0.00966 0.00558 0.00000 0.00000 0.01116 0.00000 0.00000 0.00000 0.02393 0.00000 0.00000 0.00000 Gavira, J.A. Godoy-Ruiz, R. Ibarra-Molero, B. Sanchez-Ruiz, J.M. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 12 90.00 90.00 120 103.497 103.497 41.780 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C6 H14 O2 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL non-polymer C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N C N 251 N C N 252 N O N 253 N C N 254 N C N 255 S C N 256 N O N 257 N C N 258 N H N 259 N H N 260 N H N 261 N H N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N N N 273 S C N 274 N C N 275 N O N 276 N C Y 277 N C Y 278 N C Y 279 N C Y 280 N C Y 281 N C Y 282 N C N 283 N O N 284 N H N 285 N H N 286 N H N 287 N H N 288 N H N 289 N H N 290 N H N 291 N H N 292 N H N 293 N H N 294 N H N 295 N N N 296 S C N 297 N C N 298 N O N 299 N C N 300 N C N 301 N C N 302 N O N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N N N 313 S C N 314 N C N 315 N O N 316 N C N 317 N O N 318 N O N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N H N 326 N N N 327 S C N 328 N C N 329 N O N 330 R C N 331 N O N 332 N C N 333 N O N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N H N 340 N H N 341 N H N 342 N H N 343 N N N 344 S C N 345 N C N 346 N O N 347 N C Y 348 N C Y 349 N C Y 350 N C Y 351 N N Y 352 N C Y 353 N C Y 354 N C Y 355 N C Y 356 N C N 357 N O N 358 N H N 359 N H N 360 N H N 361 N H N 362 N H N 363 N H N 364 N H N 365 N H N 366 N H N 367 N H N 368 N H N 369 N H N 370 N N N 371 S C N 372 N C N 373 N O N 374 N C Y 375 N C Y 376 N C Y 377 N C Y 378 N C Y 379 N C Y 380 N C N 381 N O N 382 N O N 383 N H N 384 N H N 385 N H N 386 N H N 387 N H N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N N N 395 S C N 396 N C N 397 N O N 398 N C N 399 N C N 400 N C N 401 N O N 402 N H N 403 N H N 404 N H N 405 N H N 406 N H N 407 N H N 408 N H N 409 N H N 410 N H N 411 N H N 412 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N doub N 265 N sing N 266 N sing N 267 N sing N 268 N sing Y 269 N doub Y 270 N sing Y 271 N sing N 272 N sing Y 273 N doub N 274 N sing Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing N 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N doub N 288 N sing N 289 N sing N 290 N sing N 291 N sing N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N doub N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N doub N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing Y 338 N doub Y 339 N sing Y 340 N sing N 341 N sing Y 342 N doub Y 343 N sing Y 344 N sing N 