0.019871 0.011473 0.000000 0.000000 0.022945 0.000000 0.000000 0.000000 0.013484 0.00000 0.00000 0.00000 Heaslet, H. Lin, Y.C. Elder, J.H. Stout, C.D. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 6 90.00 90.00 120.00 50.324 50.324 74.161 C50 H64 N6 O10 909.077 benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate TL-3, C2 symmetric inhibitor peptide-like C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N C N 2 N O N 3 N O N 4 N C Y 5 N C Y 6 N C Y 7 N C Y 8 N C Y 9 N C Y 10 N C N 11 N N N 12 S C N 13 N C N 14 N O N 15 N C N 16 N N N 17 S C N 18 N C N 19 N O N 20 N C N 21 N C N 22 N C N 23 R C N 24 N O N 25 S C N 26 N N N 27 N C Y 28 N C Y 29 N C Y 30 N C Y 31 N C Y 32 N C Y 33 N C N 34 N N N 35 S C N 36 R C N 37 N O N 38 N C Y 39 N C Y 40 N C Y 41 N C Y 42 N C Y 43 N C Y 44 N C N 45 N N N 46 S C N 47 N C N 48 N O N 49 N C N 50 N C N 51 N C N 52 N N N 53 S C N 54 N C N 55 N O N 56 N C N 57 N C N 58 N O N 59 N O N 60 N C Y 61 N C Y 62 N C Y 63 N C Y 64 N C Y 65 N C Y 66 N C N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N H N 75 N H N 76 N H N 77 N H N 78 N H N 79 N H N 80 N H N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N H N 89 N H N 90 N H N 91 N H N 92 N H N 93 N H N 94 N H N 95 N H N 96 N H N 97 N H N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N H N 109 N H N 110 N H N 111 N H N 112 N H N 113 N H N 114 N H N 115 N H N 116 N H N 117 N H N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N H N 128 N H N 129 N H N 130 N H N 131 N N N 132 S C N 133 N C N 134 N O N 135 N C N 136 N O N 137 N H N 138 N H N 139 N H N 140 N H N 141 N H N 142 N H N 143 N H N 144 N N N 145 S C N 146 N C N 147 N O N 148 N C N 149 N C N 150 N C N 151 N N N 152 N C N 153 N N N 154 N N N 155 N O N 156 N H N 157 N H N 158 N H N 159 N H N 160 N H N 161 N H N 162 N H N 163 N H N 164 N H N 165 N H N 166 N H N 167 N H N 168 N H N 169 N H N 170 N H N 171 N N N 172 S C N 173 N C N 174 N O N 175 N C N 176 N C N 177 N O N 178 N N N 179 N O N 180 N H N 181 N H N 182 N H N 183 N H N 184 N H N 185 N H N 186 N H N 187 N H N 188 N N N 189 S C N 190 N C N 191 N O N 192 N C N 193 N C N 194 N O N 195 N O N 196 N O N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N N N 205 R C N 206 N C N 207 N O N 208 N C N 209 N S N 210 N O N 211 N H N 212 N H N 213 N H N 214 N H N 215 N H N 216 N H N 217 N H N 218 N N N 219 S C N 220 N C N 221 N O N 222 N C N 223 N C N 224 N C N 225 N O N 226 N N N 227 N O N 228 N H N 229 N H N 230 N H N 231 N H N 232 N H N 233 N H N 234 N H N 235 N H N 236 N H N 237 N H N 238 N N N 239 S C N 240 N C N 241 N O N 242 N C N 243 N C N 244 N C N 245 N O N 246 N O N 247 N O N 248 N H N 249 N H N 250 N H N 251 N H N 252 N H N 253 N H N 254 N H N 255 N H N 256 N H N 257 N N N 258 N C N 259 N C N 260 N O N 261 N O N 262 N