0.02649 0.00000 0.00000 0.00000 0.01397 0.00000 0.00000 0.00000 0.01202 0.00000 0.00000 0.00000 Joint Center for Structural Genomics (JCSG) http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 4 90.000 90.000 90.000 37.750 71.590 83.200 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking Cl -1 35.453 CHLORIDE ION non-polymer C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking Mg 2 24.305 MAGNESIUM ION non-polymer C5 H11 N O2 Se 196.106 n SELENOMETHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking To be published 0353 Crystal structure of hydrolase haloacid dehalogenase-like family (np_662590.1) from Chlorobium tepidum TLS at 1.80 A resolution 10.2210/pdb2hcf/pdb pdb_00002hcf 1.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 1.00000 0.00000 0.00000 0.00000 100 1 Flat collimating mirror, toroid focusing mirror CCD 2006-06-05 MARMOSAIC 325 mm CCD Double crystal monochromator MAD M x-ray 1 0.91837 1.0 0.97915 1.0 0.97929 1.0 BL9-2 SSRL 0.91837, 0.97915, 0.97929 SYNCHROTRON SSRL BEAMLINE BL9-2 26194.895 Hydrolase, haloacid dehalogenase-like family 1 man polymer 24.305 MAGNESIUM ION 2 syn non-polymer 35.453 CHLORIDE ION 1 syn non-polymer 18.015 water 235 nat water no yes G(MSE)SRTLVLFDIDGTLLKVES(MSE)NRRVLADALIEVYGTEGSTGSHDFSGK(MSE)DGAIIYEVLSNVGLERAEI ADKFDKAKETYIALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPFGAFADDALD RNELPHIALERARR(MSE)TGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFT(MSE)EELARHKPGTLFKNFAE TDEVLASILTPKHS GMSRTLVLFDIDGTLLKVESMNRRVLADALIEVYGTEGSTGSHDFSGKMDGAIIYEVLSNVGLERAEIADKFDKAKETYI ALFRERARREDITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERA RRMTGANYSPSQIVIIGDTEHDIRCARELDARSIAVATGNFTMEELARHKPGTLFKNFAETDEVLASILTPKHS A 366871 polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Chlorobaculum Escherichia sample np_662590.1 1097 Chlorobaculum tepidum 562 Escherichia coli Plasmid 1 2.01 38.41 VAPOR DIFFUSION, SITTING DROP, NANODROP 8.5 0.2M MgCl2, 30.0% PEG-4000, 0.1M TRIS, pH 8.5, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K 277 Joint Center for Structural Genomics JCSG PSI, Protein Structure Initiative software database_2 pdbx_struct_conn_angle struct_conn struct_ref_seq_dif struct_site repository Initial release Version format compliance Advisory Version format compliance Refinement description Database references Derived calculations 1 0 2006-08-15 1 1 2008-05-01 1 2 2011-07-13 1 3 2017-10-18 1 4 2023-01-25 _software.classification _software.name _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.value _struct_conn.pdbx_dist_value _struct_conn.pdbx_leaving_atom_flag _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id SEQUENCE THE CONSTRUCT WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. Y RCSB Y RCSB 2006-06-16 REL REL MG MAGNESIUM ION CL CHLORIDE ION HOH water MG 300 2 MG MG 300 A MG 1 2 