345 N sing Y 346 N sing Y 347 N doub N 348 N sing Y 349 N doub N 350 N sing Y 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N sing N 358 N sing N 359 N sing N 360 N sing N 361 N doub N 362 N sing N 363 N sing N 364 N sing N 365 N sing Y 366 N doub Y 367 N sing Y 368 N sing N 369 N sing Y 370 N doub N 371 N sing Y 372 N doub N 373 N sing Y 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing N 384 N sing N 385 N doub N 386 N sing N 387 N sing N 388 N sing N 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing To be Published 0353 Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group UK J.Mol.Biol. JMOBAK 0070 0022-2836 336 313 318 Relation between protein stability, evolution and structure, as probed by carboxylic acid mutations. 2004 10.2210/pdb2h74/pdb pdb_00002h74 100 1 Montel Optics CCD BRUKER SMART 6000 Ni filter SINGLE WAVELENGTH M x-ray 1 1.5418 1.0 1.5418 ROTATING ANODE OTHER 11701.413 Thioredoxin D2E 2 man polymer 118.174 (4S)-2-METHYL-2,4-PENTANEDIOL 2 syn non-polymer 18.015 water 60 nat water no no SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA SEKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA A,B polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Escherichia Escherichia sample trxA 562 Escherichia coli 562 Escherichia coli JF521 plasmid pTk100 1 2.66 53.76 COUNTER-DIFFUSION 3.5 60% (v/v) MPD, AcNa 15 mM pH3.5, Ac2Cu 1 mM, Counter-diffusion, temperature 277K 277 software database_2 exptl_crystal_grow struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Advisory Version format compliance Structure summary Refinement description Database references Derived calculations Experimental preparation Data collection Refinement description 1 0 2007-05-15 1 1 2008-05-01 1 2 2011-07-13 1 3 2012-05-02 1 4 2017-10-18 1 5 2021-10-20 1 6 2023-08-30 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _exptl_crystal_grow.method _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id RCSB Y RCSB 2006-06-01 REL REL MPD (4S)-2-METHYL-2,4-PENTANEDIOL HOH water 2TRX PDB entry 2TRX PDB experimental model MPD 501 2 MPD MPD 501 A MPD 502 2 MPD MPD 502 A HOH 1 3 HOH HOH 503 A HOH 2 3 HOH HOH 504 A HOH 3 3 HOH HOH 505 A HOH 4 3 HOH HOH 506 A HOH 5 3 HOH HOH 507 A HOH 6 3 HOH HOH 508 A HOH 7 3 HOH HOH 509 A HOH 11 3 HOH HOH 510 A HOH 12 3 HOH HOH 511 A HOH 13 3 HOH HOH 512 A HOH 15 3 HOH HOH 513 A HOH 16 3 HOH HOH 514 A HOH 17 3 HOH HOH 515 A HOH 19 3 HOH HOH 516 A HOH 21 3 HOH HOH 517 A HOH 22 3 HOH HOH 518 A HOH 27 3 HOH HOH 519 A HOH 29 3 HOH HOH 520 A HOH 33 3 HOH HOH 521 A HOH 38 3 HOH HOH 522 