0.00984 0.00568 0.00000 0.00000 0.01136 0.00000 0.00000 0.00000 0.02587 0.00000 0.00000 0.00000 Gavira, J.A. Godoy-Ruiz, R. Ibarra-Molero, B. Sanchez-Ruiz, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120 101.608 101.608 38.658 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N O N 253 N C N 254 N C N 255 S C N 256 N O N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing To be Published 0353 Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group UK J.Mol.Biol. JMOBAK 0070 0022-2836 336 313 318 Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations. 2004 10.2210/pdb2h6y/pdb pdb_00002h6y 100 1 Montel Optics CCD 2005-12-20 BRUKER SMART 6000 Ni filter SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE OTHER 11673.361 Thioredoxin E48D 2 man polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 2 syn non-polymer 18.015 water 88 nat water no no SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample trxA 562 Escherichia coli 562 Escherichia coli JF521 plasmid pTk100 1 2.37 48.15 COUNTER-DIFFUSION 3.5 60% (v/v) MPD, AcNa 15 mM pH 3.5, 1 mM Ac2Cu, Counter-diffusion, temperature 277K 277 software database_2 exptl_crystal_grow struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Advisory Version format compliance Other Refinement description Database references Derived calculations Experimental preparation Data collection Refinement description 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 1 3 2012-05-09 1 4 2017-10-18 1 5 2021-10-20 1 6 2024-04-03 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _exptl_crystal_grow.method _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-06-01 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 2TRX 2TRX_A PDB experimental model MPD 501 2 MPD MPD 501 A MPD 502 2 MPD MPD 502 A HOH 1 3 HOH HOH 503 A HOH 3 3 HOH HOH 504 A HOH 5 3 HOH HOH 505 A HOH 6 3 HOH HOH 506 A HOH 7 3 HOH HOH 507 A HOH 9 3 HOH HOH 508 A HOH 11 3 HOH HOH 509 A HOH 16 3 HOH HOH 510 A HOH 17 3 HOH HOH 511 A HOH 18 3 HOH HOH 512 A HOH 21 3 HOH HOH 513 A HOH 22 3 HOH HOH 514 A HOH 23 3 HOH HOH 515 A HOH 25 3 HOH HOH 516 A HOH 26 3 HOH HOH 517 A HOH 27 3 HOH HOH 518 A HOH 28 3 HOH HOH 519 A HOH 29 3 HOH HOH 520 A HOH 30 3 HOH HOH 521 A HOH 31 3 HOH HOH 522 A HOH 32 3 HOH HOH 523 A HOH 34 3 HOH HOH 524 A HOH 35 3 HOH HOH 525 A HOH 36 3 HOH HOH 526 A HOH 40 3 HOH HOH 527 A HOH 42 3 HOH HOH 528 A HOH 44 3 HOH HOH 529 A HOH 45 3 HOH HOH 530 A HOH 47 3 HOH HOH 531 A HOH 51 3 HOH HOH 532 A HOH 53 3 HOH HOH 533 A HOH 54 3 HOH HOH 534 A HOH 56 3 HOH HOH 535 A HOH 57 3 HOH HOH 536 A HOH 58 3 HOH HOH 537 A HOH 59 3 HOH HOH 538 A HOH 60 3 HOH HOH 539 A HOH 61 3 HOH HOH 540 A HOH 62 3 HOH HOH 541 A HOH 63 3 HOH HOH 542 A HOH 65 3 HOH HOH 543 A HOH 66 3 HOH HOH 544 A HOH 68 3 HOH HOH 545 A HOH 69 3 HOH HOH 546 A HOH 70 3 HOH HOH 547 A HOH 73 3 HOH HOH 548 A HOH 74 3 HOH HOH 549 A HOH 77 3 HOH HOH 550 A HOH 78 3 HOH HOH 551 A HOH 79 3 HOH HOH 552 A HOH 81 3 HOH HOH 553 A HOH 83 3 HOH HOH 554 A HOH 84 