0.009710
0.005606
0.000000
0.000000
0.011212
0.000000
0.000000
0.000000
0.023560
0.00000
0.00000
0.00000
Gavira, J.A.
Godoy-Ruiz, R.
Ibarra-Molero, B.
Sanchez-Ruiz, J.M.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
12
90.00
90.00
120.00
102.991
102.991
42.445
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C6 H14 O2
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
non-polymer
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
R
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
S
N
80
N
O
N
81
N
H
N
82
N
H
N
83
N
H
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
N
N
89
S
C
N
90
N
C
N
91
N
O
N
92
N
C
N
93
N
C
N
94
N
C
N
95
N
O
N
96
N
N
N
97
N
O
N
98
N
H
N
99
N
H
N
100
N
H
N
101
N
H
N
102
N
H
N
103
N
H
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
N
N
109
S
C
N
110
N
C
N
111
N
O
N
112
N
C
N
113
N
C
N
114
N
C
N
115
N
O
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
H
N
124
N
H
N
125
N
H
N
126
N
H
N
127
N
N
N
128
N
C
N
129
N
C
N
130
N
O
N
131
N
O
N
132
N
H
N
133
N
H
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
N
N
138
S
C
N
139
N
C
N
140
N
O
N
141
N
C
Y
142
N
C
Y
143
N
N
Y
144
N
C
Y
145
N
C
Y
146
N
N
N
147
N
O
N
148
N
H
N
149
N
H
N
150
N
H
N
151
N
H
N
152
N
H
N
153
N
H
N
154
N
H
N
155
N
H
N
156
N
H
N
157
N
H
N
158
N
O
N
159
N
H
N
160
N
H
N
161
N
N
N
162
S
C
N
163
N
C
N
164
N
O
N
165
S
C
N
166
N
C
N
167
N
C
N
168
N
C
N
169
N
O
N
170
N
H
N
171
N
H
N
172
N
H
N
173
N
H
N
174
N
H
N
175
N
H
N
176
N
H
N
177
N
H
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
N
N
184
S
C
N
185
N
C
N
186
N
O
N
187
N
C
N
188
N
C
N
189
N
C
N
190
N
C
N
191
N
O
N
192
N
H
N
193
N
H
N
194
N
H
N
195
N
H
N
196
N
H
N
197
N
H
N
198
N
H
N
199
N
H
N
200
N
H
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
N
N
206
S
C
N
207
N
C
N
208
N
O
N
209
N
C
N
210
N
C
N
211
N
C
N
212
N
C
N
213
N
N
N
214
N
O
N
215
N
H
N
216
N
H
N
217
N
H
N
218
N
H
N
219
N
H
N
220
N
H
N
221
N
H
N
222
N
H
N
223
N
H
N
224
N
H
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
N
N
231
S
C
N
232
N
C
N
233
N
O
N
234
N
C
N
235
N
C
N
236
N
S
N
237
N
C
N
238
N
O
N
239
N
H
N
240
N
H
N
241
N
H
N
242
N
H
N
243
N
H
N
244
N
H
N
245
N
H
N
246
N
H
N
247
N
H
N
248
N
H
N
249
N
H
N
250
N
C
N
251
N
C
N
252
N
O
N
253
N
C
N
254
N
C
N
255
S
C
N
256
N
O
N
257
N
C
N
258
N
H
N
259
N
H
N
260
N
H
N
261
N
H
N
262
N
H
N
263
N
H
N
264
N
H
N
265
N
H
N
266
N
H
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
N
N
273
S
C
N
274
N
C
N
275
N
O
N
276
N
C
Y
277
N
C
Y
278
N
C
Y
279
N
C
Y
280
N
C
Y
281
N
C
Y
282
N
C
N
283
N
O
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
H
N
291
N
H
N
292
N
H
N
293
N
H
N
294
N
H
N
295
N
N
N
296
S
C
N
297
N
C
N
298
N
O
N
299
N
C
N
300
N
C
N
301
N
C
N
302
N
O
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
H
N
308
N
H
N
309
N
H
N
310
N
H
N
311
N
H
N
312
N
N
N
313
S
C
N
314
N
C
N
315
N
O
N
316
N
C
N
317
N
O
N
318
N
O
N
319
N
H
N
320
N
H
N
321
N
H
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
N
N
327
S
C
N
328
N
C
N
329
N
O
N
330
R
C
N
331
N
O
N
332
N
C
N
333
N
O
N
334
N
H
N
335
N
H
N
336
N
H
N
337
N
H
N
338
N
H
N
339
N
H
N
340
N
H
N
341
N
H
N
342
N
H
N
343
N
N
N
344
S
C
N
345
N
C
N
346
N
O
N
347
N
C
Y
348
N
C
Y
349
N
C
Y
350
N
C
Y
351
N
N
Y
352
N
C
Y
353
N
C
Y
354
N
C
Y
355
N
C
Y
356
N
C
N
357
N
O
N
358
N
H
N
359
N
H
N
360
N
H
N
361
N
H
N
362
N
H
N
363
N
H
N
364
N
H
N
365
N
H
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
N
N
371
S
C
N
372
N
C
N
373
N
O
N
374
N
C
Y
375
N
C
Y
376
N
C
Y
377
N
C
Y
378
N
C
Y
379
N
C
Y
380
N
C
N
381
