0.00984
0.00568
0.00000
0.00000
0.01136
0.00000
0.00000
0.00000
0.02587
0.00000
0.00000
0.00000
Gavira, J.A.
Godoy-Ruiz, R.
Ibarra-Molero, B.
Sanchez-Ruiz, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120
101.608
101.608
38.658
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
To be Published
0353
Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
336
313
318
Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations.
2004
10.2210/pdb2h6y/pdb
pdb_00002h6y
100
1
Montel Optics
CCD
2005-12-20
BRUKER SMART 6000
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
OTHER
11673.361
Thioredoxin
E48D
2
man
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
88
nat
water
no
no
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADDYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
trxA
562
Escherichia coli
562
Escherichia coli
JF521
plasmid
pTk100
1
2.37
48.15
COUNTER-DIFFUSION
3.5
60% (v/v) MPD, AcNa 15 mM pH 3.5, 1 mM Ac2Cu, Counter-diffusion, temperature 277K
277
software
database_2
exptl_crystal_grow
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Advisory
Version format compliance
Other
Refinement description
Database references
Derived calculations
Experimental preparation
Data collection
Refinement description
1
0
2007-05-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2012-05-09
1
4
2017-10-18
1
5
2021-10-20
1
6
2024-04-03
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_exptl_crystal_grow.method
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-06-01
REL
REL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
2TRX
2TRX_A
PDB
experimental model
MPD
501
2
MPD
MPD
501
A
MPD
502
2
MPD
MPD
502
A
HOH
1
3
HOH
HOH
503
A
HOH
3
3
HOH
HOH
504
A
HOH
5
3
HOH
HOH
505
A
HOH
6
3
HOH
HOH
506
A
HOH
7
3
HOH
HOH
507
A
HOH
9
3
HOH
HOH
508
A
HOH
11
3
HOH
HOH
509
A
HOH
16
3
HOH
HOH
510
A
HOH
17
3
HOH
HOH
511
A
HOH
18
3
HOH
HOH
512
A
HOH
21
3
HOH
HOH
513
A
HOH
22
3
HOH
HOH
514
A
HOH
23
3
HOH
HOH
515
A
HOH
25
3
HOH
HOH
516
A
HOH
26
3
HOH
HOH
517
A
HOH
27
3
HOH
HOH
518
A
HOH
28
3
HOH
HOH
519
A
HOH
29
3
HOH
HOH
520
A
HOH
30
3
HOH
HOH
521
A
HOH
31
3
HOH
HOH
522
A
HOH
32
3
HOH
HOH
523
A
HOH
34
3
HOH
HOH
524
A
HOH
35
3
HOH
HOH
525
A
HOH
36
3
HOH
HOH
526
A
HOH
40
3
HOH
HOH
527
A
HOH
42
3
HOH
HOH
528
A
HOH
44
3
HOH
HOH
529
A
HOH
45
3
HOH
HOH
530
A
HOH
47
3
HOH
HOH
531
A
HOH
51
3
HOH
HOH
532
A
HOH
53
3
HOH
HOH
533
A
HOH
54
3
HOH
HOH
534
A
HOH
56
3
HOH
HOH
535
A
HOH
57
3
HOH
HOH
536
A
HOH
58
3
HOH
HOH
537
