0.005336 0.000000 0.001810 0.000000 0.016542 0.000000 0.000000 0.000000 0.017469 0.00000 0.00000 0.00000 Guo, L. Han, A. Bates, D.L. Chen, L. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 16 90.00 108.74 90.00 187.398 60.451 60.450 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N C N 48 N O N 49 N N N 50 N O N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N H N 59 N H N 60 N H N 61 N N N 62 S C N 63 N C N 64 N O N 65 N C N 66 N C N 67 N C N 68 N O N 69 N O N 70 N O N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N N N 81 N C N 82 N C N 83 N O N 84 N O N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N N N 91 S C N 92 N C N 93 N O N 94 N C Y 95 N C Y 96 N N Y 97 N C Y 98 N C Y 99 N N N 100 N O N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N N N 112 S C N 113 N C N 114 N O N 115 S C N 116 N C N 117 N C N 118 N C N 119 N O N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N H N 132 N H N 133 N N N 134 S C N 135 N C N 136 N O N 137 N C N 138 N C N 139 N C N 140 N C N 141 N O N 142 N H N 143 N H N 144 N H N 145 N H N 146 N H N 147 N H N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N N N 156 S C N 157 N C N 158 N O N 159 N C N 160 N C N 161 N C N 162 N C N 163 N N N 164 N O N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N N N 181 S C N 182 N C N 183 N O N 184 N C N 185 N C N 186 N S N 187 N C N 188 N O N 189 N H N 190 N H N 191 N H N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N N N 201 S C N 202 N C N 203 N O N 204 N C Y 205 N C Y 206 N C Y 207 N C Y 208 N C Y 209 N C Y 210 N C N 211 N O N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N N N 224 S C N 225 N C N 226 N O N 227 N C N 228 N C N 229 N C N 230 N O N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N H N 239 N H N 240 N N N 241 S C N 242 N C N 243 N O N 244 N C N 245 N O N 246 N O N 247 N H N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N N N 255 S C N 256 N C N 257 N O N 258 N C N 259 N C N 260 N C N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N H N 268 N H N 269 N H N 270 N H N 271 N H N 272 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N doub N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N sing N 62 N sing N 63 N sing N 64 N doub N 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N doub N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N doub N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N sing N 90 N sing N 91 N doub N 92 N sing N 93 N sing N 94 N sing N 95 N sing Y 96 N sing Y 97 N doub Y 98 N doub N 99 N sing Y 100 N sing N 101 N sing Y 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N doub N 113 N sing N 114 N sing N 115 N sing N 116 N sing N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N sing N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N doub N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N