0.016444
0.009494
0.000000
0.000000
0.018988
0.000000
0.000000
0.000000
0.015833
0.000000
0.000000
0.000000
Rong, H.
Teng, M.K.
Niu, L.W.
http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
6
90.000
90.000
120.000
60.812
60.812
63.158
C3 H7 N O2
89.093
y
ALANINE
L-peptide linking
C6 H15 N4 O2 1
175.209
y
ARGININE
L-peptide linking
C4 H8 N2 O3
132.118
y
ASPARAGINE
L-peptide linking
C4 H7 N O4
133.103
y
ASPARTIC ACID
L-peptide linking
C5 H10 N2 O3
146.144
y
GLUTAMINE
L-peptide linking
C5 H9 N O4
147.129
y
GLUTAMIC ACID
L-peptide linking
C2 H5 N O2
75.067
y
GLYCINE
peptide linking
C6 H10 N3 O2 1
156.162
y
HISTIDINE
L-peptide linking
H2 O
18.015
WATER
non-polymer
C6 H13 N O2
131.173
y
ISOLEUCINE
L-peptide linking
C6 H13 N O2
131.173
y
LEUCINE
L-peptide linking
C6 H15 N2 O2 1
147.195
y
LYSINE
L-peptide linking
C5 H11 N O2 S
149.211
y
METHIONINE
L-peptide linking
C9 H11 N O2
165.189
y
PHENYLALANINE
L-peptide linking
C5 H9 N O2
115.130
y
PROLINE
L-peptide linking
C3 H7 N O3
105.093
y
SERINE
L-peptide linking
C4 H9 N O3
119.119
y
THREONINE
L-peptide linking
C11 H12 N2 O2
204.225
y
TRYPTOPHAN
L-peptide linking
C9 H11 N O3
181.189
y
TYROSINE
L-peptide linking
C5 H11 N O2
117.146
y
VALINE
L-peptide linking
N
1
N
N
N
2
S
C
N
3
N
C
N
4
N
O
N
5
N
C
N
6
N
O
N
7
N
H
N
8
N
H
N
9
N
H
N
10
N
H
N
11
N
H
N
12
N
H
N
13
N
H
N
14
N
N
N
15
S
C
N
16
N
C
N
17
N
O
N
18
N
C
N
19
N
C
N
20
N
C
N
21
N
N
N
22
N
C
N
23
N
N
N
24
N
N
N
25
N
O
N
26
N
H
N
27
N
H
N
28
N
H
N
29
N
H
N
30
N
H
N
31
N
H
N
32
N
H
N
33
N
H
N
34
N
H
N
35
N
H
N
36
N
H
N
37
N
H
N
38
N
H
N
39
N
H
N
40
N
H
N
41
N
N
N
42
S
C
N
43
N
C
N
44
N
O
N
45
N
C
N
46
N
C
N
47
N
O
N
48
N
N
N
49
N
O
N
50
N
H
N
51
N
H
N
52
N
H
N
53
N
H
N
54
N
H
N
55
N
H
N
56
N
H
N
57
N
H
N
58
N
N
N
59
S
C
N
60
N
C
N
61
N
O
N
62
N
C
N
63
N
C
N
64
N
O
N
65
N
O
N
66
N
O
N
67
N
H
N
68
N
H
N
69
N
H
N
70
N
H
N
71
N
H
N
72
N
H
N
73
N
H
N
74
N
N
N
75
S
C
N
76
N
C
N
77
N
O
N
78
N
C
N
79
N
C
N
80
N
C
N
81
N
O
N
82
N
N
N
83
N
O
N
84
N
H
N
85
N
H
N
86
N
H
N
87
N
H
N
88
N
H
N
89
N
H
N
90
N
H
N
91
N
H
N
92
N
H
N
93
N
H
N
94
N
N
N
95
S
C
N
96
N
C
N
97
N
O
N
98
N
C
N
99
N
C
N
100
N
C
N
101
N
O
N
102
N
O
N
103
N
O
N
104
N
H
N
105
N
H
N
106
N
H
N
107
N
H
N
108
N
H
N
109
N
H
N
110
N
H
N
111
N
H
N
112
N
H
N
113
N
N
N
114
N
C
N
115
N
C
N
116
N
O
N
117
N
O
N
118
N
H
N
119
N
H
N
120
N
H
N
121
N
H
N
122
N
H
N
123
N
N
N