A HOH 39 3 HOH HOH 523 A HOH 43 3 HOH HOH 524 A HOH 46 3 HOH HOH 525 A HOH 47 3 HOH HOH 526 A HOH 48 3 HOH HOH 527 A HOH 49 3 HOH HOH 528 A HOH 52 3 HOH HOH 529 A HOH 53 3 HOH HOH 530 A HOH 55 3 HOH HOH 531 A HOH 56 3 HOH HOH 532 A HOH 57 3 HOH HOH 533 A HOH 58 3 HOH HOH 534 A HOH 59 3 HOH HOH 535 A HOH 60 3 HOH HOH 536 A HOH 8 3 HOH HOH 109 B HOH 9 3 HOH HOH 110 B HOH 10 3 HOH HOH 111 B HOH 14 3 HOH HOH 112 B HOH 18 3 HOH HOH 113 B HOH 20 3 HOH HOH 114 B HOH 23 3 HOH HOH 115 B HOH 24 3 HOH HOH 116 B HOH 25 3 HOH HOH 117 B HOH 26 3 HOH HOH 118 B HOH 28 3 HOH HOH 119 B HOH 30 3 HOH HOH 120 B HOH 31 3 HOH HOH 121 B HOH 32 3 HOH HOH 122 B HOH 34 3 HOH HOH 123 B HOH 35 3 HOH HOH 124 B HOH 36 3 HOH HOH 125 B HOH 37 3 HOH HOH 126 B HOH 40 3 HOH HOH 127 B HOH 41 3 HOH HOH 128 B HOH 45 3 HOH HOH 129 B HOH 50 3 HOH HOH 130 B HOH 51 3 HOH HOH 131 B HOH 61 3 HOH HOH 132 B HOH 62 3 HOH HOH 133 B HOH 63 3 HOH HOH 134 B SER 1 n 1 SER 1 A GLU 2 n 2 GLU 2 A LYS 3 n 3 LYS 3 A ILE 4 n 4 ILE 4 A ILE 5 n 5 ILE 5 A HIS 6 n 6 HIS 6 A LEU 7 n 7 LEU 7 A THR 8 n 8 THR 8 A ASP 9 n 9 ASP 9 A ASP 10 n 10 ASP 10 A SER 11 n 11 SER 11 A PHE 12 n 12 PHE 12 A ASP 13 n 13 ASP 13 A THR 14 n 14 THR 14 A ASP 15 n 15 ASP 15 A VAL 16 n 16 VAL 16 A LEU 17 n 17 LEU 17 A LYS 18 n 18 LYS 18 A ALA 19 n 19 ALA 19 A ASP 20 n 20 ASP 20 A GLY 21 n 21 GLY 21 A ALA 22 n 22 ALA 22 A ILE 23 n 23 ILE 23 A LEU 24 n 24 LEU 24 A VAL 25 n 25 VAL 25 A ASP 26 n 26 ASP 26 A PHE 27 n 27 PHE 27 A TRP 28 n 28 TRP 28 A ALA 29 n 29 ALA 29 A GLU 30 n 30 GLU 30 A TRP 31 n 31 TRP 31 A CYS 32 n 32 CYS 32 A GLY 33 n 33 GLY 33 A PRO 34 n 34 PRO 34 A CYS 35 n 35 CYS 35 A LYS 36 n 36 LYS 36 A MET 37 n 37 MET 37 A ILE 38 n 38 ILE 38 A ALA 39 n 39 ALA 39 A PRO 40 n 40 PRO 40 A ILE 41 n 41 ILE 41 A LEU 42 n 42 LEU 42 A ASP 43 n 43 ASP 43 A GLU 44 n 44 GLU 44 A ILE 45 n 45 ILE 45 A ALA 46 n 46 ALA 46 A ASP 47 n 47 ASP 47 A GLU 48 n 48 GLU 48 A TYR 49 n 49 TYR 49 A GLN 50 n 50 GLN 50 A GLY 51 n 51 GLY 51 A LYS 52 n 52 LYS 52 A LEU 53 n 53 LEU 53 A THR 54 n 54 THR 54 A VAL 55 n 55 VAL 55 A ALA 56 n 56 ALA 56 A LYS 57 n 57 LYS 57 A LEU 58 n 58 LEU 58 A ASN 59 n 59 ASN 59 A ILE 60 n 60 ILE 60 A ASP 61 n 61 ASP 61 A GLN 62 n 62 GLN 62 A ASN 63 n 63 ASN 63 A PRO 64 n 64 PRO 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ALA 67 n 67 ALA 67 A PRO 68 n 68 PRO 68 A LYS 69 n 69 LYS 69 A TYR 70 n 70 TYR 70 A GLY 71 n 71 GLY 71 A ILE 72 n 72 ILE 72 A ARG 73 n 73 ARG 73 A GLY 74 n 74 GLY 74 A ILE 75 n 75 ILE 75 A PRO 76 n 76 PRO 76 A THR 77 n 77 THR 77 A LEU 78 n 78 LEU 78 A LEU 79 n 79 LEU 79 A LEU 80 n 80 LEU 