data_2H05 # _entry.id 2H05 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.377 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2H05 pdb_00002h05 10.2210/pdb2h05/pdb NDB AD0064 ? ? RCSB RCSB037763 ? ? WWPDB D_1000037763 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1Z7I . unspecified PDB 2DLJ . unspecified PDB 2GPX . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2H05 _pdbx_database_status.recvd_initial_deposition_date 2006-05-14 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, J.' 1 'Sheng, J.' 2 'Huang, Z.' 3 # _citation.id primary _citation.title 'Selenium derivatization of nucleic acids for crystallography.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 35 _citation.page_first 477 _citation.page_last 485 _citation.year 2007 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17169989 _citation.pdbx_database_id_DOI 10.1093/nar/gkl1070 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, J.' 1 ? primary 'Sheng, J.' 2 ? primary 'Carrasco, N.' 3 ? primary 'Huang, Z.' 4 ? # _cell.entry_id 2H05 _cell.length_a 42.048 _cell.length_b 42.048 _cell.length_c 24.270 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2H05 _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*GP*TP*GP*(BRU)P*AP*CP*AP*C)-3'" 2491.487 1 ? '5-BROMO-Modified T4, BRU' ? ? 2 water nat water 18.015 33 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DG)(DT)(DG)(BRU)(DA)(DC)(DA)(DC)' _entity_poly.pdbx_seq_one_letter_code_can GTGUACAC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DT n 1 3 DG n 1 4 BRU n 1 5 DA n 1 6 DC n 1 7 DA n 1 8 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Solid Phase Synthesis via Phosphoramidite Chemistry' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2H05 _struct_ref.pdbx_db_accession 2H05 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2H05 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 8 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2H05 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 8 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight BRU 'DNA linking' n "5-BROMO-2'-DEOXYURIDINE-5'-MONOPHOSPHATE" ? 'C9 H12 Br N2 O8 P' 387.078 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 # _exptl.entry_id 2H05 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.66 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 283 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.0 _exptl_crystal_grow.pdbx_details '8mM MgCl2, 4mM Spermine, 40% MPD, pH 6.0, VAPOR DIFFUSION, HANGING DROP, temperature 283K' _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgCl2 ? ? ? 1 2 1 Spermine ? ? ? 1 3 1 MPD ? ? ? 1 4 1 H2O ? ? ? 1 5 2 MgCl2 ? ? ? 1 6 2 Spermine ? ? ? 1 7 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 210' _diffrn_detector.pdbx_collection_date 2006-05-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator Si _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.9199 1.0 2 0.9202 1.0 3 0.9400 1.0 4 1.100 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X12C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X12C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list '0.9199, 0.9202, 0.9400, 1.100' # _reflns.entry_id 2H05 _reflns.observed_criterion_sigma_I -3 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 18.81 _reflns.d_resolution_high 1.8 _reflns.number_obs 2248 _reflns.number_all 2248 _reflns.percent_possible_obs 99.4 _reflns.pdbx_Rmerge_I_obs 0.045 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 12.1 _reflns.B_iso_Wilson_estimate 29.8 _reflns.pdbx_redundancy 12.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.80 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 95.8 _reflns_shell.Rmerge_I_obs 0.313 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.7 _reflns_shell.pdbx_redundancy 7.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 203 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2H05 _refine.ls_number_reflns_obs 2036 _refine.ls_number_reflns_all 2036 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 532897.43 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 18.81 _refine.ls_d_res_high 1.80 _refine.ls_percent_reflns_obs 91.1 _refine.ls_R_factor_obs 0.213 _refine.ls_R_factor_all 0.22 _refine.ls_R_factor_R_work 0.213 _refine.ls_R_factor_R_free 0.248 _refine.ls_R_factor_R_free_error 0.018 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_number_reflns_R_free 188 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 