124
S
C
N
125
N
C
N
126
N
O
N
127
N
C
Y
128
N
C
Y
129
N
N
Y
130
N
C
Y
131
N
C
Y
132
N
N
N
133
N
O
N
134
N
H
N
135
N
H
N
136
N
H
N
137
N
H
N
138
N
H
N
139
N
H
N
140
N
H
N
141
N
H
N
142
N
H
N
143
N
H
N
144
N
O
N
145
N
H
N
146
N
H
N
147
N
N
N
148
S
C
N
149
N
C
N
150
N
O
N
151
S
C
N
152
N
C
N
153
N
C
N
154
N
C
N
155
N
O
N
156
N
H
N
157
N
H
N
158
N
H
N
159
N
H
N
160
N
H
N
161
N
H
N
162
N
H
N
163
N
H
N
164
N
H
N
165
N
H
N
166
N
H
N
167
N
H
N
168
N
H
N
169
N
N
N
170
S
C
N
171
N
C
N
172
N
O
N
173
N
C
N
174
N
C
N
175
N
C
N
176
N
C
N
177
N
O
N
178
N
H
N
179
N
H
N
180
N
H
N
181
N
H
N
182
N
H
N
183
N
H
N
184
N
H
N
185
N
H
N
186
N
H
N
187
N
H
N
188
N
H
N
189
N
H
N
190
N
H
N
191
N
N
N
192
S
C
N
193
N
C
N
194
N
O
N
195
N
C
N
196
N
C
N
197
N
C
N
198
N
C
N
199
N
N
N
200
N
O
N
201
N
H
N
202
N
H
N
203
N
H
N
204
N
H
N
205
N
H
N
206
N
H
N
207
N
H
N
208
N
H
N
209
N
H
N
210
N
H
N
211
N
H
N
212
N
H
N
213
N
H
N
214
N
H
N
215
N
H
N
216
N
N
N
217
S
C
N
218
N
C
N
219
N
O
N
220
N
C
N
221
N
C
N
222
N
S
N
223
N
C
N
224
N
O
N
225
N
H
N
226
N
H
N
227
N
H
N
228
N
H
N
229
N
H
N
230
N
H
N
231
N
H
N
232
N
H
N
233
N
H
N
234
N
H
N
235
N
H
N
236
N
N
N
237
S
C
N
238
N
C
N
239
N
O
N
240
N
C
Y
241
N
C
Y
242
N
C
Y
243
N
C
Y
244
N
C
Y
245
N
C
Y
246
N
C
N
247
N
O
N
248
N
H
N
249
N
H
N
250
N
H
N
251
N
H
N
252
N
H
N
253
N
H
N
254
N
H
N
255
N
H
N
256
N
H
N
257
N
H
N
258
N
H
N
259
N
N
N
260
S
C
N
261
N
C
N
262
N
O
N
263
N
C
N
264
N
C
N
265
N
C
N
266
N
O
N
267
N
H
N
268
N
H
N
269
N
H
N
270
N
H
N
271
N
H
N
272
N
H
N
273
N
H
N
274
N
H
N
275
N
H
N
276
N
N
N
277
S
C
N
278
N
C
N
279
N
O
N
280
N
C
N
281
N
O
N
282
N
O
N
283
N
H
N
284
N
H
N
285
N
H
N
286
N
H
N
287
N
H
N
288
N
H
N
289
N
H
N
290
N
N
N
291
S
C
N
292
N
C
N
293
N
O
N
294
R
C
N
295
N
O
N
296
N
C
N
297
N
O
N
298
N
H
N
299
N
H
N
300
N
H
N
301
N
H
N
302
N
H
N
303
N
H
N
304
N
H
N
305
N
H
N
306
N
H
N
307
N
N
N
308
S
C
N
309
N
C
N
310
N
O
N
311
N
C
Y
312
N
C
Y
313
N
C
Y
314
N
C
Y
315
N
N
Y
316
N
C
Y
317
N
C
Y
318
N
C
Y
319
N
C
Y
320
N
C
N
321
N
O
N
322
N
H
N
323
N
H
N
324
N
H
N
325
N
H
N
326
N
H
N
327
N
H
N
328
N
H
N
329
N
H
N
330
N
H
N
331
N
H
N
332
N
H
N
333
N
H
N
334
N
N
N
335
S
C
N
336
N
C
N
337
N
O
N
338
N
C
Y
339
N
C
Y
340
N
C
Y
341
N
C
Y
342
N
C
Y
343
N
C
Y
344
N
C
N
345
N
O
N
346
N
O
N
347
N
H
N
348
N
H
N
349
N
H
N
350
N
H
N
351
N
H
N
352
N
H
N
353
N
H
N
354
N
H
N
355
N
H
N
356
N
H
N
357
N
H
N
358
N