80 A PHE 81 n 81 PHE 81 A LYS 82 n 82 LYS 82 A ASN 83 n 83 ASN 83 A GLY 84 n 84 GLY 84 A GLU 85 n 85 GLU 85 A VAL 86 n 86 VAL 86 A ALA 87 n 87 ALA 87 A ALA 88 n 88 ALA 88 A THR 89 n 89 THR 89 A LYS 90 n 90 LYS 90 A VAL 91 n 91 VAL 91 A GLY 92 n 92 GLY 92 A ALA 93 n 93 ALA 93 A LEU 94 n 94 LEU 94 A SER 95 n 95 SER 95 A LYS 96 n 96 LYS 96 A GLY 97 n 97 GLY 97 A GLN 98 n 98 GLN 98 A LEU 99 n 99 LEU 99 A LYS 100 n 100 LYS 100 A GLU 101 n 101 GLU 101 A PHE 102 n 102 PHE 102 A LEU 103 n 103 LEU 103 A ASP 104 n 104 ASP 104 A ALA 105 n 105 ALA 105 A ASN 106 n 106 ASN 106 A LEU 107 n 107 LEU 107 A ALA 108 n 108 ALA 108 A SER 1 n 1 SER 1 B GLU 2 n 2 GLU 2 B LYS 3 n 3 LYS 3 B ILE 4 n 4 ILE 4 B ILE 5 n 5 ILE 5 B HIS 6 n 6 HIS 6 B LEU 7 n 7 LEU 7 B THR 8 n 8 THR 8 B ASP 9 n 9 ASP 9 B ASP 10 n 10 ASP 10 B SER 11 n 11 SER 11 B PHE 12 n 12 PHE 12 B ASP 13 n 13 ASP 13 B THR 14 n 14 THR 14 B ASP 15 n 15 ASP 15 B VAL 16 n 16 VAL 16 B LEU 17 n 17 LEU 17 B LYS 18 n 18 LYS 18 B ALA 19 n 19 ALA 19 B ASP 20 n 20 ASP 20 B GLY 21 n 21 GLY 21 B ALA 22 n 22 ALA 22 B ILE 23 n 23 ILE 23 B LEU 24 n 24 LEU 24 B VAL 25 n 25 VAL 25 B ASP 26 n 26 ASP 26 B PHE 27 n 27 PHE 27 B TRP 28 n 28 TRP 28 B ALA 29 n 29 ALA 29 B GLU 30 n 30 GLU 30 B TRP 31 n 31 TRP 31 B CYS 32 n 32 CYS 32 B GLY 33 n 33 GLY 33 B PRO 34 n 34 PRO 34 B CYS 35 n 35 CYS 35 B LYS 36 n 36 LYS 36 B MET 37 n 37 MET 37 B ILE 38 n 38 ILE 38 B ALA 39 n 39 ALA 39 B PRO 40 n 40 PRO 40 B ILE 41 n 41 ILE 41 B LEU 42 n 42 LEU 42 B ASP 43 n 43 ASP 43 B GLU 44 n 44 GLU 44 B ILE 45 n 45 ILE 45 B ALA 46 n 46 ALA 46 B ASP 47 n 47 ASP 47 B GLU 48 n 48 GLU 48 B TYR 49 n 49 TYR 49 B GLN 50 n 50 GLN 50 B GLY 51 n 51 GLY 51 B LYS 52 n 52 LYS 52 B LEU 53 n 53 LEU 53 B THR 54 n 54 THR 54 B VAL 55 n 55 VAL 55 B ALA 56 n 56 ALA 56 B LYS 57 n 57 LYS 57 B LEU 58 n 58 LEU 58 B ASN 59 n 59 ASN 59 B ILE 60 n 60 ILE 60 B ASP 61 n 61 ASP 61 B GLN 62 n 62 GLN 62 B ASN 63 n 63 ASN 63 B PRO 64 n 64 PRO 64 B GLY 65 n 65 GLY 65 B THR 66 n 66 THR 66 B ALA 67 n 67 ALA 67 B PRO 68 n 68 PRO 68 B LYS 69 n 69 LYS 69 B TYR 70 n 70 TYR 70 B GLY 71 n 71 GLY 71 B ILE 72 n 72 ILE 72 B ARG 73 n 73 ARG 73 B GLY 74 n 74 GLY 74 B ILE 75 n 75 ILE 75 B PRO 76 n 76 PRO 76 B THR 77 n 77 THR 77 B LEU 78 n 78 LEU 78 B LEU 79 n 79 LEU 79 B LEU 80 n 80 LEU 80 B PHE 81 n 81 PHE 81 B LYS 82 n 82 LYS 82 B ASN 83 n 83 ASN 83 B GLY 84 n 84 GLY 84 B GLU 85 n 85 GLU 85 B VAL 86 n 86 VAL 86 B ALA 87 n 87 ALA 87 B ALA 88 n 88 ALA 88 B THR 89 n 89 THR 89 B LYS 90 n 90 LYS 90 B VAL 91 n 91 VAL 91 B GLY 92 n 92 GLY 92 B ALA 93 n 93 ALA 93 B LEU 94 n 94 LEU 94 B SER 95 