A
HOH
59
3
HOH
HOH
538
A
HOH
60
3
HOH
HOH
539
A
HOH
61
3
HOH
HOH
540
A
HOH
62
3
HOH
HOH
541
A
HOH
63
3
HOH
HOH
542
A
HOH
65
3
HOH
HOH
543
A
HOH
66
3
HOH
HOH
544
A
HOH
68
3
HOH
HOH
545
A
HOH
69
3
HOH
HOH
546
A
HOH
70
3
HOH
HOH
547
A
HOH
73
3
HOH
HOH
548
A
HOH
74
3
HOH
HOH
549
A
HOH
77
3
HOH
HOH
550
A
HOH
78
3
HOH
HOH
551
A
HOH
79
3
HOH
HOH
552
A
HOH
81
3
HOH
HOH
553
A
HOH
83
3
HOH
HOH
554
A
HOH
84
3
HOH
HOH
555
A
HOH
87
3
HOH
HOH
556
A
HOH
2
3
HOH
HOH
109
B
HOH
4
3
HOH
HOH
110
B
HOH
8
3
HOH
HOH
111
B
HOH
10
3
HOH
HOH
112
B
HOH
12
3
HOH
HOH
113
B
HOH
13
3
HOH
HOH
114
B
HOH
14
3
HOH
HOH
115
B
HOH
15
3
HOH
HOH
116
B
HOH
19
3
HOH
HOH
117
B
HOH
20
3
HOH
HOH
118
B
HOH
24
3
HOH
HOH
119
B
HOH
33
3
HOH
HOH
120
B
HOH
37
3
HOH
HOH
121
B
HOH
39
3
HOH
HOH
122
B
HOH
41
3
HOH
HOH
123
B
HOH
43
3
HOH
HOH
124
B
HOH
48
3
HOH
HOH
125
B
HOH
49
3
HOH
HOH
126
B
HOH
50
3
HOH
HOH
127
B
HOH
52
3
HOH
HOH
128
B
HOH
55
3
HOH
HOH
129
B
HOH
64
3
HOH
HOH
130
B
HOH
67
3
HOH
HOH
131
B
HOH
71
3
HOH
HOH
132
B
HOH
72
3
HOH
HOH
133
B
HOH
75
3
HOH
HOH
134
B
HOH
76
3
HOH
HOH
135
B
HOH
80
3
HOH
HOH
136
B
HOH
82
3
HOH
HOH
137
B
HOH
85
3
HOH
HOH
138
B
HOH
86
3
HOH
HOH
139
B
HOH
88
3
HOH
HOH
140
B
HOH
89
3
HOH
HOH
141
B
HOH
90
3
HOH
HOH
142
B
n
1
1
A
ASP
2
n
2
ASP
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
HIS
6
n
6
HIS
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
ASP
13
n
13
ASP
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
TRP
28
n
28
TRP
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
TRP
31
n
31
TRP
31
A
CYS
32
n
32
CYS
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
CYS
35
n
35
CYS
35
A
LYS
36
n
36
LYS
36
A
MET
37
n
37
MET
37
A
ILE
38
n
38
ILE
38
A
ALA
39
n
39
ALA
39
A
PRO
40
n
40
PRO
40
A
ILE
41
n
41
ILE
41
A
LEU
42
n
42
LEU
42
A
ASP
43
n
43
ASP
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
ASP
48
n
48
ASP
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLN
62
n
62
GLN
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
GLY
74
n
74
GLY
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
THR
77
n
77
THR
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
ASN
83
n
83
ASN
83
A
GLY
84
n
84
GLY
84
A
GLU
85
n
85
GLU
85
A
VAL
86
n
86
VAL
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
THR
89
n
89
THR
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
LYS
96
n
96
LYS
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
GLU
101
n
101
GLU
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
ASP
