0.00738 0.00000 0.00000 0.00000 0.00738 0.00000 0.00000 0.00000 0.02812 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.000 90.000 90.000 135.560 135.560 35.560 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C4 H10 O2 90.121 2-ETHOXYETHANOL non-polymer C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking Na 1 22.990 SODIUM ION non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking UNKNOWN LIGAND non-polymer C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of DNA polymerase III, gamma subunit-related protein (tm0771) from Thermotoga maritima at 2.00 A resolution 10.2210/pdb2gno/pdb pdb_00002gno 100 1 Flat mirror (vertical focusing) CCD 2005-12-18 ADSC QUANTUM 315 Single crystal Si(111) bent monochromator (horizontal focusing) MAD M x-ray 1 0.979224 1.0 0.918370 1.0 0.978940 1.0 BL11-1 SSRL 0.979224, 0.918370, 0.978940 SYNCHROTRON SSRL BEAMLINE BL11-1 35485.527 DNA polymerase III, gamma subunit-related protein residues 9-312 1 man polymer 22.990 SODIUM ION 1 syn non-polymer UNKNOWN LIGAND 1 syn non-polymer 90.121 2-ETHOXYETHANOL 2 syn non-polymer 18.015 water 107 nat water no yes GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL YTRKYVIVHDCER(MSE)TQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLW EELPLLERDFKTALEAYKLGAEKLSGL(MSE)ESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQV TNTITGKDAFLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLTL(MSE)NILAIHRERKRGVNAWS GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPEL YTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELP LLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQVTNTITGKD AFLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLTLMNILAIHRERKRGVNAWS A 360384 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Thermotoga Thermotoga maritima MSB8 Escherichia sample tm0771 243274 Thermotoga maritima 562 Escherichia coli Plasmid 1 2.31 46.22 VAPOR DIFFUSION, SITTING DROP, NANODROP 6.2 35.0% 2-ethoxyethanol, 0.2M NaCl, 0.1M Na,K-Phosphate, pH 6.2, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative database_2 struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Advisory Source and taxonomy Version format compliance Database references Derived calculations 1 0 2006-04-18 1 1 2008-05-01 1 2 2011-07-13 1 3 2023-01-25 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_conn.pdbx_leaving_atom_flag _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SEQUENCE: THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY RESIDUES 9-312 OF THE TM0771 SEQUENCE. A SMALL AMOUNT OF PROTEIN WITH THE TAG UNCLEAVED REMAINED IN THE SAMPLE AFTER PURIFICATION. A SERIES OF DIFFERENT LENGTH N-TERMINAL TRUNCATIONS