sing N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N doub N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N doub N 198 N sing N 199 N sing N 200 N sing N 201 N sing Y 202 N doub Y 203 N sing Y 204 N sing N 205 N sing Y 206 N doub N 207 N sing Y 208 N doub N 209 N sing Y 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N doub N 221 N sing N 222 N sing N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N doub N 238 N sing N 239 N sing N 240 N sing N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N sing N 250 N doub N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N sing N 260 N sing N 261 N sing US Proc.Natl.Acad.Sci.Usa PNASA6 0040 0027-8424 104 4297 4302 10.1073/pnas.0608041104 17360518 Crystal structure of a conserved N-terminal domain of histone deacetylase 4 reveals functional insights into glutamine-rich domains. 2007 10.2210/pdb2h8n/pdb pdb_00002h8n 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 100.0 1 CCD 2004-07-02 ADSC QUANTUM 315 SINGLE WAVELENGTH M x-ray 1 1.12710 1.0 8.2.2 ALS 1.12710 SYNCHROTRON ALS BEAMLINE 8.2.2 13653.348 Histone deacetylase 4 N-terminal glutamine-rich Domain, residues 62-129 4 man polymer HD4 no no GSSHHHHHHSSGLVPRGSHMAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAM KHQQELLEHQRKLERHRQEQELEKQHREQKLQ GSSHHHHHHSSGLVPRGSHMAEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAM KHQQELLEHQRKLERHRQEQELEKQHREQKLQ A,B,C,D polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample HDAC4, KIAA0288 9606 Homo sapiens 562 Escherichia coli Rosetta PlysS plasmid pET28a 1 2.939870 58.161419 THE REFLECTIONS IN THE STRUCTURE FACTOR FILE WERE SCALED TO 2.3A, THE STRUCTURE WAS REFINED TO 2.6A. ALTHOUGH THE DIFFRACTION WENT TO 2.3A, DUE TO SEVERE ANISOTROPIC EFFECT, USEFUL DATA WAS ONLY TO 2.6A. 7.50 0.825M LITHIUM SULFATE, 55mM HEPES PH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K, pH 7.50 291 chem_comp_atom chem_comp_bond database_2 struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references 1 0 2007-02-27 1 1 2008-05-01 1 2 2011-07-13 1 3 2024-02-14 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details RCSB Y RCSB 2006-06-07 REL REL n 1 42 A n 2 43 A n 3 44 A n 4 45 A n 5 46 A n 6 47 A n 7 48 A n 8 49 A n 9 50 A n 10 51 A n 11 52 A n 12 53 A n 13 54 A n 14 55 A n 15 56 A n 16 57 A n 17 58 A n 18 59 A n 19 60 A n 20 61 A ALA 62 n 21 ALA 62 A GLU 63 n 22 GLU 63 A PRO 64 n 23 PRO 64 A ALA 65 n 24 ALA 65 A LEU 66 n 25 LEU 66 A ARG 67 n 26 ARG 67 A GLU 68 n 27 GLU 68 A GLN 69 n 28 GLN 69 A GLN 70 n 29 GLN 70 A LEU 71 n 30 LEU 71 A GLN 72 n 31 GLN 72 A GLN 73 n 32 GLN 73 A GLU 74 n 33 GLU 74 A LEU 75 n 34 LEU 75 A LEU 76 n 35 LEU 76 A ALA 77 n 36 ALA 77 A LEU 78 n 37 LEU 78 A LYS 79 n 38 LYS 79 A GLN 80 n 39 GLN 80 A LYS 81 n 40 LYS 81 A GLN 82 n 41 GLN 82 A GLN 83 n 42 GLN 83 A ILE 84 