1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
Freund, C.
Zimmermann, J.
Kuehne, R.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
Biochemistry
BICHAW
0033
0006-2960
46
6971
6977
10.1021/bi700437r
17511475
Redox-Regulated Conformational Changes in an SH3 Domain
2007
NE
J.Biomol.Nmr
JBNME9
0800
0925-2738
32
94
94
10.1007/s10858-005-3984-1
16041492
NMR assignment of the reduced and oxidized forms of the human ADAP hSH3-1 domain.
2005
10.2210/pdb2gto/pdb
pdb_00002gto
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
1
SINGLE WAVELENGTH
M
1
1.0
11061.803
FYN-binding protein
hSH3-N (oxidized)
1
man
polymer
ADAP, FYN-T-binding protein, FYB-120/130, p120/p130, SLP-76-associated phosphoprotein, SLAP-130
no
no
EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTT
AVEIDYDSLKLKKDLE
EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTT
AVEIDYDSLKLKKDLE
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
Homo
Escherichia
sample
FYB, SLAP130
9606
Homo sapiens
562
Escherichia coli
database_2
pdbx_nmr_software
pdbx_nmr_spectrometer
pdbx_struct_assembly
pdbx_struct_oper_list
struct_ref_seq_dif
repository
Initial release
Version format compliance
Version format compliance
Data collection
Database references
Derived calculations
1
0
2007-06-05
1
1
2008-05-01
1
2
2011-07-13
1
3
2022-03-09
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_nmr_software.name
_pdbx_nmr_spectrometer.model
_struct_ref_seq_dif.details
Reduced form of the domain
RCSB
Y
RCSB
2006-04-28
REL
REL
closest to average after water refinement
200
20
3D_15N-separated_NOESY
3D_13C-separated_NOESY
150 mM NaCl
7.4
ambient
298
K
Simulated Annealing with XPLOR NHI followed by water refinement
Uniform (random) labeling with 15N
90% H2O/10% D2O
Uniform (random) labeling with 15N, 13C
90% H2O/10% D2O
Bruker, Rheinstetten
collection
XwinNMR
Bruker, Rheinstetten
processing
XwinNMR
Wayne Boucher
processing
Azara
Per Kraulis
data analysis
ANSIG
3.3
Brunger
structure solution
X-PLOR
Brunger
refinement
X-PLOR
600
Bruker
DRX
600
Bruker
AVANCE
GLU
1
n
1
GLU
1
A
LYS
2
n
2
LYS
2
A
LYS
3
n
3
LYS
3
A
GLU
4
n
4
GLU
4
A
GLN
5
n
5
GLN
5
A
LYS
6
n
6
LYS
6
A
GLU
7
n
7
GLU
7
A
LYS
8
n
8
LYS
8
A
GLU
9
n
9
GLU
9
A
LYS
10
n
10
LYS
10
A
LYS
11
n
11
LYS
11
A
GLU
12
n
12
GLU
12
A
GLN
13
n
13
GLN
13
A
GLU
14
n
14
GLU
14
A
ILE
15
n
15
ILE
15
A
LYS
16
n
16
LYS
16
A
LYS
17
n
17
LYS
17
A
LYS
18
n
18
LYS
18
A
PHE
19
n
19
PHE
19
A
LYS
20
n
20
LYS
20
A
LEU
21
n
21
LEU
21
A
THR
22
n
22
THR
22
A
GLY
23
n
23
GLY
23
A
PRO
24
n
24
PRO
24
A
ILE
25
n
25
ILE
25
A
GLN
26
n
26
GLN
26
A
VAL
27
n
27
VAL
27
A
