0.02649
0.00000
0.00000
0.00000
0.01397
0.00000
0.00000
0.00000
0.01202
0.00000
0.00000
0.00000
Joint Center for Structural Genomics (JCSG)
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
4
90.000
90.000
90.000
37.750
71.590
83.200
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
Cl -1
35.453
CHLORIDE ION
non-polymer
C3 H7 N O2 S
121.158
y
CYSTEINE
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
Mg 2
24.305
MAGNESIUM ION
non-polymer
C5 H11 N O2 Se
196.106
n
SELENOMETHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
To be published
0353
Crystal structure of hydrolase haloacid dehalogenase-like family (np_662590.1) from Chlorobium tepidum TLS at 1.80 A resolution
10.2210/pdb2hcf/pdb
pdb_00002hcf
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
1.00000
0.00000
0.00000
0.00000
100
1
Flat collimating mirror, toroid focusing mirror
CCD
2006-06-05
MARMOSAIC 325 mm CCD
Double crystal monochromator
MAD
M
x-ray
1
0.91837
1.0
0.97915
1.0
0.97929
1.0
BL9-2
SSRL
0.91837, 0.97915, 0.97929
SYNCHROTRON
SSRL BEAMLINE BL9-2
26194.895
Hydrolase, haloacid dehalogenase-like family
1
man
polymer
24.305
MAGNESIUM ION
2
syn
non-polymer
35.453
CHLORIDE ION
1
syn
non-polymer
18.015
water
235
nat
water
no
yes
G(MSE)SRTLVLFDIDGTLLKVES(MSE)NRRVLADALIEVYGTEGSTGSHDFSGK(MSE)DGAIIYEVLSNVGLERAEI
ADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPFGAFADDALD
RNELPHIALERARR(MSE)TGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFT(MSE)EELARHKPGTLFKNFAE
TDEVLASILTPKHS
GMSRTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYI
ALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERA
RRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLASILTPKHS
A
366871
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
Chlorobaculum
Escherichia
sample
np_662590.1
1097
Chlorobaculum tepidum
562
Escherichia coli
Plasmid
1
2.01
38.41
VAPOR DIFFUSION, SITTING DROP, NANODROP
8.5
0.2M MgCl2, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
277
Joint Center for Structural Genomics
JCSG
PSI, Protein Structure Initiative
software
database_2
pdbx_struct_conn_angle
struct_conn
struct_ref_seq_dif
struct_site
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Database references
Derived calculations
1
0
2006-08-15
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2023-01-25
_software.classification
_software.name
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.value
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_ref_seq_dif.details
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
SEQUENCE
THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION
TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV
PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE
TARGET SEQUENCE.
Y
RCSB
Y
RCSB
2006-06-16
REL
REL
MG
MAGNESIUM ION
CL
CHLORIDE ION
HOH
water
MG
300
2
MG
MG
300
A
MG
1
2
MG
MG
301
A
CL
2
3
CL
CL
302
A
HOH
3
4
HOH
HOH
303
A
HOH
4
4
HOH
HOH
304
A
HOH
5
4
HOH
HOH
305
A
HOH
6
4
HOH
HOH
306
A
HOH
7
4
HOH
HOH
307
A