N
N
359
S
C
N
360
N
C
N
361
N
O
N
362
N
C
N
363
N
C
N
364
N
C
N
365
N
O
N
366
N
H
N
367
N
H
N
368
N
H
N
369
N
H
N
370
N
H
N
371
N
H
N
372
N
H
N
373
N
H
N
374
N
H
N
375
N
H
N
376
N
H
N
1
N
sing
N
2
N
sing
N
3
N
sing
N
4
N
sing
N
5
N
sing
N
6
N
sing
N
7
N
doub
N
8
N
sing
N
9
N
sing
N
10
N
sing
N
11
N
sing
N
12
N
sing
N
13
N
sing
N
14
N
sing
N
15
N
sing
N
16
N
sing
N
17
N
sing
N
18
N
sing
N
19
N
doub
N
20
N
sing
N
21
N
sing
N
22
N
sing
N
23
N
sing
N
24
N
sing
N
25
N
sing
N
26
N
sing
N
27
N
sing
N
28
N
sing
N
29
N
sing
N
30
N
sing
N
31
N
sing
N
32
N
sing
N
33
N
doub
N
34
N
sing
N
35
N
sing
N
36
N
sing
N
37
N
sing
N
38
N
sing
N
39
N
sing
N
40
N
sing
N
41
N
sing
N
42
N
sing
N
43
N
sing
N
44
N
sing
N
45
N
doub
N
46
N
sing
N
47
N
sing
N
48
N
sing
N
49
N
sing
N
50
N
doub
N
51
N
sing
N
52
N
sing
N
53
N
sing
N
54
N
sing
N
55
N
sing
N
56
N
sing
N
57
N
sing
N
58
N
sing
N
59
N
sing
N
60
N
sing
N
61
N
doub
N
62
N
sing
N
63
N
sing
N
64
N
sing
N
65
N
sing
N
66
N
doub
N
67
N
sing
N
68
N
sing
N
69
N
sing
N
70
N
sing
N
71
N
sing
N
72
N
sing
N
73
N
sing
N
74
N
sing
N
75
N
sing
N
76
N
doub
N
77
N
sing
N
78
N
sing
N
79
N
sing
N
80
N
sing
N
81
N
sing
N
82
N
sing
N
83
N
sing
N
84
N
doub
N
85
N
sing
N
86
N
sing
N
87
N
sing
N
88
N
sing
N
89
N
sing
N
90
N
sing
N
91
N
sing
N
92
N
sing
N
93
N
sing
N
94
N
sing
N
95
N
doub
N
96
N
sing
N
97
N
sing
N
98
N
sing
N
99
N
sing
N
100
N
sing
N
101
N
sing
N
102
N
sing
N
103
N
doub
N
104
N
sing
N
105
N
sing
N
106
N
sing
N
107
N
sing
N
108
N
sing
N
109
N
sing
N
110
N
sing
N
111
N
sing
N
112
N
sing
N
113
N
doub
N
114
N
sing
N
115
N
sing
N
116
N
sing
N
117
N
sing
N
118
N
sing
N
119
N
sing
N
120
N
sing
N
121
N
sing
N
122
N
doub
N
123
N
sing
N
124
N
sing
N
125
N
sing
N
126
N
sing
Y
127
N
sing
Y
128
N
doub
Y
129
N
doub
N
130
N
sing
Y
131
N
sing
N
132
N
sing
Y
133
N
sing
N
134
N
sing
N
135
N
sing
N
136
N
sing
N
137
N
sing
N
138
N
sing
N
139
N
sing
N
140
N
sing
N
141
N
sing
N
142
N
sing
N
143
N
sing
N
144
N
sing
N
145
N
doub
N
146
N
sing
N
147
N
sing
N
148
N
sing
N
149
N
sing
N
150
N
sing
N
151
N
sing
N
152
N
sing
N
153
N
sing
N
154
N
sing
N
155
N
sing
N
156
N
sing
N
157
N
sing
N
158
N
sing
N
159
N
sing
N
160
N
sing
N
161
N
sing
N
162
N
sing
N
163
N
sing
N
164
N
sing
N
165
N
sing
N
166
N
doub
N
167
N
sing
N
168
N
sing
N
169
N
sing
N
170
N
sing
N
171
N
sing
N
172
N
sing
N
173
N
sing
N
174
N
sing
N
175
N