32.5 _refine.aniso_B[1][1] 2.20 _refine.aniso_B[2][2] 2.20 _refine.aniso_B[3][3] -4.41 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.32 _refine.solvent_model_param_bsol 41.4104 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'pdb entry 1Z7I' _refine.pdbx_method_to_determine_struct 'MAD, SAD' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values DNA-RNA _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2H05 _refine_analyze.Luzzati_coordinate_error_obs 0.23 _refine_analyze.Luzzati_sigma_a_obs 0.20 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.28 _refine_analyze.Luzzati_sigma_a_free 0.20 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 161 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 33 _refine_hist.number_atoms_total 194 _refine_hist.d_res_high 1.80 _refine_hist.d_res_low 18.81 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.9 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 28.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.16 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.80 _refine_ls_shell.d_res_low 1.91 _refine_ls_shell.number_reflns_R_work 247 _refine_ls_shell.R_factor_R_work 0.273 _refine_ls_shell.percent_reflns_obs 75.8 _refine_ls_shell.R_factor_R_free 0.413 _refine_ls_shell.R_factor_R_free_error 0.078 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 28 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 247 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 protein_rep.param protein.top 'X-RAY DIFFRACTION' 2 water_rep.param dna-rna.top 'X-RAY DIFFRACTION' 3 ion.param water.top 'X-RAY DIFFRACTION' 4 dna-rna_ums.par ion.top 'X-RAY DIFFRACTION' # _struct.entry_id 2H05 _struct.title 'Br Derivitation of A-DNA Octamer GTG(Ubr)ACAC' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2H05 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'Br-DNA, Se-DNA, Se-Br-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DG 3 "O3'" ? ? ? 1_555 A BRU 4 P ? ? A DG 3 A BRU 4 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A BRU 4 "O3'" ? ? ? 1_555 A DA 5 P ? ? A BRU 4 A DA 5 1_555 ? ? ? ? ? ? ? 1.601 ? ? hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 A DC 8 N3 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 A DC 8 O2 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 A DC 8 N4 ? ? A DG 1 A DC 8 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DT 2 N3 ? ? ? 1_555 A DA 7 N1 ? ? A DT 2 A DA 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DT 2 O4 ? ? ? 1_555 A DA 7 N6 ? ? A DT 2 A DA 7 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 6 N3 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 6 O2 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 6 N4 ? ? A DG 3 A DC 6 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A BRU 4 N3 ? ? ? 1_555 A DA 5 N1 ? ? A BRU 4 A DA 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A BRU 4 O4 ? ? ? 1_555 A DA 5 N6 ? ? A BRU 4 A DA 5 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A BRU 4 N3 ? ? A DA 5 A BRU 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A BRU 4 O4 ? ? A DA 5 A BRU 4 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 6 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 6 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 6 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 6 A DG 3 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 7 N1 ? ? ? 1_555 A DT 2 N3 ? ? A DA 7 A DT 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DA 7 N6 ? ? ? 1_555 A DT 2 O4 ? ? A DA 7 A DT 2 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 8 N3 ? ? ? 1_555 A DG 1 N1 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 8 N4 ? ? ? 1_555 A DG 1 O6 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 8 O2 ? ? ? 1_555 A DG 1 N2 ? ? A DC 8 A DG 1 7_556 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 2H05 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2H05 _atom_sites.fract_transf_matrix[1][1] 0.023782 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023782 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.041203 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C N O P # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_alt_id _atom_site.label_comp_id _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.label_seq_id _atom_site.pdbx_PDB_ins_code _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_seq_id _atom_site.auth_comp_id _atom_site.auth_asym_id _atom_site.auth_atom_id _atom_site.pdbx_PDB_model_num ATOM 1 O "O5'" . DG A 1 1 ? -1.584 7.084 17.688 1.00 28.90 ? 