HOH
8
4
HOH
HOH
308
A
HOH
9
4
HOH
HOH
309
A
HOH
10
4
HOH
HOH
310
A
HOH
11
4
HOH
HOH
311
A
HOH
12
4
HOH
HOH
312
A
HOH
13
4
HOH
HOH
313
A
HOH
14
4
HOH
HOH
314
A
HOH
15
4
HOH
HOH
315
A
HOH
16
4
HOH
HOH
316
A
HOH
17
4
HOH
HOH
317
A
HOH
18
4
HOH
HOH
318
A
HOH
19
4
HOH
HOH
319
A
HOH
20
4
HOH
HOH
320
A
HOH
21
4
HOH
HOH
321
A
HOH
22
4
HOH
HOH
322
A
HOH
23
4
HOH
HOH
323
A
HOH
24
4
HOH
HOH
324
A
HOH
25
4
HOH
HOH
325
A
HOH
26
4
HOH
HOH
326
A
HOH
27
4
HOH
HOH
327
A
HOH
28
4
HOH
HOH
328
A
HOH
29
4
HOH
HOH
329
A
HOH
30
4
HOH
HOH
330
A
HOH
31
4
HOH
HOH
331
A
HOH
32
4
HOH
HOH
332
A
HOH
33
4
HOH
HOH
333
A
HOH
34
4
HOH
HOH
334
A
HOH
35
4
HOH
HOH
335
A
HOH
36
4
HOH
HOH
336
A
HOH
37
4
HOH
HOH
337
A
HOH
38
4
HOH
HOH
338
A
HOH
39
4
HOH
HOH
339
A
HOH
40
4
HOH
HOH
340
A
HOH
41
4
HOH
HOH
341
A
HOH
42
4
HOH
HOH
342
A
HOH
43
4
HOH
HOH
343
A
HOH
44
4
HOH
HOH
344
A
HOH
45
4
HOH
HOH
345
A
HOH
46
4
HOH
HOH
346
A
HOH
47
4
HOH
HOH
347
A
HOH
48
4
HOH
HOH
348
A
HOH
49
4
HOH
HOH
349
A
HOH
50
4
HOH
HOH
350
A
HOH
51
4
HOH
HOH
351
A
HOH
52
4
HOH
HOH
352
A
HOH
53
4
HOH
HOH
353
A
HOH
54
4
HOH
HOH
354
A
HOH
55
4
HOH
HOH
355
A
HOH
56
4
HOH
HOH
356
A
HOH
57
4
HOH
HOH
357
A
HOH
58
4
HOH
HOH
358
A
HOH
59
4
HOH
HOH
359
A
HOH
60
4
HOH
HOH
360
A
HOH
61
4
HOH
HOH
361
A
HOH
62
4
HOH
HOH
362
A
HOH
63
4
HOH
HOH
363
A
HOH
64
4
HOH
HOH
364
A
HOH
65
4
HOH
HOH
365
A
HOH
66
4
HOH
HOH
366
A
HOH
67
4
HOH
HOH
367
A
HOH
68
4
HOH
HOH
368
A
HOH
69
4
HOH
HOH
369
A
HOH
70
4
HOH
HOH
370
A
HOH
71
4
HOH
HOH
371
A
HOH
72
4
HOH
HOH
372
A
HOH
73
4
HOH
HOH
373
A
HOH
74
4
HOH
HOH
374
A
HOH
75
4
HOH
HOH
375
A
HOH
76
4
HOH
HOH
376
A
HOH
77
4
HOH
HOH
377
A
HOH
78
4
HOH
HOH
378
A
HOH
79
4
HOH
HOH
379
A
HOH
80
4
HOH
HOH
380
A
HOH
81
4
HOH
HOH
381
A
HOH
82
4
HOH
HOH
382
A
HOH
83
4
HOH
HOH
383
A
HOH
84
4
HOH
HOH
384
A
HOH
85
4
HOH
HOH
385
A
HOH
86
4
HOH
HOH
386
A
HOH
87
4
HOH
HOH
387
A
HOH
88
4
HOH
HOH
388
A
HOH
89
4
HOH
HOH
389
A
HOH
90
4
HOH
HOH
390
A
HOH
91
4
HOH
HOH
391
A
HOH
92
4
HOH
HOH
392
A
HOH
93
4
HOH
HOH
393
A
HOH
94
4
HOH
HOH
394
A
HOH
95
4
HOH
HOH
395
A
HOH
96
4
HOH
HOH
396
A
HOH
97
4
HOH
HOH
397
A
HOH
98
4
HOH
HOH
398
A
HOH
99
4
HOH
HOH
399
A
HOH
100
4
HOH
HOH
400
A
HOH
101
4
HOH
HOH
401
A
HOH
102
4
HOH
HOH
402
A
HOH
103
4
HOH
HOH
403
A
HOH
104
4
HOH
HOH
404
A
HOH
105
4
HOH
HOH
405
A
HOH
106
4
HOH
HOH
406
A
HOH
107
4
HOH
HOH
407
A
HOH
108
4
HOH
HOH
408
A
HOH
109
4
HOH
HOH
409
A
HOH
110
4
HOH
HOH
410
A
HOH
111
4
HOH
HOH
411
A
HOH
112
4
HOH
HOH
412
A
HOH
113
4
HOH
HOH
413
A
HOH
114
4
HOH
HOH
414
A
HOH
115
4
HOH
HOH
415
A
HOH
116
4
HOH
HOH
416
A
HOH
117
4
HOH
HOH
417
A
HOH
118
4
HOH
HOH
418
A
HOH
119
4
HOH
HOH
419
A
HOH
120
4
HOH
HOH
420
A
HOH
121
4
HOH
HOH
421
A
HOH
122
4
HOH
HOH
422
A
HOH
123
4
HOH
HOH
423
A
HOH
124
4
HOH
HOH
424
A
HOH
125
4
HOH
HOH
425
A
HOH
126
4
HOH
HOH
426
A
HOH
127
4
HOH
HOH
427
A
HOH
128
4
HOH
HOH
428
A
HOH
129
4
HOH
HOH
429
A
HOH
130
4
HOH
HOH
430
A
HOH
131
4
HOH
HOH
431
A
HOH
132
4
HOH
HOH
432
A
HOH
133
4
HOH
HOH
433
A
HOH
134
4
HOH
HOH
434
A
HOH
135
4
HOH
HOH
