0.030935
-0.014563
-0.010387
0.000000
0.032406
-0.002203
0.000000
0.000000
0.030678
0.00000
0.00000
0.00000
Lim, D.
Gregorio, G.G.
Bingman, C.A.
Martinez-Hackert, E.
Hendrickson, W.A.
Goff, S.P.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
1
78.21
69.85
64.79
32.326
34.107
34.802
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
O4 S -2
96.063
SULFATE ION
non-polymer
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
US
J.Virol.
JOVIAM
0825
0022-538X
80
8379
8389
10.1128/JVI.00750-06
16912289
Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain.
2006
10.2210/pdb2hb5/pdb
pdb_00002hb5
1.000000
0.000000
0.000000
0.000000
1.000000
0.000000
0.000000
0.000000
1.000000
0.00000
0.00000
0.00000
100
1
CCD
ADSC QUANTUM 4
Si 111 Channel
MAD
M
x-ray
1
0.98793
1.0
0.97938
1.0
0.97908
1.0
0.96866
1.0
X4A
NSLS
0.98793, 0.97938, 0.97908, 0.96866
SYNCHROTRON
NSLS BEAMLINE X4A
17787.809
Reverse transcriptase/ribonuclease H
3.1.26.4
RNase H Domain (Residues 618-791)
1
man
polymer
24.305
MAGNESIUM ION
1
syn
non-polymer
96.063
SULFATE ION
1
syn
non-polymer
18.015
water
148
nat
water
no
yes
GILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALK(MSE)
AEGKKLNVYTDSRYAFATAHLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNR(MSE)ADQAARKA
AITETPDTSTLL
GILAEAHGTRPDLTDQPLPDADHTWYTDGSSLLQEGQRKAGAAVTTETEVIWAKALPAGTSAQRAELIALTQALKMAEGK
KLNVYTDSRYAFATAHLTSEGKEIKNKDEILALLKALFLPKRLSIIHCPGHQKGHSAEARGNRMADQAARKAAITETPDT
STLL
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Gammaretrovirus
Murine leukemia virus
Escherichia
sample
POL
11801
Moloney murine leukemia virus
562
Escherichia coli
1
1.83
32.69
VAPOR DIFFUSION, HANGING DROP
5.0
15% PEG 4000, 0.1M ammonium sulfate, 150mM NaCl, 1.25%PEG-MME 550, 1% 2-propanol, 0.5mM zinc sulfate, 5mM MES , pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
293
software
audit_author
citation_author
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Version format compliance
Refinement description
Database references
Derived calculations
Structure summary
1
0
2006-08-29
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-03-22
_audit_author.name
_citation_author.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
RCSB
Y
RCSB
2006-06-13
REL
REL
MG
MAGNESIUM ION
SO4
SULFATE ION
HOH
water
MG2
1
2
MG
MG
200
A
SO4
1
3
SO4
SO4
201
A
WAT
1
4
HOH
HOH
202
A
WAT
2
4
HOH
HOH
203
A
WAT
1
4
HOH