H N 263 N H N 264 N H N 265 N H N 266 N H N 267 N N N 268 S C N 269 N C N 270 N O N 271 N C Y 272 N C Y 273 N N Y 274 N C Y 275 N C Y 276 N N N 277 N O N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N H N 286 N H N 287 N H N 288 N O N 289 N H N 290 N H N 291 N N N 292 S C N 293 N C N 294 N O N 295 S C N 296 N C N 297 N C N 298 N C N 299 N O N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N H N 309 N H N 310 N H N 311 N H N 312 N H N 313 N N N 314 S C N 315 N C N 316 N O N 317 N C N 318 N C N 319 N C N 320 N C N 321 N O N 322 N H N 323 N H N 324 N H N 325 N H N 326 N H N 327 N H N 328 N H N 329 N H N 330 N H N 331 N H N 332 N H N 333 N H N 334 N H N 335 N N N 336 S C N 337 N C N 338 N O N 339 N C N 340 N C N 341 N C N 342 N C N 343 N N N 344 N O N 345 N H N 346 N H N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N H N 357 N H N 358 N H N 359 N H N 360 N N N 361 S C N 362 N C N 363 N O N 364 N C N 365 N C N 366 N S N 367 N C N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C Y 385 N C Y 386 N C Y 387 N C Y 388 N C Y 389 N C Y 390 N C N 391 N O N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 399 N H N 400 N H N 401 N H N 402 N H N 403 N N N 404 S C N 405 N C N 406 N O N 407 N C N 408 N C N 409 N C N 410 N O N 411 N H N 412 N H N 413 N H N 414 N H N 415 N H N 416 N H N 417 N H N 418 N H N 419 N H N 420 N N N 421 S C N 422 N C N 423 N O N 424 N C N 425 N O N 426 N O N 427 N H N 428 N H N 429 N H N 430 N H N 431 N H N 432 N H N 433 N H N 434 N N N 435 S C N 436 N C N 437 N O N 438 R C N 439 N O N 440 N C N 441 N O N 442 N H N 443 N H N 444 N H N 445 N H N 446 N H N 447 N H N 448 N H N 449 N H N 450 N H N 451 N N N 452 S C N 453 N C N 454 N O N 455 N C Y 456 N C Y 457 N C Y 458 N C Y 459 N C Y 460 N C Y 461 N C N 462 N O N 463 N O N 464 N H N 465 N H N 466 N H N 467 N H N 468 N H N 469 N H N 470 N H N 471 N H N 472 N H N 473 N H N 474 N H N 475 N N N 476 S C N 477 N C N 478 N O N 479 N C N 480 N C N 481 N C N 482 N O N 483 N H N 484 N H N 485 N H N 486 N H N 487 N H N 488 N H N 489 N H N 490 N H N 491 N H N 492 N H N 493 N H N 1 N doub N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N sing Y 8 N doub Y 9 N sing Y 10 N sing N 11 N sing Y 12 N doub N 13 N sing Y 14 N sing N 15 N sing Y 16 N doub N 17 N sing N 18 N sing N 19 N sing N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N doub N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N sing N 34 N doub N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N sing N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N sing N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing Y 57 N doub Y 58 N sing Y 59 N sing N 60 N sing Y 61 N doub N 62 N sing Y 63 N doub N 64 N sing Y 65 N sing N 66 N sing N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N