MG MG 301 A CL 2 3 CL CL 302 A HOH 3 4 HOH HOH 303 A HOH 4 4 HOH HOH 304 A HOH 5 4 HOH HOH 305 A HOH 6 4 HOH HOH 306 A HOH 7 4 HOH HOH 307 A HOH 8 4 HOH HOH 308 A HOH 9 4 HOH HOH 309 A HOH 10 4 HOH HOH 310 A HOH 11 4 HOH HOH 311 A HOH 12 4 HOH HOH 312 A HOH 13 4 HOH HOH 313 A HOH 14 4 HOH HOH 314 A HOH 15 4 HOH HOH 315 A HOH 16 4 HOH HOH 316 A HOH 17 4 HOH HOH 317 A HOH 18 4 HOH HOH 318 A HOH 19 4 HOH HOH 319 A HOH 20 4 HOH HOH 320 A HOH 21 4 HOH HOH 321 A HOH 22 4 HOH HOH 322 A HOH 23 4 HOH HOH 323 A HOH 24 4 HOH HOH 324 A HOH 25 4 HOH HOH 325 A HOH 26 4 HOH HOH 326 A HOH 27 4 HOH HOH 327 A HOH 28 4 HOH HOH 328 A HOH 29 4 HOH HOH 329 A HOH 30 4 HOH HOH 330 A HOH 31 4 HOH HOH 331 A HOH 32 4 HOH HOH 332 A HOH 33 4 HOH HOH 333 A HOH 34 4 HOH HOH 334 A HOH 35 4 HOH HOH 335 A HOH 36 4 HOH HOH 336 A HOH 37 4 HOH HOH 337 A HOH 38 4 HOH HOH 338 A HOH 39 4 HOH HOH 339 A HOH 40 4 HOH HOH 340 A HOH 41 4 HOH HOH 341 A HOH 42 4 HOH HOH 342 A HOH 43 4 HOH HOH 343 A HOH 44 4 HOH HOH 344 A HOH 45 4 HOH HOH 345 A HOH 46 4 HOH HOH 346 A HOH 47 4 HOH HOH 347 A HOH 48 4 HOH HOH 348 A HOH 49 4 HOH HOH 349 A HOH 50 4 HOH HOH 350 A HOH 51 4 HOH HOH 351 A HOH 52 4 HOH HOH 352 A HOH 53 4 HOH HOH 353 A HOH 54 4 HOH HOH 354 A HOH 55 4 HOH HOH 355 A HOH 56 4 HOH HOH 356 A HOH 57 4 HOH HOH 357 A HOH 58 4 HOH HOH 358 A HOH 59 4 HOH HOH 359 A HOH 60 4 HOH HOH 360 A HOH 61 4 HOH HOH 361 A HOH 62 4 HOH HOH 362 A HOH 63 4 HOH HOH 363 A HOH 64 4 HOH HOH 364 A HOH 65 4 HOH HOH 365 A HOH 66 4 HOH HOH 366 A HOH 67 4 HOH HOH 367 A HOH 68 4 HOH HOH 368 A HOH 69 4 HOH HOH 369 A HOH 70 4 HOH HOH 370 A HOH 71 4 HOH HOH 371 A HOH 72 4 HOH HOH 372 A HOH 73 4 HOH HOH 373 A HOH 74 4 HOH HOH 374 A HOH 75 4 HOH HOH 375 A HOH 76 4 HOH HOH 376 A HOH 77 4 HOH HOH 377 A HOH 78 4 HOH HOH 378 A HOH 79 4 HOH HOH 379 A HOH 80 4 HOH HOH 380 A HOH 81 4 HOH HOH 381 A HOH 82 4 HOH HOH 382 A HOH 83 4 HOH HOH 383 A HOH 84 4 HOH HOH 384 A HOH 85 4 HOH HOH 385 A HOH 86 4 HOH HOH 386 A HOH 87 4 HOH HOH 387 A HOH 88 4 HOH HOH 388 A HOH 89 4 HOH HOH 389 A HOH 90 4 HOH HOH 390 A HOH 91 4 HOH HOH 391 A HOH 92 4 HOH HOH 392 A HOH 93 4 HOH HOH 393 A HOH 94 4 HOH HOH 394 A HOH 95 4 HOH HOH 395 A HOH 96 4 HOH HOH 396 A HOH 97 4 HOH HOH 397 A HOH 98 4 HOH HOH 398 A HOH 99 4 HOH HOH 399 A HOH 100 4 HOH HOH 400 A HOH 101 4 HOH HOH 401 A HOH 102 4 HOH HOH 402 A HOH 103 4 HOH HOH 403 A HOH 104 4 HOH HOH 404 A HOH 105 4 HOH HOH 405 A HOH 106 4 HOH HOH 406 A HOH 107 4 HOH HOH 407 A HOH 108 4 HOH HOH 408 A HOH 109 4 HOH HOH 409 A HOH 110 4 HOH HOH 410 A HOH 111 4 HOH HOH 411 A HOH 112 4 HOH HOH 412 A HOH 113 4 HOH HOH 413 A HOH 114 4 HOH HOH 414 A HOH 115 4 HOH HOH 415 A HOH 116 4 HOH HOH 416 A HOH 117 4 HOH HOH 417 A HOH 118 4 HOH HOH 418 A HOH 119 4 HOH HOH 419 A HOH 120 4 HOH HOH 420 A HOH 121 4 HOH HOH 421 A HOH 122 4 HOH HOH 422 A HOH 123 4 HOH HOH 423 A HOH 124 