WERE TRIED TO IMPROVE DIFFRACTION QUALITY FROM THIS TARGET. THE CONSTRUCT WITH RESIDUES 1-8 ELIMINATED PRODUCED THE BEST DIFFRACTING CRYSTAL. Y RCSB Y RCSB 2006-04-10 REL REL NA SODIUM ION UNL UNKNOWN LIGAND ETX 2-ETHOXYETHANOL HOH water NA 2 2 NA NA 2 A UNL 1 3 UNL UNL 1 A ETX 3 4 ETX ETX 3 A ETX 4 4 ETX ETX 4 A HOH 5 5 HOH HOH 313 A HOH 6 5 HOH HOH 314 A HOH 7 5 HOH HOH 315 A HOH 8 5 HOH HOH 316 A HOH 9 5 HOH HOH 317 A HOH 10 5 HOH HOH 318 A HOH 11 5 HOH HOH 319 A HOH 12 5 HOH HOH 320 A HOH 13 5 HOH HOH 321 A HOH 14 5 HOH HOH 322 A HOH 15 5 HOH HOH 323 A HOH 16 5 HOH HOH 324 A HOH 17 5 HOH HOH 325 A HOH 18 5 HOH HOH 326 A HOH 19 5 HOH HOH 327 A HOH 20 5 HOH HOH 328 A HOH 21 5 HOH HOH 329 A HOH 22 5 HOH HOH 330 A HOH 23 5 HOH HOH 331 A HOH 24 5 HOH HOH 332 A HOH 25 5 HOH HOH 333 A HOH 26 5 HOH HOH 334 A HOH 27 5 HOH HOH 335 A HOH 28 5 HOH HOH 336 A HOH 29 5 HOH HOH 337 A HOH 30 5 HOH HOH 338 A HOH 31 5 HOH HOH 339 A HOH 33 5 HOH HOH 340 A HOH 34 5 HOH HOH 341 A HOH 35 5 HOH HOH 342 A HOH 36 5 HOH HOH 343 A HOH 37 5 HOH HOH 344 A HOH 38 5 HOH HOH 345 A HOH 39 5 HOH HOH 346 A HOH 40 5 HOH HOH 347 A HOH 42 5 HOH HOH 348 A HOH 44 5 HOH HOH 349 A HOH 45 5 HOH HOH 350 A HOH 46 5 HOH HOH 351 A HOH 47 5 HOH HOH 352 A HOH 48 5 HOH HOH 353 A HOH 49 5 HOH HOH 354 A HOH 50 5 HOH HOH 355 A HOH 51 5 HOH HOH 356 A HOH 52 5 HOH HOH 357 A HOH 53 5 HOH HOH 358 A HOH 54 5 HOH HOH 359 A HOH 55 5 HOH HOH 360 A HOH 56 5 HOH HOH 361 A HOH 57 5 HOH HOH 362 A HOH 58 5 HOH HOH 363 A HOH 59 5 HOH HOH 364 A HOH 60 5 HOH HOH 365 A HOH 61 5 HOH HOH 366 A HOH 62 5 HOH HOH 367 A HOH 63 5 HOH HOH 368 A HOH 64 5 HOH HOH 369 A HOH 65 5 HOH HOH 370 A HOH 66 5 HOH HOH 371 A HOH 67 5 HOH HOH 372 A HOH 68 5 HOH HOH 373 A HOH 69 5 HOH HOH 374 A HOH 70 5 HOH HOH 375 A HOH 71 5 HOH HOH 376 A HOH 72 5 HOH HOH 377 A HOH 73 5 HOH HOH 378 A HOH 74 5 HOH HOH 379 A HOH 75 5 HOH HOH 380 A HOH 76 5 HOH HOH 381 A HOH 78 5 HOH HOH 382 A HOH 79 5 HOH HOH 383 A HOH 80 5 HOH HOH 384 A HOH 81 5 HOH HOH 385 A HOH 82 5 HOH HOH 386 A HOH 83 5 HOH HOH 387 A HOH 84 5 HOH HOH 388 A HOH 85 5 HOH HOH 389 A HOH 86 5 HOH HOH 390 A HOH 87 5 HOH HOH 391 A HOH 88 5 HOH HOH 392 A HOH 89 5 HOH HOH 393 A HOH 90 5 HOH HOH 394 A HOH 91 5 HOH HOH 395 A HOH 92 5 HOH HOH 396 A HOH 93 5 HOH HOH 397 A HOH 94 5 HOH HOH 398 A HOH 95 5 HOH HOH 399 A HOH 96 5 HOH HOH 400 A HOH 97 5 HOH HOH 401 A HOH 98 5 HOH HOH 402 A HOH 99 5 HOH HOH 403 A HOH 100 5 HOH HOH 404 A HOH 101 5 HOH HOH 405 A HOH 102 5 HOH HOH 406 A HOH 103 5 HOH HOH 407 A HOH 104 5 HOH HOH 408 A HOH 105 5 HOH HOH 409 A HOH 106 5 HOH HOH 410 A HOH 107 5 HOH HOH 411 A HOH 108 5 HOH HOH 412 A HOH 109 5 HOH HOH 413 A HOH 110 5 HOH HOH 414 A