n 95 SER 95 B LYS 96 n 96 LYS 96 B GLY 97 n 97 GLY 97 B GLN 98 n 98 GLN 98 B LEU 99 n 99 LEU 99 B LYS 100 n 100 LYS 100 B GLU 101 n 101 GLU 101 B PHE 102 n 102 PHE 102 B LEU 103 n 103 LEU 103 B ASP 104 n 104 ASP 104 B ALA 105 n 105 ALA 105 B ASN 106 n 106 ASN 106 B LEU 107 n 107 LEU 107 B ALA 108 n 108 ALA 108 B 17.9901 -3.8842 -2.9902 12.9911 0.4026 18.7709 -0.9414 -1.1508 -1.7917 2.1483 0.1228 -0.7274 0.4474 0.2017 0.8187 0.0585 -0.0003 -0.0666 -0.1537 0.2782 0.2699 refined 8.0323 18.8324 24.6024 X-RAY DIFFRACTION 4.4077 -2.6362 0.0133 8.0790 -1.9035 0.5526 0.1914 0.4999 -0.5814 -0.7159 -0.0949 0.5191 0.2196 -0.4230 -0.0964 -0.0916 -0.0592 -0.0785 -0.0492 -0.0551 0.0247 refined 0.4450 20.2019 13.1750 X-RAY DIFFRACTION 11.2031 -1.6697 -0.8818 1.8705 -0.1193 1.2037 -0.0387 0.0215 -0.7362 -0.1076 -0.0417 -0.2290 0.0671 0.0015 0.0803 -0.1869 0.0071 0.0032 -0.1745 0.0131 -0.0237 refined 5.8319 26.9396 18.2792 X-RAY DIFFRACTION 13.7896 1.0901 -5.1648 2.8677 -2.7664 11.2245 0.3450 -1.1009 -0.4322 0.7519 -0.3091 -1.2819 -0.6233 0.4533 -0.0359 -0.0997 -0.0364 -0.1353 -0.1081 0.0751 0.1253 refined 14.1672 29.6652 26.3249 X-RAY DIFFRACTION 7.9071 -1.2036 -5.3467 6.3903 4.6326 5.9648 0.3503 -0.5613 -0.8622 0.7588 -0.0636 -0.1907 0.0823 0.0539 -0.2868 -0.0644 -0.0203 -0.0876 -0.0930 0.1649 0.0689 refined 4.2011 24.8800 28.4759 X-RAY DIFFRACTION 11.6756 -3.6506 -1.1211 4.0340 0.9868 0.2476 0.1150 1.0490 -0.3375 -0.2420 0.0052 0.0296 0.0034 -0.1392 -0.1202 -0.0855 0.0090 0.0085 0.0120 0.0525 -0.1340 refined 6.8712 27.9574 9.2795 X-RAY DIFFRACTION 11.2444 -0.1309 0.2293 3.9151 1.1576 0.3487 0.1779 0.5548 0.0523 -0.1979 -0.1476 -0.2239 -0.2472 -0.1131 -0.0303 -0.1190 0.0077 -0.0521 -0.1503 0.0348 -0.0852 refined 4.1665 33.4748 17.4334 X-RAY DIFFRACTION 5.8950 2.6308 0.7736 6.1332 -1.0164 6.4869 -0.2317 0.2837 -0.1000 -0.0338 0.0587 0.1000 -0.1661 -0.2368 0.1730 -0.1869 0.0140 -0.0198 -0.1787 0.0268 -0.0925 refined -3.0841 33.5004 19.8481 X-RAY DIFFRACTION 6.9441 1.4340 -2.2342 4.9404 -1.5512 15.7968 0.0184 -0.7260 0.3467 0.4859 -0.1344 -0.7283 -0.2602 0.2444 0.1160 -0.0428 -0.0325 -0.1562 -0.1406 0.0126 0.0133 refined 8.1293 37.4694 28.3723 X-RAY DIFFRACTION 26.4897 -16.2059 3.1536 10.9563 1.8847 14.3378 0.1215 -1.4617 0.1215 1.1174 -0.0551 -0.1335 -0.6335 -0.7458 -0.0664 0.0239 -0.0344 -0.0020 -0.0863 0.0533 -0.0530 refined -2.2448 35.2230 30.1165 X-RAY DIFFRACTION 25.3382 23.2067 -14.1174 21.2544 -12.9297 7.8656 -0.6995 0.5682 2.9473 -2.9880 0.3056 -1.4038 -1.2267 -2.5372 0.3939 0.1085 0.2978 -0.0781 0.2301 0.6522 0.3819 refined -11.8267 