sing N 77 N sing N 78 N sing N 79 N sing Y 80 N doub Y 81 N sing Y 82 N sing N 83 N sing Y 84 N doub N 85 N sing Y 86 N doub N 87 N sing Y 88 N sing N 89 N sing N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N sing N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N doub N 114 N sing N 115 N sing N 116 N sing N 117 N doub N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing Y 123 N doub Y 124 N sing Y 125 N sing N 126 N sing Y 127 N doub N 128 N sing Y 129 N sing N 130 N sing Y 131 N doub N 132 N sing N 133 N sing N 134 N sing N 135 N sing N 136 N sing N 137 N sing N 138 N sing N 139 N sing N 140 N doub N 141 N sing N 142 N sing N 143 N sing N 144 N sing N 145 N sing N 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N doub N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N sing N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N doub N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N doub N 179 N sing N 180 N sing N 181 N sing N 182 N sing N 183 N doub N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N doub N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N doub N 200 N sing N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N doub N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N doub N 223 N sing N 224 N sing N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N doub N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N sing N 241 N doub N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing N 248 N sing N 249 N doub N 250 N sing N 251 N sing N 252 N sing N 253 N sing N 254 N sing N 255 N sing N 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing N 261 N sing N 262 N sing N 263 N sing N 264 N sing N 265 N sing N 266 N sing N 267 N sing N 268 N doub N 269 N sing N 270 N sing N 271 N sing N 272 N sing Y 273 N sing Y 274 N doub Y 275 N doub N 276 N sing Y 277 N sing N 278 N sing Y 279 N sing N 280 N sing N 281 N sing N 282 N sing N 283 N sing N 284 N sing N 285 N sing N 286 N sing N 287 N sing N 288 N sing N 289 N sing N 290 N sing N 291 N doub N 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N sing N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N doub N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N sing N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N sing N 333 N doub N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N sing N 349 N sing N 350 N sing N 351 N sing N 352 N sing N 353 N sing N 354 N sing N 355 N sing N 356 N sing N 357 N doub N 358 N sing N 359 N sing N 360 N sing N 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N sing N 373 N sing N 374 N sing N 375 N sing N 376 N doub N 377 N sing N 378 N sing N 379 N sing N 380 N sing Y 381 N doub Y 382 N sing Y 383 N sing N 384 N sing Y 385 N doub N 386 N sing Y 387 N doub N 388 N sing