4 HOH HOH 424 A HOH 125 4 HOH HOH 425 A HOH 126 4 HOH HOH 426 A HOH 127 4 HOH HOH 427 A HOH 128 4 HOH HOH 428 A HOH 129 4 HOH HOH 429 A HOH 130 4 HOH HOH 430 A HOH 131 4 HOH HOH 431 A HOH 132 4 HOH HOH 432 A HOH 133 4 HOH HOH 433 A HOH 134 4 HOH HOH 434 A HOH 135 4 HOH HOH 435 A HOH 136 4 HOH HOH 436 A HOH 137 4 HOH HOH 437 A HOH 138 4 HOH HOH 438 A HOH 139 4 HOH HOH 439 A HOH 140 4 HOH HOH 440 A HOH 141 4 HOH HOH 441 A HOH 142 4 HOH HOH 442 A HOH 143 4 HOH HOH 443 A HOH 144 4 HOH HOH 444 A HOH 145 4 HOH HOH 445 A HOH 146 4 HOH HOH 446 A HOH 147 4 HOH HOH 447 A HOH 148 4 HOH HOH 448 A HOH 149 4 HOH HOH 449 A HOH 150 4 HOH HOH 450 A HOH 151 4 HOH HOH 451 A HOH 152 4 HOH HOH 452 A HOH 153 4 HOH HOH 453 A HOH 154 4 HOH HOH 454 A HOH 155 4 HOH HOH 455 A HOH 156 4 HOH HOH 456 A HOH 157 4 HOH HOH 457 A HOH 158 4 HOH HOH 458 A HOH 159 4 HOH HOH 459 A HOH 160 4 HOH HOH 460 A HOH 161 4 HOH HOH 461 A HOH 162 4 HOH HOH 462 A HOH 163 4 HOH HOH 463 A HOH 164 4 HOH HOH 464 A HOH 165 4 HOH HOH 465 A HOH 166 4 HOH HOH 466 A HOH 167 4 HOH HOH 467 A HOH 168 4 HOH HOH 468 A HOH 169 4 HOH HOH 469 A HOH 170 4 HOH HOH 470 A HOH 171 4 HOH HOH 471 A HOH 172 4 HOH HOH 472 A HOH 173 4 HOH HOH 473 A HOH 174 4 HOH HOH 474 A HOH 175 4 HOH HOH 475 A HOH 176 4 HOH HOH 476 A HOH 177 4 HOH HOH 477 A HOH 178 4 HOH HOH 478 A HOH 179 4 HOH HOH 479 A HOH 180 4 HOH HOH 480 A HOH 181 4 HOH HOH 481 A HOH 182 4 HOH HOH 482 A HOH 183 4 HOH HOH 483 A HOH 184 4 HOH HOH 484 A HOH 185 4 HOH HOH 485 A HOH 186 4 HOH HOH 486 A HOH 187 4 HOH HOH 487 A HOH 188 4 HOH HOH 488 A HOH 189 4 HOH HOH 489 A HOH 190 4 HOH HOH 490 A HOH 191 4 HOH HOH 491 A HOH 192 4 HOH HOH 492 A HOH 193 4 HOH HOH 493 A HOH 194 4 HOH HOH 494 A HOH 195 4 HOH HOH 495 A HOH 196 4 HOH HOH 496 A HOH 197 4 HOH HOH 497 A HOH 198 4 HOH HOH 498 A HOH 199 4 HOH HOH 499 A HOH 200 4 HOH HOH 500 A HOH 201 4 HOH HOH 501 A HOH 202 4 HOH HOH 502 A HOH 203 4 HOH HOH 503 A HOH 204 4 HOH HOH 504 A HOH 205 4 HOH HOH 505 A HOH 206 4 HOH HOH 506 A HOH 207 4 HOH HOH 507 A HOH 208 4 HOH HOH 508 A HOH 209 4 HOH HOH 509 A HOH 210 4 HOH HOH 510 A HOH 211 4 HOH HOH 511 A HOH 212 4 HOH HOH 512 A HOH 213 4 HOH HOH 513 A HOH 214 4 HOH HOH 514 A HOH 215 4 HOH HOH 515 A HOH 216 4 HOH HOH 516 A HOH 217 4 HOH HOH 517 A HOH 218 4 HOH HOH 518 A HOH 219 4 HOH HOH 519 A HOH 220 4 HOH HOH 520 A HOH 221 4 HOH HOH 521 A HOH 222 4 HOH HOH 522 A HOH 223 4 HOH HOH 523 A HOH 224 4 HOH HOH 524 A HOH 225 4 HOH HOH 525 A HOH 226 4 HOH HOH 526 A HOH 227 4 HOH HOH 527 A HOH 228 4 HOH HOH 528 A HOH 229 4 HOH HOH 529 A HOH 230 4 HOH HOH 530 A HOH 231 4 HOH HOH 531 A HOH 232 4 HOH HOH 532 A HOH 233 4 HOH HOH 533 A HOH 234 4 HOH HOH 534 A HOH 235 4 HOH HOH 535 A HOH 236 4 HOH HOH 536 A HOH 237 4 HOH HOH 537 A n 1 0 A n 2 1 A SER 2 n 3 SER 2 A ARG 3 n 4 ARG 3 A THR 4 n 5 THR 4 A LEU 5 n 6 LEU 5 A VAL 6 n 7 VAL 6 A LEU 7 