1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 McCallum, S.A. Yin, J.P. Pan, B. Fairbrother, W.J. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 1 90.00 90.00 90.00 1.000 1.000 1.000 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C11 H12 N2 O2 204.225 y TRYPTOPHAN L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking US Biochemistry BICHAW 0033 0006-2960 45 11974 11982 10.1021/bi060687l 17002296 Structure of SAP18: a ubiquitin fold in histone deacetylase complex assembly. 2006 10.2210/pdb2hde/pdb pdb_00002hde 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 1 SINGLE WAVELENGTH M 1 1.0 16920.244 Histone deacetylase complex subunit SAP18 residues 6-149 C26S 1 man polymer Sin3-associated polypeptide, 18 kDa, Sin3-associated polypeptide p18, 2HOR0202 no no GSHMRVTQEEIKKEPEKPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEAR KKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGR GSHMRVTQEEIKKEPEKPIDREKTSPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEAR KKGTHFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGR A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n human Homo Escherichia sample SAP18 9606 Homo sapiens 562 Escherichia coli BL21(DE3) RIL-codon plus Plasmid pET database_2 pdbx_nmr_software pdbx_struct_assembly pdbx_struct_oper_list struct_ref_seq_dif repository Initial release Version format compliance Version format compliance Data collection Database references Derived calculations 1 0 2007-04-24 1 1 2008-05-01 1 2 2011-07-13 1 3 2021-10-20 _database_2.pdbx_DOI _database_2.pdbx_database_accession _pdbx_nmr_software.name _struct_ref_seq_dif.details RCSB Y RCSB 2006-06-20 REL REL This structure was determined using standard 3D triple resonance techniques structures with the least restraint violations 100 20 3D_15N-separated_NOESY 3D_13C-separated_NOESY 50mM sodium phosphate, 50mM sodium chloride 5.5 ambient 298 K Cyana version 1.06 and Candid version 1.1 were also used for refinement Restrained molecular dynamics (Torsion angle and Cartesian dynamics) 1 lowest energy 1mM SAP18 U-15N, 13C, 50mm sodium chloride, 50mM sodium phosphate, pH 5.5, 20uM EDTA, 3mM sodium azide, 0.1mM DSS, 90% H2O, 10% D2O 90% H2O/10% D2O 1mM SAP18 U-15N, 50mm sodium chloride, 50mM sodium phosphate, pH 5.5, 20uM EDTA, 3mM sodium azide, 0.1mM DSS, 90%H2O, 10%D2O 90% H2O/10% D2O processing Felix 2000.1 refinement CNX 2000.1 Gabriel Cornilescu, Frank Delaglio, and Ad Bax data analysis TALOS 98.040.21.02 G.S. Rule data analysis Monte 1.0 800 Bruker DRX 600 Bruker DRX GLY 2 n 1 GLY 2 A SER 3 n 2 SER 3 A HIS 4 n 3 HIS 4 A MET 5 n 4 MET 5 A ARG 6 n 5 ARG 6 A VAL 7 n 6 VAL 7 A THR 8 n 7 THR 8 A GLN 9 n 8 GLN 9 A GLU 10 n 9 GLU 10 A GLU 11 n 10 GLU 11 A ILE 12 n 11 ILE 12 A LYS 13 