N
O
N
382
N
O
N
383
N
H
N
384
N
H
N
385
N
H
N
386
N
H
N
387
N
H
N
388
N
H
N
389
N
H
N
390
N
H
N
391
N
H
N
392
N
H
N
393
N
H
N
394
N
N
N
395
S
C
N
396
N
C
N
397
N
O
N
398
N
C
N
399
N
C
N
400
N
C
N
401
N
O
N
402
N
H
N
403
N
H
N
404
N
H
N
405
N
H
N
406
N
H
N
407
N
H
N
408
N
H
N
409
N
H
N
410
N
H
N
411
N
H
N
412
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
sing
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
doub
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
sing
N
96
N
sing
N
97
N
doub
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
sing
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
doub
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
sing
N
114
N
sing
N
115
N
sing
N
116
N
doub
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
sing
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
doub
N
127
N
sing
N
128
N
sing
N
129
N
sing
N
130
N
sing
N
131
N
sing
N
132
N
sing
N
133
N
sing
N
134
N
sing
N
135
N
doub
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
Y
140
N
sing
Y
141
N
doub
Y
142
N
doub
N
143
N
sing
Y
144
N
sing
N
145
N
sing
Y
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
doub
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
sing
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
doub
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
sing
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
doub
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
sing
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
doub
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
sing
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
N
235
N
sing
N
236
N
sing
N
237
N
sing
N
238
N
sing
N
239
N
sing
N
240
N
sing
N
241
N
sing
N
242
N
sing
N
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
sing
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
doub
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
Y
269
N
doub
Y
270
N
sing
Y
271
N
sing
N
272
N
sing
Y
273
N
doub
N
274
N
sing
Y
275
N
doub
N
276
N
sing
Y
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
sing
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
doub
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
sing
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
N
304
N
doub
N
305
N
sing
N
306
N
sing
N
307
N
sing
N
308
N
sing
N
309
N
sing
N
310
N
sing
N
311
N
sing
N
312
N
sing
N
313
N
sing
N
314
N
sing
N
315
N
sing
N
316
N
sing
N
317
N
doub
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
sing
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
N
332
N
sing
N
333
N
doub
N
334
N
sing
N
335
N
sing
N
336
N
sing
N
337
N
sing
Y
338
N
doub
Y
339
N
sing
Y
340
N
sing
N
341
N
sing
Y
342
N
doub
Y
343
N
sing
Y
344
N
sing
N
345
N
sing
Y
346
N
sing
Y
347
N
doub
N
348
N
sing
Y
349
N
doub
N
350
N
sing
Y
351
N
sing
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
doub
N
362
N
sing
N
363
N
sing
N
364
N
sing
N
365
N
sing
Y
366
N
doub
Y
367
N
sing
Y
368
N
sing
N
369
N
sing
Y
370
N
doub
N
371
N
sing
Y
372
N
doub
N
373
N
sing
Y
374
N
sing
N
375
N
sing
N
376
N
sing
N
377
N
sing
N
378
N
sing
N
379
N
sing
N
380
N
sing
N
381
N
sing
N
382
N
sing
N
383
N
sing
N
384
N
sing
N
385
N
doub
N
386
N
sing
N
387
N
sing
N
388
N
sing
N
389
N
sing
N
390
N
sing
N
391
N
sing
N
392
N
sing
N
393
N
sing
N
394
N
sing
N
395
N
sing
N
396
N
sing
To be Published
0353
Crystal Structure of Thioredoxin Mutant D43E in Hexagonal (p61) Space Group
UK
J.Mol.Biol.
JMOBAK
0070
0022-2836
336
313
318
Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations.