1 DG A "O5'" 1 ATOM 2 C "C5'" . DG A 1 1 ? -3.010 6.954 17.578 1.00 28.37 ? 1 DG A "C5'" 1 ATOM 3 C "C4'" . DG A 1 1 ? -3.677 8.006 16.723 1.00 27.33 ? 1 DG A "C4'" 1 ATOM 4 O "O4'" . DG A 1 1 ? -3.584 9.235 17.478 1.00 26.10 ? 1 DG A "O4'" 1 ATOM 5 C "C3'" . DG A 1 1 ? -2.960 8.304 15.410 1.00 28.41 ? 1 DG A "C3'" 1 ATOM 6 O "O3'" . DG A 1 1 ? -3.480 7.674 14.256 1.00 29.76 ? 1 DG A "O3'" 1 ATOM 7 C "C2'" . DG A 1 1 ? -3.089 9.807 15.241 1.00 27.50 ? 1 DG A "C2'" 1 ATOM 8 C "C1'" . DG A 1 1 ? -3.407 10.353 16.617 1.00 26.17 ? 1 DG A "C1'" 1 ATOM 9 N N9 . DG A 1 1 ? -2.107 10.848 17.102 1.00 25.80 ? 1 DG A N9 1 ATOM 10 C C8 . DG A 1 1 ? -1.160 10.206 17.869 1.00 24.90 ? 1 DG A C8 1 ATOM 11 N N7 . DG A 1 1 ? -0.070 10.923 18.057 1.00 25.91 ? 1 DG A N7 1 ATOM 12 C C5 . DG A 1 1 ? -0.318 12.103 17.367 1.00 25.81 ? 1 DG A C5 1 ATOM 13 C C6 . DG A 1 1 ? 0.520 13.281 17.164 1.00 26.00 ? 1 DG A C6 1 ATOM 14 O O6 . DG A 1 1 ? 1.669 13.512 17.597 1.00 26.40 ? 1 DG A O6 1 ATOM 15 N N1 . DG A 1 1 ? -0.128 14.226 16.375 1.00 25.76 ? 1 DG A N1 1 ATOM 16 C C2 . DG A 1 1 ? -1.401 14.095 15.852 1.00 27.54 ? 1 DG A C2 1 ATOM 17 N N2 . DG A 1 1 ? -1.859 15.147 15.135 1.00 26.10 ? 1 DG A N2 1 ATOM 18 N N3 . DG A 1 1 ? -2.173 13.027 16.025 1.00 25.95 ? 1 DG A N3 1 ATOM 19 C C4 . DG A 1 1 ? -1.576 12.082 16.789 1.00 26.03 ? 1 DG A C4 1 ATOM 20 P P . DT A 1 2 ? -2.461 7.276 13.065 1.00 31.11 ? 2 DT A P 1 ATOM 21 O OP1 . DT A 1 2 ? -3.202 6.380 12.140 1.00 33.94 ? 2 DT A OP1 1 ATOM 22 O OP2 . DT A 1 2 ? -1.158 6.832 13.617 1.00 31.25 ? 2 DT A OP2 1 ATOM 23 O "O5'" . DT A 1 2 ? -2.196 8.660 12.329 1.00 31.33 ? 2 DT A "O5'" 1 ATOM 24 C "C5'" . DT A 1 2 ? -3.276 9.421 11.809 1.00 32.33 ? 2 DT A "C5'" 1 ATOM 25 C "C4'" . DT A 1 2 ? -2.761 10.682 11.165 1.00 33.36 ? 2 DT A "C4'" 1 ATOM 26 O "O4'" . DT A 1 2 ? -2.255 11.537 12.225 1.00 32.65 ? 2 DT A "O4'" 1 ATOM 27 C "C3'" . DT A 1 2 ? -1.566 10.446 10.242 1.00 34.16 ? 2 DT A "C3'" 1 ATOM 28 O "O3'" . DT A 1 2 ? -1.883 10.386 8.865 1.00 37.08 ? 2 DT A "O3'" 1 ATOM 29 C "C2'" . DT A 1 2 ? -0.672 11.652 10.465 1.00 33.34 ? 2 DT A "C2'" 1 ATOM 30 C "C1'" . DT A 1 2 ? -1.173 12.324 11.729 1.00 31.72 ? 2 DT A "C1'" 1 ATOM 31 N N1 . DT A 1 2 ? -0.147 12.086 12.806 1.00 29.54 ? 2 DT A N1 1 ATOM 32 C C2 . DT A 1 2 ? 0.740 13.135 13.032 1.00 28.53 ? 2 DT A C2 1 ATOM 33 O O2 . DT A 1 2 ? 0.647 14.218 12.456 1.00 26.98 ? 2 DT A O2 1 ATOM 34 N N3 . DT A 1 2 ? 1.741 12.880 13.942 1.00 24.44 ? 2 DT A N3 1 ATOM 35 C C4 . DT A 1 2 ? 1.970 11.727 14.660 1.00 26.76 ? 2 DT A C4 1 ATOM 36 O O4 . DT A 1 2 ? 2.938 11.649 15.422 1.00 29.04 ? 2 DT A O4 1 ATOM 37 C C5 . DT A 1 2 ? 0.982 10.635 14.424 1.00 25.89 ? 2 DT A C5 1 ATOM 38 C C7 . DT A 1 2 ? 1.133 9.351 15.184 1.00 27.49 ? 2 DT A C7 1 ATOM 39 C C6 . DT A 1 2 ? -0.035 10.886 13.505 1.00 27.35 ? 2 DT A C6 1 ATOM 40 P P . DG A 1 3 ? -0.796 9.762 7.844 1.00 40.47 ? 3 DG A P 1 ATOM 41 O OP1 . DG A 1 3 ? -1.562 9.151 6.732 1.00 40.94 ? 3 DG A OP1 1 ATOM 42 O OP2 . DG A 1 3 ? 0.228 8.963 8.592 1.00 37.43 ? 3 DG A OP2 1 ATOM 43 O "O5'" . DG A 1 3 ? -0.041 11.053 7.317 1.00 39.82 ? 3 DG A "O5'" 1 ATOM 44 C "C5'" . DG A 1 3 ? 1.238 11.366 7.812 1.00 37.45 ? 3 DG A "C5'" 1 ATOM 45 C "C4'" . DG A 1 3 ? 1.557 12.808 7.529 1.00 36.54 ? 3 DG A "C4'" 1 ATOM 46 O "O4'" . DG A 1 3 ? 1.514 13.468 8.820 1.00 34.59 ? 3 DG A "O4'" 1 ATOM 47 C "C3'" . DG A 1 3 ? 2.983 12.951 7.009 1.00 36.22 ? 3 DG A "C3'" 1 ATOM 48 O "O3'" . DG A 1 3 ? 3.078 13.349 5.649 1.00 37.02 ? 3 DG A "O3'" 1 ATOM 49 C "C2'" . DG A 1 3 ? 3.658 13.954 7.923 1.00 35.13 ? 3 DG A "C2'" 1 ATOM 50 C "C1'" . DG A 1 3 ? 2.720 14.161 9.097 1.00 33.65 ? 3 DG A "C1'" 1 ATOM 51 N N9 . DG A 1 3 ? 3.272 13.311 10.163 1.00 29.60 ? 3 DG A N9 1 ATOM 52 C C8 . DG A 1 3 ? 2.890 12.059 10.594 1.00 29.35 ? 3 DG A C8 1 ATOM 53 N N7 . DG A 1 3 ? 3.655 11.586 11.551 1.00 29.20 ? 3 DG A N7 1 ATOM 54 C C5 . DG A 1 3 ? 4.589 12.587 11.767 1.00 26.36 ? 3 DG A C5 1 ATOM 55 C C6 . DG A 1 3 ? 5.700 12.675 12.707 1.00 25.13 ? 3 DG A C6 1 ATOM 56 O O6 . DG A 1 3 ? 6.080 11.849 13.576 1.00 24.58 ? 3 DG A O6 1 ATOM 57 N N1 . DG A 1 3 ? 6.372 13.881 12.558 1.00 23.62 ? 3 DG A N1 1 ATOM 58 C C2 . DG A 1 3 ? 6.052 14.868 11.660 1.00 23.56 ? 3 DG A C2 1 ATOM 59 N N2 . DG A 1 3 ? 6.832 15.944 11.653 1.00 24.76 ? 3 DG A N2 1 ATOM 60 N N3 . DG A 1 3 ? 5.039 14.808 10.819 1.00 24.63 ? 