n 12 LYS 13 A LYS 14 n 13 LYS 14 A GLU 15 n 14 GLU 15 A PRO 16 n 15 PRO 16 A GLU 17 n 16 GLU 17 A LYS 18 n 17 LYS 18 A PRO 19 n 18 PRO 19 A ILE 20 n 19 ILE 20 A ASP 21 n 20 ASP 21 A ARG 22 n 21 ARG 22 A GLU 23 n 22 GLU 23 A LYS 24 n 23 LYS 24 A THR 25 n 24 THR 25 A SER 26 n 25 SER 26 A PRO 27 n 26 PRO 27 A LEU 28 n 27 LEU 28 A LEU 29 n 28 LEU 29 A LEU 30 n 29 LEU 30 A ARG 31 n 30 ARG 31 A VAL 32 n 31 VAL 32 A PHE 33 n 32 PHE 33 A THR 34 n 33 THR 34 A THR 35 n 34 THR 35 A ASN 36 n 35 ASN 36 A ASN 37 n 36 ASN 37 A GLY 38 n 37 GLY 38 A ARG 39 n 38 ARG 39 A HIS 40 n 39 HIS 40 A HIS 41 n 40 HIS 41 A ARG 42 n 41 ARG 42 A MET 43 n 42 MET 43 A ASP 44 n 43 ASP 44 A GLU 45 n 44 GLU 45 A PHE 46 n 45 PHE 46 A SER 47 n 46 SER 47 A ARG 48 n 47 ARG 48 A GLY 49 n 48 GLY 49 A ASN 50 n 49 ASN 50 A VAL 51 n 50 VAL 51 A PRO 52 n 51 PRO 52 A SER 53 n 52 SER 53 A SER 54 n 53 SER 54 A GLU 55 n 54 GLU 55 A LEU 56 n 55 LEU 56 A GLN 57 n 56 GLN 57 A ILE 58 n 57 ILE 58 A TYR 59 n 58 TYR 59 A THR 60 n 59 THR 60 A TRP 61 n 60 TRP 61 A MET 62 n 61 MET 62 A ASP 63 n 62 ASP 63 A ALA 64 n 63 ALA 64 A THR 65 n 64 THR 65 A LEU 66 n 65 LEU 66 A LYS 67 n 66 LYS 67 A GLU 68 n 67 GLU 68 A LEU 69 n 68 LEU 69 A THR 70 n 69 THR 70 A SER 71 n 70 SER 71 A LEU 72 n 71 LEU 72 A VAL 73 n 72 VAL 73 A LYS 74 n 73 LYS 74 A GLU 75 n 74 GLU 75 A VAL 76 n 75 VAL 76 A TYR 77 n 76 TYR 77 A PRO 78 n 77 PRO 78 A GLU 79 n 78 GLU 79 A ALA 80 n 79 ALA 80 A ARG 81 n 80 ARG 81 A LYS 82 n 81 LYS 82 A LYS 83 n 82 LYS 83 A GLY 84 n 83 GLY 84 A THR 85 n 84 THR 85 A HIS 86 n 85 HIS 86 A PHE 87 n 86 PHE 87 A ASN 88 n 87 ASN 88 A PHE 89 n 88 PHE 89 A ALA 90 n 89 ALA 90 A ILE 91 n 90 ILE 91 A VAL 92 n 91 VAL 92 A PHE 93 n 92 PHE 93 A THR 94 n 93 THR 94 A ASP 95 n 94 ASP 95 A VAL 96 n 95 VAL 96 A LYS 97 n 96 LYS 97 A ARG 98 n 97 ARG 98 A PRO 99 n 98 PRO 99 A GLY 100 n 99 GLY 100 A TYR 101 n 100 TYR 101 A ARG 102 n 101 ARG 102 A VAL 103 n 102 VAL 103 A LYS 104 n 103 LYS 104 A GLU 105 n 104 GLU 105 A ILE 106 n 105 ILE 106 A GLY 107 n 106 GLY 107 A SER 108 n 107 SER 108 A THR 109 n 108 THR 109 A MET 110 n 109 MET 110 A SER 111 n 110 SER 111 A GLY 112 n 111 GLY 112 A ARG 113 n 112 ARG 113 A LYS 114 n 113 LYS 114 A GLY 115 n 114 GLY 115 A THR 116 n 115 THR 116 A ASP 117 n 116 ASP 117 A ASP 118 n 117 ASP 118 A SER 119 n 118 SER 119 A MET 120 n 119 MET 120 A THR 121 n 120 THR 121 A LEU 122 n 121 LEU 122 A GLN 123 n 122 GLN 123 A SER 124 n 123 SER 124 A GLN 125 n 124 GLN 125 A LYS 126 n 125 LYS 126 A PHE 127 n 126 PHE 127 A GLN 128 n 127 GLN 128 A ILE 129 n 128 ILE 129 A GLY 130 n 129 GLY 130 A ASP 131 n 130 ASP 131 A TYR 132 n 131 TYR 132 A LEU 133 n 132 LEU 133 A ASP 134 n 133 ASP 134 A ILE 135 n 134 ILE 135 A ALA 136 n 135 ALA 136 A ILE 137 n 136 ILE 137 A THR 138 n 137 THR 