n 43 ILE 84 A GLN 85 n 44 GLN 85 A ARG 86 n 45 ARG 86 A GLN 87 n 46 GLN 87 A ILE 88 n 47 ILE 88 A LEU 89 n 48 LEU 89 A ILE 90 n 49 ILE 90 A ALA 91 n 50 ALA 91 A GLU 92 n 51 GLU 92 A PHE 93 n 52 PHE 93 A GLN 94 n 53 GLN 94 A ARG 95 n 54 ARG 95 A GLN 96 n 55 GLN 96 A HIS 97 n 56 HIS 97 A GLU 98 n 57 GLU 98 A GLN 99 n 58 GLN 99 A LEU 100 n 59 LEU 100 A SER 101 n 60 SER 101 A ARG 102 n 61 ARG 102 A GLN 103 n 62 GLN 103 A HIS 104 n 63 HIS 104 A GLU 105 n 64 GLU 105 A ALA 106 n 65 ALA 106 A GLN 107 n 66 GLN 107 A LEU 108 n 67 LEU 108 A HIS 109 n 68 HIS 109 A GLU 110 n 69 GLU 110 A HIS 111 n 70 HIS 111 A ILE 112 n 71 ILE 112 A LYS 113 n 72 LYS 113 A GLN 114 n 73 GLN 114 A GLN 115 n 74 GLN 115 A GLN 116 n 75 GLN 116 A GLU 117 n 76 GLU 117 A MET 118 n 77 MET 118 A LEU 119 n 78 LEU 119 A ALA 120 n 79 ALA 120 A MET 121 n 80 MET 121 A LYS 122 n 81 LYS 122 A HIS 123 n 82 HIS 123 A GLN 124 n 83 GLN 124 A GLN 125 n 84 GLN 125 A GLU 126 n 85 GLU 126 A LEU 127 n 86 LEU 127 A LEU 128 n 87 LEU 128 A GLU 129 n 88 GLU 129 A n 89 130 A n 90 131 A n 91 132 A n 92 133 A n 93 134 A n 94 135 A n 95 136 A n 96 137 A n 97 138 A n 98 139 A n 99 140 A n 100 141 A n 101 142 A n 102 143 A n 103 144 A n 104 145 A n 105 146 A n 106 147 A n 107 148 A n 108 149 A n 109 150 A n 110 151 A n 111 152 A n 112 153 A n 1 42 B n 2 43 B n 3 44 B n 4 45 B n 5 46 B n 6 47 B n 7 48 B n 8 49 B n 9 50 B n 10 51 B n 11 52 B n 12 53 B n 13 54 B n 14 55 B n 15 56 B n 16 57 B n 17 58 B n 18 59 B n 19 60 B n 20 61 B ALA 62 n 21 ALA 62 B GLU 63 n 22 GLU 63 B PRO 64 n 23 PRO 64 B ALA 65 n 24 ALA 65 B LEU 66 n 25 LEU 66 B ARG 67 n 26 ARG 67 B GLU 68 n 27 GLU 68 B GLN 69 n 28 GLN 69 B GLN 70 n 29 GLN 70 B LEU 71 n 30 LEU 71 B GLN 72 n 31 GLN 72 B GLN 73 n 32 GLN 73 B GLU 74 n 33 GLU 74 B LEU 75 n 34 LEU 75 B LEU 76 n 35 LEU 76 B ALA 77 n 36 ALA 77 B LEU 78 n 37 LEU 78 B LYS 79 n 38 LYS 79 B GLN 80 n 39 GLN 80 B LYS 81 n 40 LYS 81 B GLN 82 n 41 GLN 82 B GLN 83 n 42 GLN 83 B ILE 84 n 43 ILE 84 B GLN 85 n 44 GLN 85 B ARG 86 n 45 ARG 86 B GLN 87 n 46 GLN 87 B ILE 88 n 47 ILE 88 B LEU 89 n 48 LEU 89 B ILE 90 n 49 ILE 90 B ALA 91 n 50 ALA 91 B GLU 92 n 51 GLU 92 B PHE 93 n 52 PHE 93 B GLN 94 n 53 GLN 94 B ARG 95 n 54 ARG 95 B GLN 96 n 55 GLN 96 B HIS 97 n 56 HIS 97 B GLU 98 n 57 GLU 98 B GLN 99 n 58 GLN 99 B LEU 100 n 59 LEU 100 B SER 101 n 60 SER 101 B ARG 102 n 61 ARG 102 B GLN 103 n 62 GLN 103 B HIS 104 n 63 HIS 104 B GLU 105 n 64 GLU 105 B ALA 106 n 65 ALA 106 B GLN 107 n 66 GLN 107 B LEU 108 n 67 LEU 108 B HIS 109 n 68 HIS 109 B GLU 110 n 69 GLU 110 B HIS 111 n 70 HIS 111 B ILE 112 n 71 ILE 112 B LYS 113 n 72 LYS 113 B GLN 114 n 73 GLN 114 B GLN 115 n 74 GLN 115 B GLN 116 n 75 GLN 116 B GLU 117 n 76 GLU 117 B MET 118 n 77 MET 118 B LEU 119 n 78 LEU 119 B ALA 120 n 79 ALA 120 B MET 121 n 80 MET 121 B LYS 122 n 81 LYS 122 B HIS 123 n 82 HIS 123 