HOH 112 5 HOH HOH 415 A HOH 113 5 HOH HOH 416 A HOH 114 5 HOH HOH 417 A HOH 116 5 HOH HOH 418 A HOH 117 5 HOH HOH 419 A n 1 8 A n 2 9 A n 3 10 A ASP 11 n 4 ASP 11 A GLN 12 n 5 GLN 12 A LEU 13 n 6 LEU 13 A GLU 14 n 7 GLU 14 A THR 15 n 8 THR 15 A LEU 16 n 9 LEU 16 A LYS 17 n 10 LYS 17 A ARG 18 n 11 ARG 18 A ILE 19 n 12 ILE 19 A ILE 20 n 13 ILE 20 A GLU 21 n 14 GLU 21 A LYS 22 n 15 LYS 22 A SER 23 n 16 SER 23 A GLU 24 n 17 GLU 24 A GLY 25 n 18 GLY 25 A ILE 26 n 19 ILE 26 A SER 27 n 20 SER 27 A ILE 28 n 21 ILE 28 A LEU 29 n 22 LEU 29 A ILE 30 n 23 ILE 30 A ASN 31 n 24 ASN 31 A GLY 32 n 25 GLY 32 A GLU 33 n 26 GLU 33 A ASP 34 n 27 ASP 34 A LEU 35 n 28 LEU 35 A SER 36 n 29 SER 36 A TYR 37 n 30 TYR 37 A PRO 38 n 31 PRO 38 A ARG 39 n 32 ARG 39 A GLU 40 n 33 GLU 40 A VAL 41 n 34 VAL 41 A SER 42 n 35 SER 42 A LEU 43 n 36 LEU 43 A GLU 44 n 37 GLU 44 A LEU 45 n 38 LEU 45 A PRO 46 n 39 PRO 46 A GLU 47 n 40 GLU 47 A TYR 48 n 41 TYR 48 A VAL 49 n 42 VAL 49 A GLU 50 n 43 GLU 50 A LYS 51 n 44 LYS 51 A PHE 52 n 45 PHE 52 A PRO 53 n 46 PRO 53 A PRO 54 n 47 PRO 54 A LYS 55 n 48 LYS 55 A ALA 56 n 49 ALA 56 A SER 57 n 50 SER 57 A ASP 58 n 51 ASP 58 A VAL 59 n 52 VAL 59 A LEU 60 n 53 LEU 60 A GLU 61 n 54 GLU 61 A ILE 62 n 55 ILE 62 A ASP 63 n 56 ASP 63 A PRO 64 n 57 PRO 64 A GLU 65 n 58 GLU 65 A GLY 66 n 59 GLY 66 A GLU 67 n 60 GLU 67 A ASN 68 n 61 ASN 68 A ILE 69 n 62 ILE 69 A GLY 70 n 63 GLY 70 A ILE 71 n 64 ILE 71 A ASP 72 n 65 ASP 72 A ASP 73 n 66 ASP 73 A ILE 74 n 67 ILE 74 A ARG 75 n 68 ARG 75 A THR 76 n 69 THR 76 A ILE 77 n 70 ILE 77 A LYS 78 n 71 LYS 78 A ASP 79 n 72 ASP 79 A PHE 80 n 73 PHE 80 A LEU 81 n 74 LEU 81 A ASN 82 n 75 ASN 82 A TYR 83 n 76 TYR 83 A SER 84 n 77 SER 84 A PRO 85 n 78 PRO 85 A GLU 86 n 79 GLU 86 A LEU 87 n 80 LEU 87 A TYR 88 n 81 TYR 88 A THR 89 n 82 THR 89 A ARG 90 n 83 ARG 90 A LYS 91 n 84 LYS 91 A TYR 92 n 85 TYR 92 A VAL 93 n 86 VAL 93 A ILE 94 n 87 ILE 94 A VAL 95 n 88 VAL 95 A HIS 96 n 89 HIS 96 A ASP 97 n 90 ASP 97 A CYS 98 n 91 CYS 98 A GLU 99 n 92 GLU 99 A ARG 100 n 93 ARG 100 A MSE 101 n 94 MSE 101 A THR 102 n 95 THR 102 A GLN 103 n 96 GLN 103 A GLN 104 n 97 GLN 104 A ALA 105 n 98 ALA 105 A ALA 106 n 99 ALA 106 A ASN 107 n 100 ASN 107 A ALA 108 n 101 ALA 108 A PHE 109 n 102 PHE 109 A LEU 110 n 103 LEU 110 A LYS 111 n 104 LYS 111 A ALA 112 n 105 ALA 112 A LEU 113 n 106 LEU 113 A GLU 114 n 107 GLU 114 A GLU 115 n 108 GLU 115 A PRO 116 n 109 PRO 116 A PRO 117 n 110 PRO 117 A GLU 118 n 111 GLU 118 A TYR 119 n 112 TYR 119 A ALA 120 n 113 ALA 120 A VAL 121 n 114 VAL 121 A ILE 122 n 115 ILE 122 A VAL 123 n 116 VAL 123 A LEU 124 n 117 LEU 124 A ASN 125 n 118 ASN 125 A THR 126 n 119 THR 126 A ARG 127 n 120 ARG 