HOH
204
A
WAT
2
4
HOH
HOH
205
A
WAT
3
4
HOH
HOH
206
A
WAT
4
4
HOH
HOH
207
A
WAT
5
4
HOH
HOH
208
A
WAT
6
4
HOH
HOH
209
A
WAT
7
4
HOH
HOH
210
A
WAT
8
4
HOH
HOH
211
A
WAT
9
4
HOH
HOH
212
A
WAT
10
4
HOH
HOH
213
A
WAT
11
4
HOH
HOH
214
A
WAT
12
4
HOH
HOH
215
A
WAT
13
4
HOH
HOH
216
A
WAT
14
4
HOH
HOH
217
A
WAT
15
4
HOH
HOH
218
A
WAT
16
4
HOH
HOH
219
A
WAT
17
4
HOH
HOH
220
A
WAT
18
4
HOH
HOH
221
A
WAT
19
4
HOH
HOH
222
A
WAT
20
4
HOH
HOH
223
A
WAT
21
4
HOH
HOH
224
A
WAT
22
4
HOH
HOH
225
A
WAT
23
4
HOH
HOH
226
A
WAT
24
4
HOH
HOH
227
A
WAT
25
4
HOH
HOH
228
A
WAT
26
4
HOH
HOH
229
A
WAT
27
4
HOH
HOH
230
A
WAT
28
4
HOH
HOH
231
A
WAT
29
4
HOH
HOH
232
A
WAT
30
4
HOH
HOH
233
A
WAT
31
4
HOH
HOH
234
A
WAT
32
4
HOH
HOH
235
A
WAT
33
4
HOH
HOH
236
A
WAT
34
4
HOH
HOH
237
A
WAT
35
4
HOH
HOH
238
A
WAT
36
4
HOH
HOH
239
A
WAT
37
4
HOH
HOH
240
A
WAT
38
4
HOH
HOH
241
A
WAT
39
4
HOH
HOH
242
A
WAT
40
4
HOH
HOH
243
A
WAT
41
4
HOH
HOH
244
A
WAT
42
4
HOH
HOH
245
A
WAT
43
4
HOH
HOH
246
A
WAT
44
4
HOH
HOH
247
A
WAT
45
4
HOH
HOH
248
A
WAT
46
4
HOH
HOH
249
A
WAT
47
4
HOH
HOH
250
A
WAT
48
4
HOH
HOH
251
A
WAT
49
4
HOH
HOH
252
A
WAT
50
4
HOH
HOH
253
A
WAT
51
4
HOH
HOH
254
A
WAT
52
4
HOH
HOH
255
A
WAT
53
4
HOH
HOH
256
A
WAT
54
4
HOH
HOH
257
A
WAT
55
4
HOH
HOH
258
A
WAT
56
4
HOH
HOH
259
A
WAT
57
4
HOH
HOH
260
A
WAT
58
4
HOH
HOH
261
A
WAT
59
4
HOH
HOH
262
A
WAT
60
4
HOH
HOH
263
A
WAT
61
4
HOH
HOH
264
A
WAT
62
4
HOH
HOH
265
A
WAT
63
4
HOH
HOH
266
A
WAT
64
4
HOH
HOH
267
A
WAT
65
4
HOH
HOH
268
A
WAT
66
4
HOH
HOH
269
A
WAT
67
4
HOH
HOH
270
A
WAT
68
4
HOH
HOH
271
A
WAT
69
4
HOH
HOH
272
A
WAT
70
4
HOH
HOH
273
A
WAT
71
4
HOH
HOH
274
A
WAT
72
4
HOH
HOH
275
A
WAT
73
4
HOH
HOH
276
A
WAT
74
4
HOH
HOH
277
A
WAT
75
4
HOH
HOH
278
A
WAT
76
4
HOH
HOH
279
A
WAT
77
4
HOH
HOH
280
A
WAT
78
4
HOH
HOH
281
A
WAT
79
4
HOH
HOH
282
A
WAT
80
4
HOH
HOH
283
A
WAT
81
4
HOH
HOH
284
A
WAT
82
4
HOH
HOH
285
A
WAT
83
4
HOH
HOH
286
A
WAT
84
4
HOH
HOH
287
A
WAT
85
4
HOH
HOH
288
A
WAT
86
4
HOH
HOH
289
A
WAT
87
4
HOH
HOH
290
A
WAT
88
4
HOH
HOH
291
A
WAT
89
4
HOH
HOH
292
A
WAT
90
4
HOH
HOH
293
A
WAT
91
4
HOH
HOH
294
A
WAT
92
4
HOH
HOH
295
A
WAT
93
4
HOH
HOH
296
A
WAT
94
4
HOH
HOH
297
A
WAT
95
4
HOH
HOH
298
A
WAT
96
4
HOH
HOH
299
A
WAT
97
4
HOH
HOH
300
A
WAT
98
4
HOH
HOH
301
A
WAT
99
4
HOH
HOH
302
A
WAT
100
4
HOH
HOH
303
A
WAT
101
4
HOH
HOH
304
A
WAT
102
4
HOH
HOH
305
A
WAT
103
4
HOH
HOH
306
A
WAT
104
4