435
A
HOH
136
4
HOH
HOH
436
A
HOH
137
4
HOH
HOH
437
A
HOH
138
4
HOH
HOH
438
A
HOH
139
4
HOH
HOH
439
A
HOH
140
4
HOH
HOH
440
A
HOH
141
4
HOH
HOH
441
A
HOH
142
4
HOH
HOH
442
A
HOH
143
4
HOH
HOH
443
A
HOH
144
4
HOH
HOH
444
A
HOH
145
4
HOH
HOH
445
A
HOH
146
4
HOH
HOH
446
A
HOH
147
4
HOH
HOH
447
A
HOH
148
4
HOH
HOH
448
A
HOH
149
4
HOH
HOH
449
A
HOH
150
4
HOH
HOH
450
A
HOH
151
4
HOH
HOH
451
A
HOH
152
4
HOH
HOH
452
A
HOH
153
4
HOH
HOH
453
A
HOH
154
4
HOH
HOH
454
A
HOH
155
4
HOH
HOH
455
A
HOH
156
4
HOH
HOH
456
A
HOH
157
4
HOH
HOH
457
A
HOH
158
4
HOH
HOH
458
A
HOH
159
4
HOH
HOH
459
A
HOH
160
4
HOH
HOH
460
A
HOH
161
4
HOH
HOH
461
A
HOH
162
4
HOH
HOH
462
A
HOH
163
4
HOH
HOH
463
A
HOH
164
4
HOH
HOH
464
A
HOH
165
4
HOH
HOH
465
A
HOH
166
4
HOH
HOH
466
A
HOH
167
4
HOH
HOH
467
A
HOH
168
4
HOH
HOH
468
A
HOH
169
4
HOH
HOH
469
A
HOH
170
4
HOH
HOH
470
A
HOH
171
4
HOH
HOH
471
A
HOH
172
4
HOH
HOH
472
A
HOH
173
4
HOH
HOH
473
A
HOH
174
4
HOH
HOH
474
A
HOH
175
4
HOH
HOH
475
A
HOH
176
4
HOH
HOH
476
A
HOH
177
4
HOH
HOH
477
A
HOH
178
4
HOH
HOH
478
A
HOH
179
4
HOH
HOH
479
A
HOH
180
4
HOH
HOH
480
A
HOH
181
4
HOH
HOH
481
A
HOH
182
4
HOH
HOH
482
A
HOH
183
4
HOH
HOH
483
A
HOH
184
4
HOH
HOH
484
A
HOH
185
4
HOH
HOH
485
A
HOH
186
4
HOH
HOH
486
A
HOH
187
4
HOH
HOH
487
A
HOH
188
4
HOH
HOH
488
A
HOH
189
4
HOH
HOH
489
A
HOH
190
4
HOH
HOH
490
A
HOH
191
4
HOH
HOH
491
A
HOH
192
4
HOH
HOH
492
A
HOH
193
4
HOH
HOH
493
A
HOH
194
4
HOH
HOH
494
A
HOH
195
4
HOH
HOH
495
A
HOH
196
4
HOH
HOH
496
A
HOH
197
4
HOH
HOH
497
A
HOH
198
4
HOH
HOH
498
A
HOH
199
4
HOH
HOH
499
A
HOH
200
4
HOH
HOH
500
A
HOH
201
4
HOH
HOH
501
A
HOH
202
4
HOH
HOH
502
A
HOH
203
4
HOH
HOH
503
A
HOH
204
4
HOH
HOH
504
A
HOH
205
4
HOH
HOH
505
A
HOH
206
4
HOH
HOH
506
A
HOH
207
4
HOH
HOH
507
A
HOH
208
4
HOH
HOH
508
A
HOH
209
4
HOH
HOH
509
A
HOH
210
4
HOH
HOH
510
A
HOH
211
4
HOH
HOH
511
A
HOH
212
4
HOH
HOH
512
A
HOH
213
4
HOH
HOH
513
A
HOH
214
4
HOH
HOH
514
A
HOH
215
4
HOH
HOH
515
A
HOH
216
4
HOH
HOH
516
A
HOH
217
4
HOH
HOH
517
A
HOH
218
4
HOH
HOH
518
A
HOH
219
4
HOH
HOH
519
A
HOH
220
4
HOH
HOH
520
A
HOH
221
4
HOH
HOH
521
A
HOH
222
4
HOH
HOH
522
A
HOH
223
4
HOH
HOH
523
A
HOH
224
4
HOH
HOH
524
A
HOH
225
4
HOH
HOH
525
A
HOH
226
4
HOH
HOH
526
A
HOH
227
4
HOH
HOH
527
A
HOH
228
4
HOH
HOH
528
A
HOH
229
4
HOH
HOH
529
A
HOH
230
4
HOH
HOH
530
A
HOH
231
4
HOH
HOH
531
A
HOH
232
4
HOH
HOH
532
A
HOH
233
4
HOH
HOH
533
A
HOH
234
4
HOH
HOH
534
A
HOH
235
4
HOH
HOH
535
A
HOH
236
4
HOH
HOH
536
A
HOH
237
4
HOH
HOH
537
A
n
1
0
A
n
2
1
A
SER
2
n
3
SER
2
A
ARG
3
n
4
ARG
3
A
THR
4
n
5
THR
4
A
LEU
5
n
6
LEU
5
A
VAL
6
n
7
VAL
6
A
LEU
7
n
8
LEU
7
A
PHE
8
n
9
PHE
8
A
ASP
9
n
10
ASP
9
A
ILE
10
n
11
ILE
10
A
ASP
11
n
12
ASP
11
A
GLY
12
n
13
GLY
12
A
THR
13
n
14
THR
13
A
LEU
14
n
15
LEU
14
A
LEU
15
n
16
LEU
15
A
LYS
16
n
17
LYS
16
A
VAL
17
n
18
VAL
17
A
GLU
18
n
19
GLU
18
A
SER
19
n
20
SER
19
A
MSE
20
n
21
MSE
20
A
ASN
21
n
22
ASN
21
A
ARG
22
n
23
ARG
22
A
ARG
23
n
24
ARG
23
A
VAL
24
n
25
VAL
24
A
LEU
25
n
26
LEU
25
A
ALA
26
n
27
ALA
26
A