104
n
104
ASP
104
A
ALA
105
n
105
ALA
105
A
ASN
106
n
106
ASN
106
A
LEU
107
n
107
LEU
107
A
ALA
108
n
108
ALA
108
A
n
1
1
B
ASP
2
n
2
ASP
2
B
LYS
3
n
3
LYS
3
B
ILE
4
n
4
ILE
4
B
ILE
5
n
5
ILE
5
B
HIS
6
n
6
HIS
6
B
LEU
7
n
7
LEU
7
B
THR
8
n
8
THR
8
B
ASP
9
n
9
ASP
9
B
ASP
10
n
10
ASP
10
B
SER
11
n
11
SER
11
B
PHE
12
n
12
PHE
12
B
ASP
13
n
13
ASP
13
B
THR
14
n
14
THR
14
B
ASP
15
n
15
ASP
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
LYS
18
n
18
LYS
18
B
ALA
19
n
19
ALA
19
B
ASP
20
n
20
ASP
20
B
GLY
21
n
21
GLY
21
B
ALA
22
n
22
ALA
22
B
ILE
23
n
23
ILE
23
B
LEU
24
n
24
LEU
24
B
VAL
25
n
25
VAL
25
B
ASP
26
n
26
ASP
26
B
PHE
27
n
27
PHE
27
B
TRP
28
n
28
TRP
28
B
ALA
29
n
29
ALA
29
B
GLU
30
n
30
GLU
30
B
TRP
31
n
31
TRP
31
B
CYS
32
n
32
CYS
32
B
GLY
33
n
33
GLY
33
B
PRO
34
n
34
PRO
34
B
CYS
35
n
35
CYS
35
B
LYS
36
n
36
LYS
36
B
MET
37
n
37
MET
37
B
ILE
38
n
38
ILE
38
B
ALA
39
n
39
ALA
39
B
PRO
40
n
40
PRO
40
B
ILE
41
n
41
ILE
41
B
LEU
42
n
42
LEU
42
B
ASP
43
n
43
ASP
43
B
GLU
44
n
44
GLU
44
B
ILE
45
n
45
ILE
45
B
ALA
46
n
46
ALA
46
B
ASP
47
n
47
ASP
47
B
ASP
48
n
48
ASP
48
B
TYR
49
n
49
TYR
49
B
GLN
50
n
50
GLN
50
B
GLY
51
n
51
GLY
51
B
LYS
52
n
52
LYS
52
B
LEU
53
n
53
LEU
53
B
THR
54
n
54
THR
54
B
VAL
55
n
55
VAL
55
B
ALA
56
n
56
ALA
56
B
LYS
57
n
57
LYS
57
B
LEU
58
n
58
LEU
58
B
ASN
59
n
59
ASN
59
B
ILE
60
n
60
ILE
60
B
ASP
61
n
61
ASP
61
B
GLN
62
n
62
GLN
62
B
ASN
63
n
63
ASN
63
B
PRO
64
n
64
PRO
64
B
GLY
65
n
65
GLY
65
B
THR
66
n
66
THR
66
B
ALA
67
n
67
ALA
67
B
PRO
68
n
68
PRO
68
B
LYS
69
n
69
LYS
69
B
TYR
70
n
70
TYR
70
B
GLY
71
n
71
GLY
71
B
ILE
72
n
72
ILE
72
B
ARG
73
n
73
ARG
73
B
GLY
74
n
74
GLY
74
B
ILE
75
n
75
ILE
75
B
PRO
76
n
76
PRO
76
B
THR
77
n
77
THR
77
B
LEU
78
n
78
LEU
78
B
LEU
79
n
79
LEU
79
B
LEU
80
n
80
LEU
80
B
PHE
81
n
81
PHE
81
B
LYS
82
n
82
LYS
82
B
ASN
83
n
83
ASN
83
B
GLY
84
n
84
GLY
84
B
GLU
85
n
85
GLU
85
B
VAL
86
n
86
VAL
86
B
ALA
87
n
87
ALA
87
B
ALA
88
n
88
ALA
88
B
THR
89
n
89
THR
89
B
LYS
90
n
90
LYS
90
B
VAL
91
n
91
VAL
91
B
GLY
92
n
92
GLY
92
B
ALA
93
n
93
ALA
93
B
LEU
94
n
94
LEU
94
B
SER
95
n
95
SER
95
B
LYS
96
n
96
LYS
96
B
GLY
97
n
97
GLY
97
B
GLN
98
n
98
GLN
98
B
LEU
99
n
99
LEU
99
B
LYS
100
n
100
LYS
100
B
GLU
101
n
101
GLU
101
B
PHE
102
n
102
PHE
102
B
LEU
103
n
103
LEU
103
B
ASP
104
n
104
ASP
104
B
ALA
105
n
105
ALA
105
B
ASN
106
n
106
ASN
106
B
LEU
107
n
107
LEU
107
B
ALA
108
n
108
ALA
108
B
2.8275
-1.1784
0.2307
1.9341
-0.1105
0.4746
-0.0249
-0.0145
0.1356
0.0069