ILE
28
n
28
ILE
28
A
HIS
29
n
29
HIS
29
A
LEU
30
n
30
LEU
30
A
ALA
31
n
31
ALA
31
A
LYS
32
n
32
LYS
32
A
ALA
33
n
33
ALA
33
A
CYS
34
n
34
CYS
34
A
CYS
35
n
35
CYS
35
A
ASP
36
n
36
ASP
36
A
VAL
37
n
37
VAL
37
A
LYS
38
n
38
LYS
38
A
GLY
39
n
39
GLY
39
A
GLY
40
n
40
GLY
40
A
LYS
41
n
41
LYS
41
A
ASN
42
n
42
ASN
42
A
GLU
43
n
43
GLU
43
A
LEU
44
n
44
LEU
44
A
SER
45
n
45
SER
45
A
PHE
46
n
46
PHE
46
A
LYS
47
n
47
LYS
47
A
GLN
48
n
48
GLN
48
A
GLY
49
n
49
GLY
49
A
GLU
50
n
50
GLU
50
A
GLN
51
n
51
GLN
51
A
ILE
52
n
52
ILE
52
A
GLU
53
n
53
GLU
53
A
ILE
54
n
54
ILE
54
A
ILE
55
n
55
ILE
55
A
ARG
56
n
56
ARG
56
A
ILE
57
n
57
ILE
57
A
THR
58
n
58
THR
58
A
ASP
59
n
59
ASP
59
A
ASN
60
n
60
ASN
60
A
PRO
61
n
61
PRO
61
A
GLU
62
n
62
GLU
62
A
GLY
63
n
63
GLY
63
A
LYS
64
n
64
LYS
64
A
TRP
65
n
65
TRP
65
A
LEU
66
n
66
LEU
66
A
GLY
67
n
67
GLY
67
A
ARG
68
n
68
ARG
68
A
THR
69
n
69
THR
69
A
ALA
70
n
70
ALA
70
A
ARG
71
n
71
ARG
71
A
GLY
72
n
72
GLY
72
A
SER
73
n
73
SER
73
A
TYR
74
n
74
TYR
74
A
GLY
75
n
75
GLY
75
A
TYR
76
n
76
TYR
76
A
ILE
77
n
77
ILE
77
A
LYS
78
n
78
LYS
78
A
THR
79
n
79
THR
79
A
THR
80
n
80
THR
80
A
ALA
81
n
81
ALA
81
A
VAL
82
n
82
VAL
82
A
GLU
83
n
83
GLU
83
A
ILE
84
n
84
ILE
84
A
ASP
85
n
85
ASP
85
A
TYR
86
n
86
TYR
86
A
ASP
87
n
87
ASP
87
A
SER
88
n
88
SER
88
A
LEU
89
n
89
LEU
89
A
LYS
90
n
90
LYS
90
A
LEU
91
n
91
LEU
91
A
LYS
92
n
92
LYS
92
A
LYS
93
n
93
LYS
93
A
ASP
94
n
94
ASP
94
A
LEU
95
n
95
LEU
95
A
GLU
96
n
96
GLU
96
A
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ALA
33
A
N
ALA
33
A
O
GLU
50
A
O
GLU
50
A
N
GLU
53
A
N
GLU
53
A
O
ARG
68
A
O
ARG
68
A
N
GLY
67
A
N
GLY
67
A
O
GLY
75
A
O
GLY
75
1
A
A
HE2
HG12
PHE
ILE
46
77
1.28
1
A
A
HB2
HD12
HIS
ILE
29
54
1.34
2
A
A
HE2
HG12
PHE
ILE
46
77
1.23
3
A
A
OE1
HZ1
GLU
LYS
12
16
1.59
3
A
A
OE1
HH12
GLU
ARG
50
71
1.60
4
A
A
HE2
HG12
PHE
ILE
46
77
1.16
4
A
A
OE1
HZ1
GLU
LYS
12
16
1.59
4
A
A
OE2
HZ1
GLU
LYS
43
78
1.60
5
A
A
HE2
HG12
PHE
ILE
46
77
1.28
5
A
A
HG23
HE1
VAL
PHE
37
46
1.32
5
A
A
OE2
HZ1
GLU
LYS
43
64
1.59
6
A
A
HG23
HE1
VAL
PHE
37
46
1.32
6
A
A
HG2
H
LYS
GLN
47
48
1.33
6
A
A
HE2
HG12
PHE
ILE
46
77
1.35
7
A
A
HG23
HE1
VAL
PHE
37
46
1.15
7
A
A
HG2
H
LYS
GLN
47
48
1.26
7
A
A
HB3
HB3
ARG
LEU
56
66
1.29
9
A
A
HE2
HG12
PHE
ILE
46
77
1.28
9
A
A
HZ3
OE1
LYS
GLU
11
14
1.59
10
A
A
HE2
HG12
PHE
ILE
46
77
1.22
10
A
A
HG13
H
ILE
GLN
25
26
1.31
10
A
A
HG21
HE1
VAL
PHE
37
46
1.32
11
A
A
HB3
HB3
ARG
LEU
56
66
1.31
12
A
A
HE2
HG12
PHE
ILE
46
77
1.32
13
A
A
HE2
HG12
PHE
ILE
46
77
1.29
13
A
A
HB
HG22
ILE
ILE
25
55
1.30
13
A
A
HG23
HE1
VAL
PHE
37
46
1.35
14
A
A
HE2
HG12
PHE
ILE
46
77
1.26
14
A
A
