0.009710 0.005606 0.000000 0.000000 0.011212 0.000000 0.000000 0.000000 0.023560 0.00000 0.00000 0.00000 Gavira, J.A. Godoy-Ruiz, R. Ibarra-Molero, B. Sanchez-Ruiz, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120.00 102.991 102.991 42.445 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N O N 253 N C N 254 N C N 255 S C N 256 N O N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing To be Published 0353 Crystal Structure of Thioredoxin Mutant D43E in Hexagonal (p61) Space Group UK J.Mol.Biol. JMOBAK 0070 0022-2836 336 313 318 Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations. 2004 10.2210/pdb2h73/pdb pdb_00002h73 100 1 Montel Optics CCD BRUKER SMART 6000 Ni filter SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE OTHER 11701.413 Thioredoxin D43E 2 man polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 2 syn non-polymer 18.015 water 79 nat water no no SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILEEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample trxA 562 Escherichia coli 562 Escherichia coli JF521 plasmid pTk100 1 2.67 54.03 COUNTER-DIFFUSION 7 60% (v/v) MPD, Ac2Cu 1 mM, Hepes 15 mM pH 7.0, Counter-diffusion, temperature 277K 277 software database_2 exptl_crystal_grow struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model struct_ncs_dom_lim repository Initial release Version format compliance Advisory Version format compliance Structure summary Refinement description Database references Derived calculations Experimental preparation Data collection Refinement description 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 1 3 2012-05-02 1 4 2017-10-18 1 5 2021-10-20 1 6 2023-08-30 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _exptl_crystal_grow.method _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_ncs_dom_lim.beg_auth_comp_id _struct_ncs_dom_lim.end_auth_comp_id RCSB Y RCSB 2006-06-01 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 2TRX pdb entry 2TRX PDB experimental model MPD 501 2 MPD MPD 501 A MPD 502 2 MPD MPD 502 A HOH 1 3 HOH HOH 503 A HOH 3 3 HOH HOH 504 A HOH 4 3 HOH HOH 505 A HOH 5 3 HOH HOH 506 A HOH 6 3 HOH HOH 507 A HOH 7 3 HOH HOH 508 A HOH 10 3 HOH HOH 509 A HOH 11 3 HOH HOH 510 A HOH 12 3 HOH HOH 511 A HOH 13 3 HOH HOH 512 A HOH 14 3 HOH HOH 513 A HOH 15 3 HOH HOH 514 A HOH 17 3 HOH HOH 515 A HOH 18 3 HOH HOH 516 A HOH 19 3 HOH HOH 517 A HOH 21 3 HOH HOH 518 A HOH 22 3 HOH HOH 519 A HOH 23 3 HOH HOH 520 A HOH 24 3 HOH HOH 521 A HOH 25 3 HOH HOH 522 A HOH 26 3 HOH HOH 523 A HOH 27 3 HOH HOH 524 A HOH 28 3 HOH HOH 525 A HOH 29 3 HOH HOH 526 A HOH 30 3 HOH HOH 527 A HOH 31 3 HOH HOH 528 A HOH 32 3 HOH HOH 529 A HOH 34 3 HOH HOH 530 A HOH 35 3 HOH HOH 531 A HOH 37 3 HOH HOH 532 A HOH 39 3 HOH HOH 533 A HOH 42 3 HOH HOH 534 A HOH 43 3 HOH HOH 535 A HOH 44 3 HOH HOH 536 A HOH 46 3 HOH HOH 537 A HOH 49 3 HOH