
HOH
670
A
HOH
268
5
HOH
HOH
671
A
HOH
269
5
HOH
HOH
672
A
HOH
270
5
HOH
HOH
673
A
HOH
271
5
HOH
HOH
674
A
HOH
272
5
HOH
HOH
675
A
HOH
273
5
HOH
HOH
676
A
HOH
274
5
HOH
HOH
677
A
HOH
275
5
HOH
HOH
678
A
HOH
276
5
HOH
HOH
679
A
HOH
277
5
HOH
HOH
680
A
HOH
278
5
HOH
HOH
681
A
HOH
279
5
HOH
HOH
682
A
HOH
280
5
HOH
HOH
683
A
HOH
281
5
HOH
HOH
684
A
HOH
282
5
HOH
HOH
685
A
HOH
283
5
HOH
HOH
686
A
HOH
284
5
HOH
HOH
687
A
HOH
285
5
HOH
HOH
688
A
HOH
286
5
HOH
HOH
689
A
HOH
287
5
HOH
HOH
690
A
HOH
288
5
HOH
HOH
691
A
HOH
289
5
HOH
HOH
692
A
HOH
290
5
HOH
HOH
693
A
HOH
291
5
HOH
HOH
694
A
HOH
292
5
HOH
HOH
695
A
HOH
293
5
HOH
HOH
696
A
HOH
294
5
HOH
HOH
697
A
HOH
295
5
HOH
HOH
698
A
HOH
296
5
HOH
HOH
699
A
HOH
297
5
HOH
HOH
700
A
HOH
298
5
HOH
HOH
701
A
HOH
299
5
HOH
HOH
702
A
HOH
300
5
HOH
HOH
703
A
HOH
301
5
HOH
HOH
704
A
HOH
302
5
HOH
HOH
705
A
HOH
303
5
HOH
HOH
706
A
HOH
304
5
HOH
HOH
707
A
HOH
305
5
HOH
HOH
708
A
HOH
306
5
HOH
HOH
709
A
HOH
307
5
HOH
HOH
710
A
HOH
308
5
HOH
HOH
711
A
HOH
309
5
HOH
HOH
712
A
HOH
310
5
HOH
HOH
713
A
HOH
311
5
HOH
HOH
714
A
HOH
312
5
HOH
HOH
715
A
HOH
313
5
HOH
HOH
716
A
HOH
314
5
HOH
HOH
717
A
HOH
315
5
HOH
HOH
718
A
HOH
316
5
HOH
HOH
719
A
HOH
317
5
HOH
HOH
720
A
HOH
318
5
HOH
HOH
721
A
HOH
319
5
HOH
HOH
722
A
HOH
320
5
HOH
HOH
723
A
HOH
321
5
HOH
HOH
724
A
HOH
322
5
HOH
HOH
725
A
HOH
323
5
HOH
HOH
726
A
HOH
324
5
HOH
HOH
727
A
HOH
325
5
HOH
HOH
728
A
HOH
326
5
HOH
HOH
729
A
HOH
327
5
HOH
HOH
730
A
HOH
328
5
HOH
HOH
731
A
HOH
329
5
HOH
HOH
732
A
HOH
330
5
HOH
HOH
733
A
HOH
331
5
HOH
HOH
734
A
HOH
332
5
HOH
HOH
735
A
HOH
333
5
HOH
HOH
736
A
HOH
334
5
HOH
HOH
737
A
HOH
335
5
HOH
HOH
738
A
HOH
336
5
HOH
HOH
739
A
HOH
337
5
HOH
HOH
740
A
HOH
338
5
HOH
HOH
741
A
HOH
339
5
HOH
HOH
742
A
HOH
340
5
HOH
HOH
743
A
HOH
341
5
HOH
HOH
744
A
HOH
342
5
HOH
HOH
745
A
HOH
343
5
HOH
HOH
746
A
HOH
344
5
HOH
HOH
747
A
HOH
345
5
HOH
HOH
748
A
HOH
346
5
HOH
HOH
749
A
HOH
347
5
HOH
HOH
750
A
HOH
348
5
HOH
HOH
751
A
HOH
349
5
HOH
HOH
752
A
HOH
350
5
HOH
HOH
753
A
HOH
351
5
HOH
HOH
754
A
HOH
352
5
HOH
HOH
755
A
HOH
353
5
HOH
HOH
756
A
HOH
354
5
HOH
HOH
757
A
HOH
355
5
HOH
HOH
758
A
HOH
356
5
HOH
HOH
759
A
HOH
357
5
HOH
HOH
760
A
HOH
358
5
HOH
HOH
761
A
HOH
359
5
HOH
HOH
762
A
