0.009706 0.005604 0.000000 0.000000 0.011208 0.000000 0.000000 0.000000 0.024827 0.00000 0.00000 0.00000 Gavira, J.A. Godoy-Ruiz, R. Ibarra-Molero, B. Sanchez-Ruiz, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 103.026 103.026 40.279 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N O N 253 N C N 254 N C N 255 S C N 256 N O N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing US Biophys.J. BIOJAU 0030 0006-3495 89 3320 3331 10.1529/biophysj.105.067025 16100262 A stability pattern of protein hydrophobic mutations that reflects evolutionary structural optimization. 2005 10.2210/pdb2h70/pdb pdb_00002h70 100.0 1 MONTEL OPTICS CCD 2006-04-12 BRUKER SMART 6000 NI FILTER SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE OTHER 11701.413 Thioredoxin D9E 2 man polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 3 syn non-polymer 18.015 water 61 nat water no no SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample trxA 562 Escherichia coli 562 Escherichia coli JF521 plasmid pTk100 1 2.54 51.60 3.50 60% (v/v) MPD, Ac2Cu 1 mM, Hepes 15 mM pH 7.0, Counter-diffusion, temperature 277K, pH 3.50 277 software database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Advisory Version format compliance Structure summary Refinement description Database references Derived calculations Data collection Refinement description 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 1 3 2012-05-02 1 4 2017-10-18 1 5 2021-10-20 1 6 2023-08-30 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-06-01 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 2TRX 2TRX-A PDB experimental model MPD 501 2 MPD MPD 501 A MPD 502 2 MPD MPD 502 A MPD 503 2 MPD MPD 503 B HOH 2 3 HOH HOH 503 A HOH 6 3 HOH HOH 504 A HOH 8 3 HOH HOH 505 A HOH 9 3 HOH HOH 506 A HOH 10 3 HOH HOH 507 A HOH 12 3 HOH HOH 508 A HOH 15 3 HOH HOH 509 A HOH 16 3 HOH HOH 510 A HOH 19 3 HOH HOH 511 A HOH 21 3 HOH HOH 512 A HOH 22 3 HOH HOH 513 A HOH 26 3 HOH HOH 514 A HOH 27 3 HOH HOH 515 A HOH 30 3 HOH HOH 516 A HOH 31 3 HOH HOH 517 A HOH 34 3 HOH HOH 518 A HOH 35 3 HOH HOH 519 A HOH 37 3 HOH HOH 520 A HOH 40 3 HOH HOH 521 A HOH 41 3 HOH HOH 522 A HOH 44 3 HOH HOH 523 A HOH 45 3 HOH HOH 524 A HOH 46 3 HOH HOH 525 A HOH 47 3 HOH HOH 526 A HOH 50 3 HOH HOH 527 A HOH 52 3 HOH HOH 528 A HOH 53 3 HOH HOH 529 A HOH 54 3 HOH HOH 530 A HOH 55 3 HOH HOH 531 A HOH 57 3 HOH HOH 532 A HOH 58 3 HOH HOH 533 A HOH 1 3 HOH HOH 504 B HOH 3 3 HOH HOH 505 B HOH 4 3 HOH HOH 506 B HOH 5 3 HOH HOH 507 B HOH 7 3 HOH HOH 508 B HOH 11 3 HOH HOH 509 B HOH 13 3 HOH HOH 510 B HOH 14 3 HOH HOH 511 B HOH 17 3 HOH HOH 512 B HOH 18 3 HOH HOH 513 