n 8 LEU 7 A PHE 8 n 9 PHE 8 A ASP 9 n 10 ASP 9 A ILE 10 n 11 ILE 10 A ASP 11 n 12 ASP 11 A GLY 12 n 13 GLY 12 A THR 13 n 14 THR 13 A LEU 14 n 15 LEU 14 A LEU 15 n 16 LEU 15 A LYS 16 n 17 LYS 16 A VAL 17 n 18 VAL 17 A GLU 18 n 19 GLU 18 A SER 19 n 20 SER 19 A MSE 20 n 21 MSE 20 A ASN 21 n 22 ASN 21 A ARG 22 n 23 ARG 22 A ARG 23 n 24 ARG 23 A VAL 24 n 25 VAL 24 A LEU 25 n 26 LEU 25 A ALA 26 n 27 ALA 26 A ASP 27 n 28 ASP 27 A ALA 28 n 29 ALA 28 A LEU 29 n 30 LEU 29 A ILE 30 n 31 ILE 30 A GLU 31 n 32 GLU 31 A VAL 32 n 33 VAL 32 A TYR 33 n 34 TYR 33 A GLY 34 n 35 GLY 34 A THR 35 n 36 THR 35 A GLU 36 n 37 GLU 36 A GLY 37 n 38 GLY 37 A SER 38 n 39 SER 38 A THR 39 n 40 THR 39 A n 41 40 A n 42 41 A n 43 42 A ASP 43 n 44 ASP 43 A PHE 44 n 45 PHE 44 A SER 45 n 46 SER 45 A GLY 46 n 47 GLY 46 A LYS 47 n 48 LYS 47 A MSE 48 n 49 MSE 48 A ASP 49 n 50 ASP 49 A GLY 50 n 51 GLY 50 A ALA 51 n 52 ALA 51 A ILE 52 n 53 ILE 52 A ILE 53 n 54 ILE 53 A TYR 54 n 55 TYR 54 A GLU 55 n 56 GLU 55 A VAL 56 n 57 VAL 56 A LEU 57 n 58 LEU 57 A SER 58 n 59 SER 58 A ASN 59 n 60 ASN 59 A VAL 60 n 61 VAL 60 A GLY 61 n 62 GLY 61 A LEU 62 n 63 LEU 62 A GLU 63 n 64 GLU 63 A ARG 64 n 65 ARG 64 A ALA 65 n 66 ALA 65 A GLU 66 n 67 GLU 66 A ILE 67 n 68 ILE 67 A ALA 68 n 69 ALA 68 A ASP 69 n 70 ASP 69 A LYS 70 n 71 LYS 70 A PHE 71 n 72 PHE 71 A ASP 72 n 73 ASP 72 A LYS 73 n 74 LYS 73 A ALA 74 n 75 ALA 74 A LYS 75 n 76 LYS 75 A GLU 76 n 77 GLU 76 A THR 77 n 78 THR 77 A TYR 78 n 79 TYR 78 A ILE 79 n 80 ILE 79 A ALA 80 n 81 ALA 80 A LEU 81 n 82 LEU 81 A PHE 82 n 83 PHE 82 A ARG 83 n 84 ARG 83 A GLU 84 n 85 GLU 84 A ARG 85 n 86 ARG 85 A ALA 86 n 87 ALA 86 A ARG 87 n 88 ARG 87 A ARG 88 n 89 ARG 88 A GLU 89 n 90 GLU 89 A ASP 90 n 91 ASP 90 A ILE 91 n 92 ILE 91 A THR 92 n 93 THR 92 A LEU 93 n 94 LEU 93 A LEU 94 n 95 LEU 94 A GLU 95 n 96 GLU 95 A GLY 96 n 97 GLY 96 A VAL 97 n 98 VAL 97 A ARG 98 n 99 ARG 98 A GLU 99 n 100 GLU 99 A LEU 100 n 101 LEU 100 A LEU 101 n 102 LEU 101 A ASP 102 n 103 ASP 102 A ALA 103 n 104 ALA 103 A LEU 104 n 105 LEU 104 A SER 105 n 106 SER 105 A SER 106 n 107 SER 106 A ARG 107 n 108 ARG 107 A SER 108 n 109 SER 108 A ASP 109 n 110 ASP 109 A VAL 110 n 111 VAL 110 A LEU 111 n 112 LEU 111 A LEU 112 n 113 LEU 112 A GLY 113 n 114 GLY 113 A LEU 114 n 115 LEU 114 A LEU 115 n 116 LEU 115 A THR 116 n 117 THR 116 A GLY 117 n 118 GLY 117 A ASN 118 n 119 ASN 118 A PHE 119 n 120 PHE 119 A GLU 120 n 121 GLU 120 A ALA 121 n 122 ALA 121 A SER 122 n 123 SER 122 A GLY 123 n 124 GLY 123 A ARG 124 n 125 ARG 124 A HIS 125 n 126 HIS 125 A LYS 126 n 127 LYS 126 A LEU 127 n 128 LEU 127 A LYS 128 n 129 LYS 128 A LEU 129 n 130 LEU 129 A PRO 130 n 131 PRO 130 A GLY 131 n 132 GLY 131 A ILE 132 n 133 ILE 132 A ASP 133 n 134 ASP 133 A HIS 134 n 135 HIS 134 A TYR 135 n 136 TYR 135 A PHE 136 n 137 PHE 136 A PRO 137 n 138 PRO 137 A PHE 138 n 139 PHE 138 