B GLN 124 n 83 GLN 124 B GLN 125 n 84 GLN 125 B GLU 126 n 85 GLU 126 B LEU 127 n 86 LEU 127 B LEU 128 n 87 LEU 128 B GLU 129 n 88 GLU 129 B n 89 130 B n 90 131 B n 91 132 B n 92 133 B n 93 134 B n 94 135 B n 95 136 B n 96 137 B n 97 138 B n 98 139 B n 99 140 B n 100 141 B n 101 142 B n 102 143 B n 103 144 B n 104 145 B n 105 146 B n 106 147 B n 107 148 B n 108 149 B n 109 150 B n 110 151 B n 111 152 B n 112 153 B n 1 42 C n 2 43 C n 3 44 C n 4 45 C n 5 46 C n 6 47 C n 7 48 C n 8 49 C n 9 50 C n 10 51 C n 11 52 C n 12 53 C n 13 54 C n 14 55 C n 15 56 C n 16 57 C n 17 58 C n 18 59 C n 19 60 C n 20 61 C ALA 62 n 21 ALA 62 C GLU 63 n 22 GLU 63 C PRO 64 n 23 PRO 64 C ALA 65 n 24 ALA 65 C LEU 66 n 25 LEU 66 C ARG 67 n 26 ARG 67 C GLU 68 n 27 GLU 68 C GLN 69 n 28 GLN 69 C GLN 70 n 29 GLN 70 C LEU 71 n 30 LEU 71 C GLN 72 n 31 GLN 72 C GLN 73 n 32 GLN 73 C GLU 74 n 33 GLU 74 C LEU 75 n 34 LEU 75 C LEU 76 n 35 LEU 76 C ALA 77 n 36 ALA 77 C LEU 78 n 37 LEU 78 C LYS 79 n 38 LYS 79 C GLN 80 n 39 GLN 80 C LYS 81 n 40 LYS 81 C GLN 82 n 41 GLN 82 C GLN 83 n 42 GLN 83 C ILE 84 n 43 ILE 84 C GLN 85 n 44 GLN 85 C ARG 86 n 45 ARG 86 C GLN 87 n 46 GLN 87 C ILE 88 n 47 ILE 88 C LEU 89 n 48 LEU 89 C ILE 90 n 49 ILE 90 C ALA 91 n 50 ALA 91 C GLU 92 n 51 GLU 92 C PHE 93 n 52 PHE 93 C GLN 94 n 53 GLN 94 C ARG 95 n 54 ARG 95 C GLN 96 n 55 GLN 96 C HIS 97 n 56 HIS 97 C GLU 98 n 57 GLU 98 C GLN 99 n 58 GLN 99 C LEU 100 n 59 LEU 100 C SER 101 n 60 SER 101 C ARG 102 n 61 ARG 102 C GLN 103 n 62 GLN 103 C HIS 104 n 63 HIS 104 C GLU 105 n 64 GLU 105 C ALA 106 n 65 ALA 106 C GLN 107 n 66 GLN 107 C LEU 108 n 67 LEU 108 C HIS 109 n 68 HIS 109 C GLU 110 n 69 GLU 110 C HIS 111 n 70 HIS 111 C ILE 112 n 71 ILE 112 C LYS 113 n 72 LYS 113 C GLN 114 n 73 GLN 114 C GLN 115 n 74 GLN 115 C GLN 116 n 75 GLN 116 C GLU 117 n 76 GLU 117 C MET 118 n 77 MET 118 C LEU 119 n 78 LEU 119 C ALA 120 n 79 ALA 120 C MET 121 n 80 MET 121 C LYS 122 n 81 LYS 122 C HIS 123 n 82 HIS 123 C GLN 124 n 83 GLN 124 C GLN 125 n 84 GLN 125 C GLU 126 n 85 GLU 126 C LEU 127 n 86 LEU 127 C LEU 128 n 87 LEU 128 C GLU 129 n 88 GLU 129 C n 89 130 C n 90 131 C n 91 132 C n 92 133 C n 93 134 C n 94 135 C n 95 136 C n 96 137 C n 97 138 C n 98 139 C n 99 140 C n 100 141 C n 101 142 C n 102 143 C n 103 144 C n 104 145 C n 105 146 C n 106 147 C n 107 148 C n 108 149 C n 109 150 C n 110 151 C n 111 152 C n 112 153 C n 1 42 D n 2 43 D n 3 44 D n 4 45 D n 5 46 D n 6 47 D n 7 48 D n 8 49 D n 9 50 D n 10 51 D n 11 52 D n 12 53 D n 13 54 D n 14 55 D n 15 56 D n 16 57 D n 17 58 D n 18 59 D n 19 60 D n 20 61 D ALA 62 n 21 ALA 62 D GLU 63 n 22 GLU 63 D PRO 64 n 23 PRO 64 D ALA 65 n 24 ALA 65 D LEU 66 n 25 LEU 66 D ARG 67 n 26 ARG 67 D GLU 68 n 27 GLU 68 D GLN 69 n 28 GLN 69 D GLN 70 n 29 GLN 70 D LEU 71 n 30 LEU 71 D GLN 72 n 31 GLN 72 D GLN 73 n 32 GLN 73 D GLU 74 n 33 GLU 