Y 389 N sing N 390 N sing N 391 N sing N 392 N sing N 393 N sing N 394 N sing N 395 N sing N 396 N sing N 397 N sing N 398 N sing N 399 N doub N 400 N sing N 401 N sing N 402 N sing N 403 N sing N 404 N sing N 405 N sing N 406 N sing N 407 N sing N 408 N sing N 409 N sing N 410 N sing N 411 N sing N 412 N sing N 413 N sing N 414 N sing N 415 N sing N 416 N doub N 417 N sing N 418 N sing N 419 N sing N 420 N sing N 421 N sing N 422 N sing N 423 N sing N 424 N sing N 425 N sing N 426 N sing N 427 N sing N 428 N sing N 429 N doub N 430 N sing N 431 N sing N 432 N sing N 433 N sing N 434 N sing N 435 N sing N 436 N sing N 437 N sing N 438 N sing N 439 N sing N 440 N sing N 441 N sing N 442 N sing N 443 N sing N 444 N sing N 445 N doub N 446 N sing N 447 N sing N 448 N sing N 449 N sing Y 450 N doub Y 451 N sing Y 452 N sing N 453 N sing Y 454 N doub N 455 N sing Y 456 N doub N 457 N sing Y 458 N sing N 459 N sing N 460 N sing N 461 N sing N 462 N sing N 463 N sing N 464 N sing N 465 N sing N 466 N sing N 467 N sing N 468 N sing N 469 N doub N 470 N sing N 471 N sing N 472 N sing N 473 N sing N 474 N sing N 475 N sing N 476 N sing N 477 N sing N 478 N sing N 479 N sing N 480 N sing UK Retrovirology 1742-4690 4 1 1 10.1186/1742-4690-4-1 17212810 Crystal structure of an FIV/HIV chimeric protease complexed with the broad-based inhibitor, TL-3. 2007 10.2210/pdb2hah/pdb pdb_00002hah 100 1 Double-crystal monochromator, 1m long Rh coated bent cylindrical mirror for horizontal and vertical focusing CCD 2006-02-18 ADSC QUANTUM 315 Double crystal, parallel SINGLE WAVELENGTH M x-ray 1 0.97944 1.0 BL1-5 SSRL 0.97944 SYNCHROTRON SSRL BEAMLINE BL1-5 13226.226 Protease 3.4.23.16 residues 39-154 I37V, N55M, M56I, I57G, V59I, G62F, K63I, L97T, I98P, Q99V, P100N, L101I 1 man polymer 909.077 benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate 1 syn non-polymer 18.015 water 120 nat water Retropepsin no no YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSTPVNILGRDNMIKFNIRLVM YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITVLNRRDFQVKNSIENGRQMIGGIGGFIRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSTPVNILGRDNMIKFNIRLVM A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Lentivirus Feline immunodeficiency virus isolate petaluma Escherichia sample POL 11674 Feline immunodeficiency virus (isolate Petaluma) 562 Escherichia coli Rosetta(DE3)pLysS plasmid pET-21a(+) 1 2.05 39.97 VAPOR DIFFUSION, HANGING DROP 7.5 100mM Hepes, 2.5M LiCl2, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 281.16K 281.16 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Atomic model Database references Derived calculations Non-polymer description Structure summary Version format compliance Other Database references Derived calculations Data collection