ASP
27
n
28
ASP
27
A
ALA
28
n
29
ALA
28
A
LEU
29
n
30
LEU
29
A
ILE
30
n
31
ILE
30
A
GLU
31
n
32
GLU
31
A
VAL
32
n
33
VAL
32
A
TYR
33
n
34
TYR
33
A
GLY
34
n
35
GLY
34
A
THR
35
n
36
THR
35
A
GLU
36
n
37
GLU
36
A
GLY
37
n
38
GLY
37
A
SER
38
n
39
SER
38
A
THR
39
n
40
THR
39
A
n
41
40
A
n
42
41
A
n
43
42
A
ASP
43
n
44
ASP
43
A
PHE
44
n
45
PHE
44
A
SER
45
n
46
SER
45
A
GLY
46
n
47
GLY
46
A
LYS
47
n
48
LYS
47
A
MSE
48
n
49
MSE
48
A
ASP
49
n
50
ASP
49
A
GLY
50
n
51
GLY
50
A
ALA
51
n
52
ALA
51
A
ILE
52
n
53
ILE
52
A
ILE
53
n
54
ILE
53
A
TYR
54
n
55
TYR
54
A
GLU
55
n
56
GLU
55
A
VAL
56
n
57
VAL
56
A
LEU
57
n
58
LEU
57
A
SER
58
n
59
SER
58
A
ASN
59
n
60
ASN
59
A
VAL
60
n
61
VAL
60
A
GLY
61
n
62
GLY
61
A
LEU
62
n
63
LEU
62
A
GLU
63
n
64
GLU
63
A
ARG
64
n
65
ARG
64
A
ALA
65
n
66
ALA
65
A
GLU
66
n
67
GLU
66
A
ILE
67
n
68
ILE
67
A
ALA
68
n
69
ALA
68
A
ASP
69
n
70
ASP
69
A
LYS
70
n
71
LYS
70
A
PHE
71
n
72
PHE
71
A
ASP
72
n
73
ASP
72
A
LYS
73
n
74
LYS
73
A
ALA
74
n
75
ALA
74
A
LYS
75
n
76
LYS
75
A
GLU
76
n
77
GLU
76
A
THR
77
n
78
THR
77
A
TYR
78
n
79
TYR
78
A
ILE
79
n
80
ILE
79
A
ALA
80
n
81
ALA
80
A
LEU
81
n
82
LEU
81
A
PHE
82
n
83
PHE
82
A
ARG
83
n
84
ARG
83
A
GLU
84
n
85
GLU
84
A
ARG
85
n
86
ARG
85
A
ALA
86
n
87
ALA
86
A
ARG
87
n
88
ARG
87
A
ARG
88
n
89
ARG
88
A
GLU
89
n
90
GLU
89
A
ASP
90
n
91
ASP
90
A
ILE
91
n
92
ILE
91
A
THR
92
n
93
THR
92
A
LEU
93
n
94
LEU
93
A
LEU
94
n
95
LEU
94
A
GLU
95
n
96
GLU
95
A
GLY
96
n
97
GLY
96
A
VAL
97
n
98
VAL
97
A
ARG
98
n
99
ARG
98
A
GLU
99
n
100
GLU
99
A
LEU
100
n
101
LEU
100
A
LEU
101
n
102
LEU
101
A
ASP
102
n
103
ASP
102
A
ALA
103
n
104
ALA
103
A
LEU
104
n
105
LEU
104
A
SER
105
n
106
SER
105
A
SER
106
n
107
SER
106
A
ARG
107
n
108
ARG
107
A
SER
108
n
109
SER
108
A
ASP
109
n
110
ASP
109
A
VAL
110
n
111
VAL
110
A
LEU
111
n
112
LEU
111
A
LEU
112
n
113
LEU
112
A
GLY
113
n
114
GLY
113
A
LEU
114
n
115
LEU
114
A
LEU
115
n
116
LEU
115
A
THR
116
n
117
THR
116
A
GLY
117
n
118
GLY
117
A
ASN
118
n
119
ASN
118
A
PHE
119
n
120
PHE
119
A
GLU
120
n
121
GLU
120
A
ALA
121
n
122
ALA
121
A
SER
122
n
123
SER
122
A
GLY
123
n
124
GLY
123
A
ARG
124
n
125
ARG
124
A
HIS
125
n
126
HIS
125
A
LYS
126
n
127
LYS
126
A
LEU
127
n
128
LEU
127
A
LYS
128
n
129
LYS
128
A
LEU
129
n
130
LEU
129
A
PRO
130
n
131
PRO
130
A
GLY
131
n
132
GLY
131
A
ILE
132
n
133
ILE
132
A
ASP
133
n
134
ASP
133
A
HIS
134
n
135
HIS
134
A
TYR
135
n
136
TYR
135
A
PHE
136
n
137
PHE
136
A
PRO
137
n
138
PRO
137
A
PHE
138
n
139
PHE
138
A
GLY
139
n
140
GLY
139
A
ALA
140
n
141
ALA
140
A
PHE
141
n
142
PHE
141
A
ALA
142
n
143
ALA
142
A
ASP
143
n
144
ASP
143
A
ASP
144
n
145
ASP
144
A
ALA
145
n
146
ALA
145
A
LEU
146
n
147
LEU
146
A
ASP
147
n
148
ASP
147
A
ARG
148
n
149
ARG
148
A
ASN
149
n
150
ASN
149
A
GLU
150
n
151
GLU
150
A
LEU
151
n
152
LEU
151
A
PRO
152
n
153
PRO
152
A
HIS
153
n
154
HIS
153
A
ILE
154
n
155
ILE
154
A
ALA
155
n
156
ALA
155
A
LEU
156
n
157
LEU
156
A
GLU
157
n
158
GLU
157
A
ARG
158
n
159
ARG
158
A
ALA
159
n
160
ALA
159
A
ARG
160
n
161
ARG
160
A
ARG
161