2004
10.2210/pdb2h73/pdb
pdb_00002h73
100
1
Montel Optics
CCD
BRUKER SMART 6000
Ni filter
SINGLE WAVELENGTH
M
x-ray
1
1.5418
1.0
1.5418
ROTATING ANODE
OTHER
11701.413
Thioredoxin
D43E
2
man
polymer
118.174
(4S)-2-METHYL-2,4-PENTANEDIOL
2
syn
non-polymer
18.015
water
79
nat
water
no
no
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
A,B
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Escherichia
Escherichia
sample
trxA
562
Escherichia coli
562
Escherichia coli
JF521
plasmid
pTk100
1
2.67
54.03
COUNTER-DIFFUSION
7
60% (v/v) MPD, Ac2Cu 1 mM, Hepes 15 mM pH 7.0, Counter-diffusion, temperature 277K
277
software
database_2
exptl_crystal_grow
struct_ref_seq_dif
struct_site
chem_comp_atom
chem_comp_bond
pdbx_initial_refinement_model
struct_ncs_dom_lim
repository
Initial release
Version format compliance
Advisory
Version format compliance
Structure summary
Refinement description
Database references
Derived calculations
Experimental preparation
Data collection
Refinement description
1
0
2007-05-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2012-05-02
1
4
2017-10-18
1
5
2021-10-20
1
6
2023-08-30
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_exptl_crystal_grow.method
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_ncs_dom_lim.beg_auth_comp_id
_struct_ncs_dom_lim.end_auth_comp_id
RCSB
Y
RCSB
2006-06-01
REL
REL
MPD
(4S)-2-METHYL-2,4-PENTANEDIOL
HOH
water
2TRX
pdb entry 2TRX
PDB
experimental model
MPD
501
2
MPD
MPD
501
A
MPD
502
2
MPD
MPD
502
A
HOH
1
3
HOH
HOH
503
A
HOH
3
3
HOH
HOH
504
A
HOH
4
3
HOH
HOH
505
A
HOH
5
3
HOH
HOH
506
A
HOH
6
3
HOH
HOH
507
A
HOH
7
3
HOH
HOH
508
A
HOH
10
3
HOH
HOH
509
A
HOH
11
3
HOH
HOH
510
A
HOH
12
3
HOH
HOH
511
A
HOH
13
3
HOH
HOH
512
A
HOH
14
3
HOH
HOH
513
A
HOH
15
3
HOH
HOH
514
A
HOH
17
3
HOH
HOH
515
A
HOH
18
3
HOH
HOH
516
A
HOH
19
3
HOH
HOH
517
A
HOH
21
3
HOH
HOH
518
A
HOH
22
3
HOH
HOH
519
A
HOH
23
3
HOH
HOH
520
A
HOH
24
3
HOH
HOH
521
A
HOH
25
3
HOH
HOH
522
A
HOH
26
3
HOH
HOH
523
A
HOH
27
3
HOH
HOH
524
A
HOH
28
3
HOH
HOH
525
A
HOH
29
3
HOH
HOH
526
A
HOH
30
3
HOH
HOH
527
A
HOH
31
3
HOH
HOH
528
A
HOH
32
3
HOH
HOH
529
A
HOH
34
3
HOH
HOH
530
A
HOH
35
3
HOH
HOH
531
A
HOH
37
3
HOH
HOH
532
A
HOH
39
3
HOH
HOH
533
A
HOH
42
3
HOH
HOH
534
A
HOH
43
3
HOH
HOH
535
A
HOH
44
3
HOH
HOH
536
A
HOH
46
3
HOH
HOH
537
A
HOH
49
3
HOH
HOH
538
A
HOH
50
3
HOH
HOH
539
A
HOH
52
3
HOH
HOH
540
A
HOH
53
3
HOH
HOH
541
A
HOH
60
3
HOH
HOH
542
A
HOH
62
3
HOH
HOH
543
A
HOH
64
3
HOH
HOH
544
A
HOH
66
3
HOH
HOH
545
A
HOH
69
3
HOH
HOH
546
A
HOH
70
3
HOH
HOH
547
A
HOH
71
3
HOH
HOH
548
A
HOH