3 DG A N3 1 ATOM 61 C C4 . DG A 1 3 ? 4.362 13.656 10.922 1.00 27.31 ? 3 DG A C4 1 HETATM 62 N N1 . BRU A 1 4 ? 8.003 14.044 8.591 1.00 28.23 ? 4 BRU A N1 1 HETATM 63 C C2 . BRU A 1 4 ? 8.885 13.921 9.642 1.00 28.20 ? 4 BRU A C2 1 HETATM 64 N N3 . BRU A 1 4 ? 8.728 12.792 10.421 1.00 25.37 ? 4 BRU A N3 1 HETATM 65 C C4 . BRU A 1 4 ? 7.812 11.749 10.247 1.00 25.81 ? 4 BRU A C4 1 HETATM 66 C C5 . BRU A 1 4 ? 6.874 11.900 9.082 1.00 27.58 ? 4 BRU A C5 1 HETATM 67 C C6 . BRU A 1 4 ? 7.025 13.076 8.330 1.00 28.81 ? 4 BRU A C6 1 HETATM 68 O O2 . BRU A 1 4 ? 9.775 14.751 9.855 1.00 27.54 ? 4 BRU A O2 1 HETATM 69 O O4 . BRU A 1 4 ? 7.820 10.815 11.011 1.00 24.09 ? 4 BRU A O4 1 HETATM 70 BR BR . BRU A 1 4 ? 5.737 10.670 8.761 0.95 31.12 ? 4 BRU A BR 1 HETATM 71 C "C1'" . BRU A 1 4 ? 8.233 15.263 7.738 1.00 32.24 ? 4 BRU A "C1'" 1 HETATM 72 C "C2'" . BRU A 1 4 ? 8.978 14.821 6.493 1.00 32.64 ? 4 BRU A "C2'" 1 HETATM 73 C "C3'" . BRU A 1 4 ? 7.996 14.942 5.342 1.00 33.83 ? 4 BRU A "C3'" 1 HETATM 74 C "C4'" . BRU A 1 4 ? 6.803 15.701 5.915 1.00 33.78 ? 4 BRU A "C4'" 1 HETATM 75 O "O3'" . BRU A 1 4 ? 8.634 15.572 4.246 1.00 34.07 ? 4 BRU A "O3'" 1 HETATM 76 O "O4'" . BRU A 1 4 ? 6.896 15.557 7.355 1.00 33.10 ? 4 BRU A "O4'" 1 HETATM 77 C "C5'" . BRU A 1 4 ? 5.476 15.123 5.490 1.00 34.81 ? 4 BRU A "C5'" 1 HETATM 78 O "O5'" . BRU A 1 4 ? 5.541 13.710 5.451 1.00 35.74 ? 4 BRU A "O5'" 1 HETATM 79 P P . BRU A 1 4 ? 4.365 12.877 4.796 1.00 37.38 ? 4 BRU A P 1 HETATM 80 O OP1 . BRU A 1 4 ? 4.179 13.378 3.407 1.00 38.82 ? 4 BRU A OP1 1 HETATM 81 O OP2 . BRU A 1 4 ? 4.616 11.447 5.023 1.00 36.00 ? 4 BRU A OP2 1 ATOM 82 P P . DA A 1 5 ? 9.724 14.741 3.418 1.00 33.92 ? 5 DA A P 1 ATOM 83 O OP1 . DA A 1 5 ? 9.865 15.381 2.083 1.00 34.09 ? 5 DA A OP1 1 ATOM 84 O OP2 . DA A 1 5 ? 9.441 13.298 3.489 1.00 34.09 ? 5 DA A OP2 1 ATOM 85 O "O5'" . DA A 1 5 ? 11.042 15.039 4.268 1.00 31.37 ? 5 DA A "O5'" 1 ATOM 86 C "C5'" . DA A 1 5 ? 11.977 14.024 4.584 1.00 29.90 ? 5 DA A "C5'" 1 ATOM 87 C "C4'" . DA A 1 5 ? 12.994 14.557 5.565 1.00 28.27 ? 5 DA A "C4'" 1 ATOM 88 O "O4'" . DA A 1 5 ? 12.319 14.685 6.845 1.00 27.34 ? 5 DA A "O4'" 1 ATOM 89 C "C3'" . DA A 1 5 ? 14.162 13.611 5.813 1.00 27.98 ? 5 DA A "C3'" 1 ATOM 90 O "O3'" . DA A 1 5 ? 15.347 13.982 5.132 1.00 28.35 ? 5 DA A "O3'" 1 ATOM 91 C "C2'" . DA A 1 5 ? 14.381 13.622 7.318 1.00 27.26 ? 5 DA A "C2'" 1 ATOM 92 C "C1'" . DA A 1 5 ? 13.061 14.090 7.905 1.00 25.75 ? 5 DA A "C1'" 1 ATOM 93 N N9 . DA A 1 5 ? 12.313 12.917 8.373 1.00 23.58 ? 5 DA A N9 1 ATOM 94 C C8 . DA A 1 5 ? 11.221 12.298 7.780 1.00 23.23 ? 5 DA A C8 1 ATOM 95 N N7 . DA A 1 5 ? 10.799 11.229 8.428 1.00 21.79 ? 5 DA A N7 1 ATOM 96 C C5 . DA A 1 5 ? 11.651 11.146 9.528 1.00 21.90 ? 5 DA A C5 1 ATOM 97 C C6 . DA A 1 5 ? 11.716 10.238 10.615 1.00 21.76 ? 5 DA A C6 1 ATOM 98 N N6 . DA A 1 5 ? 10.874 9.201 10.779 1.00 22.65 ? 5 DA A N6 1 ATOM 99 N N1 . DA A 1 5 ? 12.679 10.433 11.536 1.00 22.04 ? 5 DA A N1 1 ATOM 100 C C2 . DA A 1 5 ? 13.513 11.479 11.382 1.00 22.57 ? 5 DA A C2 1 ATOM 101 N N3 . DA A 1 5 ? 13.548 12.408 10.412 1.00 22.63 ? 5 DA A N3 1 ATOM 102 C C4 . DA A 1 5 ? 12.585 12.181 9.507 1.00 23.52 ? 5 DA A C4 1 ATOM 103 P P . DC A 1 6 ? 16.267 12.812 4.537 1.00 31.39 ? 6 DC A P 1 ATOM 104 O OP1 . DC A 1 6 ? 17.307 13.445 3.692 1.00 30.85 ? 6 DC A OP1 1 ATOM 105 O OP2 . DC A 1 6 ? 15.417 11.723 4.002 1.00 28.73 ? 6 DC A OP2 1 ATOM 106 O "O5'" . DC A 1 6 ? 16.945 12.208 5.835 1.00 29.12 ? 6 DC A "O5'" 1 ATOM 107 C "C5'" . DC A 1 6 ? 17.703 13.048 6.690 1.00 29.23 ? 6 DC A "C5'" 1 ATOM 108 C "C4'" . DC A 1 6 ? 18.196 12.270 7.881 1.00 28.69 ? 6 DC A "C4'" 1 ATOM 109 O "O4'" . DC A 1 6 ? 17.074 12.107 8.786 1.00 26.93 ? 6 DC A "O4'" 1 ATOM 110 C "C3'" . DC A 1 6 ? 18.619 10.852 7.528 1.00 27.85 ? 6 DC A "C3'" 1 ATOM 111 O "O3'" . DC A 1 6 ? 20.012 10.712 7.294 1.00 29.58 ? 6 DC A "O3'" 1 ATOM 112 C "C2'" . DC A 1 6 ? 18.229 10.040 8.746 1.00 27.10 ? 6 DC A "C2'" 1 ATOM 113 C "C1'" . DC A 1 6 ? 17.152 10.849 9.439 1.00 25.99 ? 6 DC A "C1'" 1 ATOM 114 N N1 . DC A 1 6 ? 15.922 10.091 9.143 1.00 24.77 ? 6 DC A N1 1 ATOM 115 C C2 . DC A 1 6 ? 15.506 9.105 10.062 1.00 24.07 ? 6 DC A C2 1 ATOM 116 O O2 . DC A 1 6 ? 16.196 8.912 11.082 1.00 26.75 ? 6 DC A O2 1 ATOM 117 N N3 . DC A 1 6 ? 14.393 8.375 9.813 1.00 24.54 ? 6 DC A N3 1 ATOM 118 C C4 . DC A 1 6 ? 13.702 8.548 8.680 1.00 23.35 ? 6 DC A C4 1 ATOM 119 N N4 . DC A 1 6 ? 12.636 7.752 8.465 1.00 24.14 ? 6 DC A N4 1 ATOM 120 C C5 . DC A 1 6 ? 