HOH
360
5
HOH
HOH
763
A
HOH
361
5
HOH
HOH
764
A
HOH
362
5
HOH
HOH
765
A
HOH
363
5
HOH
HOH
766
A
HOH
364
5
HOH
HOH
767
A
HOH
365
5
HOH
HOH
768
A
HOH
366
5
HOH
HOH
769
A
HOH
367
5
HOH
HOH
770
A
HOH
368
5
HOH
HOH
771
A
HOH
369
5
HOH
HOH
772
A
HOH
370
5
HOH
HOH
773
A
HOH
371
5
HOH
HOH
774
A
HOH
372
5
HOH
HOH
775
A
HOH
373
5
HOH
HOH
776
A
HOH
374
5
HOH
HOH
777
A
HOH
375
5
HOH
HOH
778
A
HOH
376
5
HOH
HOH
779
A
HOH
377
5
HOH
HOH
780
A
HOH
378
5
HOH
HOH
781
A
HOH
379
5
HOH
HOH
782
A
HOH
380
5
HOH
HOH
783
A
HOH
381
5
HOH
HOH
784
A
HOH
382
5
HOH
HOH
785
A
HOH
383
5
HOH
HOH
786
A
HOH
384
5
HOH
HOH
787
A
HOH
385
5
HOH
HOH
788
A
HOH
386
5
HOH
HOH
789
A
HOH
387
5
HOH
HOH
790
A
HOH
388
5
HOH
HOH
791
A
HOH
389
5
HOH
HOH
792
A
HOH
390
5
HOH
HOH
793
A
HOH
391
5
HOH
HOH
794
A
HOH
392
5
HOH
HOH
795
A
n
1
-2
A
n
2
-1
A
n
3
0
A
MSE
1
n
4
MSE
1
A
THR
2
n
5
THR
2
A
PHE
3
n
6
PHE
3
A
ASN
4
n
7
ASN
4
A
GLN
5
n
8
GLN
5
A
GLU
6
n
9
GLU
6
A
GLN
7
n
10
GLN
7
A
ASP
8
n
11
ASP
8
A
TYR
9
n
12
TYR
9
A
TRP
10
n
13
TRP
10
A
ALA
11
n
14
ALA
11
A
GLY
12
n
15
GLY
12
A
TYR
13
n
16
TYR
13
A
LYS
14
n
17
LYS
14
A
ALA
15
n
18
ALA
15
A
ASN
16
n
19
ASN
16
A
GLU
17
n
20
GLU
17
A
ARG
18
n
21
ARG
18
A
ALA
19
n
22
ALA
19
A
LEU
20
n
23
LEU
20
A
ILE
21
n
24
ILE
21
A
ILE
22
n
25
ILE
22
A
GLN
23
n
26
GLN
23
A
THR
24
n
27
THR
24
A
TRP
25
n
28
TRP
25
A
SER
26
n
29
SER
26
A
GLY
27
n
30
GLY
27
A
PHE
28
n
31
PHE
28
A
GLY
29
n
32
GLY
29
A
ARG
30
n
33
ARG
30
A
TYR
31
n
34
TYR
31
A
ALA
32
n
35
ALA
32
A
PRO
33
n
36
PRO
33
A
ASP
34
n
37
ASP
34
A
HIS
35
n
38
HIS
35
A
LEU
36
n
39
LEU
36
A
TYR
37
n
40
TYR
37
A
PRO
38
n
41
PRO
38
A
PRO
39
n
42
PRO
39
A
HIS
40
n
43
HIS
40
A
ILE
41
n
44
ILE
41
A
LEU
42
n
45
LEU
42
A
PRO
43
n
46
PRO
43
A
LEU
44
n
47
LEU
44
A
ASP
45
n
48
ASP
45
A
THR
46
n
49
THR
46
A
ASP
47
n
50
ASP
47
A
ASN
48
n
51
ASN
48
A
GLU
49
n
52
GLU
49
A
THR
50
n
53
THR
50
A
LEU
51
n
54
LEU
51
A
GLY
52
n
55
GLY
52
A
THR
53
n
56
THR
53
A
THR
54
n
57
THR
54
A
VAL
55
n
58
VAL
55
A
LEU
56
n
59
LEU
56
A
GLN
57
n
60
GLN
57
A
ALA
58
n
61
ALA
58
A
LEU
59
n
62
LEU
59
A
ALA
60
n
63
ALA
60
A
ASN
61
n
64
ASN
61
A
SER
62
n
65
SER
62
A
ARG
63
n
66
ARG
63
A
THR
64
n
67
THR
64
A
PHE
65
n
68
PHE
65
A
VAL
66
n
69
VAL
66
A
TYR
67
n
70
TYR
67
A
ASP
68
n
71
ASP
68