HOH 538 A HOH 50 3 HOH HOH 539 A HOH 52 3 HOH HOH 540 A HOH 53 3 HOH HOH 541 A HOH 60 3 HOH HOH 542 A HOH 62 3 HOH HOH 543 A HOH 64 3 HOH HOH 544 A HOH 66 3 HOH HOH 545 A HOH 69 3 HOH HOH 546 A HOH 70 3 HOH HOH 547 A HOH 71 3 HOH HOH 548 A HOH 73 3 HOH HOH 549 A HOH 74 3 HOH HOH 550 A HOH 75 3 HOH HOH 551 A HOH 76 3 HOH HOH 552 A HOH 77 3 HOH HOH 553 A HOH 78 3 HOH HOH 554 A HOH 80 3 HOH HOH 555 A HOH 82 3 HOH HOH 556 A HOH 2 3 HOH HOH 109 B HOH 8 3 HOH HOH 110 B HOH 9 3 HOH HOH 111 B HOH 16 3 HOH HOH 112 B HOH 20 3 HOH HOH 113 B HOH 33 3 HOH HOH 114 B HOH 38 3 HOH HOH 115 B HOH 40 3 HOH HOH 116 B HOH 41 3 HOH HOH 117 B HOH 45 3 HOH HOH 118 B HOH 47 3 HOH HOH 119 B HOH 48 3 HOH HOH 120 B HOH 54 3 HOH HOH 121 B HOH 55 3 HOH HOH 122 B HOH 56 3 HOH HOH 123 B HOH 57 3 HOH HOH 124 B HOH 58 3 HOH HOH 125 B HOH 59 3 HOH HOH 126 B HOH 61 3 HOH HOH 127 B HOH 63 3 HOH HOH 128 B HOH 65 3 HOH HOH 129 B HOH 67 3 HOH HOH 130 B HOH 68 3 HOH HOH 131 B HOH 72 3 HOH HOH 132 B HOH 79 3 HOH HOH 133 B SER 1 n 1 SER 1 A ASP 2 n 2 ASP 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A HIS 6 n 6 HIS 6 A LEU 7 n 7 LEU 7 A THR 8 n 8 THR 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A PHE 27 n 27 PHE 27 A TRP 28 n 28 TRP 28 A ALA 29 n 29 ALA 29 A GLU 30 n 30 GLU 30 A TRP 31 n 31 TRP 31 A CYS 32 n 32 CYS 32 A GLY 33 n 33 GLY 33 A PRO 34 n 34 PRO 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A MET 37 n 37 MET 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A PRO 40 n 40 PRO 40 A ILE 41 n 41 ILE 41 A LEU 42 n 42 LEU 42 A GLU 43 n 43 GLU 43 A GLU 44 n 44 GLU 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLN 62 n 62 GLN 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A ASN 83 n 83 ASN 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A ASN 106 n 106 ASN 106 A LEU 107 n 107 LEU 107 A ALA 108 n 108 ALA 108 A SER 1 n 1 SER 1 B ASP 2 n 2 ASP 2 B LYS 3 n 3 LYS 3 B ILE 4 n 4 ILE 4 B ILE 5 n 5 ILE 5 B HIS 6 n 6 HIS 6 B LEU 7 n 7 LEU 7 B THR 8 n 8 THR 8 B ASP 9 n 9 ASP 9 B ASP 10 n 10 ASP 10 B SER 11 n 11 SER 11 B PHE 12 n 12 PHE 12 B ASP 13 n 13 ASP 13 B THR 14 n 14 THR 14 B ASP 15 n 15 ASP 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B LYS 18 n 18 LYS 18 B ALA 19 n 19 ALA 19 B ASP 20 n 20 ASP 20 B GLY 21 n 21 GLY 21 B ALA 22 n 22 ALA 22 B ILE 23 n 23 ILE 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B ASP 26 n 26 ASP 26 B PHE 27 n 27 PHE 27 B TRP 28 n 28 TRP 28 B ALA 29 n 29 ALA 29 B GLU 30 n 30 GLU 30 B TRP 31 n 31 TRP 31 B CYS 32 n 32 CYS 32 B GLY 33 n 33 GLY 33 B PRO 34 n 34 PRO 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B MET 37 n 37 MET 37 B ILE 38 n 38 ILE 38 B ALA 39 n 39 ALA 39 B PRO 40 n 40 PRO 40 B ILE 41 n 41 ILE 41 B LEU 42 n 42 LEU 42 B GLU 43 n 43 GLU 43 B GLU 44 n 44 GLU 44 B ILE 45 n 45 ILE 45 B ALA 46 n 46 ALA 46 B ASP 47 n 47 ASP 47 B GLU 48 n 48 GLU 48 B TYR 49 