HOH
HOH
307
A
WAT
105
4
HOH
HOH
308
A
WAT
106
4
HOH
HOH
309
A
WAT
107
4
HOH
HOH
310
A
WAT
108
4
HOH
HOH
311
A
WAT
109
4
HOH
HOH
312
A
WAT
110
4
HOH
HOH
313
A
WAT
111
4
HOH
HOH
314
A
WAT
112
4
HOH
HOH
315
A
WAT
113
4
HOH
HOH
316
A
WAT
114
4
HOH
HOH
317
A
WAT
115
4
HOH
HOH
318
A
WAT
116
4
HOH
HOH
319
A
WAT
117
4
HOH
HOH
320
A
WAT
118
4
HOH
HOH
321
A
WAT
119
4
HOH
HOH
322
A
WAT
120
4
HOH
HOH
323
A
WAT
121
4
HOH
HOH
324
A
WAT
122
4
HOH
HOH
325
A
WAT
123
4
HOH
HOH
326
A
WAT
124
4
HOH
HOH
327
A
WAT
125
4
HOH
HOH
328
A
WAT
126
4
HOH
HOH
329
A
WAT
127
4
HOH
HOH
330
A
WAT
128
4
HOH
HOH
331
A
WAT
129
4
HOH
HOH
332
A
WAT
130
4
HOH
HOH
333
A
WAT
131
4
HOH
HOH
334
A
WAT
132
4
HOH
HOH
335
A
WAT
133
4
HOH
HOH
336
A
WAT
134
4
HOH
HOH
337
A
WAT
135
4
HOH
HOH
338
A
WAT
136
4
HOH
HOH
339
A
WAT
137
4
HOH
HOH
340
A
WAT
138
4
HOH
HOH
341
A
WAT
139
4
HOH
HOH
342
A
WAT
140
4
HOH
HOH
343
A
WAT
141
4
HOH
HOH
344
A
WAT
142
4
HOH
HOH
345
A
WAT
143
4
HOH
HOH
346
A
WAT
144
4
HOH
HOH
347
A
WAT
145
4
HOH
HOH
348
A
WAT
146
4
HOH
HOH
349
A
n
1
1
A
n
2
2
A
n
3
3
A
n
4
4
A
n
5
5
A
n
6
6
A
GLY
7
n
7
HIS
7
A
GLY
8
n
8
GLY
8
A
THR
9
n
9
THR
9
A
ARG
10
n
10
ARG
10
A
PRO
11
n
11
PRO
11
A
ASP
12
n
12
ASP
12
A
LEU
13
n
13
LEU
13
A
THR
14
n
14
THR
14
A
ASP
15
n
15
ASP
15
A
GLN
16
n
16
GLN
16
A
PRO
17
n
17
PRO
17
A
LEU
18
n
18
LEU
18
A
PRO
19
n
19
PRO
19
A
ASP
20
n
20
ASP
20
A
ALA
21
n
21
ALA
21
A
ASP
22
n
22
ASP
22
A
HIS
23
n
23
HIS
23
A
THR
24
n
24
THR
24
A
TRP
25
n
25
TRP
25
A
TYR
26
n
26
TYR
26
A
THR
27
n
27
THR
27
A
ASP
28
n
28
ASP
28
A
GLY
29
n
29
GLY
29
A
SER
30
n
30
SER
30
A
SER
31
n
31
SER
31
A
LEU
32
n
32
LEU
32
A
LEU
33
n
33
LEU
33
A
GLN
34
n
34
GLN
34
A
GLU
35
n
35
GLU
35
A
GLY
36
n
36
GLY
36
A
GLN
37
n
37
GLN
37
A
ARG
38
n
38
ARG
38
A
LYS
39
n
39
LYS
39
A
ALA
40
n
40
ALA
40
A
GLY
41
n
41
GLY
41
A
ALA
42
n
42
ALA
42
A
ALA
43
n
43
ALA
43
A
VAL
44
n
44
VAL
44
A
THR
45
n
45
THR
45
A
THR
46
n
46
THR
46
A
GLU
47
n
47
GLU
47
A
THR
48
n
48
THR
48
A
GLU
49
n
49
GLU
49
A
VAL
50
n
50
VAL
50
A
ILE
51
n
51
ILE
51
A
TRP
52
n
52
TRP
52
A
ALA
53
n
53
ALA
53
A
LYS
54
n
54
LYS
54
A
ALA
55
n
55
ALA
55
A
LEU
56
n
56
LEU
56
A
PRO
57
n
57
PRO
57
A
ALA
58
n
58
ALA
58
A
GLY
59
n
59
GLY
59
A
THR
60
n
60
THR
60
A
SER
61
n
61
SER
61
A
ALA
62
n
62
ALA
62
A
GLN
63
n
63
GLN
63
A
ARG
64
n
64
ARG
64
A
ALA
65
n
65
ALA
65
A
GLU
66
n
66
GLU
66
A
LEU
67
n
67
LEU
67
A
ILE
68
n
68
ILE
68
A
ALA