n
162
ARG
161
A
MSE
162
n
163
MSE
162
A
THR
163
n
164
THR
163
A
GLY
164
n
165
GLY
164
A
ALA
165
n
166
ALA
165
A
ASN
166
n
167
ASN
166
A
TYR
167
n
168
TYR
167
A
SER
168
n
169
SER
168
A
PRO
169
n
170
PRO
169
A
SER
170
n
171
SER
170
A
GLN
171
n
172
GLN
171
A
ILE
172
n
173
ILE
172
A
VAL
173
n
174
VAL
173
A
ILE
174
n
175
ILE
174
A
ILE
175
n
176
ILE
175
A
GLY
176
n
177
GLY
176
A
ASP
177
n
178
ASP
177
A
THR
178
n
179
THR
178
A
GLU
179
n
180
GLU
179
A
HIS
180
n
181
HIS
180
A
ASP
181
n
182
ASP
181
A
ILE
182
n
183
ILE
182
A
ARG
183
n
184
ARG
183
A
CYS
184
n
185
CYS
184
A
ALA
185
n
186
ALA
185
A
ARG
186
n
187
ARG
186
A
GLU
187
n
188
GLU
187
A
LEU
188
n
189
LEU
188
A
ASP
189
n
190
ASP
189
A
ALA
190
n
191
ALA
190
A
ARG
191
n
192
ARG
191
A
SER
192
n
193
SER
192
A
ILE
193
n
194
ILE
193
A
ALA
194
n
195
ALA
194
A
VAL
195
n
196
VAL
195
A
ALA
196
n
197
ALA
196
A
THR
197
n
198
THR
197
A
GLY
198
n
199
GLY
198
A
ASN
199
n
200
ASN
199
A
PHE
200
n
201
PHE
200
A
THR
201
n
202
THR
201
A
MSE
202
n
203
MSE
202
A
GLU
203
n
204
GLU
203
A
GLU
204
n
205
GLU
204
A
LEU
205
n
206
LEU
205
A
ALA
206
n
207
ALA
206
A
ARG
207
n
208
ARG
207
A
HIS
208
n
209
HIS
208
A
LYS
209
n
210
LYS
209
A
PRO
210
n
211
PRO
210
A
GLY
211
n
212
GLY
211
A
THR
212
n
213
THR
212
A
LEU
213
n
214
LEU
213
A
PHE
214
n
215
PHE
214
A
LYS
215
n
216
LYS
215
A
ASN
216
n
217
ASN
216
A
PHE
217
n
218
PHE
217
A
ALA
218
n
219
ALA
218
A
GLU
219
n
220
GLU
219
A
THR
220
n
221
THR
220
A
ASP
221
n
222
ASP
221
A
GLU
222
n
223
GLU
222
A
VAL
223
n
224
VAL
223
A
LEU
224
n
225
LEU
224
A
ALA
225
n
226
ALA
225
A
SER
226
n
227
SER
226
A
ILE
227
n
228
ILE
227
A
LEU
228
n
229
LEU
228
A
THR
229
n
230
THR
229
A
n
231
230
A
n
232
231
A
n
233
232
A
n
234
233
A
0.4396
0.0601
-0.0210
0.8482
0.1049
1.1383
0.0059
-0.0257
0.0104
-0.0382
-0.0041
-0.0069
-0.0322
-0.0215
-0.0018
-0.0707
0.0126
0.0070
-0.0257
-0.0012
-0.0338
refined
22.2390
44.9764
15.7082
X-RAY DIFFRACTION
A
2
A
3
A
39
A
40
X-RAY DIFFRACTION
1
ALL
A
43
A
44
A
229
A
230
X-RAY DIFFRACTION
1
ALL
author_defined_assembly
1
monomeric
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
A
ASP
11
A
O
ASP
12
1_555
85.7
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
A
ASP
177
A
OD1
ASP
178
1_555
91.3
A
ASP
11
A
O
ASP
12
1_555
A
MG
300
B
MG
MG
1_555
A
ASP
177
A
OD1
ASP
178
1_555
91.7
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
313
E
O
HOH
1_555
88.7
A
ASP
11
A
O
ASP
12
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
313
E
O
HOH
1_555
172.7
A
ASP
177
A
OD1
ASP
178
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
313
E
O
HOH
1_555
93.2
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
325
E
O
HOH
1_555
167.1
A
ASP
11
A
O
ASP
12
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
325
E
O
HOH
1_555
82.4
A
ASP
177
A
OD1
ASP
178
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
325
E
O
HOH
1_555
84.0
A
HOH
313
E
O
HOH
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
325
E
O
HOH
1_555
103.5
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