51.4259 6.0737 X-RAY DIFFRACTION 13.8142 5.9901 0.0316 3.0293 1.7641 7.0948 -0.3054 -0.2826 2.2943 0.4029 0.3468 -0.5844 -0.7466 -0.4413 -0.0414 0.0966 0.0938 -0.0922 -0.0699 0.1294 0.5989 refined -11.8451 57.3716 18.4046 X-RAY DIFFRACTION 1.4267 -0.5705 0.7119 5.1909 -2.3595 1.3957 0.0323 -0.2711 0.1584 0.1082 0.3155 0.6763 -0.2095 -0.2124 -0.3478 0.0394 0.0559 -0.0635 0.0244 0.1721 0.1141 refined -16.7568 50.5544 17.4025 X-RAY DIFFRACTION 7.1298 2.5114 5.0446 14.0229 10.2560 9.0414 0.0570 0.7890 0.7550 -0.6276 0.0804 -0.8467 -0.5753 -0.1173 -0.1374 -0.1138 0.0224 0.0184 -0.0191 0.2191 0.0131 refined -0.5096 42.3074 12.1088 X-RAY DIFFRACTION 42.2904 -12.7339 4.5798 6.3800 -0.8558 0.6035 0.8563 1.6954 0.0386 -1.4166 -0.6980 0.6204 0.1510 -0.2976 -0.1584 0.0921 0.1450 -0.1933 0.3889 0.1746 -0.0856 refined -15.6186 41.7724 5.1223 X-RAY DIFFRACTION 12.0296 -1.7691 6.2481 5.1675 2.6262 5.8062 0.0690 0.3125 1.3772 -0.4629 -0.0793 -0.1876 -0.3997 -0.3722 0.0103 0.0092 0.0384 0.0073 -0.0294 0.2614 0.1735 refined -9.7156 49.5926 13.8081 X-RAY DIFFRACTION 24.2103 -0.1556 -7.6325 9.8975 4.9942 4.8772 -0.7190 -0.7576 1.0871 0.5337 0.3410 -0.0986 -0.4358 0.3620 0.3781 0.1162 0.1623 -0.0952 0.0115 0.0110 -0.0570 refined -6.8573 48.7128 25.9445 X-RAY DIFFRACTION 12.8410 -2.7489 -1.6633 7.8340 1.4693 0.5608 -0.5952 -0.0699 0.5958 0.7184 0.3738 0.5886 -0.3342 -0.1210 0.2214 0.0395 0.0577 -0.0446 -0.0914 0.1333 -0.0084 refined -15.9132 45.0809 21.4630 X-RAY DIFFRACTION 9.1346 -2.7625 2.6113 19.7312 2.2899 6.7637 0.2839 0.4617 -0.5713 -0.5142 0.1419 0.0462 0.1756 0.2693 -0.4258 -0.1081 -0.0243 -0.1327 -0.1581 0.0779 -0.0752 refined -12.0142 35.6494 14.9314 X-RAY DIFFRACTION 20.4981 3.3440 -2.0116 6.3507 -1.9755 9.2180 0.5800 0.0293 -0.7544 -0.6092 -0.0886 1.0299 -0.3060 -0.6157 -0.4914 -0.0467 0.0198 -0.1603 0.0039 0.0958 0.0368 refined -20.9117 36.1570 14.3292 X-RAY DIFFRACTION A 1 A 1 A 7 A 7 X-RAY DIFFRACTION 1 ALL A 8 A 8 A 16 A 16 X-RAY DIFFRACTION 2 ALL A 17 A 17 A 33 A 33 X-RAY DIFFRACTION 3 ALL A 34 A 34 A 45 A 45 X-RAY DIFFRACTION 4 ALL A 46 A 46 A 58 A 58 X-RAY DIFFRACTION 5 ALL A 59 A 59 A 72 A 72 X-RAY DIFFRACTION 6 ALL A 73 A 73 A 82 A 82 X-RAY DIFFRACTION 7 ALL A 83 A 83 A 90 A 90 X-RAY DIFFRACTION 8 ALL A 91 A 91 A 102 A 102 X-RAY DIFFRACTION 9 ALL A 103 A 103 A 108 A 108 X-RAY DIFFRACTION 10 ALL B 1 B 1 B 6 B 6 X-RAY DIFFRACTION 11 ALL B 7 B 7 B 16 B 16 X-RAY DIFFRACTION 12 ALL B 17 B 17 B 27 B 27 X-RAY DIFFRACTION 13 ALL B 28 B 28 B 38 B 38 X-RAY DIFFRACTION 14 ALL B 39 B 39 B 50 B 50 X-RAY DIFFRACTION 15 ALL B 51 B 51 B 63 B 63 