sing
N
176
N
sing
N
177
N
sing
N
178
N
sing
N
179
N
sing
N
180
N
sing
N
181
N
sing
N
182
N
sing
N
183
N
sing
N
184
N
sing
N
185
N
sing
N
186
N
sing
N
187
N
doub
N
188
N
sing
N
189
N
sing
N
190
N
sing
N
191
N
sing
N
192
N
sing
N
193
N
sing
N
194
N
sing
N
195
N
sing
N
196
N
sing
N
197
N
sing
N
198
N
sing
N
199
N
sing
N
200
N
sing
N
201
N
sing
N
202
N
sing
N
203
N
sing
N
204
N
sing
N
205
N
sing
N
206
N
sing
N
207
N
sing
N
208
N
sing
N
209
N
sing
N
210
N
sing
N
211
N
doub
N
212
N
sing
N
213
N
sing
N
214
N
sing
N
215
N
sing
N
216
N
sing
N
217
N
sing
N
218
N
sing
N
219
N
sing
N
220
N
sing
N
221
N
sing
N
222
N
sing
N
223
N
sing
N
224
N
sing
N
225
N
sing
N
226
N
sing
N
227
N
sing
N
228
N
sing
N
229
N
sing
N
230
N
doub
N
231
N
sing
N
232
N
sing
N
233
N
sing
N
234
N
sing
Y
235
N
doub
Y
236
N
sing
Y
237
N
sing
N
238
N
sing
Y
239
N
doub
N
240
N
sing
Y
241
N
doub
N
242
N
sing
Y
243
N
sing
N
244
N
sing
N
245
N
sing
N
246
N
sing
N
247
N
sing
N
248
N
sing
N
249
N
sing
N
250
N
sing
N
251
N
sing
N
252
N
sing
N
253
N
doub
N
254
N
sing
N
255
N
sing
N
256
N
sing
N
257
N
sing
N
258
N
sing
N
259
N
sing
N
260
N
sing
N
261
N
sing
N
262
N
sing
N
263
N
sing
N
264
N
sing
N
265
N
sing
N
266
N
sing
N
267
N
sing
N
268
N
sing
N
269
N
sing
N
270
N
doub
N
271
N
sing
N
272
N
sing
N
273
N
sing
N
274
N
sing
N
275
N
sing
N
276
N
sing
N
277
N
sing
N
278
N
sing
N
279
N
sing
N
280
N
sing
N
281
N
sing
N
282
N
sing
N
283
N
doub
N
284
N
sing
N
285
N
sing
N
286
N
sing
N
287
N
sing
N
288
N
sing
N
289
N
sing
N
290
N
sing
N
291
N
sing
N
292
N
sing
N
293
N
sing
N
294
N
sing
N
295
N
sing
N
296
N
sing
N
297
N
sing
N
298
N
sing
N
299
N
doub
N
300
N
sing
N
301
N
sing
N
302
N
sing
N
303
N
sing
Y
304
N
doub
Y
305
N
sing
Y
306
N
sing
N
307
N
sing
Y
308
N
doub
Y
309
N
sing
Y
310
N
sing
N
311
N
sing
Y
312
N
sing
Y
313
N
doub
N
314
N
sing
Y
315
N
doub
N
316
N
sing
Y
317
N
sing
N
318
N
sing
N
319
N
sing
N
320
N
sing
N
321
N
sing
N
322
N
sing
N
323
N
sing
N
324
N
sing
N
325
N
sing
N
326
N
sing
N
327
N
doub
N
328
N
sing
N
329
N
sing
N
330
N
sing
N
331
N
sing
Y
332
N
doub
Y
333
N
sing
Y
334
N
sing
N
335
N
sing
Y
336
N
doub
N
337
N
sing
Y
338
N
doub
N
339
N
sing
Y
340
N
sing
N
341
N
sing
N
342
N
sing
N
343
N
sing
N
344
N
sing
N
345
N
sing
N
346
N
sing
N
347
N
sing
N
348
N
sing
N
349
N
sing
N
350
N
sing
N
351
N
doub
N
352
N
sing
N
353
N
sing
N
354
N
sing
N
355
N
sing
N