95.8
A
ASP
11
A
O
ASP
12
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
92.7
A
ASP
177
A
OD1
ASP
178
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
171.9
A
HOH
313
E
O
HOH
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
83.1
A
HOH
325
E
O
HOH
1_555
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
89.8
A
GLU
63
A
OE2
GLU
64
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
460
E
O
HOH
1_555
82.9
A
GLU
63
A
OE2
GLU
64
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
531
E
O
HOH
1_555
71.0
A
HOH
460
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
531
E
O
HOH
1_555
88.0
A
GLU
63
A
OE2
GLU
64
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
532
E
O
HOH
1_555
170.1
A
HOH
460
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
532
E
O
HOH
1_555
95.7
A
HOH
531
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
532
E
O
HOH
1_555
99.1
A
GLU
63
A
OE2
GLU
64
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
533
E
O
HOH
1_555
93.4
A
HOH
460
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
533
E
O
HOH
1_555
90.0
A
HOH
531
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
533
E
O
HOH
1_555
164.4
A
HOH
532
E
O
HOH
1_555
A
MG
301
C
MG
MG
1_555
A
HOH
533
E
O
HOH
1_555
96.5
A
MSE
20
SELENOMETHIONINE
A
MSE
21
MET
A
MSE
48
SELENOMETHIONINE
A
MSE
49
MET
A
MSE
162
SELENOMETHIONINE
A
MSE
163
MET
A
MSE
202
SELENOMETHIONINE
A
MSE
203
MET
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
A
O
ALA
140
A
O
ALA
141
A
N
LEU
114
A
N
LEU
115
A
O
LEU
111
A
O
LEU
112
A
N
THR
4
A
N
THR
5
A
N
LEU
7
A
N
LEU
8
A
O
VAL
173
A
O
VAL
174
A
N
ILE
172
A
N
ILE
173
A
O
ARG
191
A
O
ARG
192
A
N
ALA
194
A
N
ALA
195
A
O
PHE
214
A
O
PHE
215
A
N
LYS
16
A
N
LYS
17
A
O
THR
92
A
O
THR
93
1
A
CD
ARG
22
A
CD
ARG
23
1
Y
1
A
NE
ARG
22
A
NE
ARG
23
1
Y
1
A
CZ
ARG
22
A
CZ
ARG
23
1
Y
1
A
NH1
ARG
22
A
NH1
ARG
23
1
Y
1
A
NH2
ARG
22
A
NH2
ARG
23
1
Y
1
A
CE
LYS
47
A
CE
LYS
48
1
Y
1
A
NZ
LYS
47
A
NZ
LYS
48
1
Y
1
A
CG
GLU
76
A
CG
GLU
77
1
Y
1
A
CD
GLU
76
A
CD
GLU
77
1
Y
1
A
OE1
GLU
76
A
OE1
GLU
77
1
Y
1
A
OE2
GLU
76
A
OE2
GLU
77
1
Y
1
A
NE
ARG
83
A
NE
ARG
84
1
Y
1
A
CZ
ARG
83
A
CZ
ARG
84
1
Y
1
A
NH1
ARG
83
A
NH1
ARG
84
1
Y
1
A
NH2
ARG
83
A
NH2
ARG
84
1
Y
1
A
GLY
0
A
GLY
1
1
Y
1
A
MSE
1
A
MSE
2
1
Y
1
A
GLY
40
A
GLY
41
1
Y
1
A
SER
41
A
SER
42
1
Y
1
A
HIS
42
A
HIS
43
1
Y
1
A
PRO
230
A
PRO
231
1
Y
1
A
LYS
231
A
LYS
232
1
Y
1
A
HIS
232
A
HIS
233
1
Y
1
A
SER
233
A
SER
234
1
Y
1
A
A
SER
THR
38
39
-60.53
1
A
ILE
10
-94.66
-71.92
1
A
THR
13
-124.27
-57.41
1
A
ALA
196
-90.99
46.22
19.764
2.230
0.000
0.000
-0.520
0.000
-1.700
0.955
0.918
1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. MG MODELED IN THE ACTIVE SITE BASED ON CRYSTALLIZATION CONDITIONS AND RELATED STRUCTURES. 4. MG MODELED NEAR GLU 63 BASED ON GEOMETRY AND CRYSTLLIZATION CONDITIONS. 5. CHLORINE MODELED BASED ON CRYSTALLIZATION CONDITIONS. 6. RESIDUES 40-42 WERE DISORDERED AND NOT MODELED. 7. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY.