73
3
HOH
HOH
549
A
HOH
74
3
HOH
HOH
550
A
HOH
75
3
HOH
HOH
551
A
HOH
76
3
HOH
HOH
552
A
HOH
77
3
HOH
HOH
553
A
HOH
78
3
HOH
HOH
554
A
HOH
80
3
HOH
HOH
555
A
HOH
82
3
HOH
HOH
556
A
HOH
2
3
HOH
HOH
109
B
HOH
8
3
HOH
HOH
110
B
HOH
9
3
HOH
HOH
111
B
HOH
16
3
HOH
HOH
112
B
HOH
20
3
HOH
HOH
113
B
HOH
33
3
HOH
HOH
114
B
HOH
38
3
HOH
HOH
115
B
HOH
40
3
HOH
HOH
116
B
HOH
41
3
HOH
HOH
117
B
HOH
45
3
HOH
HOH
118
B
HOH
47
3
HOH
HOH
119
B
HOH
48
3
HOH
HOH
120
B
HOH
54
3
HOH
HOH
121
B
HOH
55
3
HOH
HOH
122
B
HOH
56
3
HOH
HOH
123
B
HOH
57
3
HOH
HOH
124
B
HOH
58
3
HOH
HOH
125
B
HOH
59
3
HOH
HOH
126
B
HOH
61
3
HOH
HOH
127
B
HOH
63
3
HOH
HOH
128
B
HOH
65
3
HOH
HOH
129
B
HOH
67
3
HOH
HOH
130
B
HOH
68
3
HOH
HOH
131
B
HOH
72
3
HOH
HOH
132
B
HOH
79
3
HOH
HOH
133
B
SER
1
n
1
SER
1
A
ASP
2
n
2
ASP
2
A
LYS
3
n
3
LYS
3
A
ILE
4
n
4
ILE
4
A
ILE
5
n
5
ILE
5
A
HIS
6
n
6
HIS
6
A
LEU
7
n
7
LEU
7
A
THR
8
n
8
THR
8
A
ASP
9
n
9
ASP
9
A
ASP
10
n
10
ASP
10
A
SER
11
n
11
SER
11
A
PHE
12
n
12
PHE
12
A
ASP
13
n
13
ASP
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
VAL
16
n
16
VAL
16
A
LEU
17
n
17
LEU
17
A
LYS
18
n
18
LYS
18
A
ALA
19
n
19
ALA
19
A
ASP
20
n
20
ASP
20
A
GLY
21
n
21
GLY
21
A
ALA
22
n
22
ALA
22
A
ILE
23
n
23
ILE
23
A
LEU
24
n
24
LEU
24
A
VAL
25
n
25
VAL
25
A
ASP
26
n
26
ASP
26
A
PHE
27
n
27
PHE
27
A
TRP
28
n
28
TRP
28
A
ALA
29
n
29
ALA
29
A
GLU
30
n
30
GLU
30
A
TRP
31
n
31
TRP
31
A
CYS
32
n
32
CYS
32
A
GLY
33
n
33
GLY
33
A
PRO
34
n
34
PRO
34
A
CYS
35
n
35
CYS
35
A
LYS
36
n
36
LYS
36
A
MET
37
n
37
MET
37
A
ILE
38
n
38
ILE
38
A
ALA
39
n
39
ALA
39
A
PRO
40
n
40
PRO
40
A
ILE
41
n
41
ILE
41
A
LEU
42
n
42
LEU
42
A
GLU
43
n
43
GLU
43
A
GLU
44
n
44
GLU
44
A
ILE
45
n
45
ILE
45
A
ALA
46
n
46
ALA
46
A
ASP
47
n
47
ASP
47
A
GLU
48
n
48
GLU
48
A
TYR
49
n
49
TYR
49
A
GLN
50
n
50
GLN
50
A
GLY
51
n
51
GLY
51
A
LYS
52
n
52
LYS
52
A
LEU
53
n
53
LEU
53
A
THR
54
n
54
THR
54
A
VAL
55
n
55
VAL
55
A
ALA
56
n
56
ALA
56
A
LYS
57
n
57
LYS
57
A
LEU
58
n
58
LEU
58
A
ASN
59
n
59
ASN
59
A
ILE
60
n
60
ILE
60
A
ASP
61
n
61
ASP
61
A
GLN
62
n
62
GLN
62
A
ASN
63
n
63
ASN
63
A
PRO
64
n
64
PRO
64
A
GLY
65
n
65
GLY
65
A
THR
66
n
66
THR
66
A
ALA
67
n
67
ALA
67
A
PRO
68
n
68
PRO
68
A
LYS
69
n
69
LYS
69
A
TYR
70
n
70
TYR
70
A
GLY
71
n
71
GLY
71
A
ILE
72
n
72
ILE
72
A
ARG
73
n
73
ARG
73
A
GLY
74
n
74
GLY
74
A
ILE
75
n
75
ILE
75
A
PRO
76
n
76
PRO
76
A
THR
77
n
77
THR
77
A
LEU
78
n
78
LEU
78
A
LEU
79
n
79
LEU
79
A
LEU
80
n
80
LEU
80
A
PHE
81
n
81
PHE
81
A
LYS
82
n
82
LYS
82
A
ASN
83
n
83
ASN
83
A
GLY
84
n
84
GLY
84
A
GLU
85
n
85
GLU
85
A
VAL
86
n
86
VAL
86
A
ALA