356
N
sing
N
357
N
sing
N
358
N
sing
N
359
N
sing
N
360
N
sing
N
361
N
sing
N
362
N
sing
DK
Acta Crystallogr.,Sect.D
ABCRE6
0766
0907-4449
63
730
737
10.1107/S0907444907017027
17505112
Structure of human upstream binding factor HMG box 5 and site for binding of the cell-cycle regulatory factor TAF1
2007
10.2210/pdb2hdz/pdb
pdb_00002hdz
100.0
1
100.0
1
1
CCD
2004-08-24
ADSC QUANTUM 210
CCD
2005-05-03
MAR CCD 165 mm
Bent triangular asymmetric cut Si(111) monochromater
SINGLE WAVELENGTH
M
x-ray
1
SINGLE WAVELENGTH
M
x-ray
1
0.9363
1.0
0.97985
1.0
A1
CHESS
0.9363
SYNCHROTRON
CHESS BEAMLINE A1
3W1A
BSRF
0.97985
SYNCHROTRON
BSRF BEAMLINE 3W1A
10891.573
Nucleolar transcription factor 1
HMG box 5
1
man
polymer
18.015
water
91
nat
water
Upstream-binding factor 1, UBF-1, Autoantigen NOR-90
no
no
MGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS
SKKLEHHHHHH
MGKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNS
SKKLEHHHHHH
A
polypeptide(L)
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
n
human
sample
UBF
9606
Homo sapiens
469008
Escherichia coli
BL21(DE3)
plasmid
pET22b
2
3.09
60.25
VAPOR DIFFUSION, HANGING DROP
7.5
NaCl, pH 7.5, vapor diffusion, hanging drop, temperature 277K
277
VAPOR DIFFUSION, HANGING DROP
7.5
Se-Met derivate, pH 7.5, vapor diffusion, hanging drop, temperature 277K
277
software
chem_comp_atom
chem_comp_bond
database_2
struct_ref_seq_dif
repository
Initial release
Version format compliance
Advisory
Version format compliance
Refinement description
Data collection
Database references
1
0
2007-06-26
1
1
2008-05-01
1
2
2011-07-13
1
3
2017-10-18
1
4
2024-03-13
_software.classification
_software.contact_author
_software.contact_author_email
_software.date
_software.language
_software.location
_software.name
_software.type
_software.version
_database_2.pdbx_DOI
_database_2.pdbx_database_accession
_struct_ref_seq_dif.details
RCSB
Y
PDBJ
2006-06-21
REL
REL
HOH
water
HOH
1
2
HOH
HOH
92
A
HOH
2
2
HOH
HOH
93
A
HOH
3
2
HOH
HOH
94
A
HOH
4
2
HOH
HOH
95
A
HOH
5
2
HOH
HOH
96
A
HOH
6
2
HOH
HOH
97
A
HOH
7
2
HOH
HOH
98
A
HOH
8
2
HOH
HOH
99
A
HOH
9
2
HOH
HOH
100
A
HOH
10
2
HOH
HOH
101
A
HOH
11
2
HOH
HOH
102
A
HOH
12
2
HOH
HOH
103
A
HOH
13
2
HOH
HOH
104
A
HOH
14
2
HOH
HOH
105
A
HOH
15
2
HOH
HOH
106
A
HOH
16
2
HOH
HOH
107
A
HOH
17
2
HOH
HOH
108
A
HOH
18
2
HOH
HOH
109
A
HOH
19
2
HOH
HOH
110
A
HOH
20
2