14.077 9.530 7.708 1.00 24.84 ? 6 DC A C5 1 ATOM 121 C C6 . DC A 1 6 ? 15.210 10.301 7.991 1.00 23.86 ? 6 DC A C6 1 ATOM 122 P P . DA A 1 7 ? 20.530 9.419 6.512 1.00 31.36 ? 7 DA A P 1 ATOM 123 O OP1 . DA A 1 7 ? 21.975 9.710 6.164 1.00 30.36 ? 7 DA A OP1 1 ATOM 124 O OP2 . DA A 1 7 ? 19.613 8.942 5.450 1.00 29.18 ? 7 DA A OP2 1 ATOM 125 O "O5'" . DA A 1 7 ? 20.544 8.332 7.667 1.00 28.95 ? 7 DA A "O5'" 1 ATOM 126 C "C5'" . DA A 1 7 ? 21.297 8.573 8.856 1.00 28.92 ? 7 DA A "C5'" 1 ATOM 127 C "C4'" . DA A 1 7 ? 21.288 7.362 9.758 1.00 28.92 ? 7 DA A "C4'" 1 ATOM 128 O "O4'" . DA A 1 7 ? 19.977 7.283 10.369 1.00 27.95 ? 7 DA A "O4'" 1 ATOM 129 C "C3'" . DA A 1 7 ? 21.497 6.033 9.046 1.00 29.50 ? 7 DA A "C3'" 1 ATOM 130 O "O3'" . DA A 1 7 ? 22.804 5.499 9.165 1.00 32.20 ? 7 DA A "O3'" 1 ATOM 131 C "C2'" . DA A 1 7 ? 20.510 5.080 9.692 1.00 28.06 ? 7 DA A "C2'" 1 ATOM 132 C "C1'" . DA A 1 7 ? 19.517 5.939 10.446 1.00 27.47 ? 7 DA A "C1'" 1 ATOM 133 N N9 . DA A 1 7 ? 18.237 5.870 9.731 1.00 24.18 ? 7 DA A N9 1 ATOM 134 C C8 . DA A 1 7 ? 17.821 6.616 8.667 1.00 23.74 ? 7 DA A C8 1 ATOM 135 N N7 . DA A 1 7 ? 16.632 6.277 8.209 1.00 25.18 ? 7 DA A N7 1 ATOM 136 C C5 . DA A 1 7 ? 16.236 5.245 9.048 1.00 23.37 ? 7 DA A C5 1 ATOM 137 C C6 . DA A 1 7 ? 15.064 4.482 9.113 1.00 23.10 ? 7 DA A C6 1 ATOM 138 N N6 . DA A 1 7 ? 14.025 4.668 8.307 1.00 23.26 ? 7 DA A N6 1 ATOM 139 N N1 . DA A 1 7 ? 14.985 3.527 10.061 1.00 23.48 ? 7 DA A N1 1 ATOM 140 C C2 . DA A 1 7 ? 16.013 3.386 10.913 1.00 26.15 ? 7 DA A C2 1 ATOM 141 N N3 . DA A 1 7 ? 17.166 4.068 10.968 1.00 26.15 ? 7 DA A N3 1 ATOM 142 C C4 . DA A 1 7 ? 17.213 4.987 9.993 1.00 25.24 ? 7 DA A C4 1 ATOM 143 P P . DC A 1 8 ? 23.284 4.405 8.084 1.00 35.37 ? 8 DC A P 1 ATOM 144 O OP1 . DC A 1 8 ? 24.775 4.356 8.235 1.00 34.40 ? 8 DC A OP1 1 ATOM 145 O OP2 . DC A 1 8 ? 22.703 4.700 6.759 1.00 34.66 ? 8 DC A OP2 1 ATOM 146 O "O5'" . DC A 1 8 ? 22.614 3.065 8.597 1.00 34.09 ? 8 DC A "O5'" 1 ATOM 147 C "C5'" . DC A 1 8 ? 22.897 2.580 9.906 1.00 37.18 ? 8 DC A "C5'" 1 ATOM 148 C "C4'" . DC A 1 8 ? 22.169 1.282 10.164 1.00 37.20 ? 8 DC A "C4'" 1 ATOM 149 O "O4'" . DC A 1 8 ? 20.735 1.508 10.127 1.00 37.26 ? 8 DC A "O4'" 1 ATOM 150 C "C3'" . DC A 1 8 ? 22.453 0.175 9.144 1.00 37.70 ? 8 DC A "C3'" 1 ATOM 151 O "O3'" . DC A 1 8 ? 22.279 -1.095 9.761 1.00 39.24 ? 8 DC A "O3'" 1 ATOM 152 C "C2'" . DC A 1 8 ? 21.270 0.277 8.205 1.00 37.63 ? 8 DC A "C2'" 1 ATOM 153 C "C1'" . DC A 1 8 ? 20.152 0.620 9.185 1.00 37.02 ? 8 DC A "C1'" 1 ATOM 154 N N1 . DC A 1 8 ? 19.038 1.303 8.487 1.00 33.66 ? 8 DC A N1 1 ATOM 155 C C2 . DC A 1 8 ? 17.746 0.774 8.610 1.00 33.54 ? 8 DC A C2 1 ATOM 156 O O2 . DC A 1 8 ? 17.565 -0.213 9.341 1.00 33.73 ? 8 DC A O2 1 ATOM 157 N N3 . DC A 1 8 ? 16.723 1.340 7.926 1.00 30.77 ? 8 DC A N3 1 ATOM 158 C C4 . DC A 1 8 ? 16.940 2.389 7.129 1.00 29.41 ? 8 DC A C4 1 ATOM 159 N N4 . DC A 1 8 ? 15.907 2.870 6.452 1.00 27.48 ? 8 DC A N4 1 ATOM 160 C C5 . DC A 1 8 ? 18.232 2.979 6.991 1.00 30.68 ? 8 DC A C5 1 ATOM 161 C C6 . DC A 1 8 ? 19.258 2.405 7.709 1.00 32.70 ? 8 DC A C6 1 HETATM 162 O O . HOH B 2 . ? 15.110 14.755 10.709 1.00 25.48 ? 9 HOH A O 1 HETATM 163 O O . HOH B 2 . ? -5.231 3.798 15.405 1.00 32.64 ? 10 HOH A O 1 HETATM 164 O O . HOH B 2 . ? 15.766 7.149 5.595 1.00 37.33 ? 11 HOH A O 1 HETATM 165 O O . HOH B 2 . ? 3.726 8.709 12.359 1.00 37.82 ? 12 HOH A O 1 HETATM 166 O O . HOH B 2 . ? -1.406 6.508 20.195 1.00 37.74 ? 13 HOH A O 1 HETATM 167 O O . HOH B 2 . ? 19.212 6.055 5.199 1.00 42.66 ? 14 HOH A O 1 HETATM 168 O O . HOH B 2 . ? 18.820 3.088 12.918 1.00 42.06 ? 15 HOH A O 1 HETATM 169 O O . HOH B 2 . ? -0.185 5.968 15.797 1.00 38.03 ? 16 HOH A O 1 HETATM 170 O O . HOH B 2 . ? 21.064 4.439 4.958 1.00 42.51 ? 17 HOH A O 1 HETATM 171 O O . HOH B 2 . ? 2.042 9.592 19.383 1.00 39.11 ? 18 HOH A O 1 HETATM 172 O O . HOH B 2 . ? -4.235 4.052 12.935 1.00 42.79 ? 19 HOH A O 1 HETATM 173 O O . HOH B 2 . ? 25.960 4.255 10.518 1.00 43.07 ? 20 HOH A O 1 HETATM 174 O O . HOH B 2 . ? -3.439 5.961 9.424 1.00 44.67 ? 21 HOH A O 1 HETATM 175 O O . HOH B 2 . ? 21.455 8.670 2.909 1.00 51.67 ? 22 HOH A O 1 HETATM 176 O O . HOH B 2 . ? 19.960 11.384 2.314 1.00 51.99 ? 23 HOH A O 1 HETATM 177 O O . HOH B 2 . ? 3.854 12.125 19.110 1.00 51.38 ? 24 HOH A O 1 HETATM 178 O O . HOH B 2 . ? 8.879 11.041 5.369 1.00 52.01 ? 25 HOH A O 1 HETATM 179 O O . HOH B 2 . ? 5.770 9.460 14.900 1.00 51.88 ? 26 HOH A O 1 HETATM 180 O O . HOH B 2 . ? 