0.009706
0.005604
0.000000
0.000000
0.011208
0.000000
0.000000
0.000000
0.024827
0.00000
0.00000
0.00000
Gavira, J.A.
Godoy-Ruiz, R.
Ibarra-Molero, B.
Sanchez-Ruiz, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
103.026
103.026
40.279
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
US
Biophys.J.
BIOJAU
0030
0006-3495
89
3320
3331
10.1529/biophysj.105.067025
16100262
A stability pattern of protein hydrophobic mutations that reflects evolutionary structural optimization.
2005
10.2210/pdb2h70/pdb
pdb_00002h70
100.0
1
MONTEL OPTICS
CCD
2006-04-12
BRUKER SMART 6000
NI FILTER
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
OTHER
11701.413
Thioredoxin
D9E
2
man
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
3
syn
non-polymer
18.015
water
61
nat
water
no
no
SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
SDKIIHLTEDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
trxA
562
Escherichia coli
562
Escherichia coli
JF521
plasmid
pTk100
1
2.54
51.60
3.50
60% (v/v) MPD, Ac2Cu 1 mM, Hepes 15 mM pH 7.0, Counter-diffusion, temperature 277K, pH 3.50
277
software
database_2
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
repository
Initial release
Version format compliance
Advisory
Version format compliance
Structure summary
Refinement description
Database references
Derived calculations
Data collection
Refinement description
1
0
2007-05-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2012-05-02
1
4
2017-10-18
1
5
2021-10-20
1
6
2023-08-30
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-06-01
REL
REL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
2TRX
2TRX-A
PDB
experimental model
MPD
501
2
MPD
MPD
501
A
MPD
502
2
MPD
MPD
502
A
MPD
503
2
MPD
MPD
503
B
HOH
2
3
HOH
HOH
503
A
HOH
6
3
HOH
HOH
504
A
HOH
8
3
HOH
HOH
505
A
HOH
9
3
HOH
HOH
506
A
HOH
10
3
HOH
HOH
507
A
HOH
12
3
HOH
HOH
508
A
HOH
15
3
HOH
HOH
509
A
HOH
16
3
HOH
HOH
510
A
HOH
19
3
HOH
HOH
511
A
HOH
21
3
HOH
HOH
512
A
HOH
22
3
HOH
HOH
513
A
HOH
26
3
HOH
HOH
514
A
HOH
27
3
HOH
HOH
515
A
HOH
30
3
HOH
HOH
516
A
HOH
31
3
HOH
HOH
517
A
HOH
34
3
HOH
HOH
518
A
HOH
35
3
HOH
HOH
519
A
HOH
37
3
HOH
HOH
520
A
HOH
40
3
HOH
HOH
521
A
HOH
41
3
HOH
HOH
522
A
HOH
44
3
HOH
HOH
523
A
HOH
45
3
HOH
HOH
524
A
HOH
46
3
HOH
HOH
525
A
HOH
47
3
HOH
HOH
526
A
HOH
50
3
HOH
HOH
527
A
HOH
52
3
HOH
HOH
528
A
HOH
53
3
HOH
HOH
529
A
HOH
54
3
HOH
HOH
530
A
HOH
55
3
HOH
HOH
531
A
HOH
57
3
HOH
HOH
532
A
HOH
58
3
HOH
HOH
533
A
HOH
1
3
HOH
HOH
504
B
HOH
3
3
HOH
HOH
505
B
HOH
4
3
HOH
HOH
506
B
HOH
5
3
HOH
HOH
507
B
HOH
7
3
HOH
HOH
508
B
HOH
11
3
HOH
HOH
509
B
HOH
13
3
HOH
HOH
510
B
HOH
14
3
HOH
HOH
511
B
HOH
17
3
HOH
HOH
512
B
HOH
18
3
HOH
HOH
513
B
HOH
20
3
HOH
HOH
514
B
HOH
23
3
HOH
HOH
515
B
HOH
24
3
HOH
HOH
516
B
HOH
25
3
HOH
HOH
517
B
HOH
28
3