69
n
69
ALA
69
A
LEU
70
n
70
LEU
70
A
THR
71
n
71
THR
71
A
GLN
72
n
72
GLN
72
A
ALA
73
n
73
ALA
73
A
LEU
74
n
74
LEU
74
A
LYS
75
n
75
LYS
75
A
MSE
76
n
76
MSE
76
A
ALA
77
n
77
ALA
77
A
GLU
78
n
78
GLU
78
A
GLY
79
n
79
GLY
79
A
LYS
80
n
80
LYS
80
A
LYS
81
n
81
LYS
81
A
LEU
82
n
82
LEU
82
A
ASN
83
n
83
ASN
83
A
VAL
84
n
84
VAL
84
A
TYR
85
n
85
TYR
85
A
THR
86
n
86
THR
86
A
ASP
87
n
87
ASP
87
A
SER
88
n
88
SER
88
A
ARG
89
n
89
ARG
89
A
TYR
90
n
90
TYR
90
A
ALA
91
n
91
ALA
91
A
PHE
92
n
92
PHE
92
A
ALA
93
n
93
ALA
93
A
THR
94
n
94
THR
94
A
ALA
95
n
95
ALA
95
A
HIS
96
n
96
HIS
96
A
LEU
97
n
97
LEU
97
A
THR
98
n
98
THR
98
A
SER
99
n
99
SER
99
A
GLU
100
n
100
GLU
100
A
GLY
101
n
101
GLY
101
A
LYS
102
n
102
LYS
102
A
GLU
103
n
103
GLU
103
A
ILE
104
n
104
ILE
104
A
LYS
105
n
105
LYS
105
A
ASN
106
n
106
ASN
106
A
LYS
107
n
107
LYS
107
A
ASP
108
n
108
ASP
108
A
GLU
109
n
109
GLU
109
A
ILE
110
n
110
ILE
110
A
LEU
111
n
111
LEU
111
A
ALA
112
n
112
ALA
112
A
LEU
113
n
113
LEU
113
A
LEU
114
n
114
LEU
114
A
LYS
115
n
115
LYS
115
A
ALA
116
n
116
ALA
116
A
LEU
117
n
117
LEU
117
A
PHE
118
n
118
PHE
118
A
LEU
119
n
119
LEU
119
A
PRO
120
n
120
PRO
120
A
LYS
121
n
121
LYS
121
A
ARG
122
n
122
ARG
122
A
LEU
123
n
123
LEU
123
A
SER
124
n
124
SER
124
A
ILE
125
n
125
ILE
125
A
ILE
126
n
126
ILE
126
A
HIS
127
n
127
HIS
127
A
CYS
128
n
128
CYS
128
A
n
129
129
A
n
130
130
A
n
131
131
A
n
132
132
A
n
133
133
A
GLY
134
n
134
GLY
134
A
HIS
135
n
135
HIS
135
A
SER
136
n
136
SER
136
A
ALA
137
n
137
ALA
137
A
GLU
138
n
138
GLU
138
A
ALA
139
n
139
ALA
139
A
ARG
140
n
140
ARG
140
A
GLY
141
n
141
GLY
141
A
ASN
142
n
142
ASN
142
A
ARG
143
n
143
ARG
143
A
MSE
144
n
144
MSE
144
A
ALA
145
n
145
ALA
145
A
ASP
146
n
146
ASP
146
A
GLN
147
n
147
GLN
147
A
ALA
148
n
148
ALA
148
A
ALA
149
n
149
ALA
149
A
ARG
150
n
150
ARG
150
A
LYS
151
n
151
LYS
151
A
ALA
152
n
152
ALA
152
A
ALA
153
n
153
ALA
153
A
ILE
154
n
154
ILE
154
A
THR
155
n
155
THR
155
A
GLU
156
n
156
GLU
156
A
THR
157
n
157
THR
157
A
PRO
158
n
158
PRO
158
A
ASP
159
n
159
ASP
159
A
ALA
160
n
160
THR
160
A
SER
161
n
161
SER
161
A
n
162
162
A
n
163
163
A
n
164
164
A
author_and_software_defined_assembly
PISA
1
monomeric
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
A
GLU
66
A
A
OE2
GLU
66
1_555
110.8
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
A
ASP
87
A
OD2
ASP
87
1_555
108.1
A
GLU
66
A
A
OE2
GLU