n 49 TYR 49 B GLN 50 n 50 GLN 50 B GLY 51 n 51 GLY 51 B LYS 52 n 52 LYS 52 B LEU 53 n 53 LEU 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B ALA 56 n 56 ALA 56 B LYS 57 n 57 LYS 57 B LEU 58 n 58 LEU 58 B ASN 59 n 59 ASN 59 B ILE 60 n 60 ILE 60 B ASP 61 n 61 ASP 61 B GLN 62 n 62 GLN 62 B ASN 63 n 63 ASN 63 B PRO 64 n 64 PRO 64 B GLY 65 n 65 GLY 65 B THR 66 n 66 THR 66 B ALA 67 n 67 ALA 67 B PRO 68 n 68 PRO 68 B LYS 69 n 69 LYS 69 B TYR 70 n 70 TYR 70 B GLY 71 n 71 GLY 71 B ILE 72 n 72 ILE 72 B ARG 73 n 73 ARG 73 B GLY 74 n 74 GLY 74 B ILE 75 n 75 ILE 75 B PRO 76 n 76 PRO 76 B THR 77 n 77 THR 77 B LEU 78 n 78 LEU 78 B LEU 79 n 79 LEU 79 B LEU 80 n 80 LEU 80 B PHE 81 n 81 PHE 81 B LYS 82 n 82 LYS 82 B ASN 83 n 83 ASN 83 B GLY 84 n 84 GLY 84 B GLU 85 n 85 GLU 85 B VAL 86 n 86 VAL 86 B ALA 87 n 87 ALA 87 B ALA 88 n 88 ALA 88 B THR 89 n 89 THR 89 B LYS 90 n 90 LYS 90 B VAL 91 n 91 VAL 91 B GLY 92 n 92 GLY 92 B ALA 93 n 93 ALA 93 B LEU 94 n 94 LEU 94 B SER 95 n 95 SER 95 B LYS 96 n 96 LYS 96 B GLY 97 n 97 GLY 97 B GLN 98 n 98 GLN 98 B LEU 99 n 99 LEU 99 B LYS 100 n 100 LYS 100 B GLU 101 n 101 GLU 101 B PHE 102 n 102 PHE 102 B LEU 103 n 103 LEU 103 B ASP 104 n 104 ASP 104 B ALA 105 n 105 ALA 105 B ASN 106 n 106 ASN 106 B LEU 107 n 107 LEU 107 B ALA 108 n 108 ALA 108 B 29.7427 0.9858 14.5229 19.0059 -8.3256 34.1337 -0.6891 -1.5240 1.0004 1.4774 -0.7133 1.2049 -1.7610 -1.9744 1.4024 0.1585 0.0039 0.1300 0.0787 -0.2794 0.2373 refined -7.9780 -18.4950 3.9740 X-RAY DIFFRACTION 4.7010 -0.5097 1.4915 2.8325 0.4752 2.6416 0.3375 0.3298 0.0781 0.0206 -0.1693 0.2961 -0.0993 0.1582 -0.1682 0.0468 0.0457 0.0252 0.0649 -0.0697 0.1618 refined -6.7100 -25.8060 -3.1980 X-RAY DIFFRACTION 4.5473 1.5301 2.4562 6.9606 -1.9925 9.5855 0.1215 -0.7160 0.2673 0.7958 -0.0911 0.2894 -0.2724 -0.2134 -0.0303 0.0863 -0.0029 0.1132 0.0940 -0.1370 0.2247 refined -5.8950 -25.5160 8.2970 X-RAY DIFFRACTION 4.6664 -3.4462 0.4909 4.2483 -0.7819 1.3713 0.3643 0.8532 -0.5901 -0.5373 -0.3594 0.4935 0.0215 -0.2307 -0.0049 0.1157 0.0526 -0.0317 0.1582 -0.1319 0.1507 refined -6.9210 -30.9990 -9.0990 X-RAY DIFFRACTION 7.4718 2.1607 -1.6091 5.1459 -1.6747 4.6688 0.2446 -0.2895 -0.5177 0.4067 -0.1512 0.1604 0.2831 0.0962 -0.0935 0.0881 0.0135 0.0833 0.0084 -0.0403 0.2555 refined -1.7100 -35.1030 5.1330 X-RAY DIFFRACTION 18.5563 2.7830 -7.1802 11.0202 1.0000 4.1538 -0.3411 0.8661 -1.0683 -0.2164 0.1752 0.6958 -0.0021 -0.6993 0.1660 0.2038 0.0640 0.0076 0.1899 -0.2732 0.6036 refined 11.6980 -55.5340 -6.9330 X-RAY DIFFRACTION 4.3258 -3.1434 -0.0172 6.1039 -0.0657 0.0017 0.3239 0.8473 -0.7138 -0.4395 -0.2194 0.0582 0.2926 0.0919 -0.1044 0.1829 0.1009 0.0223 0.2744 -0.2215 0.3068 refined 8.3210 -45.4340 -7.6430 X-RAY DIFFRACTION 10.5505 -1.9577 -0.6665 7.9490 -1.3447 3.2711 0.0565 0.5923 -1.0180 -0.0763 0.1531 -0.0643 0.0598 0.1515 -0.2096 0.1856 0.1236 -0.0518 0.2296 -0.2768 0.2607 refined 11.7540 -47.9800 -6.1990 X-RAY DIFFRACTION 20.4574 -2.8582 -2.0276 9.6085 0.2501 1.0773 0.0646 -0.4484 -1.1268 1.0642 0.1976 -0.3254 0.3643 0.4343 -0.2622 0.3487 0.0880 -0.0491 0.1590 -0.2061 0.2439 refined 14.4020 -45.2770 1.3100 X-RAY DIFFRACTION 12.1982 -1.9592 -0.3813 9.4829 4.6222 5.5422 0.1794 0.8383 -0.4905 0.1454 -0.1853 -0.4159 -0.0323 0.2691 0.0059 0.2468 0.0266 0.1737 0.1974 -0.1229 0.2267 refined 17.4860 -36.2570 -5.4690 X-RAY DIFFRACTION A 1 A 1 A 6 A 6 X-RAY DIFFRACTION 1 ALL A 7 A 7 A 40 A 40 X-RAY DIFFRACTION 2 ALL A 41 A 41 A 58 A 58 X-RAY DIFFRACTION 3 ALL A 59 A 59 A 80 A 80 X-RAY DIFFRACTION 4 ALL A 81 A 81 A 108 A 108 X-RAY DIFFRACTION 5 ALL B 1 B 1 B 16 B 16 X-RAY DIFFRACTION 6 ALL B 17 B 17 B 43 B 43 X-RAY DIFFRACTION 7 ALL B 44 B 44 B 71 B 71 X-RAY DIFFRACTION 8 ALL B 72 B 72 B 87 B 87 X-RAY DIFFRACTION 9 ALL B 88 B 88 B 108 B 108 X-RAY DIFFRACTION 10 ALL author_and_software_defined_assembly PISA 1 monomeric author_and_software_defined_assembly PISA 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 5 A N ILE 5 A O VAL 55 A O VAL 55 A O LEU 58 A O LEU 58 A N ASP 26 A N ASP 26 A N ILE 23 A N ILE 23 A O PHE 81 A O PHE 81 A N LEU 80 A N LEU 80 A O ALA 87 A O ALA 87 B N ILE 5 B N ILE 5 B O LYS 57 B O LYS 57 B O THR 54 B O THR 54 B N LEU 24 B N LEU 24 B N ILE 23 B N ILE 23 B O PHE 81 B O PHE 81 B N LEU 80 B N LEU 80 B O ALA 87 B O ALA 87 1 A GLN 50 -36.35 130.51 1 B ASN 83 34.43 56.08 1 B ASN 83 30.13 59.74 28.100 -3.366 -1.683 0.000 -3.366 0.000 5.049 0.943 0.911 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.278 0.2088 0.212 0.212 2.450 44.600 462 9672 9589 4.818 99.275 0.251 0.192 20.876 0.243 Random LIKELY RESIDUAL 1 Throuhgout MOLECULAR REPLACEMENT 0.497 0.307 0.800 0.800 1.400 pdb entry 2TRX MAXIMUM LIKELIHOOD MASK BULK SOLVENT 2.450 44.600 79 1740 16 0 1645 0.020 0.022 1745 1.731 1.991 2378 6.140 5.000 227 41.677 26.528 72 16.752 15.000 310 20.675 15.000 3 0.108 0.200 274 0.006 0.020 1285 0.243 0.200 772 0.313 0.200 1182 0.195 0.200 101 0.210 0.200 17 0.229 0.200 8 1.265 2.000 1130 1.929 3.000 1760 1.415 2.000 708 1.976 3.000 611 1 B 1 425 X-RAY DIFFRACTION 0.190 TIGHT POSITIONAL 0.050 1 B 1 351 X-RAY DIFFRACTION 0.600 LOOSE POSITIONAL 5.000 1 B 1 425 X-RAY DIFFRACTION 0.570 TIGHT THERMAL 0.500 1 B 1 351 X-RAY DIFFRACTION 2.090 LOOSE THERMAL 10.000 0.341 0.241 0.248 2.514 50 667 717 20 100.000 0.339 0.27 0.273 2.582 31 645 676 20 100.000 0.269 0.261 0.262 2.657 36 638 674 20 100.000 0.379 0.244 0.251 2.738 33 604 637 20 100.000 0.321 0.251 0.255 2.828 26 605 632 20 99.842 0.352 0.246 0.251 2.927 34 577 613 20 99.674 0.301 0.265 0.267 3.036 28 562 600 20 98.333 0.255 0.232 0.233 3.160 26 513 543 20 99.263 0.312 0.21 0.214 3.300 25 514 551 20 97.822 0.266 0.229 0.230 3.460 18 506 528 20 99.242 0.26 0.205 0.208 3.646 20 468 496 20 