0.247
0.189
0.192
1.800
27.951
1084
21060
5.100
97.650
6.882
0.110
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
MAD
0.142
0.144
0.800
0.800
1.200
MAXIMUM LIKELIHOOD WITH PHASES
MASK
1.800
27.951
235
1982
3
0
1744
0.015
0.022
1783
0.001
0.020
1679
1.366
1.976
2408
0.800
3.000
3872
7.139
5.000
227
34.064
23.294
85
11.989
15.000
315
18.147
15.000
18
0.076
0.200
279
0.006
0.020
2001
0.001
0.020
377
0.211
0.200
379
0.181
0.200
1718
0.176
0.200
883
0.084
0.200
1044
0.163
0.200
154
0.046
0.200
1
0.080
0.200
4
0.244
0.200
34
0.171
0.200
17
0.955
1.500
1230
0.210
1.500
465
1.268
2.000
1789
2.231
3.000
704
3.195
4.500
617
0.358
0.297
1.847
57
1201
1258
20
82.280
25.562
1.800
27.951
2HCF
21098
0.069
1
8.100
92.200
0.477
1.80
1.86
1.6
4474
2718
1
72.70
0.33
1.86
1.94
2.3
6935
3654
1
84.30
0.266
1.94
2.03
2.7
6966
3551
1
85.80
0.201
2.03
2.13
3.8
6877
3541
1
93.40
0.132
2.13
2.27
5.3
7917
4077
1
96.80
0.106
2.27
2.44
6.5
7383
3818
1
97.70
0.093
2.44
2.69
7.3
7784
4038
1
97.20
0.066
2.69
3.07
9.3
7430
3810
1
96.60
0.044
3.07
14.4
7814
4015
1
98.10
model building
D.C. & J.S. Richardson lab
molprobity@kinemage.biochem.duke.edu
http://kinemage.biochem.duke.edu/molprobity/
MolProbity
package
3beta29
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
5.2.0005
data scaling
Wolfgang Kabsch
http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html
XSCALE
package
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data reduction
XDS
Crystal structure of hydrolase haloacid dehalogenase-like family (np_662590.1) from Chlorobium tepidum TLS at 1.80 A resolution
1
N
N
2
N
N
2
N
N
3
N
N
4
N
N
A
SER
19
A
SER
20
HELX_P
A
GLY
34
A
GLY
35
1
1
16
A
MSE
48
A
MSE
49
HELX_P
A
ASN
59
A
ASN
60
1
2
12
A
GLU
63
A
GLU
64
HELX_P
A
ALA
86
A
ALA
87
1
3
24
A
ARG
87
A
ARG
88
HELX_P
A
GLU
89
A
GLU
90
5
4
3
A
GLY
96
A
GLY
97
HELX_P
A
SER
106
A
SER
107
1
5
11
A
PHE
119
A
PHE
120
HELX_P
A
LEU
129
A
LEU
130
1
6
11
A
ASP
147
A
ASP
148
HELX_P
A
ASN
149
A
ASN
150
5
7
3
A
GLU
150
A
GLU
151
HELX_P
A
GLY
164
A
GLY
165
1
8
15
A
SER
168
A
SER
169
HELX_P
A
SER
170
A
SER
171
5
9
3
A
THR
178
A
THR
179
HELX_P
A
GLU
187
A
GLU
188
1
10
10
A
THR
201
A
THR
202
HELX_P
A
ARG
207
A
ARG
208
1
11
7
A
GLU
219
A
GLU
220
HELX_P
A
THR
229
A
THR
230
1
12
11
covale
1.324
both
A
SER
19
A
C
SER
20
1_555
A
MSE
20
A
N
MSE
21
1_555
covale
1.330
both
A
MSE
20
A
C
MSE
21
1_555
A
ASN
21
A
N
ASN
22
1_555
covale
1.327
both
A
LYS
47
A
C
LYS
48
1_555
A
MSE
48
A
N
MSE
49
1_555