0.098 17.025 10.880 1.00 51.20 ? 27 HOH A O 1 HETATM 181 O O . HOH B 2 . ? 3.718 8.455 8.402 1.00 54.04 ? 28 HOH A O 1 HETATM 182 O O . HOH B 2 . ? 0.520 14.992 3.428 1.00 58.53 ? 29 HOH A O 1 HETATM 183 O O . HOH B 2 . ? 4.928 10.054 17.323 1.00 58.76 ? 30 HOH A O 1 HETATM 184 O O . HOH B 2 . ? 2.625 6.240 12.326 1.00 61.97 ? 31 HOH A O 1 HETATM 185 O O . HOH B 2 . ? 3.312 9.139 5.556 1.00 54.15 ? 32 HOH A O 1 HETATM 186 O O . HOH B 2 . ? 9.196 9.138 7.351 1.00 36.97 ? 33 HOH A O 1 HETATM 187 O O . HOH B 2 . ? 7.120 9.550 4.824 1.00 50.26 ? 34 HOH A O 1 HETATM 188 O O . HOH B 2 . ? 13.280 6.094 5.610 1.00 49.75 ? 35 HOH A O 1 HETATM 189 O O . HOH B 2 . ? 2.467 5.830 16.299 1.00 57.04 ? 36 HOH A O 1 HETATM 190 O O . HOH B 2 . ? -1.252 15.986 5.791 1.00 50.67 ? 37 HOH A O 1 HETATM 191 O O . HOH B 2 . ? 1.598 8.141 10.802 1.00 62.40 ? 38 HOH A O 1 HETATM 192 O O . HOH B 2 . ? -4.041 8.028 7.451 1.00 58.38 ? 39 HOH A O 1 HETATM 193 O O . HOH B 2 . ? -0.743 3.105 16.325 1.00 58.80 ? 40 HOH A O 1 HETATM 194 O O . HOH B 2 . ? 6.896 8.044 12.629 0.50 53.22 ? 41 HOH A O 1 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG GUA A . n A 1 2 DT 2 2 2 DT THY A . n A 1 3 DG 3 3 3 DG GUA A . n A 1 4 BRU 4 4 4 BRU BRU A . n A 1 5 DA 5 5 5 DA ADE A . n A 1 6 DC 6 6 6 DC CYT A . n A 1 7 DA 7 7 7 DA ADE A . n A 1 8 DC 8 8 8 DC CYT A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 9 1 HOH HOH A . B 2 HOH 2 10 2 HOH HOH A . B 2 HOH 3 11 3 HOH HOH A . B 2 HOH 4 12 4 HOH HOH A . B 2 HOH 5 13 5 HOH HOH A . B 2 HOH 6 14 6 HOH HOH A . B 2 HOH 7 15 7 HOH HOH A . B 2 HOH 8 16 8 HOH HOH A . B 2 HOH 9 17 9 HOH HOH A . B 2 HOH 10 18 10 HOH HOH A . B 2 HOH 11 19 11 HOH HOH A . B 2 HOH 12 20 12 HOH HOH A . B 2 HOH 13 21 13 HOH HOH A . B 2 HOH 14 22 14 HOH HOH A . B 2 HOH 15 23 15 HOH HOH A . B 2 HOH 16 24 16 HOH HOH A . B 2 HOH 17 25 17 HOH HOH A . B 2 HOH 18 26 18 HOH HOH A . B 2 HOH 19 27 19 HOH HOH A . B 2 HOH 20 28 20 HOH HOH A . B 2 HOH 21 29 21 HOH HOH A . B 2 HOH 22 30 22 HOH HOH A . B 2 HOH 23 31 23 HOH HOH A . B 2 HOH 24 32 24 HOH HOH A . B 2 HOH 25 33 25 HOH HOH A . B 2 HOH 26 34 26 HOH HOH A . B 2 HOH 27 35 27 HOH HOH A . B 2 HOH 28 36 28 HOH HOH A . B 2 HOH 29 37 29 HOH HOH A . B 2 HOH 30 38 30 HOH HOH A . B 2 HOH 31 39 31 HOH HOH A . B 2 HOH 32 40 32 HOH HOH A . B 2 HOH 33 41 33 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id BRU _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id BRU _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id DU _pdbx_struct_mod_residue.details ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_556 y,x,-z+1 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 24.2700000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-05-23 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-30 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 CBASS 'data collection' . ? 2 HKL-2000 'data scaling' . ? 3 CNS phasing . ? 4 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DT 2 ? ? C6 A DT 2 ? ? 1.394 1.339 0.055 0.007 N 2 1 C5 A DC 6 ? ? C6 A DC 6 ? ? 1.399 1.339 0.060 0.008 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 100.06 108.00 -7.94 0.70 N 2 1 "O4'" A DT 2 ? ? "C1'" A DT 2 ? ? N1 A DT 2 ? ? 100.42 108.00 -7.58 0.70 N 3 1 "O4'" A DG 3 ? ? "C1'" A DG 3 ? ? N9 A DG 3 ? ? 100.27 108.00 -7.73 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal BRU N1 N N N 1 BRU C2 C N N 2 BRU N3 N N N 3 BRU C4 C N N 4 BRU C5 C N N 5 BRU C6 C N N 6 BRU O2 O N N 7 BRU O4 O N N 8 BRU BR BR N N 9 BRU "C1'" C N R 10 BRU "C2'" C N N 11 BRU "C3'" C N S 12 BRU "C4'" C N R 13 BRU "O3'" O N N 14 BRU "O4'" O N N 15 BRU "C5'" C N N 16 BRU "O5'" O N N 17 BRU P P N N 18 BRU OP1 O N N 19 BRU OP2 O N N 20 BRU OP3 O N N 21 BRU HN3 H N N 22 BRU H6 H N N 23 BRU "H1'" H N N 24 BRU "H2'" H N N 25 BRU "H2''" H N N 26 BRU "H3'" H N N 27 BRU "H4'" H N N 28 BRU "HO3'" H N N 29 BRU "H5'" H N N 30 BRU "H5''" H N N 31 BRU HOP2 H N N 32 BRU HOP3 H N N 33 DA OP3 O N N 34 DA P P N N 35 DA OP1 O N N 36 DA OP2 O N N 37 DA "O5'" O N N 38 DA "C5'" C N N 39 DA "C4'" C N R 40 DA "O4'" O N N 41 DA "C3'" C N S 42 DA "O3'" O N N 43 DA "C2'" C N N 44 DA "C1'" C N R 45 DA N9 N Y N 46 DA C8 C Y N 47 DA N7 N Y N 48 DA C5 C Y N 49 DA C6 C Y N 50 DA N6 N N N 51 DA N1 N Y N 52 DA C2 C Y N 53 DA N3 N Y N 54 DA C4 C Y N 55 DA HOP3 H N N 56 DA HOP2 H N N 57 DA "H5'" H N N 58 DA "H5''" H N N 59 DA "H4'" H N N 60 DA "H3'" H N N 61 DA "HO3'" H N N 62 DA "H2'" H N N 63 DA "H2''" H N N 64 DA "H1'" H