A
SER
69
n
72
SER
69
A
PRO
70
n
73
PRO
70
A
GLU
71
n
74
GLU
71
A
ASP
72
n
75
ASP
72
A
GLN
73
n
76
GLN
73
A
ASP
74
n
77
ASP
74
A
PHE
75
n
78
PHE
75
A
PHE
76
n
79
PHE
76
A
ASP
77
n
80
ASP
77
A
THR
78
n
81
THR
78
A
GLU
79
n
82
GLU
79
A
LYS
80
n
83
LYS
80
A
ILE
81
n
84
ILE
81
A
ARG
82
n
85
ARG
82
A
GLN
83
n
86
GLN
83
A
ARG
84
n
87
ARG
84
A
TYR
85
n
88
TYR
85
A
GLU
86
n
89
GLU
86
A
ASP
87
n
90
ASP
87
A
TRP
88
n
91
TRP
88
A
VAL
89
n
92
VAL
89
A
ALA
90
n
93
ALA
90
A
LYS
91
n
94
LYS
91
A
LEU
92
n
95
LEU
92
A
CYS
93
n
96
CYS
93
A
GLY
94
n
97
GLY
94
A
ASN
95
n
98
ASN
95
A
LEU
96
n
99
LEU
96
A
GLY
97
n
100
GLY
97
A
TYR
98
n
101
TYR
98
A
LYS
99
n
102
LYS
99
A
THR
100
n
103
THR
100
A
ARG
101
n
104
ARG
101
A
ARG
102
n
105
ARG
102
A
ALA
103
n
106
ALA
103
A
LEU
104
n
107
LEU
104
A
PHE
105
n
108
PHE
105
A
LYS
106
n
109
LYS
106
A
ASN
107
n
110
ASN
107
A
MSE
108
n
111
MSE
108
A
MSE
109
n
112
MSE
109
A
SER
110
n
113
SER
110
A
VAL
111
n
114
VAL
111
A
ASP
112
n
115
ASP
112
A
ILE
113
n
116
ILE
113
A
TRP
114
n
117
TRP
114
A
LEU
115
n
118
LEU
115
A
HIS
116
n
119
HIS
116
A
ASN
117
n
120
ASN
117
A
GLY
118
n
121
GLY
118
A
CYS
119
n
122
CYS
119
A
LEU
120
n
123
LEU
120
A
LYS
121
n
124
LYS
121
A
ILE
122
n
125
ILE
122
A
SER
123
n
126
SER
123
A
PRO
124
n
127
PRO
124
A
SER
125
n
128
SER
125
A
ARG
126
n
129
ARG
126
A
HIS
127
n
130
HIS
127
A
VAL
128
n
131
VAL
128
A
LYS
129
n
132
LYS
129
A
LEU
130
n
133
LEU
130
A
GLU
131
n
134
GLU
131
A
ALA
132
n
135
ALA
132
A
TRP
133
n
136
TRP
133
A
ASP
134
n
137
ASP
134
A
ALA
135
n
138
ALA
135
A
ILE
136
n
139
ILE
136
A
ASP
137
n
140
ASP
137
A
ALA
138
n
141
ALA
138
A
ASP
139
n
142
ASP
139
A
ASP
140
n
143
ASP
140
A
VAL
141
n
144
VAL
141
A
ILE
142
n
145
ILE
142
A
LEU
143
n
146
LEU
143
A
SER
144
n
147
SER
144
A
LEU
145
n
148
LEU
145
A
ASP
146
n
149
ASP
146
A
ASN
147
n
150
ASN
147
A
SER
148
n
151
SER
148
A
PRO
149
n
152
PRO
149
A
GLU
150
n
153
GLU
150
A
GLU
151
n
154
GLU
151
A
ILE
152
n
155
ILE
152
A
GLY
153
n
156
GLY
153
A
ALA
154
n
157
ALA
154
A
GLY
155
n
158
GLY
155
A
LEU
156
n
159
LEU
156
A
LYS
157
n
160
LYS
157
A
LEU
158
n
161
LEU
158
A
ALA
159
n
162
ALA
159
A
LEU
160
n
163
LEU
160
A
SER
161
n
164
SER
161
A
ARG
162
n
165
ARG
162
A
CYS
163
n
166
CYS
163
A
ARG
164
n
167
ARG
164
A