B HOH 20 3 HOH HOH 514 B HOH 23 3 HOH HOH 515 B HOH 24 3 HOH HOH 516 B HOH 25 3 HOH HOH 517 B HOH 28 3 HOH HOH 518 B HOH 29 3 HOH HOH 519 B HOH 32 3 HOH HOH 520 B HOH 33 3 HOH HOH 521 B HOH 36 3 HOH HOH 522 B HOH 38 3 HOH HOH 523 B HOH 39 3 HOH HOH 524 B HOH 42 3 HOH HOH 525 B HOH 43 3 HOH HOH 526 B HOH 48 3 HOH HOH 527 B HOH 49 3 HOH HOH 528 B HOH 51 3 HOH HOH 529 B HOH 56 3 HOH HOH 530 B HOH 59 3 HOH HOH 531 B HOH 60 3 HOH HOH 532 B HOH 61 3 HOH HOH 533 B n 1 1 A ASP 2 n 2 ASP 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A HIS 6 n 6 HIS 6 A LEU 7 n 7 LEU 7 A THR 8 n 8 THR 8 A GLU 9 n 9 GLU 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A PHE 27 n 27 PHE 27 A TRP 28 n 28 TRP 28 A ALA 29 n 29 ALA 29 A GLU 30 n 30 GLU 30 A TRP 31 n 31 TRP 31 A CYS 32 n 32 CYS 32 A GLY 33 n 33 GLY 33 A PRO 34 n 34 PRO 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A MET 37 n 37 MET 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A PRO 40 n 40 PRO 40 A ILE 41 n 41 ILE 41 A LEU 42 n 42 LEU 42 A ASP 43 n 43 ASP 43 A GLU 44 n 44 GLU 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLN 62 n 62 GLN 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A ASN 83 n 83 ASN 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A ASN 106 n 106 ASN 106 A LEU 107 n 107 LEU 107 A ALA 108 n 108 ALA 108 A n 1 1 B ASP 2 n 2 ASP 2 B LYS 3 n 3 LYS 3 B ILE 4 n 4 ILE 4 B ILE 5 n 5 ILE 5 B HIS 6 n 6 HIS 6 B LEU 7 n 7 LEU 7 B THR 8 n 8 THR 8 B GLU 9 n 9 GLU 9 B ASP 10 n 10 ASP 10 B SER 11 n 11 SER 11 B PHE 12 n 12 PHE 12 B ASP 13 n 13 ASP 13 B THR 14 n 14 THR 14 B ASP 15 n 15 ASP 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B LYS 18 n 18 LYS 18 B ALA 19 n 19 ALA 19 B ASP 20 n 20 ASP 20 B GLY 21 n 21 GLY 21 B ALA 22 n 22 ALA 22 B ILE 23 n 23 ILE 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B ASP 26 n 26 ASP 26 B PHE 27 n 27 PHE 27 B TRP 28 n 28 TRP 28 B ALA 29 n 29 ALA 29 B GLU 30 n 30 GLU 30 B TRP 31 n 31 TRP 31 B CYS 32 n 32 CYS 32 B GLY 33 n 33 GLY 33 B PRO 34 n 34 PRO 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B MET 37 n 37 MET 37 B ILE 38 n 38 ILE 38 B ALA 39 n 39 ALA 39 B PRO 40 n 40 PRO 40 B ILE 41 n 41 ILE 41 B LEU 42 n 42 LEU 42 B ASP 43 n 43 ASP 43 B GLU 44 n 44 GLU 44 B ILE 45 n 45 ILE 45 B ALA 46 n 46 ALA 46 B ASP 47 n 47 ASP 47 B GLU 48 n 48 GLU 48 B TYR 49 n 49 TYR 49 B GLN 50 n 50 GLN 50 B GLY 51 n 51 GLY 51 B LYS 52 n 52 LYS 52 B LEU 53 n 53 LEU 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B ALA 56 n 56 ALA 56 B LYS 57 n 57 LYS 57 B LEU 58 n 58 LEU 58 B ASN 59 n 59 ASN 59 B ILE 60 n 60 ILE 60 B ASP 61 n 61 ASP 61 B GLN 62 n 62 GLN 62 B ASN 63 n 