127 A ARG 128 n 121 ARG 128 A TRP 129 n 122 TRP 129 A HIS 130 n 123 HIS 130 A TYR 131 n 124 TYR 131 A LEU 132 n 125 LEU 132 A LEU 133 n 126 LEU 133 A PRO 134 n 127 PRO 134 A THR 135 n 128 THR 135 A ILE 136 n 129 ILE 136 A LYS 137 n 130 LYS 137 A SER 138 n 131 SER 138 A ARG 139 n 132 ARG 139 A VAL 140 n 133 VAL 140 A PHE 141 n 134 PHE 141 A ARG 142 n 135 ARG 142 A VAL 143 n 136 VAL 143 A VAL 144 n 137 VAL 144 A VAL 145 n 138 VAL 145 A ASN 146 n 139 ASN 146 A VAL 147 n 140 VAL 147 A PRO 148 n 141 PRO 148 A LYS 149 n 142 LYS 149 A GLU 150 n 143 GLU 150 A PHE 151 n 144 PHE 151 A ARG 152 n 145 ARG 152 A ASP 153 n 146 ASP 153 A LEU 154 n 147 LEU 154 A VAL 155 n 148 VAL 155 A LYS 156 n 149 LYS 156 A GLU 157 n 150 GLU 157 A LYS 158 n 151 LYS 158 A ILE 159 n 152 ILE 159 A GLY 160 n 153 GLY 160 A ASP 161 n 154 ASP 161 A LEU 162 n 155 LEU 162 A TRP 163 n 156 TRP 163 A GLU 164 n 157 GLU 164 A GLU 165 n 158 GLU 165 A LEU 166 n 159 LEU 166 A PRO 167 n 160 PRO 167 A LEU 168 n 161 LEU 168 A LEU 169 n 162 LEU 169 A GLU 170 n 163 GLU 170 A ARG 171 n 164 ARG 171 A ASP 172 n 165 ASP 172 A PHE 173 n 166 PHE 173 A LYS 174 n 167 LYS 174 A THR 175 n 168 THR 175 A ALA 176 n 169 ALA 176 A LEU 177 n 170 LEU 177 A GLU 178 n 171 GLU 178 A ALA 179 n 172 ALA 179 A TYR 180 n 173 TYR 180 A LYS 181 n 174 LYS 181 A LEU 182 n 175 LEU 182 A GLY 183 n 176 GLY 183 A ALA 184 n 177 ALA 184 A GLU 185 n 178 GLU 185 A LYS 186 n 179 LYS 186 A LEU 187 n 180 LEU 187 A SER 188 n 181 SER 188 A GLY 189 n 182 GLY 189 A LEU 190 n 183 LEU 190 A MSE 191 n 184 MSE 191 A GLU 192 n 185 GLU 192 A SER 193 n 186 SER 193 A LEU 194 n 187 LEU 194 A LYS 195 n 188 LYS 195 A VAL 196 n 189 VAL 196 A LEU 197 n 190 LEU 197 A GLU 198 n 191 GLU 198 A THR 199 n 192 THR 199 A GLU 200 n 193 GLU 200 A LYS 201 n 194 LYS 201 A LEU 202 n 195 LEU 202 A LEU 203 n 196 LEU 203 A LYS 204 n 197 LYS 204 A LYS 205 n 198 LYS 205 A VAL 206 n 199 VAL 206 A LEU 207 n 200 LEU 207 A SER 208 n 201 SER 208 A LYS 209 n 202 LYS 209 A GLY 210 n 203 GLY 210 A LEU 211 n 204 LEU 211 A GLU 212 n 205 GLU 212 A GLY 213 n 206 GLY 213 A TYR 214 n 207 TYR 214 A LEU 215 n 208 LEU 215 A ALA 216 n 209 ALA 216 A CYS 217 n 210 CYS 217 A ARG 218 n 211 ARG 218 A GLU 219 n 212 GLU 219 A LEU 220 n 213 LEU 220 A LEU 221 n 214 LEU 221 A GLU 222 n 215 GLU 222 A ARG 223 n 216 ARG 223 A PHE 224 n 217 PHE 224 A SER 225 n 218 SER 225 A LYS 226 n 219 LYS 226 A VAL 227 n 220 VAL 227 A GLU 228 n 221 GLU 228 A SER 229 n 222 SER 229 A LYS 230 n 223 LYS 230 A GLU 231 n 224 GLU 231 A PHE 232 n 225 PHE 232 A PHE 233 n 226 PHE 233 A ALA 234 n 227 ALA 234 A LEU 235 n 228 LEU 235 A PHE 236 n 229 PHE 236 A ASP 237 n 230 ASP 237 A GLN 238 n 231 GLN 