3 HOH HOH 555 A HOH 87 3 HOH HOH 556 A HOH 2 3 HOH HOH 109 B HOH 4 3 HOH HOH 110 B HOH 8 3 HOH HOH 111 B HOH 10 3 HOH HOH 112 B HOH 12 3 HOH HOH 113 B HOH 13 3 HOH HOH 114 B HOH 14 3 HOH HOH 115 B HOH 15 3 HOH HOH 116 B HOH 19 3 HOH HOH 117 B HOH 20 3 HOH HOH 118 B HOH 24 3 HOH HOH 119 B HOH 33 3 HOH HOH 120 B HOH 37 3 HOH HOH 121 B HOH 39 3 HOH HOH 122 B HOH 41 3 HOH HOH 123 B HOH 43 3 HOH HOH 124 B HOH 48 3 HOH HOH 125 B HOH 49 3 HOH HOH 126 B HOH 50 3 HOH HOH 127 B HOH 52 3 HOH HOH 128 B HOH 55 3 HOH HOH 129 B HOH 64 3 HOH HOH 130 B HOH 67 3 HOH HOH 131 B HOH 71 3 HOH HOH 132 B HOH 72 3 HOH HOH 133 B HOH 75 3 HOH HOH 134 B HOH 76 3 HOH HOH 135 B HOH 80 3 HOH HOH 136 B HOH 82 3 HOH HOH 137 B HOH 85 3 HOH HOH 138 B HOH 86 3 HOH HOH 139 B HOH 88 3 HOH HOH 140 B HOH 89 3 HOH HOH 141 B HOH 90 3 HOH HOH 142 B n 1 1 A ASP 2 n 2 ASP 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A HIS 6 n 6 HIS 6 A LEU 7 n 7 LEU 7 A THR 8 n 8 THR 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A PHE 27 n 27 PHE 27 A TRP 28 n 28 TRP 28 A ALA 29 n 29 ALA 29 A GLU 30 n 30 GLU 30 A TRP 31 n 31 TRP 31 A CYS 32 n 32 CYS 32 A GLY 33 n 33 GLY 33 A PRO 34 n 34 PRO 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A MET 37 n 37 MET 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A PRO 40 n 40 PRO 40 A ILE 41 n 41 ILE 41 A LEU 42 n 42 LEU 42 A ASP 43 n 43 ASP 43 A GLU 44 n 44 GLU 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A ASP 48 n 48 ASP 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLN 62 n 62 GLN 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A ASN 83 n 83 ASN 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A ASN 106 n 106 ASN 106 A LEU 107 n 107 LEU 107 A ALA 108 n 108 ALA 108 A n 1 1 B ASP 2 n 2 ASP 2 B LYS 3 n 3 LYS 3 B ILE 4 n 4 ILE 4 B ILE 5 n 5 ILE 5 B HIS 6 n 6 HIS 6 B LEU 7 n 7 LEU 7 B THR 8 n 8 THR 8 B ASP 9 n 9 ASP 9 B ASP 10 n 10 ASP 10 B SER 11 n 11 SER 11 B PHE 12 n 12 PHE 12 B ASP 13 n 13 ASP 13 B THR 14 n 14 THR 14 B ASP 15 n 15 ASP 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B LYS 18 n 18 LYS 18 B ALA 19 n 19 ALA 19 B ASP 20 n 20 ASP 20 B GLY 21 n 21 GLY 21 B ALA 22 n 22 ALA 22 B ILE 23 n 23 ILE 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B ASP 26 n 26 ASP 26 B PHE 27 n 27 PHE 27 B TRP 28 n 28 TRP 28 B ALA 29 n 29 ALA 29 B GLU 30 n 30 GLU 30 B TRP 31 n 31 TRP 31 B CYS 32 n 32 CYS 32 B GLY 33 n 33 GLY 33 B PRO 34 n 34 PRO 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B MET 37 n 37 MET 37 B ILE 38 n 38 ILE 38 B ALA 39 n 39 ALA 39 B PRO 40 n 40 PRO 40 B ILE 41 n 41 ILE 41 B LEU 42 n 42 LEU 42 B ASP 43 n 43 ASP 43 B GLU 44 n 44 GLU 44 B ILE 45 n 45 ILE 45 B ALA 46 n 46 ALA 46 B ASP 47 n 47 ASP 47 B ASP 48 n 48 ASP 48 B TYR 49 n 49 TYR 49 B GLN 50 n 50 GLN 50 B GLY 51 n 51 GLY 51 B LYS 52 n 52 LYS 52 B LEU 53 n 53 LEU 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B ALA 56 n 56 ALA 56 B LYS 57 n 57 LYS 57 B LEU 58 n 58 LEU 58 B ASN 59 n 59 ASN 59 B ILE 60 n 60 ILE 60 B ASP 