Refinement description 1 0 2007-02-13 1 1 2008-05-01 1 2 2011-07-13 1 3 2013-02-27 1 4 2021-10-20 1 5 2023-08-30 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Structure of wild-type FIV protease in complex with TL-3 Structure of wild-type HIV protease in complex with TL-3 RCSB Y RCSB 2006-06-12 REL REL 3TL benzyl [(1S,4S,7S,8R,9R,10S,13S,16S)-7,10-dibenzyl-8,9-dihydroxy-1,16-dimethyl-4,13-bis(1-methylethyl)-2,5,12,15,18-pentaoxo-20-phenyl-19-oxa-3,6,11,14,17-pentaazaicos-1-yl]carbamate HOH water THE INHIBITOR IS A C2 SYMMETRIC HIV PROTEASE 5FIV pdb entry 5FIV PDB experimental model Inhibitor N-[(benzyloxy)carbonyl]-L-alanyl-N-[(1R)-1-benzyl-2-oxoethyl]-L-valinamide Peptide-like 3TL 201 2 3TL 3TL 201 A HOH 202 3 HOH HOH 202 A HOH 203 3 HOH HOH 203 A HOH 204 3 HOH HOH 204 A HOH 205 3 HOH HOH 205 A HOH 206 3 HOH HOH 206 A HOH 207 3 HOH HOH 207 A HOH 208 3 HOH HOH 208 A HOH 209 3 HOH HOH 209 A HOH 210 3 HOH HOH 210 A HOH 211 3 HOH HOH 211 A HOH 212 3 HOH HOH 212 A HOH 213 3 HOH HOH 213 A HOH 214 3 HOH HOH 214 A HOH 215 3 HOH HOH 215 A HOH 216 3 HOH HOH 216 A HOH 217 3 HOH HOH 217 A HOH 218 3 HOH HOH 218 A HOH 219 3 HOH HOH 219 A HOH 220 3 HOH HOH 220 A HOH 221 3 HOH HOH 221 A HOH 222 3 HOH HOH 222 A HOH 223 3 HOH HOH 223 A HOH 224 3 HOH HOH 224 A HOH 225 3 HOH HOH 225 A HOH 226 3 HOH HOH 226 A HOH 227 3 HOH HOH 227 A HOH 228 3 HOH HOH 228 A HOH 229 3 HOH HOH 229 A HOH 230 3 HOH HOH 230 A HOH 231 3 HOH HOH 231 A HOH 232 3 HOH HOH 232 A HOH 233 3 HOH HOH 233 A HOH 234 3 HOH HOH 234 A HOH 235 3 HOH HOH 235 A HOH 236 3 HOH HOH 236 A HOH 237 3 HOH HOH 237 A HOH 238 3 HOH HOH 238 A HOH 239 3 HOH HOH 239 A HOH 240 3 HOH HOH 240 A HOH 241 3 HOH HOH 241 A HOH 242 3 HOH HOH 242 A HOH 243 3 HOH HOH 243 A HOH 244 3 HOH HOH 244 A HOH 245 3 HOH HOH 245 A HOH 246 3 HOH HOH 246 A HOH 247 3 HOH HOH 247 A HOH 248 3 HOH HOH 248 A HOH 249 3 HOH HOH 249 A HOH 250 3 HOH HOH 250 A HOH 251 3 HOH HOH 251 A HOH 252 3 HOH HOH 252 A HOH 253 3 HOH HOH 253 A HOH 254 3 HOH HOH 254 A HOH 255 3 HOH HOH 255 A HOH 256 3 HOH HOH 256 A HOH 257 3 HOH HOH 257 A HOH 258 3 HOH HOH 258 A HOH 259 3 HOH HOH 259 A HOH 260 3 HOH HOH 260 A HOH 261 3 HOH HOH 261 A HOH 262 3 HOH HOH 262 A HOH 263 3 HOH HOH 263 A HOH 264 3 HOH HOH 264 A HOH 265 3 HOH HOH 265 A HOH 266 3 HOH HOH 266 A HOH 267 3 HOH HOH 267 A HOH 268 3 HOH HOH 268 A HOH 269 3 HOH HOH 269 A HOH 270 3 HOH HOH 270 A HOH 271 3 HOH HOH 271 A HOH 272 3 HOH HOH 272 A HOH 273 3 HOH HOH 273 A HOH 274 3 HOH HOH 274 A HOH 275 3 HOH HOH 275 A HOH 276 3 HOH HOH 276 A HOH 277 3 HOH HOH 277 A HOH 278 3 HOH HOH 278 A HOH 279 3 HOH HOH 279 A HOH 280 3 HOH HOH 280 A HOH 281 3 HOH HOH 281 A HOH 282 3 HOH HOH 282 A HOH 283 3 HOH HOH 283 A HOH 284 3 HOH HOH 284 A HOH 285 3 HOH HOH 285 A HOH 286 3 HOH HOH 286 A HOH 287 3 HOH HOH 287 A HOH 288 3 