238 A VAL 239 n 232 VAL 239 A THR 240 n 233 THR 240 A ASN 241 n 234 ASN 241 A THR 242 n 235 THR 242 A ILE 243 n 236 ILE 243 A THR 244 n 237 THR 244 A GLY 245 n 238 GLY 245 A LYS 246 n 239 LYS 246 A ASP 247 n 240 ASP 247 A ALA 248 n 241 ALA 248 A PHE 249 n 242 PHE 249 A LEU 250 n 243 LEU 250 A LEU 251 n 244 LEU 251 A ILE 252 n 245 ILE 252 A GLN 253 n 246 GLN 253 A ARG 254 n 247 ARG 254 A LEU 255 n 248 LEU 255 A THR 256 n 249 THR 256 A ARG 257 n 250 ARG 257 A ILE 258 n 251 ILE 258 A ILE 259 n 252 ILE 259 A LEU 260 n 253 LEU 260 A HIS 261 n 254 HIS 261 A GLU 262 n 255 GLU 262 A ASN 263 n 256 ASN 263 A THR 264 n 257 THR 264 A TRP 265 n 258 TRP 265 A GLU 266 n 259 GLU 266 A SER 267 n 260 SER 267 A VAL 268 n 261 VAL 268 A GLU 269 n 262 GLU 269 A ASP 270 n 263 ASP 270 A GLN 271 n 264 GLN 271 A LYS 272 n 265 LYS 272 A SER 273 n 266 SER 273 A VAL 274 n 267 VAL 274 A SER 275 n 268 SER 275 A PHE 276 n 269 PHE 276 A LEU 277 n 270 LEU 277 A ASP 278 n 271 ASP 278 A SER 279 n 272 SER 279 A ILE 280 n 273 ILE 280 A LEU 281 n 274 LEU 281 A ARG 282 n 275 ARG 282 A VAL 283 n 276 VAL 283 A LYS 284 n 277 LYS 284 A ILE 285 n 278 ILE 285 A ALA 286 n 279 ALA 286 A ASN 287 n 280 ASN 287 A LEU 288 n 281 LEU 288 A ASN 289 n 282 ASN 289 A ASN 290 n 283 ASN 290 A LYS 291 n 284 LYS 291 A LEU 292 n 285 LEU 292 A THR 293 n 286 THR 293 A LEU 294 n 287 LEU 294 A MSE 295 n 288 MSE 295 A ASN 296 n 289 ASN 296 A ILE 297 n 290 ILE 297 A LEU 298 n 291 LEU 298 A ALA 299 n 292 ALA 299 A ILE 300 n 293 ILE 300 A HIS 301 n 294 HIS 301 A ARG 302 n 295 ARG 302 A GLU 303 n 296 GLU 303 A ARG 304 n 297 ARG 304 A LYS 305 n 298 LYS 305 A ARG 306 n 299 ARG 306 A n 300 307 A n 301 308 A n 302 309 A n 303 310 A n 304 311 A n 305 312 A 2.2739 3.3447 -0.0458 6.0604 -2.5080 6.0805 -0.4766 0.8218 0.1320 -0.8650 0.6166 -0.1455 0.0443 -1.0041 -0.1401 -0.0210 -0.0383 -0.0224 0.1935 0.0757 -0.0947 refined 19.2960 78.5452 27.1236 X-RAY DIFFRACTION 2.9919 1.5443 -2.4187 4.5978 -2.2967 4.9265 -0.0930 -0.0827 0.0972 0.1565 0.0308 0.1339 0.2259 -0.3391 0.0622 0.0123 -0.0268 0.0039 0.0088 -0.0152 -0.0353 refined 22.3750 72.9649 39.6628 X-RAY DIFFRACTION 3.7286 -1.5147 0.0920 1.6663 0.2696 0.7421 0.2961 0.1797 0.1402 -0.4440 -0.2409 -0.1179 0.3113 -0.1436 -0.0552 0.2185 -0.0196 0.1473 -0.0902 -0.0095 -0.0867 refined 36.5658 63.0713 26.8708 X-RAY DIFFRACTION 2.4266 0.6897 -0.4104 3.9158 0.1590 1.8175 0.1276 -0.0452 0.0343 0.0263 0.0868 0.1446 -0.0776 -0.0887 -0.2144 0.0163 0.0281 0.0464 -0.0564 -0.0088 -0.0097 refined 44.1169 44.9327 36.3526 X-RAY DIFFRACTION A 11 A 4 A 29 A 22 X-RAY DIFFRACTION 1 ALL A 30 A 23 A 125 A 118 X-RAY DIFFRACTION 2 ALL A 126 A 119 A 197 A 190 X-RAY DIFFRACTION 