HOH
HOH
518
B
HOH
29
3
HOH
HOH
519
B
HOH
32
3
HOH
HOH
520
B
HOH
33
3
HOH
HOH
521
B
HOH
36
3
HOH
HOH
522
B
HOH
38
3
HOH
HOH
523
B
HOH
39
3
HOH
HOH
524
B
HOH
42
3
HOH
HOH
525
B
HOH
43
3
HOH
HOH
526
B
HOH
48
3
HOH
HOH
527
B
HOH
49
3
HOH
HOH
528
B
HOH
51
3
HOH
HOH
529
B
HOH
56
3
HOH
HOH
530
B
HOH
59
3
HOH
HOH
531
B
HOH
60
3
HOH
HOH
532
B
HOH
61
3
HOH
HOH
533
B
n
1
1
A
ASP
2
n
2
ASP
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
HIS
6
n
6
HIS
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
GLU
9
n
9
GLU
9
A
ASP
10
n
10
ASP
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
ASP
13
n
13
ASP
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
TRP
28
n
28
TRP
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
TRP
31
n
31
TRP
31
A
CYS
32
n
32
CYS
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
CYS
35
n
35
CYS
35
A
LYS
36
n
36
LYS
36
A
MET
37
n
37
MET
37
A
ILE
38
n
38
ILE
38
A
ALA
39
n
39
ALA
39
A
PRO
40
n
40
PRO
40
A
ILE
41
n
41
ILE
41
A
LEU
42
n
42
LEU
42
A
ASP
43
n
43
ASP
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLN
62
n
62
GLN
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
GLY
74
n
74
GLY
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
THR
77
n
77
THR
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
ASN
83
n
83
ASN
83
A
GLY
84
n
84
GLY
84
A
GLU
85
n
85
GLU
85
A
VAL
86
n
86
VAL
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
THR
89
n
89
THR
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
LYS
96
n
96
LYS
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
GLU
101
n
101
GLU
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
ASP
104
n
104
ASP
104
A
ALA
105
n
105
ALA
105
A
ASN
106
n
106
ASN
106
A
LEU
107
n
107
LEU
107
A
ALA
108
n
108
ALA
108
A
n
1
1
B
ASP
2
n
2
ASP
2
B
LYS
3
n
3
LYS
3
B
ILE
4
n
4
ILE
4
B
ILE
5
n
5
ILE
5
B
HIS
6
n
6
HIS
6
B
LEU
7
n
7
LEU
7
B
THR
8
n
8
THR
8
B
GLU
9
n
9
GLU
9
B
ASP
10
n
10
ASP
10
B
SER
11
n
11
SER
11
B
PHE
12
n
12
PHE
12
B
ASP
13
n
13
ASP
13
B
THR
14
n
14
THR
14
B
ASP
15
n
15
ASP
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
LYS
18
n
18
LYS
18
B
ALA
19
n
19
ALA
19
B
ASP
20
n
20
ASP
20
B
GLY
21
n
21
GLY
21
B
ALA
22
n
22
ALA
22
B
ILE
23
n
23
ILE
23
B
LEU
24
n
24
LEU
24
B
VAL
25
n
25
VAL
25
B
ASP
26
n
26
ASP
26
B
PHE
27
n
27
PHE
27
B
TRP
28
n
28
TRP
28
B
ALA
29
n
29
ALA
29
B
GLU
30
n
30
GLU
30
B
TRP
31
n
31
TRP
31
B
CYS
32
n
32
CYS
32
B
GLY
33
n
33
GLY
33
B
PRO
34
n
34
PRO
34
B
CYS
35
n
35
CYS
35
B
LYS
36
n
36
LYS
36
B
MET
37
n
37
MET
37
B
ILE
38
n
38
ILE
38
B
ALA
39
n
39
ALA
39
B
PRO
40
n
40
PRO
40
B
ILE
41
n
41
ILE
41
B
LEU
42
n
42
LEU
42
B
ASP
43
n
43
ASP
43
B
GLU
44
n
44
GLU
44
B
ILE
45
n
45
ILE
45
B
ALA
46
n
46
ALA
46
B
ASP
47
n
47
ASP
47
B
GLU
48
n
48
GLU
48
B
TYR
49
n
49
TYR
49
B
GLN
50
n
50
GLN
50