HB2
HD11
HIS
ILE
29
54
1.31
15
A
A
HE2
HG12
PHE
ILE
46
77
1.21
15
A
A
HB2
HD11
HIS
ILE
29
54
1.29
15
A
A
HG1
O
THR
LYS
58
64
1.60
16
A
A
HE2
HG12
PHE
ILE
46
77
1.17
16
A
A
HD12
HG12
ILE
VAL
52
82
1.35
17
A
A
HE1
HD1
HIS
TYR
29
86
1.26
17
A
A
HE2
HG12
PHE
ILE
46
77
1.32
17
A
A
HB2
HD13
HIS
ILE
29
54
1.34
18
A
A
HG21
HE1
VAL
PHE
37
46
1.25
18
A
A
HG13
H
ILE
GLN
25
26
1.31
20
A
A
HG22
HE1
VAL
PHE
37
46
1.31
6
A
ARG
56
0.092
SIDE CHAIN
16
A
A
CB
SG
CYS
CYS
35
35
0.103
0.017
1.818
1.921
N
1
A
GLU
4
-145.68
-63.38
1
A
GLU
7
58.05
87.17
1
A
GLU
9
-114.55
-153.60
1
A
LYS
20
60.84
75.48
1
A
THR
22
-56.21
104.94
1
A
CYS
35
70.29
178.56
1
A
PRO
61
-38.50
-26.81
1
A
LEU
91
64.72
84.56
1
A
LEU
95
57.55
72.75
2
A
LYS
2
-124.52
-83.47
2
A
GLU
4
-132.69
-36.57
2
A
LYS
20
53.92
74.44
2
A
THR
22
-56.33
109.78
2
A
CYS
35
70.91
169.47
2
A
SER
45
-81.07
40.30
2
A
PRO
61
-46.74
105.40
2
A
GLU
62
-162.94
-58.58
2
A
LEU
89
-103.06
-63.59
2
A
LEU
95
-165.33
-51.59
3
A
LYS
2
-141.76
-50.80
3
A
LYS
6
179.37
-49.20
3
A
GLU
7
-178.27
74.99
3
A
LYS
20
56.29
78.62
3
A
CYS
35
72.64
162.87
3
A
LEU
91
-101.03
-73.10
3
A
LYS
92
-166.76
52.39
3
A
ASP
94
55.20
-96.21
4
A
GLU
4
64.59
115.10
4
A
LYS
10
-67.74
6.15
4
A
LYS
20
55.35
81.10
4
A
THR
22
46.83
96.07
4
A
CYS
35
74.32
167.74
4
A
SER
45
-81.12
47.07
4
A
PRO
61
-34.20
-28.54
4
A
LYS
93
-148.81
-44.19
5
A
LYS
10
-107.74
-60.82
5
A
LYS
20
65.66
75.22
5
A
THR
22
-68.35
84.70
5
A
GLN
26
-133.83
-81.48
5
A
VAL
27
178.74
152.77
5
A
CYS
35
58.39
175.87
5
A
PRO
61
-36.24
-37.46
6
A
GLU
4
65.83
170.41
6
A
LYS
20
59.94
74.39
6
A
THR
22
-69.42
90.51
6
A
CYS
35
68.10
-179.14
6
A
GLU
62
72.20
-24.62
6
A
LYS
90
-177.47
-49.09
6
A
LYS
93
-146.22
38.45
7
A
LYS
6
80.43
14.98
7
A
LYS
20
62.39
77.59
7
A
CYS
35
70.78
177.64
7
A
SER
45
-82.96
43.81
7
A
ASN
60
-39.58
140.83
7
A
PRO
61
-35.60
-25.53
7
A
LYS
92
-149.03
27.52
7
A
LEU
95
60.58
76.63
8
A
LYS
2
-105.87
-60.72
8
A
LYS
3
74.47
-53.13
8
A
GLU
7
45.68
76.16
8
A
LYS
20
53.37
72.22
8
A
CYS
35
67.91
-179.32
8
A
SER
45
-89.89
38.45
8
A
GLU
62
-177.52
-47.20
8
A
LYS
90
64.68
95.63
8
A
LEU
95
77.25
86.23
9
A
LYS
2
55.86
81.96
9
A
LYS
6
-118.00
76.68
9
A
LYS
20
60.89
75.20
9
A
THR
22
64.79
-69.12
9
A
ILE
25
-138.66
-48.09
9
A
GLN
26
71.01
123.65
9
A
CYS
35
69.45
175.90
9
A
SER
45
-81.62
45.17
9
A
PRO
61
-63.39
47.66
10
A
GLN
5
-125.25
-68.85
10
A
LYS
8
59.27
72.09
10
A
GLU
9
173.96
-62.79
10
A
LYS
20
61.16
76.04
10
A
ILE
25
-106.37
-76.82
10
A
GLN
26
72.41
141.12
10
A
CYS
35
63.73
164.94
10
A
PRO
61
-19.68
-52.64
10
A
LYS
93
-160.40
112.02
11
A
LYS
3
-115.86
72.77
11
A
GLN
5
58.37
85.38