3 ALL A 198 A 191 A 306 A 299 X-RAY DIFFRACTION 4 ALL author_defined_assembly 1 monomeric A MSE 101 SELENOMETHIONINE A MSE 94 MET A MSE 191 SELENOMETHIONINE A MSE 184 MET A MSE 295 SELENOMETHIONINE A MSE 288 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N LEU 60 A N LEU 53 A O ILE 94 A O ILE 87 A N VAL 93 A N VAL 86 A O VAL 123 A O VAL 116 A O LEU 124 A O LEU 117 A N ILE 28 A N ILE 21 A N ASN 31 A N ASN 24 A O VAL 143 A O VAL 136 1 A CD ARG 18 A CD ARG 11 1 Y 1 A NE ARG 18 A NE ARG 11 1 Y 1 A CZ ARG 18 A CZ ARG 11 1 Y 1 A NH1 ARG 18 A NH1 ARG 11 1 Y 1 A NH2 ARG 18 A NH2 ARG 11 1 Y 1 A CG GLU 33 A CG GLU 26 1 Y 1 A CD GLU 33 A CD GLU 26 1 Y 1 A OE1 GLU 33 A OE1 GLU 26 1 Y 1 A OE2 GLU 33 A OE2 GLU 26 1 Y 1 A CE LYS 55 A CE LYS 48 1 Y 1 A NZ LYS 55 A NZ LYS 48 1 Y 1 A CG GLU 67 A CG GLU 60 1 Y 1 A CD GLU 67 A CD GLU 60 1 Y 1 A OE1 GLU 67 A OE1 GLU 60 1 Y 1 A OE2 GLU 67 A OE2 GLU 60 1 Y 1 A OD1 ASP 79 A OD1 ASP 72 1 Y 1 A OD2 ASP 79 A OD2 ASP 72 1 Y 1 A CG LYS 111 A CG LYS 104 1 Y 1 A CD LYS 111 A CD LYS 104 1 Y 1 A CE LYS 111 A CE LYS 104 1 Y 1 A NZ LYS 111 A NZ LYS 104 1 Y 1 A CB GLU 115 A CB GLU 108 1 Y 1 A CG GLU 115 A CG GLU 108 1 Y 1 A CD GLU 115 A CD GLU 108 1 Y 1 A OE1 GLU 115 A OE1 GLU 108 1 Y 1 A OE2 GLU 115 A OE2 GLU 108 1 Y 1 A CD1 LEU 133 A CD1 LEU 126 1 Y 1 A CD2 LEU 133 A CD2 LEU 126 1 Y 1 A CE LYS 137 A CE LYS 130 1 Y 1 A NZ LYS 137 A NZ LYS 130 1 Y 1 A CG1 VAL 144 A CG1 VAL 137 1 Y 1 A CG2 VAL 144 A CG2 VAL 137 1 Y 1 A CG LYS 149 A CG LYS 142 1 Y 1 A CD LYS 149 A CD LYS 142 1 Y 1 A CE LYS 149 A CE LYS 142 1 Y 1 A NZ LYS 149 A NZ LYS 142 1 Y 1 A CG GLU 157 A CG GLU 150 1 Y 1 A CD GLU 157 A CD GLU 150 1 Y 1 A OE1 GLU 157 A OE1 GLU 150 1 Y 1 A OE2 GLU 157 A OE2 GLU 150 1 Y 1 A CE LYS 158 A CE LYS 151 1 Y 1 A NZ LYS 158 A NZ LYS 151 1 Y 1 A NZ LYS 181 A NZ LYS 174 1 Y 1 A CG GLU 185 A CG GLU 178 1 Y 1 A CD GLU 185 A CD GLU 178 1 Y 1 A OE1 GLU 185 A OE1 GLU 178 1 Y 1 A OE2 GLU 185 A OE2 GLU 178 1 Y 1 A CD GLU 198 A CD GLU 191 1 Y 1 A OE1 GLU 198 A OE1 GLU 191 1 Y 1 A OE2 GLU 198 A OE2 GLU 191 1 Y 1 A CD GLU 200 A CD GLU 193 1 Y 1 A OE1 GLU 200 A OE1 GLU 193 1 Y 1 A OE2 GLU 200 A OE2 GLU 193 1 Y 1 A CE LYS 201 A CE LYS 194 1 Y 1 A NZ LYS 201 A NZ LYS 194 1 Y 1 A CG LYS 209 A CG LYS 202 1 Y 1 A CD LYS 209 A CD LYS 202 1 Y 1 A CE LYS 209 A CE LYS 202 1 Y 1 A NZ LYS 209 A NZ LYS 202 1 Y 1 A CG LYS 246 A CG LYS 239 1 Y 1 A CD LYS 246 A CD LYS 239 1 Y 1 A CE LYS 246 A CE LYS 239 1 Y 1 A NZ LYS 246 A NZ LYS 239 1 Y 1 A NH1 ARG 257 A NH1 ARG 250 1 Y 1 A NH2 ARG 257 A NH2 ARG 250 1 Y 1 A CB GLU 266 A CB GLU 259 1 Y 1 A CG GLU 266 A CG GLU 259 1 Y 1 A CD GLU 266 A CD GLU 259 1 Y 1 A OE1 GLU 266 A OE1 GLU 259 1 Y 1 