0.0253
0.0126
-0.1042
-0.0670
-0.0003
-0.0641
-0.0107
-0.0035
-0.1030
0.0055
-0.0982
refined
-4.1340
37.1090
18.2900
X-RAY DIFFRACTION
A
2
A
2
A
108
A
108
X-RAY DIFFRACTION
1
ALL
B
2
B
2
B
108
B
108
X-RAY DIFFRACTION
1
ALL
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
5
A
N
ILE
5
A
O
LYS
57
A
O
LYS
57
A
O
LEU
58
A
O
LEU
58
A
N
ASP
26
A
N
ASP
26
A
N
ILE
23
A
N
ILE
23
A
O
PHE
81
A
O
PHE
81
A
N
LEU
78
A
N
LEU
78
A
O
LYS
90
A
O
LYS
90
B
N
ILE
5
B
N
ILE
5
B
O
LYS
57
B
O
LYS
57
B
O
ALA
56
B
O
ALA
56
B
N
LEU
24
B
N
LEU
24
B
N
VAL
25
B
N
VAL
25
B
O
LEU
79
B
O
LEU
79
B
N
LYS
82
B
N
LYS
82
B
O
GLU
85
B
O
GLU
85
1
B
NE
ARG
73
B
NE
ARG
73
1
Y
1
B
CZ
ARG
73
B
CZ
ARG
73
1
Y
1
B
NH1
ARG
73
B
NH1
ARG
73
1
Y
1
B
NH2
ARG
73
B
NH2
ARG
73
1
Y
1
B
CD
LYS
90
B
CD
LYS
90
1
Y
1
B
CE
LYS
90
B
CE
LYS
90
1
Y
1
B
NZ
LYS
90
B
NZ
LYS
90
1
Y
1
A
SER
1
A
SER
1
1
Y
1
B
SER
1
B
SER
1
1
Y
1
A
C4
MPD
501
WRONG HAND
1
14.19
2.30
115.30
129.49
A
A
A
CA
CB
CG
LEU
LEU
LEU
53
53
53
N
1
A
ARG
73
-112.17
-82.14
23.717
-1.442
-0.721
0.000
-1.442
0.000
2.163
0.934
0.889
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.2295
0.1864
0.188
0.188
2.400
50.800
408
9093
8566
4.763
93.915
0.214
0.174
15.511
0.189
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.607
0.267
0.800
0.800
1.400
2TRX_A
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.400
50.800
88
1726
16
0
1622
0.008
0.022
1728
1.228
1.991
2360
5.665
5.000
228
34.261
26.957
69
15.116
15.000
302
17.320
15.000
1
0.072
0.200
273
0.003
0.020
1279
0.195
0.200
742
0.300
0.200
1165
0.119
0.200
99
0.226
0.200
28
0.172
0.200
11
0.369
1.500
1118
0.665
2.000
1759
0.897
3.000
686
1.478
4.500
595
0.297
0.232
0.236
2.462
24
497
662
20
78.701
0.29
0.205
0.208
2.530
22
521
642
20
84.579
0.326
0.226
0.231
2.603
27
529
637
20
87.284
0.21
0.199
0.199
2.683
23
525
595
20
92.101
0.338
0.21
0.217
2.770
26
532
606
20
92.079
0.334
0.22
0.226
2.867
25
529
578
20
95.848
0.234
0.208
0.210
2.975
25
510
561
20
95.365
0.27
0.196
0.201
3.096
29
490
534
20
97.191
0.204
0.176
0.178
3.233
23
483
516
20
98.062
0.236
0.179
0.182
3.390
29
458
496
20
98.185
0.238
0.171
0.175
3.573
26
429
466
20
97.639
0.174
0.169
0.169
3.789
16
424
447
20
98.434
0.153
0.157
0.156
4.049
19
400
423
20
99.054
0.215
0.146
0.149
4.371
22
367
394
20
98.731
0.179
0.152
0.153
4.784
14
343
360
20
99.167
0.245
0.172
0.175
5.343
12
321
336
20
99.107
0.176
0.196
0.195
6.158
17
272
289
20
100.000
0.215
0.229
0.229
7.515
10
249
259
20
100.000
0.172