61 n 61 ASP 61 B GLN 62 n 62 GLN 62 B ASN 63 n 63 ASN 63 B PRO 64 n 64 PRO 64 B GLY 65 n 65 GLY 65 B THR 66 n 66 THR 66 B ALA 67 n 67 ALA 67 B PRO 68 n 68 PRO 68 B LYS 69 n 69 LYS 69 B TYR 70 n 70 TYR 70 B GLY 71 n 71 GLY 71 B ILE 72 n 72 ILE 72 B ARG 73 n 73 ARG 73 B GLY 74 n 74 GLY 74 B ILE 75 n 75 ILE 75 B PRO 76 n 76 PRO 76 B THR 77 n 77 THR 77 B LEU 78 n 78 LEU 78 B LEU 79 n 79 LEU 79 B LEU 80 n 80 LEU 80 B PHE 81 n 81 PHE 81 B LYS 82 n 82 LYS 82 B ASN 83 n 83 ASN 83 B GLY 84 n 84 GLY 84 B GLU 85 n 85 GLU 85 B VAL 86 n 86 VAL 86 B ALA 87 n 87 ALA 87 B ALA 88 n 88 ALA 88 B THR 89 n 89 THR 89 B LYS 90 n 90 LYS 90 B VAL 91 n 91 VAL 91 B GLY 92 n 92 GLY 92 B ALA 93 n 93 ALA 93 B LEU 94 n 94 LEU 94 B SER 95 n 95 SER 95 B LYS 96 n 96 LYS 96 B GLY 97 n 97 GLY 97 B GLN 98 n 98 GLN 98 B LEU 99 n 99 LEU 99 B LYS 100 n 100 LYS 100 B GLU 101 n 101 GLU 101 B PHE 102 n 102 PHE 102 B LEU 103 n 103 LEU 103 B ASP 104 n 104 ASP 104 B ALA 105 n 105 ALA 105 B ASN 106 n 106 ASN 106 B LEU 107 n 107 LEU 107 B ALA 108 n 108 ALA 108 B 2.8275 -1.1784 0.2307 1.9341 -0.1105 0.4746 -0.0249 -0.0145 0.1356 0.0069 0.0253 0.0126 -0.1042 -0.0670 -0.0003 -0.0641 -0.0107 -0.0035 -0.1030 0.0055 -0.0982 refined -4.1340 37.1090 18.2900 X-RAY DIFFRACTION A 2 A 2 A 108 A 108 X-RAY DIFFRACTION 1 ALL B 2 B 2 B 108 B 108 X-RAY DIFFRACTION 1 ALL author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 5 A N ILE 5 A O LYS 57 A O LYS 57 A O LEU 58 A O LEU 58 A N ASP 26 A N ASP 26 A N ILE 23 A N ILE 23 A O PHE 81 A O PHE 81 A N LEU 78 A N LEU 78 A O LYS 90 A O LYS 90 B N ILE 5 B N ILE 5 B O LYS 57 B O LYS 57 B O ALA 56 B O ALA 56 B N LEU 24 B N LEU 24 B N VAL 25 B N VAL 25 B O LEU 79 B O LEU 79 B N LYS 82 B N LYS 82 B O GLU 85 B O GLU 85 1 B NE ARG 73 B NE ARG 73 1 Y 1 B CZ ARG 73 B CZ ARG 73 1 Y 1 B NH1 ARG 73 B NH1 ARG 73 1 Y 1 B NH2 ARG 73 B NH2 ARG 73 1 Y 1 B CD LYS 90 B CD LYS 90 1 Y 1 B CE LYS 90 B CE LYS 90 1 Y 1 B NZ LYS 90 B NZ LYS 90 1 Y 1 A SER 1 A SER 1 1 Y 1 B SER 1 B SER 1 1 Y 1 A C4 MPD 501 WRONG HAND 1 14.19 2.30 115.30 129.49 A A A CA CB CG LEU LEU LEU 53 53 53 N 1 A ARG 73 -112.17 -82.14 23.717 -1.442 -0.721 0.000 -1.442 0.000 2.163 0.934 0.889 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2295 0.1864 0.188 0.188 2.400 50.800 408 9093 8566 4.763 93.915 0.214 0.174 15.511 0.189 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.607 0.267 0.800 0.800 1.400 2TRX_A MAXIMUM LIKELIHOOD MASK BULK SOLVENT 2.400 50.800 88 1726 16 0 1622 0.008 0.022 1728 1.228 1.991 2360 5.665 5.000 228 34.261 26.957 69 15.116 15.000 302 17.320 15.000 1 0.072 0.200 273 0.003 0.020 1279 0.195 0.200 742 0.300 0.200 1165 0.119 0.200 99 0.226 0.200 28 0.172 0.200 11 0.369 1.500 1118 0.665 2.000 1759 0.897 3.000 686 1.478 4.500 595 0.297 0.232 0.236 2.462 24 497 662 20 78.701 0.29 0.205 0.208 2.530 22 521 642 20 84.579 0.326 0.226 0.231 2.603 27 529 637 20 87.284 0.21 0.199 0.199 2.683 23 525 595 20 92.101 0.338 0.21 0.217 2.770 26 532 606 20 92.079 0.334 0.22 0.226 2.867 