N N 65 DA H8 H N N 66 DA H61 H N N 67 DA H62 H N N 68 DA H2 H N N 69 DC OP3 O N N 70 DC P P N N 71 DC OP1 O N N 72 DC OP2 O N N 73 DC "O5'" O N N 74 DC "C5'" C N N 75 DC "C4'" C N R 76 DC "O4'" O N N 77 DC "C3'" C N S 78 DC "O3'" O N N 79 DC "C2'" C N N 80 DC "C1'" C N R 81 DC N1 N N N 82 DC C2 C N N 83 DC O2 O N N 84 DC N3 N N N 85 DC C4 C N N 86 DC N4 N N N 87 DC C5 C N N 88 DC C6 C N N 89 DC HOP3 H N N 90 DC HOP2 H N N 91 DC "H5'" H N N 92 DC "H5''" H N N 93 DC "H4'" H N N 94 DC "H3'" H N N 95 DC "HO3'" H N N 96 DC "H2'" H N N 97 DC "H2''" H N N 98 DC "H1'" H N N 99 DC H41 H N N 100 DC H42 H N N 101 DC H5 H N N 102 DC H6 H N N 103 DG OP3 O N N 104 DG P P N N 105 DG OP1 O N N 106 DG OP2 O N N 107 DG "O5'" O N N 108 DG "C5'" C N N 109 DG "C4'" C N R 110 DG "O4'" O N N 111 DG "C3'" C N S 112 DG "O3'" O N N 113 DG "C2'" C N N 114 DG "C1'" C N R 115 DG N9 N Y N 116 DG C8 C Y N 117 DG N7 N Y N 118 DG C5 C Y N 119 DG C6 C N N 120 DG O6 O N N 121 DG N1 N N N 122 DG C2 C N N 123 DG N2 N N N 124 DG N3 N N N 125 DG C4 C Y N 126 DG HOP3 H N N 127 DG HOP2 H N N 128 DG "H5'" H N N 129 DG "H5''" H N N 130 DG "H4'" H N N 131 DG "H3'" H N N 132 DG "HO3'" H N N 133 DG "H2'" H N N 134 DG "H2''" H N N 135 DG "H1'" H N N 136 DG H8 H N N 137 DG H1 H N N 138 DG H21 H N N 139 DG H22 H N N 140 DT OP3 O N N 141 DT P P N N 142 DT OP1 O N N 143 DT OP2 O N N 144 DT "O5'" O N N 145 DT "C5'" C N N 146 DT "C4'" C N R 147 DT "O4'" O N N 148 DT "C3'" C N S 149 DT "O3'" O N N 150 DT "C2'" C N N 151 DT "C1'" C N R 152 DT N1 N N N 153 DT C2 C N N 154 DT O2 O N N 155 DT N3 N N N 156 DT C4 C N N 157 DT O4 O N N 158 DT C5 C N N 159 DT C7 C N N 160 DT C6 C N N 161 DT HOP3 H N N 162 DT HOP2 H N N 163 DT "H5'" H N N 164 DT "H5''" H N N 165 DT "H4'" H N N 166 DT "H3'" H N N 167 DT "HO3'" H N N 168 DT "H2'" H N N 169 DT "H2''" H N N 170 DT "H1'" H N N 171 DT H3 H N N 172 DT H71 H N N 173 DT H72 H N N 174 DT H73 H N N 175 DT H6 H N N 176 HOH O O N N 177 HOH H1 H N N 178 HOH H2 H N N 179 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal BRU N1 C2 sing N N 1 BRU N1 C6 sing N N 2 BRU N1 "C1'" sing N N 3 BRU C2 N3 sing N N 4 BRU C2 O2 doub N N 5 BRU N3 C4 sing N N 6 BRU N3 HN3 sing N N 7 BRU C4 C5 sing N N 8 BRU C4 O4 doub N N 9 BRU C5 C6 doub N N 10 BRU C5 BR sing N N 11 BRU C6 H6 sing N N 12 BRU "C1'" "C2'" sing N N 13 BRU "C1'" "O4'" sing N N 14 BRU "C1'" "H1'" sing N N 15 BRU "C2'" "C3'" sing N N 16 BRU "C2'" "H2'" sing N N 17 BRU "C2'" "H2''" sing N N 18 BRU "C3'" "C4'" sing N N 19 BRU "C3'" "O3'" sing N N 20 BRU "C3'" "H3'" sing N N 21 BRU "C4'" "O4'" sing N N 22 BRU "C4'" "C5'" sing N N 23 BRU "C4'" "H4'" sing N N 24 BRU "O3'" "HO3'" sing N N 25 BRU "C5'" "O5'" sing N N 26 BRU "C5'" "H5'" sing N N 27 BRU "C5'" "H5''" sing N N 28 BRU "O5'" P sing N N 29 BRU P OP1 doub N N 30 BRU P OP2 sing N N 31 BRU P OP3 sing N N 32 BRU OP2 HOP2 sing N N 33 BRU OP3 HOP3 sing N N 34 DA OP3 P sing N N 35 DA OP3 HOP3 sing N N 36 DA P OP1 doub N N 37 DA P OP2 sing N N 38 DA P "O5'" sing N N 39 DA OP2 HOP2 sing N N 40 DA "O5'" "C5'" sing N N 41 DA "C5'" "C4'" sing N N 42 DA "C5'" "H5'" sing N N 43 DA "C5'" "H5''" sing N N 44 DA "C4'" "O4'" sing N N 45 DA "C4'" "C3'" sing N N 46 DA "C4'" "H4'" sing N N 47 DA "O4'" "C1'" sing N N 48 DA "C3'" "O3'" sing N N 49 DA "C3'" "C2'" sing N N 50 DA "C3'" "H3'" sing N N 51 DA "O3'" "HO3'" sing N N 52 DA "C2'" "C1'" sing N N 53 DA "C2'" "H2'" sing N N 54 DA "C2'" "H2''" sing N N 55 DA "C1'" N9 sing N N 56 DA "C1'" "H1'" sing N N 57 DA N9 C8 sing Y N 58 DA N9 C4 sing Y N 59 DA C8 N7 doub Y N 60 DA C8 H8 sing N N 61 DA N7 C5 sing Y N 62 DA C5 C6 sing Y N 63 DA C5 C4 doub Y N 64 DA C6 N6 sing N N 65 DA C6 N1 doub Y N 66 DA N6 H61 sing N N 67 DA N6 H62 sing N N 68 DA N1 C2 sing Y N 69 DA C2 N3 doub Y N 70 DA C2 H2 sing N N 71 DA N3 C4 sing Y N 72 DC OP3 P sing N N 73 DC OP3 HOP3 sing N N 74 DC P OP1 doub N N 75 DC P OP2 sing N N 76 DC P "O5'" sing N N 77 DC OP2 HOP2 sing N N 78 DC "O5'" "C5'" sing N N 79 DC "C5'" "C4'" sing N N 80 DC "C5'" "H5'" sing N N 81 DC "C5'" "H5''" sing N N 82 DC "C4'" "O4'" sing N N 83 DC "C4'" "C3'" sing N N 84 DC "C4'" "H4'" sing N N 85 DC "O4'" "C1'" sing N N 86 DC "C3'" "O3'" sing N N 87 DC "C3'" "C2'" sing N N 88 DC "C3'" "H3'" sing N N 89 DC "O3'" "HO3'" sing N N 90 DC "C2'" "C1'" sing N N 91 DC "C2'" "H2'" sing N N 92 DC "C2'" "H2''" sing N N 93 DC "C1'" N1 sing N N 94 DC "C1'" "H1'" sing N N 95 DC N1 C2 sing N N 96 DC N1 C6 sing N N 97 DC C2 O2 doub N