0.167
0.167
10.513
12
183
195
20
100.000
0.19
0.299
0.290
50.800
7
96
125
20
82.400
35.742
2.40
50.80
2H6Y
9093
9093
0.048
1
18.96
10.25
99.5
2.40
2.45
3.45
492
0.3529
1
2.90
93.4
data scaling
http://www.bruker-axs.de/index.html
SAINT
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
24/04/2001
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
refmac_5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 20, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.700
data reduction
PROTEUM PLUS
2
data scaling
SADABS
data reduction
XPREP
model building
Coot
model building
MolProbity
Crystal Structure of Thioredoxin Mutant E48D in Hexagonal (p61) Space Group
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
11
A
SER
11
HELX_P
A
VAL
16
A
VAL
16
1
1
6
A
CYS
32
A
CYS
32
HELX_P
A
TYR
49
A
TYR
49
1
2
18
A
THR
66
A
THR
66
HELX_P
A
GLY
71
A
GLY
71
5
3
6
A
SER
95
A
SER
95
HELX_P
A
ALA
108
A
ALA
108
1
4
14
B
SER
11
B
SER
11
HELX_P
B
VAL
16
B
VAL
16
1
5
6
B
CYS
32
B
CYS
32
HELX_P
B
TYR
49
B
TYR
49
1
6
18
B
GLY
65
B
GLY
65
HELX_P
B
TYR
70
B
TYR
70
1
7
6
B
SER
95
B
SER
95
HELX_P
B
LEU
107
B
LEU
107
1
8
13
disulf
2.045
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
35
A
SG
CYS
35
1_555
disulf
2.053
B
CYS
32
B
SG
CYS
32
1_555
B
CYS
35
B
SG
CYS
35
1_555
ELECTRON TRANSPORT
Alpha Beta, Electron transport
A
ILE
75
A
ILE
75
1
A
PRO
76
A
PRO
76
-1.04
B
ILE
75
B
ILE
75
1
B
PRO
76
B
PRO
76
5.69
Q2M889_ECOLI
UNP
1
2
Q2M889
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
2
109
2H6Y
1
108
Q2M889
A
1
1
108
2
109
2H6Y
1
108
Q2M889
B
1
1
108
1
GLU
engineered mutation
ASP
48
2H6Y
A
Q2M889
UNP
49
48
2
GLU
engineered mutation
ASP
48
2H6Y
B
Q2M889
UNP
49
48
5
5
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
ILE
5
A
ILE
5
A
HIS
6
A
HIS
6
A
THR
54
A
THR
54
A
ASN
59
A
ASN
59
A
ALA
22
A
ALA
22
A
TRP
28
A
TRP
28
A
THR
77
A
THR
77
A
LYS
82
A
LYS
82
A
GLU
85
A
GLU
85
A
VAL
91
A
VAL
91
B
ILE
5
B
ILE
5
B
HIS
6
B
HIS
6
B
THR
54
B
THR
54
B
ASN
59
B
ASN
59
B
ALA
22
B
ALA
22
B
TRP
28
B
TRP
28
B
THR
77
B
THR
77
B
LYS
82
B
LYS
82
B
GLU
85
B
GLU
85
B
VAL
86
B
VAL
86
BINDING SITE FOR RESIDUE MPD A 501
A
MPD
501
Software
2
BINDING SITE FOR RESIDUE MPD A 502
A
MPD
502
Software
8
A
ARG
73
A
ARG
73
2
1_555
A
HOH
554
E
HOH
2
1_555
A
ASP
20
A
ASP
20
8
1_555
A
GLY
21
A
GLY
21
8
1_555
A
ALA
22
A
ALA
22
8
1_555
A
GLY
51
A
GLY
51
8
1_555
A
LYS
52
A
LYS
52
8
1_555
A
LEU
53
A
LEU
53
8
1_555
A
THR
54
A
THR
54
8
1_555
A
HOH
508
E
HOH
8
1_555
169
P 61