74 D LEU 75 n 34 LEU 75 D LEU 76 n 35 LEU 76 D ALA 77 n 36 ALA 77 D LEU 78 n 37 LEU 78 D LYS 79 n 38 LYS 79 D GLN 80 n 39 GLN 80 D LYS 81 n 40 LYS 81 D GLN 82 n 41 GLN 82 D GLN 83 n 42 GLN 83 D ILE 84 n 43 ILE 84 D GLN 85 n 44 GLN 85 D ARG 86 n 45 ARG 86 D GLN 87 n 46 GLN 87 D ILE 88 n 47 ILE 88 D LEU 89 n 48 LEU 89 D ILE 90 n 49 ILE 90 D ALA 91 n 50 ALA 91 D GLU 92 n 51 GLU 92 D PHE 93 n 52 PHE 93 D GLN 94 n 53 GLN 94 D ARG 95 n 54 ARG 95 D GLN 96 n 55 GLN 96 D HIS 97 n 56 HIS 97 D GLU 98 n 57 GLU 98 D GLN 99 n 58 GLN 99 D LEU 100 n 59 LEU 100 D SER 101 n 60 SER 101 D ARG 102 n 61 ARG 102 D GLN 103 n 62 GLN 103 D HIS 104 n 63 HIS 104 D GLU 105 n 64 GLU 105 D ALA 106 n 65 ALA 106 D GLN 107 n 66 GLN 107 D LEU 108 n 67 LEU 108 D HIS 109 n 68 HIS 109 D GLU 110 n 69 GLU 110 D HIS 111 n 70 HIS 111 D ILE 112 n 71 ILE 112 D LYS 113 n 72 LYS 113 D GLN 114 n 73 GLN 114 D GLN 115 n 74 GLN 115 D GLN 116 n 75 GLN 116 D GLU 117 n 76 GLU 117 D MET 118 n 77 MET 118 D LEU 119 n 78 LEU 119 D ALA 120 n 79 ALA 120 D MET 121 n 80 MET 121 D LYS 122 n 81 LYS 122 D HIS 123 n 82 HIS 123 D GLN 124 n 83 GLN 124 D GLN 125 n 84 GLN 125 D GLU 126 n 85 GLU 126 D LEU 127 n 86 LEU 127 D LEU 128 n 87 LEU 128 D GLU 129 n 88 GLU 129 D n 89 130 D n 90 131 D n 91 132 D n 92 133 D n 93 134 D n 94 135 D n 95 136 D n 96 137 D n 97 138 D n 98 139 D n 99 140 D n 100 141 D n 101 142 D n 102 143 D n 103 144 D n 104 145 D n 105 146 D n 106 147 D n 107 148 D n 108 149 D n 109 150 D n 110 151 D n 111 152 D n 112 153 D author_and_software_defined_assembly PISA 4 tetrameric 10050 -69 17790 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1 A GLY 42 A GLY 1 1 Y 1 A SER 43 A SER 2 1 Y 1 A SER 44 A SER 3 1 Y 1 A HIS 45 A HIS 4 1 Y 1 A HIS 46 A HIS 5 1 Y 1 A HIS 47 A HIS 6 1 Y 1 A HIS 48 A HIS 7 1 Y 1 A HIS 49 A HIS 8 1 Y 1 A HIS 50 A HIS 9 1 Y 1 A SER 51 A SER 10 1 Y 1 A SER 52 A SER 11 1 Y 1 A GLY 53 A GLY 12 1 Y 1 A LEU 54 A LEU 13 1 Y 1 A VAL 55 A VAL 14 1 Y 1 A PRO 56 A PRO 15 1 Y 1 A ARG 57 A ARG 16 1 Y 1 A GLY 58 A GLY 17 1 Y 1 A SER 59 A SER 18 1 Y 1 A HIS 60 A HIS 19 1 Y 1 A MET 61 A MET 20 1 Y 1 A HIS 130 A HIS 89 1 Y 1 A GLN 131 A GLN 90 1 Y 1 A ARG 132 A ARG 91 1 Y 1 A LYS 133 A LYS 92 1 Y 1 A LEU 134 A LEU 93 1 Y 1 A GLU 135 A GLU 94 1 Y 1 A ARG 136 A ARG 95 1 Y 1 A HIS 137 A HIS 96 1 Y 1 A ARG 138 A ARG 97 1 Y 1 A GLN 139 A GLN 98 1 Y 1 A GLU 140 A GLU 99 1 Y 1 A GLN 141 A GLN 100 1 Y 1 A GLU 142 A GLU 101 1 Y 1 A LEU 143 A LEU 102 1 Y 1 A GLU 144 A GLU 103 1 Y 1 A LYS 145 A LYS 104 1 Y 1 A GLN 146 A GLN 105 1 Y 1 A HIS 147 A HIS 106 1 Y 1 A ARG 148 A ARG 107 1 Y 1 A GLU 149 A GLU 108 1 Y 1 A GLN 150 A GLN 109 1 Y 1 A LYS 151 A LYS 110 1 Y 1 A LEU 152 A LEU 111 1 Y 1 A GLN 153 A GLN 112 1 Y 1 B GLY 42 B GLY 1 1 Y 1 B SER 43 B SER 2 1 Y 1 B SER 44 B SER 3 1 Y 1 B HIS 45 B HIS 4 1 Y 1 B HIS 46 B HIS 5 1 Y 1 B HIS 47 B HIS 