covale
1.338
both
A
MSE
48
A
C
MSE
49
1_555
A
ASP
49
A
N
ASP
50
1_555
covale
1.324
both
A
ARG
161
A
C
ARG
162
1_555
A
MSE
162
A
N
MSE
163
1_555
covale
1.331
both
A
MSE
162
A
C
MSE
163
1_555
A
THR
163
A
N
THR
164
1_555
covale
1.338
both
A
THR
201
A
C
THR
202
1_555
A
MSE
202
A
N
MSE
203
1_555
covale
1.329
both
A
MSE
202
A
C
MSE
203
1_555
A
GLU
203
A
N
GLU
204
1_555
metalc
2.038
A
ASP
9
A
OD2
ASP
10
1_555
A
MG
300
B
MG
MG
1_555
metalc
2.138
A
ASP
11
A
O
ASP
12
1_555
A
MG
300
B
MG
MG
1_555
metalc
2.045
A
GLU
63
A
OE2
GLU
64
1_555
A
MG
301
C
MG
MG
1_555
metalc
2.099
A
ASP
177
A
OD1
ASP
178
1_555
A
MG
300
B
MG
MG
1_555
metalc
2.070
A
MG
300
B
MG
MG
1_555
A
HOH
313
E
O
HOH
1_555
metalc
2.245
A
MG
300
B
MG
MG
1_555
A
HOH
325
E
O
HOH
1_555
metalc
2.124
A
MG
300
B
MG
MG
1_555
A
HOH
326
E
O
HOH
1_555
metalc
2.282
A
MG
301
C
MG
MG
1_555
A
HOH
460
E
O
HOH
1_555
metalc
2.227
A
MG
301
C
MG
MG
1_555
A
HOH
531
E
O
HOH
1_555
metalc
1.945
A
MG
301
C
MG
MG
1_555
A
HOH
532
E
O
HOH
1_555
metalc
2.211
A
MG
301
C
MG
MG
1_555
A
HOH
533
E
O
HOH
1_555
HYDROLASE
np_662590.1, hydrolase haloacid dehalogenase-like family, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, HYDROLASE
Q8KBS5_CHLTE
UNP
1
1
Q8KBS5
1
233
2HCF
1
233
Q8KBS5
A
1
2
234
1
expression tag
GLY
0
2HCF
A
Q8KBS5
UNP
1
1
MET
modified residue
MSE
1
2HCF
A
Q8KBS5
UNP
1
2
1
MET
modified residue
MSE
20
2HCF
A
Q8KBS5
UNP
20
21
1
MET
modified residue
MSE
48
2HCF
A
Q8KBS5
UNP
48
49
1
MET
modified residue
MSE
162
2HCF
A
Q8KBS5
UNP
162
163
1
MET
modified residue
MSE
202
2HCF
A
Q8KBS5
UNP
202
203
6
2
parallel
parallel
parallel
parallel
parallel
anti-parallel
A
GLY
139
A
GLY
140
A
ALA
140
A
ALA
141
A
VAL
110
A
VAL
111
A
LEU
115
A
LEU
116
A
THR
4
A
THR
5
A
PHE
8
A
PHE
9
A
ILE
172
A
ILE
173
A
GLY
176
A
GLY
177
A
ARG
191
A
ARG
192
A
VAL
195
A
VAL
196
A
THR
212
A
THR
213
A
PHE
214
A
PHE
215
A
LEU
15
A
LEU
16
A
VAL
17
A
VAL
18
A
ILE
91
A
ILE
92
A
LEU
93
A
LEU
94
BINDING SITE FOR RESIDUE MG A 300
A
MG
300
Software
6
BINDING SITE FOR RESIDUE MG A 301
A
MG
301
Software
5
BINDING SITE FOR RESIDUE CL A 302
A
CL
302
Software
3
A
ASP
9
A
ASP
10
6
1_555
A
ASP
11
A
ASP
12
6
1_555
A
ASP
177
A
ASP
178
6
1_555
A
HOH
313
E
HOH
6
1_555
A
HOH
325
E
HOH
6
1_555
A
HOH
326
E
HOH
6
1_555
A
GLU
63
A
GLU
64
5
1_555
A
HOH
460
E
HOH
5
1_555
A
HOH
531
E
HOH
5
1_555
A
HOH
532
E
HOH
5
1_555
A
HOH
533
E
HOH
5
1_555
A
GLY
131
A
GLY
132
3
1_555
A
ASP
133
A
ASP
134
3
1_555
A
HIS
134
A
HIS
135
3
1_555
19
P 21 21 21