138 A PRO 139 n 138 PRO 139 A PRO 140 n 139 PRO 140 A ASN 141 n 140 ASN 141 A ARG 142 n 141 ARG 142 A ALA 143 n 142 ALA 143 A PRO 144 n 143 PRO 144 A PRO 145 n 144 PRO 145 A PRO 146 n 145 PRO 146 A SER 147 n 146 SER 147 A GLY 148 n 147 GLY 148 A ARG 149 n 148 ARG 149 A author_defined_assembly 1 monomeric 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 identity operation 0.0000000000 0.0000000000 0.0000000000 A O THR 60 A O THR 59 A N LEU 28 A N LEU 27 A N PHE 33 A N PHE 32 A O LEU 133 A O LEU 132 A O THR 138 A O THR 137 A N HIS 86 A N HIS 85 A N ILE 91 A N ILE 90 A O LYS 104 A O LYS 103 2 A A H O LEU MET 66 120 1.59 6 A A O H HIS ASP 41 44 1.52 7 A A O H LEU GLN 122 125 1.57 11 A A O H TRP ALA 61 64 1.59 1 A SER 3 -152.15 -46.74 1 A HIS 41 -30.78 -81.16 1 A ARG 42 -172.10 -174.95 1 A SER 54 -97.35 -76.98 1 A MET 62 -31.34 -34.94 1 A ASP 63 -90.70 30.00 1 A ASP 95 -46.41 109.57 1 A VAL 96 -144.59 -159.08 1 A THR 109 -113.71 -169.79 1 A PRO 146 -49.40 171.74 2 A PRO 19 -55.71 179.07 2 A ARG 39 -162.37 106.70 2 A SER 54 -89.34 -72.91 2 A MET 62 -32.09 -39.43 2 A ASP 63 -92.72 30.08 2 A VAL 96 -133.39 -63.90 2 A ARG 98 -56.08 107.50 2 A PRO 99 -57.07 -121.41 2 A ARG 102 -146.20 25.09 2 A THR 109 -111.19 -168.66 2 A SER 111 -69.74 95.05 2 A SER 147 -163.84 64.69 3 A SER 3 -130.70 -54.23 3 A ARG 39 -162.55 90.69 3 A HIS 41 -37.60 -31.55 3 A PHE 46 -160.11 54.03 3 A SER 47 -138.84 -69.18 3 A ASN 50 -34.07 92.82 3 A SER 54 -85.69 -82.28 3 A MET 62 -31.77 -36.46 3 A VAL 96 -66.82 -156.50 3 A PRO 99 -50.97 -112.99 3 A ARG 102 -150.83 24.93 3 A THR 109 -110.50 -168.82 3 A ASN 141 -144.85 33.61 3 A ARG 142 -172.58 -26.61 3 A ALA 143 -54.27 -174.42 4 A VAL 7 -134.99 -69.23 4 A PRO 16 -62.96 -166.28 4 A GLU 17 -57.13 104.76 4 A HIS 41 -29.58 -80.94 4 A VAL 51 -175.23 138.28 4 A SER 54 -101.77 -68.55 4 A MET 62 -32.72 -35.06 4 A THR 94 -55.88 170.28 4 A PRO 99 -57.27 -78.79 4 A ARG 102 -157.35 27.01 4 A THR 109 -113.63 -168.34 5 A SER 3 -113.92 60.82 5 A GLN 9 -151.41 35.59 5 A LYS 13 -145.16 55.81 5 A GLU 17 -167.48 42.10 5 A PRO 19 -75.90 -169.77 5 A HIS 41 -31.95 -81.49 5 A SER 47 -90.15 -146.07 5 A SER 54 -94.55 -77.04 5 A MET 62 -30.21 -35.49 5 A VAL 96 -151.79 -68.94 5 A PRO 99 -76.36 -101.41 5 A ARG 102 -172.61 41.59 5 A THR 109 -114.10 -169.24 5 A LYS 114 -69.57 94.94 5 A ALA 143 -57.55 107.97 6 A LYS 13 -156.46 83.48 6 A LYS 14 -153.11 45.68 6 A PRO 19 -53.25 -174.48 6 A ARG 42 1.45 -73.27 6 A MET 43 -37.27 -34.64 6 A SER 47 -123.23 -85.34 6 A ARG 48 -92.98 33.48 6 A ASN 50 -82.49 44.91 6 A VAL 51 -176.21 123.75 6 A SER 54 -99.95 -75.51 6 A MET 62 -31.37 -34.95 6 A VAL 96 -139.81 -84.05 6 A ARG 98 -178.95 67.26 6 A TYR 101 -34.21 140.85 6 A ARG 102 -165.99 55.34 6 A THR 109 -119.36 -169.87 6 A LYS 126 