A GLY 139 n 140 GLY 139 A ALA 140 n 141 ALA 140 A PHE 141 n 142 PHE 141 A ALA 142 n 143 ALA 142 A ASP 143 n 144 ASP 143 A ASP 144 n 145 ASP 144 A ALA 145 n 146 ALA 145 A LEU 146 n 147 LEU 146 A ASP 147 n 148 ASP 147 A ARG 148 n 149 ARG 148 A ASN 149 n 150 ASN 149 A GLU 150 n 151 GLU 150 A LEU 151 n 152 LEU 151 A PRO 152 n 153 PRO 152 A HIS 153 n 154 HIS 153 A ILE 154 n 155 ILE 154 A ALA 155 n 156 ALA 155 A LEU 156 n 157 LEU 156 A GLU 157 n 158 GLU 157 A ARG 158 n 159 ARG 158 A ALA 159 n 160 ALA 159 A ARG 160 n 161 ARG 160 A ARG 161 n 162 ARG 161 A MSE 162 n 163 MSE 162 A THR 163 n 164 THR 163 A GLY 164 n 165 GLY 164 A ALA 165 n 166 ALA 165 A ASN 166 n 167 ASN 166 A TYR 167 n 168 TYR 167 A SER 168 n 169 SER 168 A PRO 169 n 170 PRO 169 A SER 170 n 171 SER 170 A GLN 171 n 172 GLN 171 A ILE 172 n 173 ILE 172 A VAL 173 n 174 VAL 173 A ILE 174 n 175 ILE 174 A ILE 175 n 176 ILE 175 A GLY 176 n 177 GLY 176 A ASP 177 n 178 ASP 177 A THR 178 n 179 THR 178 A GLU 179 n 180 GLU 179 A HIS 180 n 181 HIS 180 A ASP 181 n 182 ASP 181 A ILE 182 n 183 ILE 182 A ARG 183 n 184 ARG 183 A CYS 184 n 185 CYS 184 A ALA 185 n 186 ALA 185 A ARG 186 n 187 ARG 186 A GLU 187 n 188 GLU 187 A LEU 188 n 189 LEU 188 A ASP 189 n 190 ASP 189 A ALA 190 n 191 ALA 190 A ARG 191 n 192 ARG 191 A SER 192 n 193 SER 192 A ILE 193 n 194 ILE 193 A ALA 194 n 195 ALA 194 A VAL 195 n 196 VAL 195 A ALA 196 n 197 ALA 196 A THR 197 n 198 THR 197 A GLY 198 n 199 GLY 198 A ASN 199 n 200 ASN 199 A PHE 200 n 201 PHE 200 A THR 201 n 202 THR 201 A MSE 202 n 203 MSE 202 A GLU 203 n 204 GLU 203 A GLU 204 n 205 GLU 204 A LEU 205 n 206 LEU 205 A ALA 206 n 207 ALA 206 A ARG 207 n 208 ARG 207 A HIS 208 n 209 HIS 208 A LYS 209 n 210 LYS 209 A PRO 210 n 211 PRO 210 A GLY 211 n 212 GLY 211 A THR 212 n 213 THR 212 A LEU 213 n 214 LEU 213 A PHE 214 n 215 PHE 214 A LYS 215 n 216 LYS 215 A ASN 216 n 217 ASN 216 A PHE 217 n 218 PHE 217 A ALA 218 n 219 ALA 218 A GLU 219 n 220 GLU 219 A THR 220 n 221 THR 220 A ASP 221 n 222 ASP 221 A GLU 222 n 223 GLU 222 A VAL 223 n 224 VAL 223 A LEU 224 n 225 LEU 224 A ALA 225 n 226 ALA 225 A SER 226 n 227 SER 226 A ILE 227 n 228 ILE 227 A LEU 228 n 229 LEU 228 A THR 229 n 230 THR 229 A n 231 230 A n 232 231 A n 233 232 A n 234 233 A 0.4396 0.0601 -0.0210 0.8482 0.1049 1.1383 0.0059 -0.0257 0.0104 -0.0382 -0.0041 -0.0069 -0.0322 -0.0215 -0.0018 -0.0707 0.0126 0.0070 -0.0257 -0.0012 -0.0338 refined 22.2390 44.9764 15.7082 X-RAY DIFFRACTION A 2 A 3 A 39 A 40 X-RAY DIFFRACTION 1 ALL A 43 A 44 A 229 A 230 X-RAY DIFFRACTION 1 ALL author_defined_assembly 1 monomeric A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 A ASP 11 A O ASP 12 1_555 85.7 A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 A ASP 177 A OD1 ASP 178 1_555 91.3 A ASP 11 A O ASP 12 1_555 A MG 300 B MG MG 1_555 A ASP 177 A OD1 ASP 178 1_555 91.7 