N 98 DC C2 N3 sing N N 99 DC N3 C4 doub N N 100 DC C4 N4 sing N N 101 DC C4 C5 sing N N 102 DC N4 H41 sing N N 103 DC N4 H42 sing N N 104 DC C5 C6 doub N N 105 DC C5 H5 sing N N 106 DC C6 H6 sing N N 107 DG OP3 P sing N N 108 DG OP3 HOP3 sing N N 109 DG P OP1 doub N N 110 DG P OP2 sing N N 111 DG P "O5'" sing N N 112 DG OP2 HOP2 sing N N 113 DG "O5'" "C5'" sing N N 114 DG "C5'" "C4'" sing N N 115 DG "C5'" "H5'" sing N N 116 DG "C5'" "H5''" sing N N 117 DG "C4'" "O4'" sing N N 118 DG "C4'" "C3'" sing N N 119 DG "C4'" "H4'" sing N N 120 DG "O4'" "C1'" sing N N 121 DG "C3'" "O3'" sing N N 122 DG "C3'" "C2'" sing N N 123 DG "C3'" "H3'" sing N N 124 DG "O3'" "HO3'" sing N N 125 DG "C2'" "C1'" sing N N 126 DG "C2'" "H2'" sing N N 127 DG "C2'" "H2''" sing N N 128 DG "C1'" N9 sing N N 129 DG "C1'" "H1'" sing N N 130 DG N9 C8 sing Y N 131 DG N9 C4 sing Y N 132 DG C8 N7 doub Y N 133 DG C8 H8 sing N N 134 DG N7 C5 sing Y N 135 DG C5 C6 sing N N 136 DG C5 C4 doub Y N 137 DG C6 O6 doub N N 138 DG C6 N1 sing N N 139 DG N1 C2 sing N N 140 DG N1 H1 sing N N 141 DG C2 N2 sing N N 142 DG C2 N3 doub N N 143 DG N2 H21 sing N N 144 DG N2 H22 sing N N 145 DG N3 C4 sing N N 146 DT OP3 P sing N N 147 DT OP3 HOP3 sing N N 148 DT P OP1 doub N N 149 DT P OP2 sing N N 150 DT P "O5'" sing N N 151 DT OP2 HOP2 sing N N 152 DT "O5'" "C5'" sing N N 153 DT "C5'" "C4'" sing N N 154 DT "C5'" "H5'" sing N N 155 DT "C5'" "H5''" sing N N 156 DT "C4'" "O4'" sing N N 157 DT "C4'" "C3'" sing N N 158 DT "C4'" "H4'" sing N N 159 DT "O4'" "C1'" sing N N 160 DT "C3'" "O3'" sing N N 161 DT "C3'" "C2'" sing N N 162 DT "C3'" "H3'" sing N N 163 DT "O3'" "HO3'" sing N N 164 DT "C2'" "C1'" sing N N 165 DT "C2'" "H2'" sing N N 166 DT "C2'" "H2''" sing N N 167 DT "C1'" N1 sing N N 168 DT "C1'" "H1'" sing N N 169 DT N1 C2 sing N N 170 DT N1 C6 sing N N 171 DT C2 O2 doub N N 172 DT C2 N3 sing N N 173 DT N3 C4 sing N N 174 DT N3 H3 sing N N 175 DT C4 O4 doub N N 176 DT C4 C5 sing N N 177 DT C5 C7 sing N N 178 DT C5 C6 doub N N 179 DT C7 H71 sing N N 180 DT C7 H72 sing N N 181 DT C7 H73 sing N N 182 DT C6 H6 sing N N 183 HOH O H1 sing N N 184 HOH O H2 sing N N 185 # _ndb_struct_conf_na.entry_id 2H05 _ndb_struct_conf_na.feature 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 A DC 8 7_556 -0.260 -0.148 -0.177 -15.589 -8.929 -3.969 1 A_DG1:DC8_A A 1 ? A 8 ? 19 1 1 A DT 2 1_555 A DA 7 7_556 0.043 -0.145 -0.006 -2.194 -8.738 3.849 2 A_DT2:DA7_A A 2 ? A 7 ? 20 1 1 A DG 3 1_555 A DC 6 7_556 -0.281 -0.181 0.103 -7.436 -13.928 3.349 3 A_DG3:DC6_A A 3 ? A 6 ? 19 1 1 A BRU 4 1_555 A DA 5 7_556 0.057 -0.094 0.314 -2.498 -9.630 -3.112 4 A_BRU4:DA5_A A 4 ? A 5 ? 20 1 1 A DA 5 1_555 A BRU 4 7_556 -0.057 -0.094 0.314 2.498 -9.630 -3.112 5 A_DA5:BRU4_A A 5 ? A 4 ? 20 1 1 A DC 6 1_555 A DG 3 7_556 0.281 -0.181 0.103 7.436 -13.928 3.349 6 A_DC6:DG3_A A 6 ? A 3 ? 19 1 1 A DA 7 1_555 A DT 2 7_556 -0.043 -0.145 -0.006 2.194 -8.738 3.849 7 A_DA7:DT2_A A 7 ? A 2 ? 20 1 1 A DC 8 1_555 A DG 1 7_556 0.260 -0.148 -0.177 15.589 -8.929 -3.969 8 A_DC8:DG1_A A 8 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 A DC 8 7_556 A DT 2 1_555 A DA 7 7_556 0.458 -1.202 3.063 -0.227 11.328 30.725 -3.847 -0.848 2.473 20.523 0.411 32.700 1 AA_DG1DT2:DA7DC8_AA A 1 ? A 8 ? A 2 ? A 7 ? 1 A DT 2 1_555 A DA 7 7_556 A DG 3 1_555 A DC 6 7_556 0.326 -1.431 3.329 -0.183 8.569 30.127 -4.206 -0.638 2.823 16.080 0.343 31.295 2 AA_DT2DG3:DC6DA7_AA A 2 ? A 7 ? A 3 ? A 6 ? 1 A DG 3 1_555 A DC 6 7_556 A BRU 4 1_555 A DA 5 7_556 -0.456 -1.442 3.094 -0.781 3.887 36.448 -2.785 0.626 2.939 6.192 1.244 36.656 3 AA_DG3BRU4:DA5DC6_AA A 3 ? A 6 ? A 4 ? A 5 ? 1 A BRU 4 1_555 A DA 5 7_556 A DA 5 1_555 A BRU 4 7_556 0.000 -1.416 3.005 0.000 4.816 28.445 -3.791 0.000 2.734 9.712 0.000 28.841 4 AA_BRU4DA5:BRU4DA5_AA A 4 ? A 5 ? A 5 ? A 4 ? 1 A DA 5 1_555 A BRU 4 7_556 A DC 6 1_555 A DG 3 7_556 0.456 -1.442 3.094 0.781 3.887 36.448 -2.785 -0.626 2.939 6.192 -1.244 36.656 5 AA_DA5DC6:DG3BRU4_AA A 5 ? A 4 ? A 6 ? A 3 ? 1 A DC 6 1_555 A DG 3 7_556 A DA 7 1_555 A DT 2 7_556 -0.326 -1.431 3.329 0.183 8.569 30.127 -4.206 0.638 2.823 16.080 -0.343 31.295 6 AA_DC6DA7:DT2DG3_AA A 6 ? A 3 ? A 7 ? A 2 ? 1 A DA 7 1_555 A DT 2 7_556 A DC 8 1_555 A DG 1 7_556 -0.458 -1.202 3.063 0.227 11.328 30.725 -3.847 0.848 2.473 20.523 -0.411 32.700 7 AA_DA7DC8:DG1DT2_AA A 7 ? A 2 ? A 8 ? A 1 ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1Z7I _pdbx_initial_refinement_model.details 'pdb entry 1Z7I' #