B
GLY
51
n
51
GLY
51
B
LYS
52
n
52
LYS
52
B
LEU
53
n
53
LEU
53
B
THR
54
n
54
THR
54
B
VAL
55
n
55
VAL
55
B
ALA
56
n
56
ALA
56
B
LYS
57
n
57
LYS
57
B
LEU
58
n
58
LEU
58
B
ASN
59
n
59
ASN
59
B
ILE
60
n
60
ILE
60
B
ASP
61
n
61
ASP
61
B
GLN
62
n
62
GLN
62
B
ASN
63
n
63
ASN
63
B
PRO
64
n
64
PRO
64
B
GLY
65
n
65
GLY
65
B
THR
66
n
66
THR
66
B
ALA
67
n
67
ALA
67
B
PRO
68
n
68
PRO
68
B
LYS
69
n
69
LYS
69
B
TYR
70
n
70
TYR
70
B
GLY
71
n
71
GLY
71
B
ILE
72
n
72
ILE
72
B
ARG
73
n
73
ARG
73
B
GLY
74
n
74
GLY
74
B
ILE
75
n
75
ILE
75
B
PRO
76
n
76
PRO
76
B
THR
77
n
77
THR
77
B
LEU
78
n
78
LEU
78
B
LEU
79
n
79
LEU
79
B
LEU
80
n
80
LEU
80
B
PHE
81
n
81
PHE
81
B
LYS
82
n
82
LYS
82
B
ASN
83
n
83
ASN
83
B
GLY
84
n
84
GLY
84
B
GLU
85
n
85
GLU
85
B
VAL
86
n
86
VAL
86
B
ALA
87
n
87
ALA
87
B
ALA
88
n
88
ALA
88
B
THR
89
n
89
THR
89
B
LYS
90
n
90
LYS
90
B
VAL
91
n
91
VAL
91
B
GLY
92
n
92
GLY
92
B
ALA
93
n
93
ALA
93
B
LEU
94
n
94
LEU
94
B
SER
95
n
95
SER
95
B
LYS
96
n
96
LYS
96
B
GLY
97
n
97
GLY
97
B
GLN
98
n
98
GLN
98
B
LEU
99
n
99
LEU
99
B
LYS
100
n
100
LYS
100
B
GLU
101
n
101
GLU
101
B
PHE
102
n
102
PHE
102
B
LEU
103
n
103
LEU
103
B
ASP
104
n
104
ASP
104
B
ALA
105
n
105
ALA
105
B
ASN
106
n
106
ASN
106
B
LEU
107
n
107
LEU
107
B
ALA
108
n
108
ALA
108
B
3.6361
-0.7185
-0.6767
11.9988
-0.0238
0.7918
0.2552
-0.0467
0.1378
0.7654
0.0302
0.3726
-0.2287
0.0784
-0.2853
-0.1272
-0.0163
0.0953
-0.2200
-0.0884
-0.2284
refined
-30.4810
21.6910
1.8520
X-RAY DIFFRACTION
A
2
A
2
A
108
A
108
X-RAY DIFFRACTION
1
B
2
B
2
B
108
B
108
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
5
A
N
ILE
5
A
O
VAL
55
A
O
VAL
55
A
O
THR
54
A
O
THR
54
A
N
ALA
22
A
N
ALA
22
A
N
ILE
23
A
N
ILE
23
A
O
PHE
81
A
O
PHE
81
A
N
LYS
82
A
N
LYS
82
A
O
GLU
85
A
O
GLU
85
B
O
ALA
56
B
O
ALA
56
B
N
LEU
24
B
N
LEU
24
B
N
ILE
23
B
N
ILE
23
B
O
PHE
81
B
O
PHE
81
B
N
LEU
80
B
N
LEU
80
B
O
ALA
87
B
O
ALA
87
1
B
CG
LYS
69
B
CG
LYS
69
1
Y
1
B
CD
LYS
69
B
CD
LYS
69
1
Y
1
B
CE
LYS
69
B
CE
LYS
69
1
Y
1
B
NZ
LYS
69
B
NZ
LYS
69
1
Y
1
B
CD
ARG
73
B
CD
ARG
73
1
Y
1
B
NE
ARG
73
B
NE
ARG
73
1
Y
1
B
CZ
ARG
73
B
CZ
ARG
73
1
Y
1
B
NH1
ARG
73
B
NH1
ARG
73
1
Y
1
B
NH2
ARG
73
B
NH2
ARG
73
1
Y
1
A
SER
1
A
SER
1
1
Y
1
B
SER
1
B
SER
1
1
Y
1
A
C4
MPD
501
WRONG HAND
1
B
B
CG
CD2
HIS
HIS
6
6
0.064
0.009
1.354
1.418
A
A
N
1
B
B
CD
OE1
GLU
GLU
44
44
0.089
0.011
1.252
1.341
N
1
A
ASN
83
31.98
60.62
1
B
VAL
16
-140.67
-52.82
1
B
TYR
49
-91.63
35.49
1
B
THR
66
-74.25
-75.77
1
B
ALA
93
-101.43
73.35
52.48
-4.30400
-2.15200
0.00000
-4.30400
0.00000
6.45600
0.942
0.889
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.292
0.206
0.21
2.70
40.28
324
6852
4.729
99.4
38.683
0.383
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
MOLECULAR REPLACEMENT
0.416
0.80
0.80
1.40
2TRX-A