A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 A HOH 313 E O HOH 1_555 88.7 A ASP 11 A O ASP 12 1_555 A MG 300 B MG MG 1_555 A HOH 313 E O HOH 1_555 172.7 A ASP 177 A OD1 ASP 178 1_555 A MG 300 B MG MG 1_555 A HOH 313 E O HOH 1_555 93.2 A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 A HOH 325 E O HOH 1_555 167.1 A ASP 11 A O ASP 12 1_555 A MG 300 B MG MG 1_555 A HOH 325 E O HOH 1_555 82.4 A ASP 177 A OD1 ASP 178 1_555 A MG 300 B MG MG 1_555 A HOH 325 E O HOH 1_555 84.0 A HOH 313 E O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 325 E O HOH 1_555 103.5 A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 95.8 A ASP 11 A O ASP 12 1_555 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 92.7 A ASP 177 A OD1 ASP 178 1_555 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 171.9 A HOH 313 E O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 83.1 A HOH 325 E O HOH 1_555 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 89.8 A GLU 63 A OE2 GLU 64 1_555 A MG 301 C MG MG 1_555 A HOH 460 E O HOH 1_555 82.9 A GLU 63 A OE2 GLU 64 1_555 A MG 301 C MG MG 1_555 A HOH 531 E O HOH 1_555 71.0 A HOH 460 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 531 E O HOH 1_555 88.0 A GLU 63 A OE2 GLU 64 1_555 A MG 301 C MG MG 1_555 A HOH 532 E O HOH 1_555 170.1 A HOH 460 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 532 E O HOH 1_555 95.7 A HOH 531 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 532 E O HOH 1_555 99.1 A GLU 63 A OE2 GLU 64 1_555 A MG 301 C MG MG 1_555 A HOH 533 E O HOH 1_555 93.4 A HOH 460 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 533 E O HOH 1_555 90.0 A HOH 531 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 533 E O HOH 1_555 164.4 A HOH 532 E O HOH 1_555 A MG 301 C MG MG 1_555 A HOH 533 E O HOH 1_555 96.5 A MSE 20 SELENOMETHIONINE A MSE 21 MET A MSE 48 SELENOMETHIONINE A MSE 49 MET A MSE 162 SELENOMETHIONINE A MSE 163 MET A MSE 202 SELENOMETHIONINE A MSE 203 MET 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 A O ALA 140 A O ALA 141 A N LEU 114 A N LEU 115 A O LEU 111 A O LEU 112 A N THR 4 A N THR 5 A N LEU 7 A N LEU 8 A O VAL 173 A O VAL 174 A N ILE 172 A N ILE 173 A O ARG 191 A O ARG 192 A N ALA 194 A N ALA 195 A O PHE 214 A O PHE 215 A N LYS 16 A N LYS 17 A O THR 92 A O THR 93 1 A CD ARG 22 A CD ARG 23 1 Y 1 A NE ARG 22 A NE ARG 23 1 Y 1 A CZ ARG 22 A CZ ARG 23 1 Y 1 A NH1 ARG 22 A NH1 ARG 23 1 Y 1 A NH2 ARG 22 A NH2 ARG 23 1 Y 1 A CE LYS 47 A CE LYS 48 1 Y 1 A NZ LYS 47 A NZ LYS 48 1 Y 1 A CG GLU 76 A CG GLU 77 1 Y 1 A CD GLU 76 A CD GLU 77 1 Y 1 A OE1 GLU 76 A OE1 GLU 77 1 Y 1 A OE2 GLU 76 A OE2 GLU 77 1 Y 1 A NE ARG 83 A NE ARG 84 1 Y 1 A CZ ARG 83 A CZ ARG 84 1 Y 1 A NH1 ARG 83 A NH1 ARG 84 1 Y 1 A NH2 ARG 83 A NH2 ARG 84 1 Y 1 A GLY 0 A GLY 1 1 Y 1 A MSE 1 A MSE 2 1 Y 1 A GLY 40 A GLY 41 1 Y 1 A SER 41 A SER 42 1 Y 1 