87
n
87
ALA
87
A
ALA
88
n
88
ALA
88
A
THR
89
n
89
THR
89
A
LYS
90
n
90
LYS
90
A
VAL
91
n
91
VAL
91
A
GLY
92
n
92
GLY
92
A
ALA
93
n
93
ALA
93
A
LEU
94
n
94
LEU
94
A
SER
95
n
95
SER
95
A
LYS
96
n
96
LYS
96
A
GLY
97
n
97
GLY
97
A
GLN
98
n
98
GLN
98
A
LEU
99
n
99
LEU
99
A
LYS
100
n
100
LYS
100
A
GLU
101
n
101
GLU
101
A
PHE
102
n
102
PHE
102
A
LEU
103
n
103
LEU
103
A
ASP
104
n
104
ASP
104
A
ALA
105
n
105
ALA
105
A
ASN
106
n
106
ASN
106
A
LEU
107
n
107
LEU
107
A
ALA
108
n
108
ALA
108
A
SER
1
n
1
SER
1
B
ASP
2
n
2
ASP
2
B
LYS
3
n
3
LYS
3
B
ILE
4
n
4
ILE
4
B
ILE
5
n
5
ILE
5
B
HIS
6
n
6
HIS
6
B
LEU
7
n
7
LEU
7
B
THR
8
n
8
THR
8
B
ASP
9
n
9
ASP
9
B
ASP
10
n
10
ASP
10
B
SER
11
n
11
SER
11
B
PHE
12
n
12
PHE
12
B
ASP
13
n
13
ASP
13
B
THR
14
n
14
THR
14
B
ASP
15
n
15
ASP
15
B
VAL
16
n
16
VAL
16
B
LEU
17
n
17
LEU
17
B
LYS
18
n
18
LYS
18
B
ALA
19
n
19
ALA
19
B
ASP
20
n
20
ASP
20
B
GLY
21
n
21
GLY
21
B
ALA
22
n
22
ALA
22
B
ILE
23
n
23
ILE
23
B
LEU
24
n
24
LEU
24
B
VAL
25
n
25
VAL
25
B
ASP
26
n
26
ASP
26
B
PHE
27
n
27
PHE
27
B
TRP
28
n
28
TRP
28
B
ALA
29
n
29
ALA
29
B
GLU
30
n
30
GLU
30
B
TRP
31
n
31
TRP
31
B
CYS
32
n
32
CYS
32
B
GLY
33
n
33
GLY
33
B
PRO
34
n
34
PRO
34
B
CYS
35
n
35
CYS
35
B
LYS
36
n
36
LYS
36
B
MET
37
n
37
MET
37
B
ILE
38
n
38
ILE
38
B
ALA
39
n
39
ALA
39
B
PRO
40
n
40
PRO
40
B
ILE
41
n
41
ILE
41
B
LEU
42
n
42
LEU
42
B
GLU
43
n
43
GLU
43
B
GLU
44
n
44
GLU
44
B
ILE
45
n
45
ILE
45
B
ALA
46
n
46
ALA
46
B
ASP
47
n
47
ASP
47
B
GLU
48
n
48
GLU
48
B
TYR
49
n
49
TYR
49
B
GLN
50
n
50
GLN
50
B
GLY
51
n
51
GLY
51
B
LYS
52
n
52
LYS
52
B
LEU
53
n
53
LEU
53
B
THR
54
n
54
THR
54
B
VAL
55
n
55
VAL
55
B
ALA
56
n
56
ALA
56
B
LYS
57
n
57
LYS
57
B
LEU
58
n
58
LEU
58
B
ASN
59
n
59
ASN
59
B
ILE
60
n
60
ILE
60
B
ASP
61
n
61
ASP
61
B
GLN
62
n
62
GLN
62
B
ASN
63
n
63
ASN
63
B
PRO
64
n
64
PRO
64
B
GLY
65
n
65
GLY
65
B
THR
66
n
66
THR
66
B
ALA
67
n
67
ALA
67
B
PRO
68
n
68
PRO
68
B
LYS
69
n
69
LYS
69
B
TYR
70
n
70
TYR
70
B
GLY
71
n
71
GLY
71
B
ILE
72
n
72
ILE
72
B
ARG
73
n
73
ARG
73
B
GLY
74
n
74
GLY
74
B
ILE
75
n
75
ILE
75
B
PRO
76
n
76
PRO
76
B
THR
77
n
77
THR
77
B
LEU
78
n
78
LEU
78
B
LEU
79
n
79
LEU
79
B
LEU
80
n
80
LEU
80
B
PHE
81
n
81
PHE
81
B
LYS
82
n
82
LYS
82
B
ASN
83
n
83
ASN
83
B
GLY
84
n
84
GLY
84
B
GLU
85
n
85
GLU
85
B
VAL
86
n
86
VAL
86
B
ALA
87
n
87
ALA
87
B
ALA
88
n
88
ALA
88
B
THR
89
n
89
THR
89
B
LYS
90
n
90
LYS
90
B
VAL
91
n
91
VAL
91
B
GLY
92
n
92
GLY
92
B
ALA
93
n
93
ALA
93
B
LEU
94
n
94
LEU
94
B
SER
95
n
95
SER
95
B
LYS
96
n
96
LYS
96
B
GLY
97
n
97
GLY
97
B
GLN
98
n
98
GLN
98
B
LEU
99
n
99
LEU
99
B
LYS