66
1_555
A
MG
200
B
MG
MG
1_555
A
ASP
87
A
OD2
ASP
87
1_555
100.6
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
A
ASP
87
A
OD1
ASP
87
1_555
86.1
A
GLU
66
A
A
OE2
GLU
66
1_555
A
MG
200
B
MG
MG
1_555
A
ASP
87
A
OD1
ASP
87
1_555
151.3
A
ASP
87
A
OD2
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
A
ASP
87
A
OD1
ASP
87
1_555
51.2
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
202
D
O
HOH
1_555
67.3
A
GLU
66
A
A
OE2
GLU
66
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
202
D
O
HOH
1_555
137.5
A
ASP
87
A
OD2
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
202
D
O
HOH
1_555
120.8
A
ASP
87
A
OD1
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
202
D
O
HOH
1_555
69.8
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
75.6
A
GLU
66
A
A
OE2
GLU
66
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
76.9
A
ASP
87
A
OD2
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
176.2
A
ASP
87
A
OD1
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
131.0
A
HOH
202
D
O
HOH
1_555
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
61.3
A
MSE
76
SELENOMETHIONINE
A
MSE
76
MET
A
MSE
144
SELENOMETHIONINE
A
MSE
144
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
TRP
52
A
O
TRP
52
A
N
VAL
44
A
N
VAL
44
A
O
GLY
41
A
O
GLY
41
A
N
SER
30
A
N
SER
30
A
N
TRP
25
A
N
TRP
25
A
O
TYR
85
A
O
TYR
85
A
N
VAL
84
A
N
VAL
84
A
O
ILE
126
A
O
ILE
126
1
A
CB
HIS
7
A
CB
HIS
7
1
Y
1
A
CG
HIS
7
A
CG
HIS
7
1
Y
1
A
ND1
HIS
7
A
ND1
HIS
7
1
Y
1
A
CD2
HIS
7
A
CD2
HIS
7
1
Y
1
A
CE1
HIS
7
A
CE1
HIS
7
1
Y
1
A
NE2
HIS
7
A
NE2
HIS
7
1
Y
1
A
OG1
THR
160
A
OG1
THR
160
1
Y
1
A
CG2
THR
160
A
CG2
THR
160
1
Y
1
A
GLY
1
A
GLY
1
1
Y
1
A
ILE
2
A
ILE
2
1
Y
1
A
LEU
3
A
LEU
3
1
Y
1
A
ALA
4
A
ALA
4
1
Y
1
A
GLU
5
A
GLU
5
1
Y
1
A
ALA
6
A
ALA
6
1
Y
1
A
PRO
129
A
PRO
129
1
Y
1
A
GLY
130
A
GLY
130
1
Y
1
A
HIS
131
A
HIS
131
1
Y
1
A
GLN
132
A
GLN
132
1
Y
1
A
LYS
133
A
LYS
133
1
Y
1
A
THR
162
A
THR
162
1
Y
1
A
LEU
163
A
LEU
163
1
Y
1
A
LEU
164
A
LEU
164
1
Y
0.2209
0.1955
1.59
21.66
1593
15825
15825
9.4
93.4
RANDOM
1
THROUGHOUT
0.0
MAD
Engh & Huber
1.59
21.66
148
1383
6
0
1229
0.005344
1.26072
1.59
21.66
2HB5
15825
15825
0.0
0.0
1
93.4
1.59
1.66
91.0
data collection
ADSC
data reduction
DENZO
phasing
SnB
refinement
CNS
1.1
data scaling
SCALEPACK
Crystal Structure of the Moloney Murine Leukemia Virus RNase H Domain
1
N
N
2
N
N
3
N
N
4
N
N
A
SER