25 529 578 20 95.848 0.234 0.208 0.210 2.975 25 510 561 20 95.365 0.27 0.196 0.201 3.096 29 490 534 20 97.191 0.204 0.176 0.178 3.233 23 483 516 20 98.062 0.236 0.179 0.182 3.390 29 458 496 20 98.185 0.238 0.171 0.175 3.573 26 429 466 20 97.639 0.174 0.169 0.169 3.789 16 424 447 20 98.434 0.153 0.157 0.156 4.049 19 400 423 20 99.054 0.215 0.146 0.149 4.371 22 367 394 20 98.731 0.179 0.152 0.153 4.784 14 343 360 20 99.167 0.245 0.172 0.175 5.343 12 321 336 20 99.107 0.176 0.196 0.195 6.158 17 272 289 20 100.000 0.215 0.229 0.229 7.515 10 249 259 20 100.000 0.172 0.167 0.167 10.513 12 183 195 20 100.000 0.19 0.299 0.290 50.800 7 96 125 20 82.400 35.742 2.40 50.80 2H6Y 9093 9093 0.048 1 18.96 10.25 99.5 2.40 2.45 3.45 492 0.3529 1 2.90 93.4 data scaling http://www.bruker-axs.de/index.html SAINT package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Murshudov, G.N. ccp4@dl.ac.uk 24/04/2001 Fortran http://www.ccp4.ac.uk/main.html REFMAC program refmac_5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu July 20, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 data reduction PROTEUM PLUS 2 data scaling SADABS data reduction XPREP model building Coot model building MolProbity Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A SER 11 A SER 11 HELX_P A VAL 16 A VAL 16 1 1 6 A CYS 32 A CYS 32 HELX_P A TYR 49 A TYR 49 1 2 18 A THR 66 A THR 66 HELX_P A GLY 71 A GLY 71 5 3 6 A SER 95 A SER 95 HELX_P A ALA 108 A ALA 108 1 4 14 B SER 11 B SER 11 HELX_P B VAL 16 B VAL 16 1 5 6 B CYS 32 B CYS 32 HELX_P B TYR 49 B TYR 49 1 6 18 B GLY 65 B GLY 65 HELX_P B TYR 70 B TYR 70 1 7 6 B SER 95 B SER 95 HELX_P B LEU 107 B LEU 107 1 8 13 disulf 2.045 A CYS 32 A SG CYS 32 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.053 B CYS 32 B SG CYS 32 1_555 B CYS 35 B SG CYS 35 1_555 ELECTRON TRANSPORT Alpha Beta, Electron transport A ILE 75 A ILE 75 1 A PRO 76 A PRO 76 -1.04 B ILE 75 B ILE 75 1 B PRO 76 B PRO 76 5.69 Q2M889_ECOLI UNP 1 2 Q2M889 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA 2 109 2H6Y 1 108 Q2M889 A 1 1 108 2 109 2H6Y 1 108 Q2M889 B 1 1 108 1 GLU engineered mutation ASP 48 2H6Y A Q2M889 UNP 49 48 2 GLU engineered mutation ASP 48 2H6Y B Q2M889 UNP 49 48 5 5 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A ILE 5 A ILE 5 A HIS 6 A HIS 6 A THR 54 A THR 54 A ASN 59 A ASN 59 A ALA 22 A ALA 22 A TRP 28 A TRP 28 A THR 77 A THR 77 A LYS 82 A LYS 82 A GLU 85 A GLU 85 A VAL 91 A VAL 91 B ILE 5 B ILE 5 B HIS 6 B HIS 6 B THR 54 B THR 54 B ASN 59 B ASN 59 B ALA 22 B ALA 22 B TRP 28 B TRP 28 B THR 77 B THR 77 B LYS 82 B LYS 82 B GLU 85 B GLU 85 B VAL 86 B VAL 86 BINDING SITE FOR RESIDUE MPD A 501 A MPD 501 Software 2 BINDING SITE FOR RESIDUE MPD A 502 A MPD 502 Software 8 A ARG 73 A ARG 73 2 1_555 A HOH 554 E HOH 2 1_555 A ASP 20 A ASP 20 8 1_555 A GLY 21 A GLY 21 8 1_555 A ALA 22 A ALA 22 8 1_555 A GLY 51 A GLY 51 8 1_555 A LYS 52 A LYS 52 8 1_555 A LEU 53 A LEU 53 8 1_555 A THR 54 A THR 54 8 1_555 A HOH 508 E HOH 8 1_555 169 P 61