HOH
HOH
111
A
HOH
21
2
HOH
HOH
112
A
HOH
22
2
HOH
HOH
113
A
HOH
23
2
HOH
HOH
114
A
HOH
24
2
HOH
HOH
115
A
HOH
25
2
HOH
HOH
116
A
HOH
26
2
HOH
HOH
117
A
HOH
27
2
HOH
HOH
118
A
HOH
28
2
HOH
HOH
119
A
HOH
29
2
HOH
HOH
120
A
HOH
30
2
HOH
HOH
121
A
HOH
31
2
HOH
HOH
122
A
HOH
32
2
HOH
HOH
123
A
HOH
33
2
HOH
HOH
124
A
HOH
34
2
HOH
HOH
125
A
HOH
35
2
HOH
HOH
126
A
HOH
36
2
HOH
HOH
127
A
HOH
37
2
HOH
HOH
128
A
HOH
38
2
HOH
HOH
129
A
HOH
39
2
HOH
HOH
130
A
HOH
40
2
HOH
HOH
131
A
HOH
41
2
HOH
HOH
132
A
HOH
42
2
HOH
HOH
133
A
HOH
43
2
HOH
HOH
134
A
HOH
44
2
HOH
HOH
135
A
HOH
45
2
HOH
HOH
136
A
HOH
46
2
HOH
HOH
137
A
HOH
47
2
HOH
HOH
138
A
HOH
48
2
HOH
HOH
139
A
HOH
49
2
HOH
HOH
140
A
HOH
50
2
HOH
HOH
141
A
HOH
51
2
HOH
HOH
142
A
HOH
52
2
HOH
HOH
143
A
HOH
53
2
HOH
HOH
144
A
HOH
54
2
HOH
HOH
145
A
HOH
55
2
HOH
HOH
146
A
HOH
56
2
HOH
HOH
147
A
HOH
57
2
HOH
HOH
148
A
HOH
58
2
HOH
HOH
149
A
HOH
59
2
HOH
HOH
150
A
HOH
60
2
HOH
HOH
151
A
HOH
61
2
HOH
HOH
152
A
HOH
62
2
HOH
HOH
153
A
HOH
63
2
HOH
HOH
154
A
HOH
64
2
HOH
HOH
155
A
HOH
65
2
HOH
HOH
156
A
HOH
66
2
HOH
HOH
157
A
HOH
67
2
HOH
HOH
158
A
HOH
68
2
HOH
HOH
159
A
HOH
69
2
HOH
HOH
160
A
HOH
70
2
HOH
HOH
161
A
HOH
71
2
HOH
HOH
162
A
HOH
72
2
HOH
HOH
163
A
HOH
73
2
HOH
HOH
164
A
HOH
74
2
HOH
HOH
165
A
HOH
75
2
HOH
HOH
166
A
HOH
76
2
HOH
HOH
167
A
HOH
77
2
HOH
HOH
168
A
HOH
78
2
HOH
HOH
169
A
HOH
79
2
HOH
HOH
170
A
HOH
80
2
HOH
HOH
171
A
HOH
81
2
HOH
HOH
172
A
HOH
82
2
HOH
HOH
173
A
HOH
83
2
HOH
HOH
174
A
HOH
84
2
HOH
HOH
175
A
HOH
85
2
HOH
HOH
176
A
HOH
86
2
HOH
HOH
177
A
HOH
87
2
HOH
HOH
178
A
HOH
88
2
HOH
HOH
179
A
HOH
89
2
HOH
HOH
180
A
HOH
90
2
HOH
HOH
181
A
HOH
91
2
HOH
HOH
182
A
Se
60.000
0.647
0.615
0.167
1.867
Se
30.659
0.617
0.436
0.069
1.184
Se
56.215
0.191
0.665
0.058
1.283
Se
49.167
0.728
0.384
0.021
1.210
Se
46.083
0.993
0.546
0.015
1.338
0.540
133
0.620
217
0.560
277
0.510
324
0.390
345
0.330
382
0.370
405
0.350
439
0.600
0.600
0.490
4494
4245
249
0.940
0.950
0.870
199
169
30
0.890
0.910
0.640
609
559
50
0.860
0.880
0.650
749
709
40
0.720
0.730
0.580
755
715
40
0.430
0.440
0.200
1353
1293
60
0.220
0.220
0.050
829
800
29
n
1
1
A
n
2
2
A
n
3
3
A
LEU
4
n
4
LEU
4
A
PRO
5
n
5
PRO
5
A
GLU
6
n
6
GLU
6
A
SER
7
n
7
SER
7
A
PRO
8
n
8
PRO
8
A
LYS
9
n
9
LYS
9
A
ARG
10
n
10
ARG
10
A
ALA
11
n
11
ALA
11
A
GLU
12
n
12
GLU
12
A
GLU
13
n
13
GLU
13
A
ILE
14
n
14
ILE
14
A
TRP