X-RAY DIFFRACTION 16 ALL B 64 B 64 B 73 B 73 X-RAY DIFFRACTION 17 ALL B 74 B 74 B 89 B 89 X-RAY DIFFRACTION 18 ALL B 90 B 90 B 97 B 97 X-RAY DIFFRACTION 19 ALL B 98 B 98 B 108 B 108 X-RAY DIFFRACTION 20 ALL author_defined_assembly 1 monomeric author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A N ILE 5 A N ILE 5 A O VAL 55 A O VAL 55 A O THR 54 A O THR 54 A N LEU 24 A N LEU 24 A N ILE 23 A N ILE 23 A O PHE 81 A O PHE 81 A N LEU 80 A N LEU 80 A O ALA 87 A O ALA 87 B N ILE 5 B N ILE 5 B O LYS 57 B O LYS 57 B O LEU 58 B O LEU 58 B N ASP 26 B N ASP 26 B N PHE 27 B N PHE 27 B O THR 77 B O THR 77 B N LYS 82 B N LYS 82 B O GLU 85 B O GLU 85 1 A CG LYS 52 A CG LYS 52 1 Y 1 A CD LYS 52 A CD LYS 52 1 Y 1 A CE LYS 52 A CE LYS 52 1 Y 1 A NZ LYS 52 A NZ LYS 52 1 Y 1 A CE LYS 100 A CE LYS 100 1 Y 1 A NZ LYS 100 A NZ LYS 100 1 Y 1 B CD LYS 3 B CD LYS 3 1 Y 1 B CE LYS 3 B CE LYS 3 1 Y 1 B NZ LYS 3 B NZ LYS 3 1 Y 1 B CD LYS 69 B CD LYS 69 1 Y 1 B CE LYS 69 B CE LYS 69 1 Y 1 B NZ LYS 69 B NZ LYS 69 1 Y 1 B CZ ARG 73 B CZ ARG 73 1 Y 1 B NH1 ARG 73 B NH1 ARG 73 1 Y 1 B NH2 ARG 73 B NH2 ARG 73 1 Y 1 B NZ LYS 82 B NZ LYS 82 1 Y 1 A C4 MPD 501 WRONG HAND 1 B B CB CG LYS LYS 3 3 0.168 0.027 1.521 1.689 B B N 1 B LYS 3 B -149.56 10.24 20.845 -2.785 -1.392 0.000 -2.785 0.000 4.177 0.945 0.920 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 0.2575 0.2007 0.206 0.206 2.400 44.820 1014 10198 10162 9.978 99.471 0.230 0.186 18.311 0.217 Random LIKELY RESIDUAL 1 THROUGHOUT MOLECULAR REPLACEMENT 0.462 0.282 0.800 0.800 1.400 PDB entry 2TRX MAXIMUM LIKELIHOOD MASK BULK SOLVENT 2.400 44.820 60 1705 16 0 1629 0.029 0.022 1739 1.597 1.992 2365 6.908 5.000 224 36.013 27.101 69 16.221 15.000 301 4.366 15.000 1 0.094 0.200 274 0.005 0.020 1277 0.220 0.200 688 0.304 0.200 1143 0.204 0.200 77 0.214 0.200 28 0.161 0.200 7 1.270 2.000 1150 1.930 3.000 1775 1.226 2.000 684 1.789 3.000 588 0.376 0.238 0.254 2.462 82 663 763 20 97.641 0.392 0.242 0.258 2.529 72 642 714 20 100.000 0.383 0.246 0.259 2.603 76 645 723 20 99.723 0.31 0.22 0.230 2.682 69 578 652 20 99.233 0.305 0.25 0.256 2.770 77 613 690 20 100.000 0.363 0.225 0.239 2.867 67 569 637 20 99.843 0.347 0.24 0.249 2.975 60 562 622 20 100.000 0.264 0.205 0.210 3.095 52 546 598 20 100.000 0.224 0.19 0.193 3.232 62 523 586 20 99.829 0.231 0.2 0.204 3.389 62 484 546 20 100.000 0.215 0.188 0.191 3.571 50 477 528 20 99.811 0.251 0.174 0.183 3.787 55 444 502 20 99.402 0.237 0.172 0.178 4.046 39 417 458 20 99.563 0.178 0.157 0.159 4.367 40 410 450 20 100.000 0.237 0.148 0.157 4.779 42 359 401 20 100.000 0.249 