HOH HOH 288 A HOH 289 3 HOH HOH 289 A HOH 290 3 HOH HOH 290 A HOH 291 3 HOH HOH 291 A HOH 292 3 HOH HOH 292 A HOH 293 3 HOH HOH 293 A HOH 294 3 HOH HOH 294 A HOH 295 3 HOH HOH 295 A HOH 296 3 HOH HOH 296 A HOH 297 3 HOH HOH 297 A HOH 298 3 HOH HOH 298 A HOH 299 3 HOH HOH 299 A HOH 300 3 HOH HOH 300 A HOH 301 3 HOH HOH 301 A HOH 302 3 HOH HOH 302 A HOH 303 3 HOH HOH 303 A HOH 304 3 HOH HOH 304 A HOH 305 3 HOH HOH 305 A HOH 306 3 HOH HOH 306 A HOH 307 3 HOH HOH 307 A HOH 308 3 HOH HOH 308 A HOH 309 3 HOH HOH 309 A HOH 310 3 HOH HOH 310 A HOH 311 3 HOH HOH 311 A HOH 312 3 HOH HOH 312 A HOH 313 3 HOH HOH 313 A HOH 314 3 HOH HOH 314 A HOH 315 3 HOH HOH 315 A HOH 316 3 HOH HOH 316 A HOH 317 3 HOH HOH 317 A HOH 318 3 HOH HOH 318 A HOH 319 3 HOH HOH 319 A HOH 320 3 HOH HOH 320 A HOH 321 3 HOH HOH 321 A n 1 1 A n 2 2 A n 3 3 A n 4 4 A GLY 5 n 5 GLY 5 A THR 6 n 6 THR 6 A THR 7 n 7 THR 7 A THR 8 n 8 THR 8 A THR 9 n 9 THR 9 A LEU 10 n 10 LEU 10 A GLU 11 n 11 GLU 11 A LYS 12 n 12 LYS 12 A ARG 13 n 13 ARG 13 A PRO 14 n 14 PRO 14 A GLU 15 n 15 GLU 15 A ILE 16 n 16 ILE 16 A LEU 17 n 17 LEU 17 A ILE 18 n 18 ILE 18 A PHE 19 n 19 PHE 19 A VAL 20 n 20 VAL 20 A ASN 21 n 21 ASN 21 A GLY 22 n 22 GLY 22 A TYR 23 n 23 TYR 23 A PRO 24 n 24 PRO 24 A ILE 25 n 25 ILE 25 A LYS 26 n 26 LYS 26 A PHE 27 n 27 PHE 27 A LEU 28 n 28 LEU 28 A LEU 29 n 29 LEU 29 A ASP 30 n 30 ASP 30 A THR 31 n 31 THR 31 A GLY 32 n 32 GLY 32 A ALA 33 n 33 ALA 33 A ASP 34 n 34 ASP 34 A ILE 35 n 35 ILE 35 A THR 36 n 36 THR 36 A VAL 37 n 37 VAL 37 A LEU 38 n 38 LEU 38 A ASN 39 n 39 ASN 39 A ARG 40 n 40 ARG 40 A ARG 41 n 41 ARG 41 A ASP 42 n 42 ASP 42 A PHE 43 n 43 PHE 43 A GLN 44 n 44 GLN 44 A VAL 45 n 45 VAL 45 A LYS 46 n 46 LYS 46 A ASN 47 n 47 ASN 47 A SER 48 n 48 SER 48 A ILE 49 n 49 ILE 49 A GLU 50 n 50 GLU 50 A ASN 51 n 51 ASN 51 A GLY 52 n 52 GLY 52 A ARG 53 n 53 ARG 53 A GLN 54 n 54 GLN 54 A MET 55 n 55 MET 55 A ILE 56 n 56 ILE 56 A GLY 57 n 57 GLY 57 A GLY 58 n 58 GLY 58 A ILE 59 n 59 ILE 59 A GLY 60 n 60 GLY 60 A GLY 61 n 61 GLY 61 A PHE 62 n 62 PHE 62 A ILE 63 n 63 ILE 63 A ARG 64 n 64 ARG 64 A GLY 65 n 65 GLY 65 A THR 66 n 66 THR 66 A ASN 67 n 67 ASN 67 A TYR 68 n 68 TYR 68 A ILE 69 n 69 ILE 69 A ASN 70 n 70 ASN 70 A VAL 71 n 71 VAL 71 A HIS 72 n 72 HIS 72 A LEU 73 n 73 LEU 73 A GLU 74 n 74 GLU 74 A ILE 75 n 75 ILE 75 A ARG 76 n 76 ARG 76 A ASP 77 n 77 ASP 77 A GLU 78 n 78 GLU 78 A ASN 79 n 79 ASN 79 A TYR 80 n 80 TYR 80 A LYS 81 n 81 LYS 81 A THR 82 n 82 THR 82 A GLN 83 n 83 GLN 83 A CYS 84 n 84 CYS 84 A ILE 85 n 85 ILE 85 A PHE 86 n 86 PHE 86 A GLY 87 n 87 GLY 87 A ASN 88 n 88 ASN 88 A VAL 89 n 89 VAL 89 A CYS 90 n 90 CYS 90 A VAL 91 n 91 VAL 91 A LEU 92 n 92 LEU 92 A GLU 93 n 93 GLU 93 A ASP 94 n 94 ASP 94 A ASN 95 n 95 ASN 95 A SER 96 n 96 SER 96 A THR 97 n 97 THR 97 A PRO 98 n 98 