A HIS 42 A HIS 43 1 Y 1 A PRO 230 A PRO 231 1 Y 1 A LYS 231 A LYS 232 1 Y 1 A HIS 232 A HIS 233 1 Y 1 A SER 233 A SER 234 1 Y 1 A A SER THR 38 39 -60.53 1 A ILE 10 -94.66 -71.92 1 A THR 13 -124.27 -57.41 1 A ALA 196 -90.99 46.22 19.764 2.230 0.000 0.000 -0.520 0.000 -1.700 0.955 0.918 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. MG MODELED IN THE ACTIVE SITE BASED ON CRYSTALLIZATION CONDITIONS AND RELATED STRUCTURES. 4. MG MODELED NEAR GLU 63 BASED ON GEOMETRY AND CRYSTLLIZATION CONDITIONS. 5. CHLORINE MODELED BASED ON CRYSTALLIZATION CONDITIONS. 6. RESIDUES 40-42 WERE DISORDERED AND NOT MODELED. 7. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. 0.247 0.189 0.192 1.800 27.951 1084 21060 5.100 97.650 6.882 0.110 RANDOM LIKELY RESIDUAL 1 THROUGHOUT 0.00 MAD 0.142 0.144 0.800 0.800 1.200 MAXIMUM LIKELIHOOD WITH PHASES MASK 1.800 27.951 235 1982 3 0 1744 0.015 0.022 1783 0.001 0.020 1679 1.366 1.976 2408 0.800 3.000 3872 7.139 5.000 227 34.064 23.294 85 11.989 15.000 315 18.147 15.000 18 0.076 0.200 279 0.006 0.020 2001 0.001 0.020 377 0.211 0.200 379 0.181 0.200 1718 0.176 0.200 883 0.084 0.200 1044 0.163 0.200 154 0.046 0.200 1 0.080 0.200 4 0.244 0.200 34 0.171 0.200 17 0.955 1.500 1230 0.210 1.500 465 1.268 2.000 1789 2.231 3.000 704 3.195 4.500 617 0.358 0.297 1.847 57 1201 1258 20 82.280 25.562 1.800 27.951 2HCF 21098 0.069 1 8.100 92.200 0.477 1.80 1.86 1.6 4474 2718 1 72.70 0.33 1.86 1.94 2.3 6935 3654 1 84.30 0.266 1.94 2.03 2.7 6966 3551 1 85.80 0.201 2.03 2.13 3.8 6877 3541 1 93.40 0.132 2.13 2.27 5.3 7917 4077 1 96.80 0.106 2.27 2.44 6.5 7383 3818 1 97.70 0.093 2.44 2.69 7.3 7784 4038 1 97.20 0.066 2.69 3.07 9.3 7430 3810 1 96.60 0.044 3.07 14.4 7814 4015 1 98.10 model building D.C. & J.S. Richardson lab molprobity@kinemage.biochem.duke.edu http://kinemage.biochem.duke.edu/molprobity/ MolProbity package 3beta29 refinement Murshudov, G.N. ccp4@dl.ac.uk Fortran_77 http://www.ccp4.ac.uk/main.html REFMAC 5.2.0005 data scaling Wolfgang Kabsch http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/xscale_program.html XSCALE package data extraction PDB sw-help@rcsb.rutgers.edu April. 3, 2006 C++ http://pdb.rutgers.edu/software/ PDB_EXTRACT package 2.000 data reduction XDS Crystal structure of hydrolase haloacid dehalogenase-like family (np_662590.1) from Chlorobium tepidum TLS at 1.80 A resolution 1 N N 2 N N 2 N N 3 N N 4 N N A SER 19 A SER 20 HELX_P A GLY 34 A GLY 35 1 1 16 A MSE 48 A MSE 49 HELX_P A ASN 59 A ASN 60 1 2 12 A GLU 63 A GLU 64 HELX_P A ALA 86 A ALA 87 1 3 24 A ARG 87 A ARG 88 HELX_P A GLU 89 A GLU 90 5 4 3 A GLY 96 A GLY 97 HELX_P A SER 106 A SER 107 1 5 11 A PHE 119 A PHE 120 HELX_P A LEU 129 A LEU 130 1 6 11 A ASP 147 A ASP 148 HELX_P A ASN 149 A ASN 150 5 7 3 A GLU 150 A GLU 151 HELX_P A GLY 164 A GLY 165 1 8 15 A SER 168 A SER 169 HELX_P A SER 170 