author_defined_assembly
1
monomeric
A
MSE
1
SELENOMETHIONINE
A
MSE
4
MET
A
MSE
108
SELENOMETHIONINE
A
MSE
111
MET
A
MSE
109
SELENOMETHIONINE
A
MSE
112
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
32
A
O
ALA
35
A
N
SER
26
A
N
SER
29
A
N
ILE
22
A
N
ILE
25
A
O
HIS
40
A
O
HIS
43
A
O
ALA
32
A
O
ALA
35
A
N
SER
26
A
N
SER
29
A
O
GLN
23
A
O
GLN
26
A
N
GLY
12
A
N
GLY
15
A
N
TYR
9
A
N
TYR
12
A
O
LEU
115
A
O
LEU
118
A
N
TRP
114
A
N
TRP
117
A
O
LYS
121
A
O
LYS
124
A
N
ILE
122
A
N
ILE
125
A
O
VAL
141
A
O
VAL
144
A
N
ARG
126
A
N
ARG
129
A
O
ASP
134
A
O
ASP
137
1
A
HOH
653
E
HOH
1
A
HOH
773
E
HOH
1
A
SER
-2
A
SER
1
1
Y
1
A
ASN
-1
A
ASN
2
1
Y
1
A
ALA
0
A
ALA
3
1
Y
1
A
A
CE
O
MSE
HOH
109
483
1.95
B
1
A
A
OH
O
TYR
HOH
13
763
1.98
A
1
A
A
O
O
HOH
HOH
507
750
2.04
1
A
A
O
O
HOH
HOH
564
795
2.15
1
A
A
O
O
HOH
HOH
526
791
2.16
1
A
A
O
O
HOH
HOH
483
788
2.17
1
A
A
O
O
HOH
HOH
579
776
2.18
1_555
3_557
1
A
A
O
O
HOH
HOH
490
789
2.19
1_555
2_555
1
A
GLU
6
74.53
-10.49
1
A
LEU
143
-128.79
-166.30
19.782
-1.29
0.00
0.00
2.12
0.00
-0.83
0.972
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS, R-FACTOR-ALL CORRESPONDS TO DEPOSITED FILE. R-WORK AND R-FREE FACTORS ARE TAKEN FROM SECOND TO LAST ROUND OF REFINEMENT WHICH USED TEST DATA SET.
0.2065
0.1541
0.1536
0.1536
1.35
30.40
2108
36032
36032
92.87
1.602
0.029
RANDOM
1
0
0
SAD
0.065
0.80
0.80
1.20
MAXIMUM LIKELIHOOD
MASK
1.35
30.40
392
1730
9
0
1329
0.014
0.022
1506
1.509
1.956
2067
5.575
5.000
198
35.703
24.000
80
13.918
15.000
267
17.299
15.000
12
0.106
0.200
219
0.008
0.020
1190
0.229
0.200
761
0.318
0.200
1014
0.226
0.200
323
0.204
0.200
39
0.221
0.200
53
1.469
1.500
879
2.137
2.000
1440
3.174
3.000
659
4.080
4.500
609
2.078
3.000
1538
6.429
3.000
393
5.086
3.000
1454
0.28
0.224
1.382
92
1364
1364
20
48.49
20.1
1.35
30.4
2GKP
36110
36110
0
0
0.075
1
36.0
12.3
92.6
0.51
1.35
1.37
2.07
800
1
5.6
41.7
refinement
REFMAC
5.2.0019
data collection
SBC-Collect
data scaling
SCALEPACK
phasing
HKL-3000
phasing
SHELXD
phasing
MLPHARE
phasing
DM
phasing
SOLVE
phasing
RESOLVE
hypothetical protein NMB0488
Protein of Unknown Function NMB0488 from Neisseria meningitidis
1
N
N
2
N
N
3
N
N
4
N
N
5
N
N
A
ASP
47
A
ASP
50
HELX_P
A
ASN
61
A
ASN
64
1
1
15
A
SER
69
A
SER