6 1 Y 1 B HIS 48 B HIS 7 1 Y 1 B HIS 49 B HIS 8 1 Y 1 B HIS 50 B HIS 9 1 Y 1 B SER 51 B SER 10 1 Y 1 B SER 52 B SER 11 1 Y 1 B GLY 53 B GLY 12 1 Y 1 B LEU 54 B LEU 13 1 Y 1 B VAL 55 B VAL 14 1 Y 1 B PRO 56 B PRO 15 1 Y 1 B ARG 57 B ARG 16 1 Y 1 B GLY 58 B GLY 17 1 Y 1 B SER 59 B SER 18 1 Y 1 B HIS 60 B HIS 19 1 Y 1 B MET 61 B MET 20 1 Y 1 B HIS 130 B HIS 89 1 Y 1 B GLN 131 B GLN 90 1 Y 1 B ARG 132 B ARG 91 1 Y 1 B LYS 133 B LYS 92 1 Y 1 B LEU 134 B LEU 93 1 Y 1 B GLU 135 B GLU 94 1 Y 1 B ARG 136 B ARG 95 1 Y 1 B HIS 137 B HIS 96 1 Y 1 B ARG 138 B ARG 97 1 Y 1 B GLN 139 B GLN 98 1 Y 1 B GLU 140 B GLU 99 1 Y 1 B GLN 141 B GLN 100 1 Y 1 B GLU 142 B GLU 101 1 Y 1 B LEU 143 B LEU 102 1 Y 1 B GLU 144 B GLU 103 1 Y 1 B LYS 145 B LYS 104 1 Y 1 B GLN 146 B GLN 105 1 Y 1 B HIS 147 B HIS 106 1 Y 1 B ARG 148 B ARG 107 1 Y 1 B GLU 149 B GLU 108 1 Y 1 B GLN 150 B GLN 109 1 Y 1 B LYS 151 B LYS 110 1 Y 1 B LEU 152 B LEU 111 1 Y 1 B GLN 153 B GLN 112 1 Y 1 C GLY 42 C GLY 1 1 Y 1 C SER 43 C SER 2 1 Y 1 C SER 44 C SER 3 1 Y 1 C HIS 45 C HIS 4 1 Y 1 C HIS 46 C HIS 5 1 Y 1 C HIS 47 C HIS 6 1 Y 1 C HIS 48 C HIS 7 1 Y 1 C HIS 49 C HIS 8 1 Y 1 C HIS 50 C HIS 9 1 Y 1 C SER 51 C SER 10 1 Y 1 C SER 52 C SER 11 1 Y 1 C GLY 53 C GLY 12 1 Y 1 C LEU 54 C LEU 13 1 Y 1 C VAL 55 C VAL 14 1 Y 1 C PRO 56 C PRO 15 1 Y 1 C ARG 57 C ARG 16 1 Y 1 C GLY 58 C GLY 17 1 Y 1 C SER 59 C SER 18 1 Y 1 C HIS 60 C HIS 19 1 Y 1 C MET 61 C MET 20 1 Y 1 C HIS 130 C HIS 89 1 Y 1 C GLN 131 C GLN 90 1 Y 1 C ARG 132 C ARG 91 1 Y 1 C LYS 133 C LYS 92 1 Y 1 C LEU 134 C LEU 93 1 Y 1 C GLU 135 C GLU 94 1 Y 1 C ARG 136 C ARG 95 1 Y 1 C HIS 137 C HIS 96 1 Y 1 C ARG 138 C ARG 97 1 Y 1 C GLN 139 C GLN 98 1 Y 1 C GLU 140 C GLU 99 1 Y 1 C GLN 141 C GLN 100 1 Y 1 C GLU 142 C GLU 101 1 Y 1 C LEU 143 C LEU 102 1 Y 1 C GLU 144 C GLU 103 1 Y 1 C LYS 145 C LYS 104 1 Y 1 C GLN 146 C GLN 105 1 Y 1 C HIS 147 C HIS 106 1 Y 1 C ARG 148 C ARG 107 1 Y 1 C GLU 149 C GLU 108 1 Y 1 C GLN 150 C GLN 109 1 Y 1 C LYS 151 C LYS 110 1 Y 1 C LEU 152 C LEU 111 1 Y 1 C GLN 153 C GLN 112 1 Y 1 D GLY 42 D GLY 1 1 Y 1 D SER 43 D SER 2 1 Y 1 D SER 44 D SER 3 1 Y 1 D HIS 45 D HIS 4 1 Y 1 D HIS 46 D HIS 5 1 Y 1 D HIS 47 D HIS 6 1 Y 1 D HIS 48 D HIS 7 1 Y 1 D HIS 49 D HIS 8 1 Y 1 D HIS 50 D HIS 9 1 Y 1 D SER 51 D SER 10 1 Y 1 D SER 52 D SER 11 1 Y 1 D GLY 53 D GLY 12 1 Y 1 D LEU 54 D LEU 13 1 Y 1 D VAL 55 D VAL 14 1 Y 1 D PRO 56 D PRO 15 1 Y 1 D ARG 57 D ARG 16 1 Y 1 D GLY 58 D GLY 17 1 Y 1 D SER 59 D SER 18 1 Y 1 D HIS 60 D HIS 19 1 Y 1 D MET 61 D MET 20 1 Y 1 D HIS 130 D HIS 89 1 Y 1 D GLN 131 D GLN 90 1 Y 1 D ARG 132 D ARG 91 1 Y 1 D LYS 133 D LYS 92 1 Y 1 D LEU 134 D LEU 93 1 Y 1 D GLU 135 D GLU 94 1 Y 1 D ARG 136 D ARG 95 1 Y 1 D HIS 137 D HIS 96 1 Y 1 D ARG 138 D ARG 97 1 Y 1 D GLN 139 D GLN 98 1 Y 1 D GLU 140 D GLU 99 1 Y 1 D GLN 141 D GLN 100 1 Y 1 D GLU 142 D GLU 101 1 