A SER 171 5 9 3 A THR 178 A THR 179 HELX_P A GLU 187 A GLU 188 1 10 10 A THR 201 A THR 202 HELX_P A ARG 207 A ARG 208 1 11 7 A GLU 219 A GLU 220 HELX_P A THR 229 A THR 230 1 12 11 covale 1.324 both A SER 19 A C SER 20 1_555 A MSE 20 A N MSE 21 1_555 covale 1.330 both A MSE 20 A C MSE 21 1_555 A ASN 21 A N ASN 22 1_555 covale 1.327 both A LYS 47 A C LYS 48 1_555 A MSE 48 A N MSE 49 1_555 covale 1.338 both A MSE 48 A C MSE 49 1_555 A ASP 49 A N ASP 50 1_555 covale 1.324 both A ARG 161 A C ARG 162 1_555 A MSE 162 A N MSE 163 1_555 covale 1.331 both A MSE 162 A C MSE 163 1_555 A THR 163 A N THR 164 1_555 covale 1.338 both A THR 201 A C THR 202 1_555 A MSE 202 A N MSE 203 1_555 covale 1.329 both A MSE 202 A C MSE 203 1_555 A GLU 203 A N GLU 204 1_555 metalc 2.038 A ASP 9 A OD2 ASP 10 1_555 A MG 300 B MG MG 1_555 metalc 2.138 A ASP 11 A O ASP 12 1_555 A MG 300 B MG MG 1_555 metalc 2.045 A GLU 63 A OE2 GLU 64 1_555 A MG 301 C MG MG 1_555 metalc 2.099 A ASP 177 A OD1 ASP 178 1_555 A MG 300 B MG MG 1_555 metalc 2.070 A MG 300 B MG MG 1_555 A HOH 313 E O HOH 1_555 metalc 2.245 A MG 300 B MG MG 1_555 A HOH 325 E O HOH 1_555 metalc 2.124 A MG 300 B MG MG 1_555 A HOH 326 E O HOH 1_555 metalc 2.282 A MG 301 C MG MG 1_555 A HOH 460 E O HOH 1_555 metalc 2.227 A MG 301 C MG MG 1_555 A HOH 531 E O HOH 1_555 metalc 1.945 A MG 301 C MG MG 1_555 A HOH 532 E O HOH 1_555 metalc 2.211 A MG 301 C MG MG 1_555 A HOH 533 E O HOH 1_555 HYDROLASE np_662590.1, hydrolase haloacid dehalogenase-like family, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, HYDROLASE Q8KBS5_CHLTE UNP 1 1 Q8KBS5 1 233 2HCF 1 233 Q8KBS5 A 1 2 234 1 expression tag GLY 0 2HCF A Q8KBS5 UNP 1 1 MET modified residue MSE 1 2HCF A Q8KBS5 UNP 1 2 1 MET modified residue MSE 20 2HCF A Q8KBS5 UNP 20 21 1 MET modified residue MSE 48 2HCF A Q8KBS5 UNP 48 49 1 MET modified residue MSE 162 2HCF A Q8KBS5 UNP 162 163 1 MET modified residue MSE 202 2HCF A Q8KBS5 UNP 202 203 6 2 parallel parallel parallel parallel parallel anti-parallel A GLY 139 A GLY 140 A ALA 140 A ALA 141 A VAL 110 A VAL 111 A LEU 115 A LEU 116 A THR 4 A THR 5 A PHE 8 A PHE 9 A ILE 172 A ILE 173 A GLY 176 A GLY 177 A ARG 191 A ARG 192 A VAL 195 A VAL 196 A THR 212 A THR 213 A PHE 214 A PHE 215 A LEU 15 A LEU 16 A VAL 17 A VAL 18 A ILE 91 A ILE 92 A LEU 93 A LEU 94 BINDING SITE FOR RESIDUE MG A 300 A MG 300 Software 6 BINDING SITE FOR RESIDUE MG A 301 A MG 301 Software 5 BINDING SITE FOR RESIDUE CL A 302 A CL 302 Software 3 A ASP 9 A ASP 10 6 1_555 A ASP 11 A ASP 12 6 1_555 A ASP 177 A ASP 178 6 1_555 A HOH 313 E HOH 6 1_555 A HOH 325 E HOH 6 1_555 A HOH 326 E HOH 6 1_555 A GLU 63 A GLU 64 5 1_555 A HOH 460 E HOH 5 1_555 A HOH 531 E HOH 5 1_555 A HOH 532 E HOH 5 1_555 A HOH 533 E HOH 5 1_555 A GLY 131 A GLY 132 3 1_555 A ASP 133 A ASP 134 3 1_555 A HIS 134 A HIS 135 3 1_555 19 P 21 21 21