72
HELX_P
A
ASP
77
A
ASP
80
1
2
9
A
ASP
77
A
ASP
80
HELX_P
A
GLY
97
A
GLY
100
1
3
21
A
THR
100
A
THR
103
HELX_P
A
LYS
106
A
LYS
109
1
4
7
A
SER
148
A
SER
151
HELX_P
A
ARG
162
A
ARG
165
1
5
15
covale
1.328
both
A
MSE
1
A
C
MSE
4
1_555
A
THR
2
A
N
THR
5
1_555
covale
2.009
none
A
A
CYS
93
A
SG
CYS
96
1_555
A
BME
401
D
S2
BME
1_555
covale
1.340
both
A
ASN
107
A
C
ASN
110
1_555
A
MSE
108
A
N
MSE
111
1_555
covale
1.332
both
A
MSE
108
A
C
MSE
111
1_555
A
MSE
109
A
N
MSE
112
1_555
covale
1.335
both
A
MSE
109
A
C
MSE
112
1_555
A
SER
110
A
N
SER
113
1_555
STRUCTURAL GENOMICS, UNKNOWN FUNCTION
structural genomics, APC83854, hypothetical protein, PSI, Protein Structure Initiative, Midwest Center for Structural Genomics, MCSG, UNKNOWN FUNCTION
Q9K0T5_NEIMB
UNP
1
1
Q9K0T5
1
164
2GKP
1
164
Q9K0T5
A
1
4
167
1
cloning artifact
SER
-2
2GKP
A
Q9K0T5
UNP
1
1
cloning artifact
ASN
-1
2GKP
A
Q9K0T5
UNP
2
1
cloning artifact
ALA
0
2GKP
A
Q9K0T5
UNP
3
1
MET
modified residue
MSE
1
2GKP
A
Q9K0T5
UNP
1
4
1
MET
modified residue
MSE
108
2GKP
A
Q9K0T5
UNP
108
111
1
MET
modified residue
MSE
109
2GKP
A
Q9K0T5
UNP
109
112
3
6
2
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
anti-parallel
A
TYR
31
A
TYR
34
A
PRO
33
A
PRO
36
A
LEU
20
A
LEU
23
A
GLY
27
A
GLY
30
A
HIS
40
A
HIS
43
A
LEU
42
A
LEU
45
A
TYR
31
A
TYR
34
A
PRO
33
A
PRO
36
A
LEU
20
A
LEU
23
A
GLY
27
A
GLY
30
A
ASP
8
A
ASP
11
A
ALA
15
A
ALA
18
A
MSE
109
A
MSE
112
A
HIS
116
A
HIS
119
A
CYS
119
A
CYS
122
A
SER
123
A
SER
126
A
VAL
141
A
VAL
144
A
SER
144
A
SER
147
A
SER
125
A
SER
128
A
LYS
129
A
LYS
132
A
ALA
132
A
ALA
135
A
ALA
135
A
ALA
138
BINDING SITE FOR RESIDUE NA A 403
A
NA
403
Software
3
BINDING SITE FOR RESIDUE EDO A 402
A
EDO
402
Software
6
BINDING SITE FOR RESIDUE BME A 401
A
BME
401
Software
8
A
LYS
14
A
LYS
17
3
1_555
A
GLN
23
A
GLN
26
3
1_555
A
TRP
25
A
TRP
28
3
1_555
A
SER
110
A
SER
113
6
1_555
A
ASP
112
A
ASP
115
6
1_555
A
SER
123
A
SER
126
6
1_555
A
PRO
124
A
PRO
127
6
1_555
A
SER
125
A
SER
128
6
1_555
A
HOH
641
E
HOH
6
1_555
A
VAL
89
A
VAL
92
8
1_555
A
CYS
93
A
CYS
96
8
1_555
A
LYS
99
A
LYS
102
8
1_555
A
THR
100
A
THR
103
8
1_555
A
ARG
101
A
ARG
104
8
1_555
A
HOH
432
E
HOH
8
1_555
A
HOH
674
E
HOH
8
1_555
A
HOH
723
E
HOH
8
1_556
18
P 21 21 2