63 ASN 63 B PRO 64 n 64 PRO 64 B GLY 65 n 65 GLY 65 B THR 66 n 66 THR 66 B ALA 67 n 67 ALA 67 B PRO 68 n 68 PRO 68 B LYS 69 n 69 LYS 69 B TYR 70 n 70 TYR 70 B GLY 71 n 71 GLY 71 B ILE 72 n 72 ILE 72 B ARG 73 n 73 ARG 73 B GLY 74 n 74 GLY 74 B ILE 75 n 75 ILE 75 B PRO 76 n 76 PRO 76 B THR 77 n 77 THR 77 B LEU 78 n 78 LEU 78 B LEU 79 n 79 LEU 79 B LEU 80 n 80 LEU 80 B PHE 81 n 81 PHE 81 B LYS 82 n 82 LYS 82 B ASN 83 n 83 ASN 83 B GLY 84 n 84 GLY 84 B GLU 85 n 85 GLU 85 B VAL 86 n 86 VAL 86 B ALA 87 n 87 ALA 87 B ALA 88 n 88 ALA 88 B THR 89 n 89 THR 89 B LYS 90 n 90 LYS 90 B VAL 91 n 91 VAL 91 B GLY 92 n 92 GLY 92 B ALA 93 n 93 ALA 93 B LEU 94 n 94 LEU 94 B SER 95 n 95 SER 95 B LYS 96 n 96 LYS 96 B GLY 97 n 97 GLY 97 B GLN 98 n 98 GLN 98 B LEU 99 n 99 LEU 99 B LYS 100 n 100 LYS 100 B GLU 101 n 101 GLU 101 B PHE 102 n 102 PHE 102 B LEU 103 n 103 LEU 103 B ASP 104 n 104 ASP 104 B ALA 105 n 105 ALA 105 B ASN 106 n 106 ASN 106 B LEU 107 n 107 LEU 107 B ALA 108 n 108 ALA 108 B 3.6361 -0.7185 -0.6767 11.9988 -0.0238 0.7918 0.2552 -0.0467 0.1378 0.7654 0.0302 0.3726 -0.2287 0.0784 -0.2853 -0.1272 -0.0163 0.0953 -0.2200 -0.0884 -0.2284 refined -30.4810 21.6910 1.8520 X-RAY DIFFRACTION A 2 A 2 A 108 A 108 X-RAY DIFFRACTION 1 B 2 B 2 B 108 B 108 X-RAY DIFFRACTION 1 author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 5 A N ILE 5 A O VAL 55 A O VAL 55 A O THR 54 A O THR 54 A N ALA 22 A N ALA 22 A N ILE 23 A N ILE 23 A O PHE 81 A O PHE 81 A N LYS 82 A N LYS 82 A O GLU 85 A O GLU 85 B O ALA 56 B O ALA 56 B N LEU 24 B N LEU 24 B N ILE 23 B N ILE 23 B O PHE 81 B O PHE 81 B N LEU 80 B N LEU 80 B O ALA 87 B O ALA 87 1 B CG LYS 69 B CG LYS 69 1 Y 1 B CD LYS 69 B CD LYS 69 1 Y 1 B CE LYS 69 B CE LYS 69 1 Y 1 B NZ LYS 69 B NZ LYS 69 1 Y 1 B CD ARG 73 B CD ARG 73 1 Y 1 B NE ARG 73 B NE ARG 73 1 Y 1 B CZ ARG 73 B CZ ARG 73 1 Y 1 B NH1 ARG 73 B NH1 ARG 73 1 Y 1 B NH2 ARG 73 B NH2 ARG 73 1 Y 1 A SER 1 A SER 1 1 Y 1 B SER 1 B SER 1 1 Y 1 A C4 MPD 501 WRONG HAND 1 B B CG CD2 HIS HIS 6 6 0.064 0.009 1.354 1.418 A A N 1 B B CD OE1 GLU GLU 44 44 0.089 0.011 1.252 1.341 N 1 A ASN 83 31.98 60.62 1 B VAL 16 -140.67 -52.82 1 B TYR 49 -91.63 35.49 1 B THR 66 -74.25 -75.77 1 B ALA 93 -101.43 73.35 52.48 -4.30400 -2.15200 0.00000 -4.30400 0.00000 6.45600 0.942 0.889 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.292 0.206 0.21 2.70 40.28 324 6852 4.729 99.4 38.683 0.383 RANDOM LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.416 0.80 0.80 1.40 2TRX-A MAXIMUM LIKELIHOOD MASK BULK SOLVENT 2.70 40.28 61 1710 24 0 1625 0.019 0.022 1739 1.619 1.999 2376 6.702 5.000 230 34.735 26.957 69 17.876 15.000 