75.03 -1.59 6 A ASN 141 -135.64 -40.17 7 A ARG 39 -163.07 95.45 7 A SER 47 -161.48 117.43 7 A SER 54 -95.57 -64.24 7 A MET 62 -31.38 -36.93 7 A ASP 63 -97.37 30.23 7 A VAL 96 -151.04 -74.40 7 A THR 109 -110.97 -168.41 7 A LYS 126 47.56 22.05 8 A VAL 51 -175.23 138.00 8 A MET 62 -31.56 -36.23 8 A ASP 63 -95.31 30.03 8 A ASP 95 -166.36 -50.21 8 A PRO 99 -91.75 -105.11 8 A TYR 101 -123.75 -77.30 8 A THR 109 -110.01 -169.08 8 A PRO 139 -60.94 -176.77 9 A HIS 41 -33.95 -81.56 9 A SER 47 -148.02 -76.64 9 A ASN 50 -34.94 94.20 9 A MET 62 -31.13 -36.07 9 A VAL 96 -142.02 -92.18 9 A PRO 99 -77.60 -98.73 9 A THR 109 -117.93 -169.54 9 A SER 111 -67.65 97.34 10 A HIS 4 -172.06 -41.95 10 A ARG 39 -162.81 94.43 10 A VAL 51 -175.33 139.59 10 A PRO 52 -66.59 3.23 10 A SER 54 -93.59 -72.27 10 A MET 62 -32.15 -35.22 10 A ASP 63 -99.05 30.07 10 A PRO 99 -60.62 -84.78 10 A ARG 102 -176.75 41.15 10 A THR 109 -113.94 -168.71 10 A ALA 143 -56.04 107.54 10 A SER 147 -155.16 -52.91 11 A ARG 6 -60.12 -178.56 11 A PRO 16 -72.48 -167.52 11 A SER 47 -112.39 -161.45 11 A ASN 50 -78.51 48.48 11 A VAL 51 -176.17 137.44 11 A SER 54 -96.74 -73.55 11 A MET 62 -31.52 -37.48 11 A VAL 96 -133.40 -68.89 11 A PRO 99 -73.81 -98.67 11 A TYR 101 -41.30 103.77 11 A THR 109 -109.78 -168.63 12 A LYS 13 -164.36 50.76 12 A PRO 19 -73.26 -168.25 12 A ASP 21 -60.50 89.29 12 A SER 47 -92.60 -156.02 12 A SER 54 -92.34 -84.07 12 A MET 62 -29.81 -34.41 12 A PRO 99 -60.10 -86.74 12 A ARG 102 -145.03 32.85 12 A THR 109 -108.20 -168.98 12 A LYS 114 -67.66 90.70 12 A GLN 125 -92.36 42.78 12 A LYS 126 42.06 28.58 12 A ASP 131 -58.56 174.82 13 A ASP 21 -55.43 106.45 13 A ARG 42 -176.07 -176.95 13 A SER 47 -176.31 -52.35 13 A PRO 52 -81.63 37.17 13 A SER 54 -93.63 59.53 13 A MET 62 -29.06 -34.54 13 A VAL 96 -132.03 -81.98 13 A PRO 99 -84.72 -117.30 13 A THR 109 -122.89 -168.75 13 A LYS 126 71.62 -3.19 13 A SER 147 -128.58 -53.12 14 A VAL 7 -96.55 -60.31 14 A GLU 17 -164.48 51.69 14 A HIS 41 -33.45 -81.95 14 A PHE 46 -154.22 72.94 14 A SER 47 -179.05 -38.37 14 A ASN 50 -104.96 -91.52 14 A VAL 51 -175.47 108.63 14 A SER 53 -65.94 12.75 14 A MET 62 -30.72 -37.03 14 A THR 94 -54.74 170.01 14 A THR 109 -118.15 -168.33 14 A PRO 139 -54.05 175.57 14 A ALA 143 -59.69 109.16 14 A SER 147 -168.61 -58.37 15 A SER 3 -135.61 -45.92 15 A MET 5 -59.62 -74.11 15 A ARG 6 -54.49 173.37 15 A GLU 10 -93.34 45.23 15 A GLU 11 -150.60 24.17 15 A HIS 41 -31.33 -78.55 15 A ARG 42 -172.60 148.90 15 A VAL 51 -175.30 137.10 15 A SER 54 -94.20 -60.73 15 A MET 62 -30.53 -36.80 15 A ARG 98 -173.26 129.31 15 A TYR 101 -105.73 -79.44 15 A ARG 102 -169.21 75.64 15 A THR 109 -125.20 -169.41 15 A ASN 141 -97.21 46.82 15 A ARG 142 -165.99 -40.73 15 A ALA 143 -56.00 -174.10 16 A SER 3 -103.93 77.44 16 