15
n
15
TRP
15
A
GLN
16
n
16
GLN
16
A
GLN
17
n
17
GLN
17
A
SER
18
n
18
SER
18
A
VAL
19
n
19
VAL
19
A
ILE
20
n
20
ILE
20
A
GLY
21
n
21
GLY
21
A
ASP
22
n
22
ASP
22
A
TYR
23
n
23
TYR
23
A
LEU
24
n
24
LEU
24
A
ALA
25
n
25
ALA
25
A
ARG
26
n
26
ARG
26
A
PHE
27
n
27
PHE
27
A
LYS
28
n
28
LYS
28
A
ASN
29
n
29
ASN
29
A
ASP
30
n
30
ASP
30
A
ARG
31
n
31
ARG
31
A
VAL
32
n
32
VAL
32
A
LYS
33
n
33
LYS
33
A
ALA
34
n
34
ALA
34
A
LEU
35
n
35
LEU
35
A
LYS
36
n
36
LYS
36
A
ALA
37
n
37
ALA
37
A
MET
38
n
38
MET
38
A
GLU
39
n
39
GLU
39
A
MET
40
n
40
MET
40
A
THR
41
n
41
THR
41
A
TRP
42
n
42
TRP
42
A
ASN
43
n
43
ASN
43
A
ASN
44
n
44
ASN
44
A
MET
45
n
45
MET
45
A
GLU
46
n
46
GLU
46
A
LYS
47
n
47
LYS
47
A
LYS
48
n
48
LYS
48
A
GLU
49
n
49
GLU
49
A
LYS
50
n
50
LYS
50
A
LEU
51
n
51
LEU
51
A
MET
52
n
52
MET
52
A
TRP
53
n
53
TRP
53
A
ILE
54
n
54
ILE
54
A
LYS
55
n
55
LYS
55
A
LYS
56
n
56
LYS
56
A
ALA
57
n
57
ALA
57
A
ALA
58
n
58
ALA
58
A
GLU
59
n
59
GLU
59
A
ASP
60
n
60
ASP
60
A
GLN
61
n
61
GLN
61
A
LYS
62
n
62
LYS
62
A
ARG
63
n
63
ARG
63
A
TYR
64
n
64
TYR
64
A
GLU
65
n
65
GLU
65
A
ARG
66
n
66
ARG
66
A
GLU
67
n
67
GLU
67
A
LEU
68
n
68
LEU
68
A
SER
69
n
69
SER
69
A
n
70
70
A
n
71
71
A
n
72
72
A
n
73
73
A
n
74
74
A
n
75
75
A
n
76
76
A
n
77
77
A
n
78
78
A
n
79
79
A
n
80
80
A
n
81
81
A
n
82
82
A
n
83
83
A
n
84
84
A
n
85
85
A
n
86
86
A
n
87
87
A
n
88
88
A
n
89
89
A
n
90
90
A
n
91
91
A
0.1835
0.2800
-0.4824
1.0418
0.0501
2.2741
-0.0759
0.0000
-0.0044
0.0400
-0.0711
-0.0895
0.0108
-0.2072
0.1471
0.0077
-0.0202
0.0036
0.0131
-0.0005
0.0290
refined
28.2352
-17.7616
20.0748
X-RAY DIFFRACTION
A
4
A
4
A
69
A
69
X-RAY DIFFRACTION
1
author_defined_assembly
1
monomeric
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
0.0000000000
0.0000000000
0.0000000000
1.0000000000
1_555
x,y,z
identity operation
0.0000000000
0.0000000000
0.0000000000
1
A
MET
1
A
MET
1
1
Y
1
A
GLY
2
A
GLY
2
1
Y
1
A
LYS
3
A
LYS
3
1
Y
1
A
GLU
70
A
GLU
70
1
Y
1
A
MET
71
A
MET
71
1
Y
1
A
ARG
72
A
ARG
72
1
Y
1
A
ALA
73
A
ALA
73
1
Y
1
A
PRO
74
A
PRO
74
1
Y
1
A
PRO
75
A
PRO
75
1
Y
1
A
ALA
76
A
ALA
76
1
Y
1
A
ALA
77
A
ALA
77
1
Y
1
A
THR
78
A
THR
78
1
Y
1
A
ASN
79
A
ASN
79
1
Y
1
A
SER
80
A
SER
80
1
Y
1
A
SER
81
A
SER
81
1
Y
1
A
LYS
82
A
LYS
82
1
Y
1
A
LYS
83
A
LYS
83
1
Y
1
A
LEU
84
A
LEU
84
1
Y
1
A
GLU
85
A
GLU
85
1
Y
1
A
HIS
86
A
HIS
86
1
Y
1
A
HIS
87
A
HIS
87
1
Y
1
A
HIS
88
A
HIS
88