Y 1 D LEU 143 D LEU 102 1 Y 1 D GLU 144 D GLU 103 1 Y 1 D LYS 145 D LYS 104 1 Y 1 D GLN 146 D GLN 105 1 Y 1 D HIS 147 D HIS 106 1 Y 1 D ARG 148 D ARG 107 1 Y 1 D GLU 149 D GLU 108 1 Y 1 D GLN 150 D GLN 109 1 Y 1 D LYS 151 D LYS 110 1 Y 1 D LEU 152 D LEU 111 1 Y 1 D GLN 153 D GLN 112 1 Y 1 A GLU 63 -165.96 -72.58 1 A GLN 114 -150.07 -25.77 1 A HIS 123 -142.15 -36.84 1 B GLU 63 -160.05 -68.14 1 B ALA 120 -68.94 -73.65 1 B MET 121 -57.52 -5.50 1 C GLU 63 -171.17 -65.01 1 C ALA 120 -64.05 -76.41 1 C MET 121 -58.69 -5.45 1 D GLU 63 -172.27 -68.95 1 D GLN 116 -76.98 -74.71 1 D ALA 120 -72.35 -72.79 protein_rep.param 93.34 42.392 0.000 7.494 -24.865 0.000 -17.528 0.307 0.281 0.283 2.60 6.00 1702 18241 16845 RANDOM 1 2.000 SAD ENGH & HUBER 2.60 6.00 0 2328 0 0 2328 2.801 1.5 4.822 2.0 4.797 2.0 8.211 2.5 2.600 6.000 2H8N 19701 2.000 1 99.0 2.60 2.73 99.0 refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package 1.1 data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection ADSC data scaling HKL-2000 phasing CNS Structure of a glutamine-rich domain from histone deacetylase 4 1 N N 1 N N 1 N N 1 N N The tetramer in the asymmetric unit is the biological assembly, no crystallographic symmetry is invovled in the tetramer formation. A GLU 63 A GLU 22 HELX_P A LYS 122 A LYS 81 1 1 60 A GLN 124 A GLN 83 HELX_P A GLU 129 A GLU 88 5 2 6 B GLU 63 B GLU 22 HELX_P B LYS 122 B LYS 81 1 3 60 B GLN 124 B GLN 83 HELX_P B GLU 129 B GLU 88 5 4 6 C GLU 63 C GLU 22 HELX_P C LYS 122 C LYS 81 1 5 60 C GLN 124 C GLN 83 HELX_P C GLU 129 C GLU 88 5 6 6 D GLU 63 D GLU 22 HELX_P D LYS 122 D LYS 81 1 7 60 D GLN 124 D GLN 83 HELX_P D GLU 129 D GLU 88 5 8 6 TRANSCRIPTION alpha helix, polar zipper, TRANSCRIPTION HDAC4_HUMAN UNP 1 62 P56524 AEPALREQQLQQELLALKQKQQIQRQILIAEFQRQHEQLSRQHEAQLHEHIKQQQEMLAMKHQQELLEHQRKLERHRQEQ ELEKQHREQKLQ 62 153 2H8N 62 153 P56524 A 1 21 112 62 153 2H8N 62 153 P56524 B 1 21 112 62 153 2H8N 62 153 P56524 C 1 21 112 62 153 2H8N 62 153 P56524 D 1 21 112 1 cloning artifact GLY 42 2H8N A P56524 UNP 1 1 cloning artifact SER 43 2H8N A P56524 UNP 2 1 cloning artifact SER 44 2H8N A P56524 UNP 3 1 expression tag HIS 45 2H8N A P56524 UNP 4 1 expression tag HIS 46 2H8N A P56524 UNP 5 1 expression tag HIS 47 2H8N A P56524 UNP 6 1 expression tag HIS 48 2H8N A P56524 UNP 7 1 expression tag HIS 49 2H8N A P56524 UNP 8 1 expression tag HIS 50 2H8N A P56524 UNP 9 1 cloning artifact SER 51 2H8N A P56524 UNP 10 1 cloning artifact SER 52 2H8N A P56524 UNP 11 1 cloning artifact GLY 53 2H8N A P56524 UNP 12 1 cloning artifact LEU 54 2H8N A P56524 UNP 13 1 cloning artifact VAL 55 2H8N A P56524 UNP 14 1 cloning artifact PRO 56 2H8N A P56524 UNP 15 1 cloning artifact ARG 57 2H8N A P56524 UNP 16 1 cloning artifact GLY 58 2H8N A P56524 UNP 17 1 cloning artifact SER 59 2H8N A P56524 UNP 18 1 cloning artifact HIS 60 