11
A
GLU
9
69.07
99.12
11
A
LYS
20
57.37
75.52
11
A
CYS
35
61.26
174.67
11
A
LYS
90
-106.81
-70.35
11
A
LEU
91
51.96
89.37
11
A
ASP
94
-172.13
27.73
12
A
LYS
3
-147.11
25.51
12
A
GLU
4
-101.02
-147.14
12
A
GLN
5
72.41
34.64
12
A
LYS
20
55.41
74.68
12
A
GLN
26
70.96
161.84
12
A
CYS
35
71.22
167.42
12
A
PRO
61
-59.14
103.76
12
A
GLU
62
69.97
-12.45
12
A
LEU
91
70.37
-76.27
12
A
LYS
92
-171.19
-43.32
12
A
LYS
93
62.44
91.57
12
A
LEU
95
-168.17
-48.32
13
A
LYS
20
59.97
79.53
13
A
THR
22
60.41
-47.55
13
A
GLN
26
-110.93
-93.71
13
A
VAL
27
170.92
149.40
13
A
CYS
35
68.73
178.46
13
A
PRO
61
-21.91
136.75
13
A
GLU
62
87.52
-35.60
13
A
LYS
90
74.12
-32.35
13
A
LEU
95
63.12
93.13
14
A
GLN
26
-110.14
-84.31
14
A
VAL
27
-177.62
136.78
14
A
CYS
35
68.81
-179.95
14
A
SER
45
-85.86
41.95
14
A
PRO
61
-64.23
12.41
14
A
LEU
89
-93.48
-63.94
15
A
LYS
2
-145.33
49.45
15
A
GLN
5
64.96
95.07
15
A
GLU
7
-87.02
-91.12
15
A
LYS
20
59.50
71.92
15
A
CYS
35
70.11
176.07
15
A
SER
45
-85.84
45.89
15
A
LYS
93
-134.74
-82.83
16
A
GLU
9
-72.85
46.13
16
A
LYS
20
51.67
76.21
16
A
CYS
35
71.15
175.11
16
A
SER
45
-88.00
43.91
16
A
PRO
61
-56.60
-78.76
17
A
GLU
4
75.10
-65.81
17
A
GLN
5
62.78
-59.77
17
A
LYS
20
56.54
75.24
17
A
CYS
35
72.74
164.70
17
A
PRO
61
-26.10
94.77
17
A
GLU
62
173.58
-51.61
17
A
LEU
89
-104.36
-64.22
17
A
LEU
95
-90.53
-75.75
18
A
LYS
6
-102.12
-61.74
18
A
GLU
7
40.33
72.01
18
A
LYS
8
-164.79
107.71
18
A
LYS
20
54.08
73.41
18
A
ILE
25
-127.07
-70.59
18
A
GLN
26
70.39
131.37
18
A
CYS
35
62.50
-174.11
18
A
LYS
90
66.94
131.05
18
A
LEU
91
69.37
109.80
19
A
LYS
3
65.52
-177.67
19
A
LYS
8
-160.57
88.86
19
A
LYS
20
58.48
76.42
19
A
CYS
35
66.45
-175.84
19
A
PRO
61
-58.54
-80.73
19
A
LYS
90
53.70
80.49
19
A
LYS
93
-174.75
115.03
19
A
LEU
95
-178.30
102.80
20
A
LYS
3
-136.82
-50.02
20
A
GLU
7
-144.47
25.00
20
A
PRO
61
-63.74
83.88
20
A
LEU
95
-137.46
-74.95
Oxidized form of ADAP hSH3-N
1
N
N
A
LYS
10
A
LYS
10
HELX_P
A
PHE
19
A
PHE
19
1
1
10
A
TYR
86
A
TYR
86
HELX_P
A
LEU
91
A
LEU
91
1
2
6
disulf
2.102
A
CYS
34
A
SG
CYS
34
1_555
A
CYS
35
A
SG
CYS
35
1_555
SIGNALING PROTEIN
helically extended SH3 domain (hSH3), SIGNALING PROTEIN
FYB_HUMAN
UNP
1
486
O15117
EKKEQKEKEKKEQEIKKKFKLTGPIQVIHLAKACCDVKGGKNELSFKQGEQIEIIRITDNPEGKWLGRTARGSYGYIKTT
AVEIDYDSLKLKKD
486
579
2GTO
1
94
O15117
A
1
1
94
1
cloning artifact
LEU
95
2GTO
A
O15117
UNP
95
1
cloning artifact
GLU
96
2GTO
A
O15117
UNP
96
4
anti-parallel
anti-parallel
anti-parallel
A
HIS
29
A
HIS
29
A
ALA
33
A
ALA
33
A
GLU
50
A
GLU
50
A
ARG
56
A
ARG
56
A
TRP
65
A
TRP
65
A
THR
69
A
THR
69
A
TYR
74
A
TYR
74
A
ILE
77
A
ILE
77