1
Y
1
A
HIS
89
A
HIS
89
1
Y
1
A
HIS
90
A
HIS
90
1
Y
1
A
HIS
91
A
HIS
91
1
Y
1
A
A
N
O
LEU
HOH
4
180
2.06
3.00
30.00
0.430
2522
28.535
2.210
1.110
0.000
2.210
0.000
-3.320
0.936
0.908
HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS
0.267
0.217
0.22
0.21953
2.000
10.000
425
8492
8492
4.800
99.490
7.751
0.100
RANDOM
LIKELY RESIDUAL
1
THROUGHOUT
0.00
SAD
0.147
0.151
0.800
0.800
1.200
MAXIMUM LIKELIHOOD
MASK
2.000
10.000
91
652
0
0
561
0.013
0.022
571
1.446
1.961
761
4.993
5.000
65
37.991
24.483
29
11.677
15.000
125
16.373
15.000
5
0.102
0.200
76
0.005
0.020
418
0.200
0.200
260
0.294
0.200
394
0.219
0.200
47
0.130
0.200
17
0.270
0.200
5
1.114
1.500
347
1.504
2.000
528
3.009
3.000
271
4.539
4.500
233
0.283
0.205
2.050
30
579
609
20
95.600
2.000
30.000
2HDZ
9000
8917
2.0
2.0
0.046
0.049
3.012
1,2
35.600
11.100
99.300
0.185
2.00
2.03
431
2.468
1,2
10.00
93.30
data reduction
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
DENZO
package
data scaling
Zbyszek Otwinowski
zbyszek@mix.swmed.edu
http://www.lnls.br/infra/linhasluz/denzo-hkl.htm
SCALEPACK
package
phasing
Tom Terwilliger
terwilliger@LANL.gov
25-Apr-2005
http://www.solve.lanl.gov/
SOLVE
package
2.09
phasing
Terwilliger, T. C
terwilliger@LANL.gov
25-Apr-2005
http://www.solve.lanl.gov/
RESOLVE
package
2.09
refinement
Murshudov, G.N.
ccp4@dl.ac.uk
Fortran_77
http://www.ccp4.ac.uk/main.html
REFMAC
program
data extraction
PDB
sw-help@rcsb.rutgers.edu
April. 3, 2006
C++
http://pdb.rutgers.edu/software/
PDB_EXTRACT
package
2.000
data collection
ADSC
Crystal Structure Analysis of the UBF HMG box5
1
N
N
2
N
N
A
ARG
10
A
ARG
10
HELX_P
A
PHE
27
A
PHE
27
1
1
18
A
ASP
30
A
ASP
30
HELX_P
A
MET
45
A
MET
45
1
2
16
A
GLU
46
A
GLU
46
HELX_P
A
SER
69
A
SER
69
1
3
24
PROTEIN BINDING
HMG domain, PROTEIN BINDING
UBF1_HUMAN
UNP
1
479
P17480
GKLPESPKRAEEIWQQSVIGDYLARFKNDRVKALKAMEMTWNNMEKKEKLMWIKKAAEDQKRYERELSEMRAPPAATNSS
KK
479
560
2HDZ
2
83
P17480
A
1
2
83
1
initiating methionine
MET
1
2HDZ
A
P17480
UNP
1
1
expression tag
LEU
84
2HDZ
A
P17480
UNP
84
1
expression tag
GLU
85
2HDZ
A
P17480
UNP
85
1
expression tag
HIS
86
2HDZ
A
P17480
UNP
86
1
expression tag
HIS
87
2HDZ
A
P17480
UNP
87
1
expression tag
HIS
88
2HDZ
A
P17480
UNP
88
1
expression tag
HIS
89
2HDZ
A
P17480
UNP
89
1
expression tag
HIS
90
2HDZ
A
P17480
UNP
90
1
expression tag
HIS
91
2HDZ
A
P17480
UNP
91
170
P 65