2H8N A P56524 UNP 19 1 cloning artifact MET 61 2H8N A P56524 UNP 20 2 cloning artifact GLY 42 2H8N B P56524 UNP 1 2 cloning artifact SER 43 2H8N B P56524 UNP 2 2 cloning artifact SER 44 2H8N B P56524 UNP 3 2 expression tag HIS 45 2H8N B P56524 UNP 4 2 expression tag HIS 46 2H8N B P56524 UNP 5 2 expression tag HIS 47 2H8N B P56524 UNP 6 2 expression tag HIS 48 2H8N B P56524 UNP 7 2 expression tag HIS 49 2H8N B P56524 UNP 8 2 expression tag HIS 50 2H8N B P56524 UNP 9 2 cloning artifact SER 51 2H8N B P56524 UNP 10 2 cloning artifact SER 52 2H8N B P56524 UNP 11 2 cloning artifact GLY 53 2H8N B P56524 UNP 12 2 cloning artifact LEU 54 2H8N B P56524 UNP 13 2 cloning artifact VAL 55 2H8N B P56524 UNP 14 2 cloning artifact PRO 56 2H8N B P56524 UNP 15 2 cloning artifact ARG 57 2H8N B P56524 UNP 16 2 cloning artifact GLY 58 2H8N B P56524 UNP 17 2 cloning artifact SER 59 2H8N B P56524 UNP 18 2 cloning artifact HIS 60 2H8N B P56524 UNP 19 2 cloning artifact MET 61 2H8N B P56524 UNP 20 3 cloning artifact GLY 42 2H8N C P56524 UNP 1 3 cloning artifact SER 43 2H8N C P56524 UNP 2 3 cloning artifact SER 44 2H8N C P56524 UNP 3 3 expression tag HIS 45 2H8N C P56524 UNP 4 3 expression tag HIS 46 2H8N C P56524 UNP 5 3 expression tag HIS 47 2H8N C P56524 UNP 6 3 expression tag HIS 48 2H8N C P56524 UNP 7 3 expression tag HIS 49 2H8N C P56524 UNP 8 3 expression tag HIS 50 2H8N C P56524 UNP 9 3 cloning artifact SER 51 2H8N C P56524 UNP 10 3 cloning artifact SER 52 2H8N C P56524 UNP 11 3 cloning artifact GLY 53 2H8N C P56524 UNP 12 3 cloning artifact LEU 54 2H8N C P56524 UNP 13 3 cloning artifact VAL 55 2H8N C P56524 UNP 14 3 cloning artifact PRO 56 2H8N C P56524 UNP 15 3 cloning artifact ARG 57 2H8N C P56524 UNP 16 3 cloning artifact GLY 58 2H8N C P56524 UNP 17 3 cloning artifact SER 59 2H8N C P56524 UNP 18 3 cloning artifact HIS 60 2H8N C P56524 UNP 19 3 cloning artifact MET 61 2H8N C P56524 UNP 20 4 cloning artifact GLY 42 2H8N D P56524 UNP 1 4 cloning artifact SER 43 2H8N D P56524 UNP 2 4 cloning artifact SER 44 2H8N D P56524 UNP 3 4 expression tag HIS 45 2H8N D P56524 UNP 4 4 expression tag HIS 46 2H8N D P56524 UNP 5 4 expression tag HIS 47 2H8N D P56524 UNP 6 4 expression tag HIS 48 2H8N D P56524 UNP 7 4 expression tag HIS 49 2H8N D P56524 UNP 8 4 expression tag HIS 50 2H8N D P56524 UNP 9 4 cloning artifact SER 51 2H8N D P56524 UNP 10 4 cloning artifact SER 52 2H8N D P56524 UNP 11 4 cloning artifact GLY 53 2H8N D P56524 UNP 12 4 cloning artifact LEU 54 2H8N D P56524 UNP 13 4 cloning artifact VAL 55 2H8N D P56524 UNP 14 4 cloning artifact PRO 56 2H8N D P56524 UNP 15 4 cloning artifact ARG 57 2H8N D P56524 UNP 16 4 cloning artifact GLY 58 2H8N D P56524 UNP 17 4 cloning artifact SER 59 2H8N D P56524 UNP 18 4 cloning artifact HIS 60 2H8N D P56524 UNP 19 4 cloning artifact MET 61 2H8N D P56524 UNP 20 5 C 1 2 1