PRO 98 A VAL 99 n 99 VAL 99 A ASN 100 n 100 ASN 100 A ILE 101 n 101 ILE 101 A LEU 102 n 102 LEU 102 A GLY 103 n 103 GLY 103 A ARG 104 n 104 ARG 104 A ASP 105 n 105 ASP 105 A ASN 106 n 106 ASN 106 A MET 107 n 107 MET 107 A ILE 108 n 108 ILE 108 A LYS 109 n 109 LYS 109 A PHE 110 n 110 PHE 110 A ASN 111 n 111 ASN 111 A ILE 112 n 112 ILE 112 A ARG 113 n 113 ARG 113 A LEU 114 n 114 LEU 114 A VAL 115 n 115 VAL 115 A MET 116 n 116 MET 116 A author_and_software_defined_assembly PISA,PQS 2 dimeric 5450 -22 10220 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 5_553 x-y,-y,-z-4/3 crystal symmetry operation 0.0000000000 0.0000000000 -98.8813333333 A N ILE 49 A N ILE 49 A O ILE 69 A O ILE 69 A N THR 66 A N THR 66 A O VAL 91 A O VAL 91 A O LEU 92 A O LEU 92 A N LEU 38 A N LEU 38 A N VAL 37 A N VAL 37 A O ILE 101 A O ILE 101 A O LEU 102 A O LEU 102 A N LEU 28 A N LEU 28 A O TYR 23 A O TYR 23 A N VAL 20 A N VAL 20 A N PHE 19 A N PHE 19 A O GLU 74 A O GLU 74 1 A HOH 231 C HOH 1 A CD LYS 81 A CD LYS 81 0 Y 1 A CE LYS 81 A CE LYS 81 0 Y 1 A NZ LYS 81 A NZ LYS 81 0 Y 1 A N51 3TL 201 B N51 3TL 1 1 N 1 A C51 3TL 201 B C51 3TL 1 1 N 1 A C52 3TL 201 B C52 3TL 1 1 N 1 A O51 3TL 201 B O51 3TL 1 1 N 1 A C53 3TL 201 B C53 3TL 1 1 N 1 A C54 3TL 201 B C54 3TL 1 1 N 1 A C55 3TL 201 B C55 3TL 1 1 N 1 A C59 3TL 201 B C59 3TL 1 1 N 1 A C56 3TL 201 B C56 3TL 1 1 N 1 A C58 3TL 201 B C58 3TL 1 1 N 1 A C57 3TL 201 B C57 3TL 1 1 N 1 A N52 3TL 201 B N52 3TL 1 1 N 1 A C60 3TL 201 B C60 3TL 1 1 N 1 A C61 3TL 201 B C61 3TL 1 1 N 1 A O52 3TL 201 B O52 3TL 1 1 N 1 A C62 3TL 201 B C62 3TL 1 1 N 1 A CG6 3TL 201 B CG6 3TL 1 1 N 1 A CG5 3TL 201 B CG5 3TL 1 1 N 1 A N54 3TL 201 B N54 3TL 1 1 N 1 A C68 3TL 201 B C68 3TL 1 1 N 1 A C69 3TL 201 B C69 3TL 1 1 N 1 A O54 3TL 201 B O54 3TL 1 1 N 1 A C70 3TL 201 B C70 3TL 1 1 N 1 A C81 3TL 201 B C81 3TL 1 1 N 1 A O58 3TL 201 B O58 3TL 1 1 N 1 A O59 3TL 201 B O59 3TL 1 1 N 1 A CA5 3TL 201 B CA5 3TL 1 1 N 1 A C50 3TL 201 B C50 3TL 1 1 N 1 A C63 3TL 201 B C63 3TL 1 1 N 1 A C64 3TL 201 B C64 3TL 1 1 N 1 A C65 3TL 201 B C65 3TL 1 1 N 1 A C66 3TL 201 B C66 3TL 1 1 N 1 A C67 3TL 201 B C67 3TL 1 1 N 1 A TYR 1 A TYR 1 1 Y 1 A ASN 2 A ASN 2 1 Y 1 A LYS 3 A LYS 3 1 Y 1 A VAL 4 A VAL 4 1 Y 1 A LYS 46 52.24 -126.33 1 A ASN 51 -146.35 39.49 protein_rep.param int.par water_rep.param 24.431 0.375 0.610 0.000 0.375 0.000 -0.751 0.233 0.184 0.184 0.233 1.700 74.000 627 12424 12396 5.000 99.600 0.874 Random 1 0.00 MOLECULAR REPLACEMENT pdb entry 5FIV Engh & Huber 60.962 1.700 74.000 120 1045 33 0 892 1.166 1.500 2.112 2.000 1.772 2.000 3.055 2.500 0.265 0.251 1.750 56 960 1016 12 0.257 0.231 1.810 41 967 1008 12 0.335 0.221 1.870 49 972 1021 12 0.269 0.228 1.950 61 954 1015 12 0.245 0.186 2.030 44 975 1019 12 0.204 0.182 2.140 48 970 1018 12 0.241 0.18 2.280 