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.70
40.28
61
1710
24
0
1625
0.019
0.022
1739
1.619
1.999
2376
6.702
5.000
230
34.735
26.957
69
17.876
15.000
308
19.281
15.000
1
0.097
0.200
275
0.005
0.020
1279
0.241
0.200
835
0.318
0.200
1157
0.199
0.200
82
0.197
0.200
20
0.165
0.200
6
0.474
1.500
1119
0.843
2.000
1756
1.251
3.000
707
2.095
4.500
611
0.54
0.345
2.77
26
463
20
98.39
58.51
2.700
40.280
2H70
6875
0.0366
1
22.5300
11.810
99.6
2.70
2.80
3.190
0.3791
1
5.80
98.9
data scaling
http://www.bruker-axs.de/index.html
SAINT
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
24/04/2001
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
refmac_5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 20, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.700
data reduction
PROTEUM PLUS
2
data scaling
SADABS
data reduction
XPREP
model building
Coot
model building
MolProbity
Crystal Structure of Thioredoxin Mutant D9E in Hexagonal (p61) Space Group
1
N
N
1
N
N
2
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
11
A
SER
11
HELX_P
A
VAL
16
A
VAL
16
1
1
6
A
CYS
32
A
CYS
32
HELX_P
A
TYR
49
A
TYR
49
1
2
18
A
THR
66
A
THR
66
HELX_P
A
GLY
71
A
GLY
71
5
3
6
A
SER
95
A
SER
95
HELX_P
A
ALA
108
A
ALA
108
1
4
14
B
SER
11
B
SER
11
HELX_P
B
VAL
16
B
VAL
16
1
5
6
B
CYS
32
B
CYS
32
HELX_P
B
TYR
49
B
TYR
49
1
6
18
B
GLY
65
B
GLY
65
HELX_P
B
TYR
70
B
TYR
70
1
7
6
B
SER
95
B
SER
95
HELX_P
B
LEU
107
B
LEU
107
1
8
13
disulf
2.015
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
35
A
SG
CYS
35
1_555
disulf
2.039
B
CYS
32
B
SG
CYS
32
1_555
B
CYS
35
B
SG
CYS
35
1_555
ELECTRON TRANSPORT
Alpha Beta, Electron transport
A
ILE
75
A
ILE
75
1
A
PRO
76
A
PRO
76
0.46
B
ILE
75
B
ILE
75
1
B
PRO
76
B
PRO
76
-6.34
Q2M889_ECOLI
UNP
1
2
Q2M889
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
2
109
2H70
1
108
Q2M889
A
1
1
108
2
109
2H70
1
108
Q2M889
B
1
1
108
1
ASP
engineered mutation
GLU
9
2H70
A
Q2M889
UNP
10
9
2
ASP
engineered mutation
GLU
9
2H70
B
Q2M889
UNP
10
9
5
4
parallel
parallel
anti-parallel
anti-parallel
parallel
anti-parallel
anti-parallel
A
ILE
5
A
ILE
5
A
HIS
6
A
HIS
6
A
THR
54
A
THR
54
A
ASN
59
A
ASN
59
A
ALA
22
A
ALA
22
A
TRP
28
A
TRP
28
A
THR
77
A
THR
77
A
LYS
82
A
LYS
82
A
GLU
85
A
GLU
85
A
VAL
91
A
VAL
91
B
THR
54
B
THR
54
B
ASN
59
B
ASN
59
B
ALA
22
B
ALA
22
B
TRP
28
B
TRP
28
B
THR
77
B
THR
77
B
LYS
82
B
LYS
82
B
GLU
85
B
GLU
85
B
VAL
91
B
VAL
91
BINDING SITE FOR RESIDUE MPD A 501
A
MPD
501
Software
2
BINDING SITE FOR RESIDUE MPD A 502
A
MPD
502
Software
5
BINDING SITE FOR RESIDUE MPD B 503
B
MPD
503
Software
1
A
ARG
73
A
ARG
73
2
1_555
A
GLY
74
A
GLY
74
2
1_555
A
ASP
20
A
ASP
20
5
1_555
A
GLY
21
A
GLY
21
5
1_555
A
ALA
22
A
ALA
22
5
1_555
A
LEU
53
A
LEU
53
5
1_555
A
THR
54
A
THR
54
5
1_555
B
ILE
60
B
ILE
60
1
1_555
169
P 61