100
n
100
LYS
100
B
GLU
101
n
101
GLU
101
B
PHE
102
n
102
PHE
102
B
LEU
103
n
103
LEU
103
B
ASP
104
n
104
ASP
104
B
ALA
105
n
105
ALA
105
B
ASN
106
n
106
ASN
106
B
LEU
107
n
107
LEU
107
B
ALA
108
n
108
ALA
108
B
29.7427
0.9858
14.5229
19.0059
-8.3256
34.1337
-0.6891
-1.5240
1.0004
1.4774
-0.7133
1.2049
-1.7610
-1.9744
1.4024
0.1585
0.0039
0.1300
0.0787
-0.2794
0.2373
refined
-7.9780
-18.4950
3.9740
X-RAY DIFFRACTION
4.7010
-0.5097
1.4915
2.8325
0.4752
2.6416
0.3375
0.3298
0.0781
0.0206
-0.1693
0.2961
-0.0993
0.1582
-0.1682
0.0468
0.0457
0.0252
0.0649
-0.0697
0.1618
refined
-6.7100
-25.8060
-3.1980
X-RAY DIFFRACTION
4.5473
1.5301
2.4562
6.9606
-1.9925
9.5855
0.1215
-0.7160
0.2673
0.7958
-0.0911
0.2894
-0.2724
-0.2134
-0.0303
0.0863
-0.0029
0.1132
0.0940
-0.1370
0.2247
refined
-5.8950
-25.5160
8.2970
X-RAY DIFFRACTION
4.6664
-3.4462
0.4909
4.2483
-0.7819
1.3713
0.3643
0.8532
-0.5901
-0.5373
-0.3594
0.4935
0.0215
-0.2307
-0.0049
0.1157
0.0526
-0.0317
0.1582
-0.1319
0.1507
refined
-6.9210
-30.9990
-9.0990
X-RAY DIFFRACTION
7.4718
2.1607
-1.6091
5.1459
-1.6747
4.6688
0.2446
-0.2895
-0.5177
0.4067
-0.1512
0.1604
0.2831
0.0962
-0.0935
0.0881
0.0135
0.0833
0.0084
-0.0403
0.2555
refined
-1.7100
-35.1030
5.1330
X-RAY DIFFRACTION
18.5563
2.7830
-7.1802
11.0202
1.0000
4.1538
-0.3411
0.8661
-1.0683
-0.2164
0.1752
0.6958
-0.0021
-0.6993
0.1660
0.2038
0.0640
0.0076
0.1899
-0.2732
0.6036
refined
11.6980
-55.5340
-6.9330
X-RAY DIFFRACTION
4.3258
-3.1434
-0.0172
6.1039
-0.0657
0.0017
0.3239
0.8473
-0.7138
-0.4395
-0.2194
0.0582
0.2926
0.0919
-0.1044
0.1829
0.1009
0.0223
0.2744
-0.2215
0.3068
refined
8.3210
-45.4340
-7.6430
X-RAY DIFFRACTION
10.5505
-1.9577
-0.6665
7.9490
-1.3447
3.2711
0.0565
0.5923
-1.0180
-0.0763
0.1531
-0.0643
0.0598
0.1515
-0.2096
0.1856
0.1236
-0.0518
0.2296
-0.2768
0.2607
refined
11.7540
-47.9800
-6.1990
X-RAY DIFFRACTION
20.4574
-2.8582
-2.0276
9.6085
0.2501
1.0773
0.0646
-0.4484
-1.1268
1.0642
0.1976
-0.3254
0.3643
0.4343
-0.2622
0.3487
0.0880
-0.0491
0.1590
-0.2061
0.2439
refined
14.4020
-45.2770
1.3100
X-RAY DIFFRACTION
12.1982
-1.9592
-0.3813
9.4829
4.6222
5.5422
0.1794
0.8383
-0.4905
0.1454
-0.1853
-0.4159
-0.0323
0.2691
0.0059
0.2468
0.0266
0.1737
0.1974
-0.1229
0.2267
refined
17.4860
-36.2570
-5.4690
X-RAY DIFFRACTION
A
1
A
1
A
6
A
6
X-RAY DIFFRACTION
1
ALL
A
7
A
7
A
40
A
40
X-RAY DIFFRACTION
2
ALL
A
41
A
41
A
58
A
58
X-RAY DIFFRACTION
3
ALL
A
59
A
59
A
80
A
80
X-RAY DIFFRACTION
4
ALL
A
81
A
81
A
108
A
108
X-RAY DIFFRACTION
5
ALL
B
1
B
1
B
16
B
16
X-RAY DIFFRACTION
6
ALL
B
17
B
17