308 19.281 15.000 1 0.097 0.200 275 0.005 0.020 1279 0.241 0.200 835 0.318 0.200 1157 0.199 0.200 82 0.197 0.200 20 0.165 0.200 6 0.474 1.500 1119 0.843 2.000 1756 1.251 3.000 707 2.095 4.500 611 0.54 0.345 2.77 26 463 20 98.39 58.51 2.700 40.280 2H70 6875 0.0366 1 22.5300 11.810 99.6 2.70 2.80 3.190 0.3791 1 5.80 98.9 data scaling http://www.bruker-axs.de/index.html SAINT package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Murshudov, G.N. ccp4@dl.ac.uk 24/04/2001 Fortran http://www.ccp4.ac.uk/main.html REFMAC program refmac_5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu July 20, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 data reduction PROTEUM PLUS 2 data scaling SADABS data reduction XPREP model building Coot model building MolProbity Crystal Structure of Thioredoxin Mutant D9E in Hexagonal (p61) Space Group 1 N N 1 N N 2 N N 2 N N 2 N N 3 N N 3 N N A SER 11 A SER 11 HELX_P A VAL 16 A VAL 16 1 1 6 A CYS 32 A CYS 32 HELX_P A TYR 49 A TYR 49 1 2 18 A THR 66 A THR 66 HELX_P A GLY 71 A GLY 71 5 3 6 A SER 95 A SER 95 HELX_P A ALA 108 A ALA 108 1 4 14 B SER 11 B SER 11 HELX_P B VAL 16 B VAL 16 1 5 6 B CYS 32 B CYS 32 HELX_P B TYR 49 B TYR 49 1 6 18 B GLY 65 B GLY 65 HELX_P B TYR 70 B TYR 70 1 7 6 B SER 95 B SER 95 HELX_P B LEU 107 B LEU 107 1 8 13 disulf 2.015 A CYS 32 A SG CYS 32 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.039 B CYS 32 B SG CYS 32 1_555 B CYS 35 B SG CYS 35 1_555 ELECTRON TRANSPORT Alpha Beta, Electron transport A ILE 75 A ILE 75 1 A PRO 76 A PRO 76 0.46 B ILE 75 B ILE 75 1 B PRO 76 B PRO 76 -6.34 Q2M889_ECOLI UNP 1 2 Q2M889 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA 2 109 2H70 1 108 Q2M889 A 1 1 108 2 109 2H70 1 108 Q2M889 B 1 1 108 1 ASP engineered mutation GLU 9 2H70 A Q2M889 UNP 10 9 2 ASP engineered mutation GLU 9 2H70 B Q2M889 UNP 10 9 5 4 parallel parallel anti-parallel anti-parallel parallel anti-parallel anti-parallel A ILE 5 A ILE 5 A HIS 6 A HIS 6 A THR 54 A THR 54 A ASN 59 A ASN 59 A ALA 22 A ALA 22 A TRP 28 A TRP 28 A THR 77 A THR 77 A LYS 82 A LYS 82 A GLU 85 A GLU 85 A VAL 91 A VAL 91 B THR 54 B THR 54 B ASN 59 B ASN 59 B ALA 22 B ALA 22 B TRP 28 B TRP 28 B THR 77 B THR 77 B LYS 82 B LYS 82 B GLU 85 B GLU 85 B VAL 91 B VAL 91 BINDING SITE FOR RESIDUE MPD A 501 A MPD 501 Software 2 BINDING SITE FOR RESIDUE MPD A 502 A MPD 502 Software 5 BINDING SITE FOR RESIDUE MPD B 503 B MPD 503 Software 1 A ARG 73 A ARG 73 2 1_555 A GLY 74 A GLY 74 2 1_555 A ASP 20 A ASP 20 5 1_555 A GLY 21 A GLY 21 5 1_555 A ALA 22 A ALA 22 5 1_555 A LEU 53 A LEU 53 5 1_555 A THR 54 A THR 54 5 1_555 B ILE 60 B ILE 60 1 1_555 169 P 61