50 983 1033 12 0.261 0.2 2.450 45 976 1021 12 0.218 0.16 2.700 60 968 1028 12 0.241 0.193 3.090 59 1004 1063 12 0.21 0.162 3.890 61 999 1060 12 0.22 0.175 74.000 53 1041 1094 12 1.7 74.0 2HAH 12484 12440 2.0 3.0 0.07 1 6.2 97.0 0.368 1.7 2.6 5451 1 6.0 99.0 data scaling Pflugrath, J.W. jwp@RigakuMSC.com http://www.msc.com/protein/dtrek.html d*TREK package phasing A. Vagin alexei@ysbl.york.ac.uk Fortran_77 http://www.ccp4.ac.uk/dist/html/molrep.html MOLREP other refinement Axel T. Brunger axel.brunger@yale.edu Fortran_77 http://cns.csb.yale.edu/v1.1/ CNS package data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data collection Blu-Ice data reduction MOSFLM The structure of FIV 12S protease in complex with TL-3 1 N N 2 N N 3 N N A ARG 41 A ARG 41 HELX_P A PHE 43 A PHE 43 5 1 3 A GLY 103 A GLY 103 HELX_P A ILE 108 A ILE 108 1 2 6 HYDROLASE/HYDROLASE INHIBITOR retroviral, protease, aspartyl, feline, HYDROLASE-HYDROLASE INHIBITOR COMPLEX POL_FIVPE UNP 1 39 P16088 YNKVGTTTTLEKRPEILIFVNGYPIKFLLDTGADITILNRRDFQVKNSIENGRQNMIGVGGGKRGTNYINVHLEIRDENY KTQCIFGNVCVLEDNSLIQPLLGRDNMIKFNIRLVM 39 154 2HAH 1 116 P16088 A 1 1 116 1 ILE engineered mutation VAL 37 2HAH A P16088 UNP 75 37 1 ASN engineered mutation MET 55 2HAH A P16088 UNP 93 55 1 MET engineered mutation ILE 56 2HAH A P16088 UNP 94 56 1 ILE engineered mutation GLY 57 2HAH A P16088 UNP 95 57 1 VAL engineered mutation ILE 59 2HAH A P16088 UNP 97 59 1 GLY engineered mutation PHE 62 2HAH A P16088 UNP 100 62 1 LYS engineered mutation ILE 63 2HAH A P16088 UNP 101 63 1 LEU engineered mutation THR 97 2HAH A P16088 UNP 135 97 1 ILE engineered mutation PRO 98 2HAH A P16088 UNP 136 98 1 GLN engineered mutation VAL 99 2HAH A P16088 UNP 137 99 1 PRO engineered mutation ASN 100 2HAH A P16088 UNP 138 100 1 LEU engineered mutation ILE 101 2HAH A P16088 UNP 139 101 8 anti-parallel anti-parallel parallel anti-parallel parallel anti-parallel anti-parallel A ILE 49 A ILE 49 A GLY 58 A GLY 58 A GLY 61 A GLY 61 A ILE 75 A ILE 75 A GLN 83 A GLN 83 A LEU 92 A LEU 92 A VAL 37 A VAL 37 A ASN 39 A ASN 39 A ASN 100 A ASN 100 A LEU 102 A LEU 102 A TYR 23 A TYR 23 A LEU 29 A LEU 29 A GLU 15 A GLU 15 A VAL 20 A VAL 20 A GLY 61 A GLY 61 A ILE 75 A ILE 75 BINDING SITE FOR RESIDUE 3TL A 201 A 3TL 201 Software 19 A ARG 13 A ARG 13 19 5_553 A PRO 24 A PRO 24 19 2_655 A ILE 25 A ILE 25 19 2_655 A ASP 30 A ASP 30 19 1_555 A ASP 30 A ASP 30 19 5_553 A GLY 32 A GLY 32 19 1_555 A ALA 33 A ALA 33 19 1_555 A ASP 34 A ASP 34 19 1_555 A GLN 54 A GLN 54 19 1_555 A MET 55 A MET 55 19 1_555 A ILE 56 A ILE 56 19 1_555 A GLY 57 A GLY 57 19 1_555 A GLY 58 A GLY 58 19 1_555 A ILE 59 A ILE 59 19 1_555 A ILE 59 A ILE 59 19 5_553 A PRO 98 A PRO 98 19 5_553 A VAL 99 A VAL 99 19 5_553 A HOH 231 C HOH 19 5_553 A HOH 231 C HOH 19 1_555 152 P 31 2 1