B
43
B
43
X-RAY DIFFRACTION
7
ALL
B
44
B
44
B
71
B
71
X-RAY DIFFRACTION
8
ALL
B
72
B
72
B
87
B
87
X-RAY DIFFRACTION
9
ALL
B
88
B
88
B
108
B
108
X-RAY DIFFRACTION
10
ALL
author_and_software_defined_assembly
PISA
1
monomeric
author_and_software_defined_assembly
PISA
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
N
ILE
5
A
N
ILE
5
A
O
VAL
55
A
O
VAL
55
A
O
LEU
58
A
O
LEU
58
A
N
ASP
26
A
N
ASP
26
A
N
ILE
23
A
N
ILE
23
A
O
PHE
81
A
O
PHE
81
A
N
LEU
80
A
N
LEU
80
A
O
ALA
87
A
O
ALA
87
B
N
ILE
5
B
N
ILE
5
B
O
LYS
57
B
O
LYS
57
B
O
THR
54
B
O
THR
54
B
N
LEU
24
B
N
LEU
24
B
N
ILE
23
B
N
ILE
23
B
O
PHE
81
B
O
PHE
81
B
N
LEU
80
B
N
LEU
80
B
O
ALA
87
B
O
ALA
87
1
A
GLN
50
-36.35
130.51
1
B
ASN
83
34.43
56.08
1
B
ASN
83
30.13
59.74
28.100
-3.366
-1.683
0.000
-3.366
0.000
5.049
0.943
0.911
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.278
0.2088
0.212
0.212
2.450
44.600
462
9672
9589
4.818
99.275
0.251
0.192
20.876
0.243
Random
LIKELY RESIDUAL
1
Throuhgout
MOLECULAR REPLACEMENT
0.497
0.307
0.800
0.800
1.400
pdb entry 2TRX
MAXIMUM LIKELIHOOD
MASK BULK SOLVENT
2.450
44.600
79
1740
16
0
1645
0.020
0.022
1745
1.731
1.991
2378
6.140
5.000
227
41.677
26.528
72
16.752
15.000
310
20.675
15.000
3
0.108
0.200
274
0.006
0.020
1285
0.243
0.200
772
0.313
0.200
1182
0.195
0.200
101
0.210
0.200
17
0.229
0.200
8
1.265
2.000
1130
1.929
3.000
1760
1.415
2.000
708
1.976
3.000
611
1
B
1
425
X-RAY DIFFRACTION
0.190
TIGHT POSITIONAL
0.050
1
B
1
351
X-RAY DIFFRACTION
0.600
LOOSE POSITIONAL
5.000
1
B
1
425
X-RAY DIFFRACTION
0.570
TIGHT THERMAL
0.500
1
B
1
351
X-RAY DIFFRACTION
2.090
LOOSE THERMAL
10.000
0.341
0.241
0.248
2.514
50
667
717
20
100.000
0.339
0.27
0.273
2.582
31
645
676
20
100.000
0.269
0.261
0.262
2.657
36
638
674
20
100.000
0.379
0.244
0.251
2.738
33
604
637
20
100.000
0.321
0.251
0.255
2.828
26
605
632
20
99.842
0.352
0.246
0.251
2.927
34
577
613
20
99.674
0.301
0.265
0.267
3.036
28
562
600
20
98.333
0.255
0.232
0.233
3.160
26
513
543
20
99.263
0.312
0.21
0.214
3.300
25
514
551
20
97.822
0.266
0.229
0.230
3.460
18
506
528
20
99.242
0.26
0.205
0.208
3.646
20
468
496
20
98.387
0.26
0.195
0.199
3.865
25
444
476
20
98.529
0.232
0.183
0.186
4.130
24
427
454
20
99.339
0.25
0.159
0.162
4.458
17
392
412
20
99.272
0.158
0.171
0.170
4.878
15
359
374
20
100.000
0.318
0.171
0.178
5.446
17
335
352
20
100.000
0.277
0.197
0.200
6.273
12
298
310
20
100.000
0.256
0.216
0.218
7.645
10
259
269
20
100.000
0.252
0.149
0.154
10.656
11
202
214
20
99.533
0.576
0.316
0.321
44.600
4
112
131
20
88.550
49.495
2.45
44.60
2H73
9672