A OE2 GLU 266 A OE2 GLU 259 1 Y 1 A CB SER 267 A CB SER 260 1 Y 1 A OG SER 267 A OG SER 260 1 Y 1 A CZ ARG 282 A CZ ARG 275 1 Y 1 A NH1 ARG 282 A NH1 ARG 275 1 Y 1 A NH2 ARG 282 A NH2 ARG 275 1 Y 1 A CD LYS 284 A CD LYS 277 1 Y 1 A CE LYS 284 A CE LYS 277 1 Y 1 A NZ LYS 284 A NZ LYS 277 1 Y 1 A CZ ARG 304 A CZ ARG 297 1 Y 1 A NH1 ARG 304 A NH1 ARG 297 1 Y 1 A NH2 ARG 304 A NH2 ARG 297 1 Y 1 A GLY 8 A GLY 1 1 Y 1 A ALA 9 A ALA 2 1 Y 1 A LYS 10 A LYS 3 1 Y 1 A GLY 307 A GLY 300 1 Y 1 A VAL 308 A VAL 301 1 Y 1 A ASN 309 A ASN 302 1 Y 1 A ALA 310 A ALA 303 1 Y 1 A TRP 311 A TRP 304 1 Y 1 A SER 312 A SER 305 1 Y 1 A GLU 24 -115.54 61.37 1 A ASP 63 -160.53 75.88 34.573 -0.960 0.000 0.000 -0.960 0.000 1.910 0.943 0.907 1). HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2). A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3). TWO MOLECULES OF 2-ETHOXYETHANOL FROM THE CRYSTALLIZATION BUFFER HAS BEEN MODELED INTO THE STRUCTURE. 4). AN UNKNOWN LIGAND HAS BEEN MODELED INTO THE STRUCTURE BETWEEN THE SIDECHAINS OF LEU 168 AND ARG 254. 5.) ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 0.278 0.22 0.223 2.000 27.94 1130 22103 5.100 99.260 10.889 0.153 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.217 0.197 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES BABINET MODEL WITH MASK 2.000 27.94 107 2470 17 0 2346 0.013 0.022 2466 0.003 0.020 2343 1.684 1.989 3341 1.188 3.000 5432 2.099 5.000 309 25.182 24.112 107 8.319 15.000 458 8.252 15.000 18 0.107 0.200 387 0.006 0.020 2707 0.002 0.020 487 0.180 0.300 532 0.123 0.300 2275 0.165 0.500 1206 0.081 0.500 1307 0.169 0.500 174 0.145 0.300 11 0.109 0.300 55 0.220 0.500 17 1.427 3.000 1513 0.385 3.000 605 2.420 5.000 2458 4.208 8.000 977 6.140 11.000 881 0.306 0.257 2.053 95 1504 1599 20 99.130 42.314 2.000 27.9 2GNO 22105 0.041 1 11.880 94.700 0.415 2.00 2.07 2.0 6860 3580 1 83.80 0.314 2.07 2.15 2.7 7034 3711 1 90.10 0.251 2.15 2.25 3.3 7757 4060 1 92.20 0.184 2.25 2.37 4.5 7788 4072 1 93.60 0.125 2.37 2.52 6.3 7968 4166 1 97.00 0.093 2.52 2.71 8.3 7792 4088 1 97.80 0.067 2.71 2.99 10.9 8351 4353 1 98.70 0.046 2.99 3.42 15.5 8021 4231 1 99.70 0.025 3.42 25.1 7896 4199 1 99.10 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran http://www.ccp4.ac.uk/main.html REFMAC 5.2.0005 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html XSCALE data extraction PDB sw-help@rcsb.rutgers.edu Nov. 1, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.701 data reduction XDS phasing SHARP V. 1 Crystal structure of a dna polymerase iii, gamma subunit-related protein (tm0771) from thermotoga maritima msb8 at 2.00 A resolution 1 N N 2 N N 3 N N 4 N N 4 N N 5 N N A