0.181 0.185 5.336 26 351 377 20 100.000 0.254 0.234 0.236 6.147 31 294 325 20 100.000 0.252 0.23 0.232 7.493 28 254 282 20 100.000 0.17 0.185 0.184 10.452 17 207 225 20 99.556 0.179 0.338 0.327 44.820 7 110 137 20 85.401 49.79 2.40 44.82 2H74 10198 10198 0.0242 1 32.58 10.90 99.7 2.40 2.45 4.36 605 0.2876 1 5.89 97.9 data scaling http://www.bruker-axs.de/index.html SAINT package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP program refinement Murshudov, G.N. ccp4@dl.ac.uk 24/04/2001 Fortran http://www.ccp4.ac.uk/main.html REFMAC program refmac_5.2.0019 data extraction PDB sw-help@rcsb.rutgers.edu July 20, 2005 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 1.700 data reduction PROTEUM PLUS 2 data scaling SADABS data reduction XPREP model building Coot model building MolProbity Crystal Structure of Thioredoxin Mutant D2E in Hexagonal (p61) Space Group 1 N N 1 N N 2 N N 2 N N 3 N N 3 N N A SER 11 A SER 11 HELX_P A VAL 16 A VAL 16 1 1 6 A CYS 32 A CYS 32 HELX_P A TYR 49 A TYR 49 1 2 18 A THR 66 A THR 66 HELX_P A GLY 71 A GLY 71 5 3 6 A SER 95 A SER 95 HELX_P A ALA 108 A ALA 108 1 4 14 B SER 11 B SER 11 HELX_P B VAL 16 B VAL 16 1 5 6 B CYS 32 B CYS 32 HELX_P B TYR 49 B TYR 49 1 6 18 B GLY 65 B GLY 65 HELX_P B TYR 70 B TYR 70 1 7 6 B SER 95 B SER 95 HELX_P B LEU 107 B LEU 107 1 8 13 disulf 2.058 A CYS 32 A SG CYS 32 1_555 A CYS 35 A SG CYS 35 1_555 disulf 2.034 B CYS 32 B SG CYS 32 1_555 B CYS 35 B SG CYS 35 1_555 ELECTRON TRANSPORT Alpha Beta, Electron transport A ILE 75 A ILE 75 1 A PRO 76 A PRO 76 -1.86 B ILE 75 B ILE 75 1 B PRO 76 B PRO 76 1.81 Q2M889_ECOLI UNP 1 2 Q2M889 SDKIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLL FKNGEVAATKVGALSKGQLKEFLDANLA 2 109 2H74 1 108 Q2M889 A 1 1 108 2 109 2H74 1 108 Q2M889 B 1 1 108 1 ASP engineered mutation GLU 2 2H74 A Q2M889 UNP 3 2 2 ASP engineered mutation GLU 2 2H74 B Q2M889 UNP 3 2 5 5 parallel parallel anti-parallel anti-parallel parallel parallel anti-parallel anti-parallel A ILE 5 A ILE 5 A HIS 6 A HIS 6 A THR 54 A THR 54 A ASN 59 A ASN 59 A ALA 22 A ALA 22 A TRP 28 A TRP 28 A THR 77 A THR 77 A LYS 82 A LYS 82 A GLU 85 A GLU 85 A VAL 91 A VAL 91 B ILE 5 B ILE 5 B HIS 6 B HIS 6 B THR 54 B THR 54 B ASN 59 B ASN 59 B ALA 22 B ALA 22 B TRP 28 B TRP 28 B THR 77 B THR 77 B LYS 82 B LYS 82 B GLU 85 B GLU 85 B VAL 86 B VAL 86 BINDING SITE FOR RESIDUE MPD A 501 A MPD 501 Software 1 BINDING SITE FOR RESIDUE MPD A 502 A MPD 502 Software 4 A ARG 73 A ARG 73 1 1_555 A ASP 20 A ASP 20 4 1_555 A GLY 21 A GLY 21 4 1_555 A ALA 22 A ALA 22 4 1_555 A THR 54 A THR 54 4 1_555 169 P 61