A HIS 4 -150.26 24.74 16 A GLU 11 -158.72 35.39 16 A HIS 41 -54.22 -8.39 16 A ARG 42 -9.51 -54.30 16 A SER 47 -151.95 30.91 16 A ARG 48 -159.20 79.63 16 A PRO 52 -59.48 101.78 16 A MET 62 -31.63 -34.96 16 A ASP 63 -89.16 30.13 16 A VAL 96 -156.13 -156.25 16 A ARG 98 -48.86 160.14 16 A TYR 101 -159.75 88.03 16 A THR 109 -113.52 -169.18 16 A PRO 140 -86.12 37.41 17 A LYS 13 -104.91 75.84 17 A HIS 41 -30.80 -80.99 17 A SER 54 -88.27 -79.84 17 A MET 62 -31.53 -34.69 17 A ASP 95 -120.35 -167.10 17 A VAL 96 -60.15 -157.02 17 A PRO 99 -86.80 -78.32 17 A TYR 101 -98.79 -74.42 17 A THR 109 -112.31 -168.91 17 A ARG 142 -153.76 23.09 18 A GLU 15 -50.22 106.58 18 A HIS 41 -31.59 -82.79 18 A SER 47 -176.74 -39.60 18 A VAL 51 -171.35 146.34 18 A SER 54 -91.14 -69.54 18 A MET 62 -31.70 -37.40 18 A VAL 96 -109.66 -72.64 18 A PRO 99 -90.71 -78.93 18 A THR 109 -112.99 -168.83 18 A LYS 126 75.96 -2.06 18 A ASP 131 -59.62 179.14 18 A PRO 140 -86.01 44.57 18 A ARG 142 -152.14 -23.72 19 A HIS 4 -157.20 -61.11 19 A GLN 9 -69.49 76.09 19 A GLU 10 -164.52 97.86 19 A GLU 17 -160.27 -44.98 19 A PRO 19 -57.17 -170.57 19 A PHE 46 -168.34 101.96 19 A SER 47 -169.37 -31.42 19 A ASN 50 -97.95 -74.39 19 A SER 54 -83.66 -77.88 19 A ASP 63 -92.63 30.15 19 A ASP 95 -164.03 -69.39 19 A TYR 101 -178.88 68.41 19 A THR 109 -121.37 -168.31 20 A GLU 11 -142.15 18.58 20 A PRO 19 -69.14 -167.36 20 A ARG 42 -11.10 -54.93 20 A SER 47 -147.78 -48.62 20 A ASN 50 -103.55 48.63 20 A VAL 51 -175.54 125.39 20 A SER 54 -92.85 -85.36 20 A MET 62 -30.81 -38.88 20 A VAL 96 -142.45 -61.19 20 A TYR 101 -46.98 103.74 20 A ARG 102 -143.95 28.82 20 A THR 109 -111.39 -169.51 20 A ASN 141 -158.65 33.36 20 A ARG 142 -174.23 -34.76 Solution Structure of Human SAP18 1 N N A ARG 42 A ARG 41 HELX_P A PHE 46 A PHE 45 5 1 5 A THR 65 A THR 64 HELX_P A TYR 77 A TYR 76 1 2 13 A TYR 77 A TYR 76 HELX_P A LYS 82 A LYS 81 1 3 6 A THR 121 A THR 120 HELX_P A LYS 126 A LYS 125 5 4 6 TRANSCRIPTION HDAC, histone deacetylase, Sin3, Gli, Bicoid, GAGA, transcriptional repressor, TRANSCRIPTION SAP18_HUMAN UNP 1 6 O00422 RVTQEEIKKEPEKPIDREKTCPLLLRVFTTNNGRHHRMDEFSRGNVPSSELQIYTWMDATLKELTSLVKEVYPEARKKGT HFNFAIVFTDVKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDIAITPPNRAPPPSGR 6 149 2HDE 6 149 O00422 A 1 5 148 1 cloning artifact GLY 2 2HDE A O00422 UNP 1 1 cloning artifact SER 3 2HDE A O00422 UNP 2 1 cloning artifact HIS 4 2HDE A O00422 UNP 3 1 cloning artifact MET 5 2HDE A O00422 UNP 4 1 CYS engineered mutation SER 26 2HDE A O00422 UNP 26 25 5 anti-parallel parallel anti-parallel anti-parallel A GLU 55 A GLU 54 A THR 60 A THR 59 A LEU 28 A LEU 27 A THR 35 A THR 34 A TYR 132 A TYR 131 A THR 138 A THR 137 A HIS 86 A HIS 85 A ILE 91 A ILE 90 A LYS 104 A LYS 103 A MET 110 A MET 109 1 P 1