98.387 0.26 0.195 0.199 3.865 25 444 476 20 98.529 0.232 0.183 0.186 4.130 24 427 454 20 99.339 0.25 0.159 0.162 4.458 17 392 412 20 99.272 0.158 0.171 0.170 4.878 15 359 374 20 100.000 0.318 0.171 0.178 5.446 17 335 352 20 100.000 0.277 0.197 0.200 6.273 12 298 310 20 100.000 0.256 0.216 0.218 7.645 10 259 269 20 100.000 0.252 0.149 0.154 10.656 11 202 214 20 99.533 0.576 0.316 0.321 44.600 4 112 131 20 88.550 49.495 2.45 44.60 2H73 9672 9672 0.0319 1 22.19 9.43 99.9 2.45 2.5 3.93 574 0.2322 1 8.26 100.0 data scaling http://www.bruker-axs.de/index.html SAINT package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Murshudov, G.N. ccp4@dl.ac.uk 24/04/2001 Fortran http://www.ccp4.ac.uk/main.html REFMAC program refmac_5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu July 20, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 data reduction PROTEUM PLUS 2 data scaling SADABS data reduction XPREP model building Coot model building MolProbity Crystal Structure of Thioredoxin Mutant D43E in Hexagonal (p61) Space Group 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A SER 11 A SER 11 HELX_P A VAL 16 A VAL 16 1 1 6 A CYS 32 A CYS 32 HELX_P A TYR 49 A TYR 49 1 2 18 A GLY 65 A GLY 65 HELX_P A TYR 70 A TYR 70 1 3 6 A SER 95 A SER 95 HELX_P A ALA 108 A ALA 108 1 4 14 B SER 11 B SER 11 HELX_P B VAL 16 B VAL 16 1 5 6 B CYS 32 B CYS 32 HELX_P B TYR 49 B TYR 49 1 6 18 B GLY 65 B GLY 65 HELX_P B TYR 70 B TYR 70 1 7 6 B SER 95 B SER 95 HELX_P B ALA 108 B ALA 108 1 8 14 disulf 2.067 A CYS 32 A SG CYS 32 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.060 B CYS 32 B SG CYS 32 1_555 B CYS 35 B SG CYS 35 1_555 ELECTRON TRANSPORT Alpha Beta, Electron transport A ILE 75 A ILE 75 1 A PRO 76 A PRO 76 -0.44 B ILE 75 B ILE 75 1 B PRO 76 B PRO 76 -2.63 B A B SER 1 B SER 1 B ALA 108 B ALA 108 3 A SER 1 A SER 1 A ALA 108 A ALA 108 3 Q2M889_ECOLI UNP 1 2 Q2M889 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA 2 109 2H73 1 108 Q2M889 A 1 1 108 2 109 2H73 1 108 Q2M889 B 1 1 108 1 ASP engineered mutation GLU 43 2H73 A Q2M889 UNP 44 43 2 ASP engineered mutation GLU 43 2H73 B Q2M889 UNP 44 43 5 5 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A ILE 5 A ILE 5 A HIS 6 A HIS 6 A LEU 53 A LEU 53 A ASN 59 A ASN 59 A ALA 22 A ALA 22 A TRP 28 A TRP 28 A THR 77 A THR 77 A LYS 82 A LYS 82 A GLU 85 A GLU 85 A VAL 91 A VAL 91 B ILE 5 B ILE 5 B HIS 6 B HIS 6 B LEU 53 B LEU 53 B ASN 59 B ASN 59 B ALA 22 B ALA 22 B TRP 28 B TRP 28 B THR 77 B THR 77 B LYS 82 B LYS 82 B GLU 85 B GLU 85 B VAL 91 B VAL 91 BINDING SITE FOR RESIDUE MPD A 501 A MPD 501 Software 3 BINDING SITE FOR RESIDUE MPD A 502 A MPD 502 Software 5 A ILE 60 A ILE 60 3 1_555 A ARG 73 A ARG 73 3 1_555 A HOH 539 E HOH 3 1_555 A GLY 21 A GLY 21 5 1_555 A ALA 22 A ALA 22 5 1_555 A GLY 51 A GLY 51 5 1_555 A LEU 53 A LEU 53 5 1_555 A THR 54 A THR 54 5 1_555 169 P 61