61
A
SER
61
HELX_P
A
ALA
77
A
ALA
77
1
1
17
A
SER
88
A
SER
88
HELX_P
A
ALA
95
A
ALA
95
1
2
8
A
ASN
106
A
ASN
106
HELX_P
A
LEU
117
A
LEU
117
1
3
12
A
SER
136
A
SER
136
HELX_P
A
GLU
156
A
GLU
156
1
4
21
covale
1.329
both
A
A
LYS
75
A
C
LYS
75
1_555
A
MSE
76
A
N
MSE
76
1_555
covale
1.329
both
B
A
LYS
75
A
C
LYS
75
1_555
A
MSE
76
A
N
MSE
76
1_555
covale
1.331
both
A
MSE
76
A
C
MSE
76
1_555
A
ALA
77
A
N
ALA
77
1_555
covale
1.329
both
A
ARG
143
A
C
ARG
143
1_555
A
MSE
144
A
N
MSE
144
1_555
covale
1.328
both
A
MSE
144
A
C
MSE
144
1_555
A
ALA
145
A
N
ALA
145
1_555
metalc
2.410
A
ASP
28
A
OD2
ASP
28
1_555
A
MG
200
B
MG
MG
1_555
metalc
2.378
A
A
GLU
66
A
OE2
GLU
66
1_555
A
MG
200
B
MG
MG
1_555
metalc
2.022
A
ASP
87
A
OD2
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
metalc
2.795
A
ASP
87
A
OD1
ASP
87
1_555
A
MG
200
B
MG
MG
1_555
metalc
2.496
A
MG
200
B
MG
MG
1_555
A
HOH
202
D
O
HOH
1_555
metalc
2.601
A
MG
200
B
MG
MG
1_555
A
HOH
203
D
O
HOH
1_555
HYDROLASE
RNase H, HYDROLASE
POL_MLVMO
UNP
1
618
P03355
618
791
2HB5
2
164
P03355
A
1
2
164
1
cloning artifact
GLY
1
2HB5
A
P03355
UNP
1
1
MET
modified residue
MSE
76
2HB5
A
P03355
UNP
692
76
1
ILE
deletion
2HB5
A
P03355
UNP
713
1
HIS
deletion
2HB5
A
P03355
UNP
714
1
GLY
deletion
2HB5
A
P03355
UNP
715
1
GLU
deletion
2HB5
A
P03355
UNP
716
1
ILE
deletion
2HB5
A
P03355
UNP
717
1
TYR
deletion
2HB5
A
P03355
UNP
718
1
ARG
deletion
2HB5
A
P03355
UNP
719
1
ARG
deletion
2HB5
A
P03355
UNP
720
1
ARG
deletion
2HB5
A
P03355
UNP
721
1
GLY
deletion
2HB5
A
P03355
UNP
722
1
LEU
deletion
2HB5
A
P03355
UNP
723
1
MET
modified residue
MSE
144
2HB5
A
P03355
UNP
771
144
5
anti-parallel
anti-parallel
parallel
parallel
A
VAL
50
A
VAL
50
A
LEU
56
A
LEU
56
A
GLN
37
A
GLN
37
A
THR
45
A
THR
45
A
HIS
23
A
HIS
23
A
GLN
34
A
GLN
34
A
LYS
81
A
LYS
81
A
THR
86
A
THR
86
A
ARG
122
A
ARG
122
A
HIS
127
A
HIS
127
BINDING SITE FOR RESIDUE MG A 200
A
MG
200
Software
5
BINDING SITE FOR RESIDUE SO4 A 201
A
SO4
201
Software
10
A
ASP
28
A
ASP
28
5
1_555
A
GLU
66
A
GLU
66
5
1_555
A
ASP
87
A
ASP
87
5
1_555
A
HOH
202
D
HOH
5
1_555
A
HOH
203
D
HOH
5
1_555
A
ARG
64
A
ARG
64
10
1_555
A
LYS
105
A
LYS
105
10
1_555
A
ASN
106
A
ASN
106
10
1_555
A
LYS
107
A
LYS
107
10
1_555
A
GLY
134
A
GLY
134
10
1_456
A
HIS
135
A
HIS
135
10
1_456
A
SER
136
A
SER
136
10
1_456
A
HOH
204
D
HOH
10
1_555
A
HOH
229
D
HOH
10
1_456
A
HOH
323
D
HOH
10
1_555
1
P 1