ASP 11 A ASP 4 HELX_P A LYS 22 A LYS 15 1 1 12 A SER 36 A SER 29 HELX_P A LYS 51 A LYS 44 1 2 16 A GLY 70 A GLY 63 HELX_P A ASN 82 A ASN 75 1 3 13 A ASP 97 A ASP 90 HELX_P A MSE 101 A MSE 94 5 4 5 A THR 102 A THR 95 HELX_P A PHE 109 A PHE 102 1 5 8 A PHE 109 A PHE 102 HELX_P A GLU 115 A GLU 108 1 6 7 A ARG 128 A ARG 121 HELX_P A LEU 132 A LEU 125 5 7 5 A LEU 133 A LEU 126 HELX_P A SER 138 A SER 131 1 8 6 A PRO 148 A PRO 141 HELX_P A GLY 160 A GLY 153 1 9 13 A ASP 161 A ASP 154 HELX_P A LEU 166 A LEU 159 1 10 6 A PRO 167 A PRO 160 HELX_P A ARG 171 A ARG 164 5 11 5 A ASP 172 A ASP 165 HELX_P A LEU 197 A LEU 190 1 12 26 A GLU 198 A GLU 191 HELX_P A LEU 203 A LEU 196 1 13 6 A LYS 209 A LYS 202 HELX_P A VAL 227 A VAL 220 1 14 19 A GLU 228 A GLU 221 HELX_P A LYS 230 A LYS 223 5 15 3 A GLU 231 A GLU 224 HELX_P A ILE 243 A ILE 236 1 16 13 A GLY 245 A GLY 238 HELX_P A GLU 262 A GLU 255 1 17 18 A SER 267 A SER 260 HELX_P A ARG 282 A ARG 275 1 18 16 A VAL 283 A VAL 276 HELX_P A LEU 288 A LEU 281 5 19 6 A ASN 289 A ASN 282 HELX_P A ARG 306 A ARG 299 1 20 18 covale 1.341 both A ARG 100 A C ARG 93 1_555 A MSE 101 A N MSE 94 1_555 covale 1.331 both A MSE 101 A C MSE 94 1_555 A THR 102 A N THR 95 1_555 covale 1.329 both A LEU 190 A C LEU 183 1_555 A MSE 191 A N MSE 184 1_555 covale 1.337 both B A MSE 191 A C MSE 184 1_555 A GLU 192 A N GLU 185 1_555 covale 1.334 both A A MSE 191 A C MSE 184 1_555 A GLU 192 A N GLU 185 1_555 covale 1.330 both A LEU 294 A C LEU 287 1_555 A MSE 295 A N MSE 288 1_555 covale 1.328 both A MSE 295 A C MSE 288 1_555 A ASN 296 A N ASN 289 1_555 REPLICATION Structural genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-2, replication Q9WZM9_THEMA UNP 1 9 Q9WZM9 9 312 2GNO 9 312 Q9WZM9 A 1 2 305 1 expression tag GLY 8 2GNO A Q9WZM9 UNP 1 1 MET modified residue MSE 101 2GNO A Q9WZM9 UNP 101 94 1 MET modified residue MSE 191 2GNO A Q9WZM9 UNP 191 184 1 MET modified residue MSE 295 2GNO A Q9WZM9 UNP 295 288 5 parallel parallel parallel parallel A VAL 59 A VAL 52 A ILE 62 A ILE 55 A LYS 91 A LYS 84 A VAL 95 A VAL 88 A ALA 120 A ALA 113 A THR 126 A THR 119 A ILE 26 A ILE 19 A ASN 31 A ASN 24 A PHE 141 A PHE 134 A VAL 144 A VAL 137 BINDING SITE FOR RESIDUE UNL A 1 A UNL 1 Software 5 BINDING SITE FOR RESIDUE ETX A 3 A ETX 3 Software 3 BINDING SITE FOR RESIDUE ETX A 4 A ETX 4 Software 4 A LEU 168 A LEU 161 5 1_555 A ASP 172 A ASP 165 5 1_555 A GLY 210 A GLY 203 5 1_555 A TYR 214 A TYR 207 5 1_555 A ARG 254 A ARG 247 5 1_555 A GLU 219 A GLU 212 3 1_555 A ARG 223 A ARG 216 3 1_555 A VAL 227 A VAL 220 3 1_555 A LEU 43 A LEU 36 4 1_555 A PRO 54 A PRO 47 4 1_555 A VAL 59 A VAL 52 4 1_555 A LYS 230 A LYS 223 4 4_565 79 I 4