9672
0.0319
1
22.19
9.43
99.9
2.45
2.5
3.93
574
0.2322
1
8.26
100.0
data scaling
http://www.bruker-axs.de/index.html
SAINT
package
phasing
A. Vagin
alexei@ysbl.york.ac.uk
Fortran
http://www.ccp4.ac.uk/dist/html/molrep.html
MOLREP
program
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
24/04/2001
Fortran
http://www.ccp4.ac.uk/main.html
REFMAC
program
refmac_5.2.0019
data extraction
PDB
sw-help@rcsb.rutgers.edu
July 20, 2005
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
1.700
data reduction
PROTEUM PLUS
2
data scaling
SADABS
data reduction
XPREP
model building
Coot
model building
MolProbity
Crystal Structure of Thioredoxin Mutant D43E in Hexagonal (p61) Space Group
1
N
N
1
N
N
2
N
N
2
N
N
3
N
N
3
N
N
A
SER
11
A
SER
11
HELX_P
A
VAL
16
A
VAL
16
1
1
6
A
CYS
32
A
CYS
32
HELX_P
A
TYR
49
A
TYR
49
1
2
18
A
GLY
65
A
GLY
65
HELX_P
A
TYR
70
A
TYR
70
1
3
6
A
SER
95
A
SER
95
HELX_P
A
ALA
108
A
ALA
108
1
4
14
B
SER
11
B
SER
11
HELX_P
B
VAL
16
B
VAL
16
1
5
6
B
CYS
32
B
CYS
32
HELX_P
B
TYR
49
B
TYR
49
1
6
18
B
GLY
65
B
GLY
65
HELX_P
B
TYR
70
B
TYR
70
1
7
6
B
SER
95
B
SER
95
HELX_P
B
ALA
108
B
ALA
108
1
8
14
disulf
2.067
A
CYS
32
A
SG
CYS
32
1_555
A
CYS
35
A
SG
CYS
35
1_555
disulf
2.060
B
CYS
32
B
SG
CYS
32
1_555
B
CYS
35
B
SG
CYS
35
1_555
ELECTRON TRANSPORT
Alpha Beta, Electron transport
A
ILE
75
A
ILE
75
1
A
PRO
76
A
PRO
76
-0.44
B
ILE
75
B
ILE
75
1
B
PRO
76
B
PRO
76
-2.63
B
A
B
SER
1
B
SER
1
B
ALA
108
B
ALA
108
3
A
SER
1
A
SER
1
A
ALA
108
A
ALA
108
3
Q2M889_ECOLI
UNP
1
2
Q2M889
SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL
FKNGEVAATKVGALSKGQLKEFLDANLA
2
109
2H73
1
108
Q2M889
A
1
1
108
2
109
2H73
1
108
Q2M889
B
1
1
108
1
ASP
engineered mutation
GLU
43
2H73
A
Q2M889
UNP
44
43
2
ASP
engineered mutation
GLU
43
2H73
B
Q2M889
UNP
44
43
5
5
parallel
parallel
anti-parallel
anti-parallel
parallel
parallel
anti-parallel
anti-parallel
A
ILE
5
A
ILE
5
A
HIS
6
A
HIS
6
A
LEU
53
A
LEU
53
A
ASN
59
A
ASN
59
A
ALA
22
A
ALA
22
A
TRP
28
A
TRP
28
A
THR
77
A
THR
77
A
LYS
82
A
LYS
82
A
GLU
85
A
GLU
85
A
VAL
91
A
VAL
91
B
ILE
5
B
ILE
5
B
HIS
6
B
HIS
6
B
LEU
53
B
LEU
53
B
ASN
59
B
ASN
59
B
ALA
22
B
ALA
22
B
TRP
28
B
TRP
28
B
THR
77
B
THR
77
B
LYS
82
B
LYS
82
B
GLU
85
B
GLU
85
B
VAL
91
B
VAL
91
BINDING SITE FOR RESIDUE MPD A 501
A
MPD
501
Software
3
BINDING SITE FOR RESIDUE MPD A 502
A
MPD
502
Software
5
A
ILE
60
A
ILE
60
3
1_555
A
ARG
73
A
ARG
73
3
1_555
A
HOH
539
E
HOH
3
1_555
A
GLY
21
A
GLY
21
5
1_555
A
ALA
22
A
ALA
22
5
1_555
A
GLY
51
A
GLY
51
5
1_555
A
LEU
53
A
LEU
53
5
1_555
A
THR
54
A
THR
54
5
1_555
169
P 61