0.009839 0.000000 0.000000 0.000000 0.009839 0.000000 0.000000 0.000000 0.013993 0.00000 0.00000 0.00000 Liu, W. Alfonta, L. Mack, A.V. Schultz, P.G. http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic 8 90.00 90.00 90.00 101.639 101.639 71.466 C3 H7 N O2 89.093 y ALANINE L-peptide linking C6 H15 N4 O2 1 175.209 y ARGININE L-peptide linking C4 H8 N2 O3 132.118 y ASPARAGINE L-peptide linking C4 H7 N O4 133.103 y ASPARTIC ACID L-peptide linking C3 H7 N O2 S 121.158 y CYSTEINE L-peptide linking C5 H10 N2 O3 146.144 y GLUTAMINE L-peptide linking C5 H9 N O4 147.129 y GLUTAMIC ACID L-peptide linking C2 H5 N O2 75.067 y GLYCINE peptide linking C6 H10 N3 O2 1 156.162 y HISTIDINE L-peptide linking H2 O 18.015 WATER non-polymer C6 H13 N O2 131.173 y ISOLEUCINE L-peptide linking C6 H13 N O2 131.173 y LEUCINE L-peptide linking C6 H15 N2 O2 1 147.195 y LYSINE L-peptide linking C5 H11 N O2 S 149.211 y METHIONINE L-peptide linking C16 H15 N O3 269.295 n PARA-(BENZOYL)-PHENYLALANINE L-peptide linking C9 H11 N O2 165.189 y PHENYLALANINE L-peptide linking C5 H9 N O2 115.130 y PROLINE L-peptide linking C3 H7 N O3 105.093 y SERINE L-peptide linking C4 H9 N O3 119.119 y THREONINE L-peptide linking C9 H11 N O3 181.189 y TYROSINE L-peptide linking C5 H11 N O2 117.146 y VALINE L-peptide linking N 1 N N N 2 S C N 3 N C N 4 N O N 5 N C N 6 N O N 7 N H N 8 N H N 9 N H N 10 N H N 11 N H N 12 N H N 13 N H N 14 N N N 15 S C N 16 N C N 17 N O N 18 N C N 19 N C N 20 N C N 21 N N N 22 N C N 23 N N N 24 N N N 25 N O N 26 N H N 27 N H N 28 N H N 29 N H N 30 N H N 31 N H N 32 N H N 33 N H N 34 N H N 35 N H N 36 N H N 37 N H N 38 N H N 39 N H N 40 N H N 41 N N N 42 S C N 43 N C N 44 N O N 45 N C N 46 N C N 47 N O N 48 N N N 49 N O N 50 N H N 51 N H N 52 N H N 53 N H N 54 N H N 55 N H N 56 N H N 57 N H N 58 N N N 59 S C N 60 N C N 61 N O N 62 N C N 63 N C N 64 N O N 65 N O N 66 N O N 67 N H N 68 N H N 69 N H N 70 N H N 71 N H N 72 N H N 73 N H N 74 N N N 75 R C N 76 N C N 77 N O N 78 N C N 79 N S N 80 N O N 81 N H N 82 N H N 83 N H N 84 N H N 85 N H N 86 N H N 87 N H N 88 N N N 89 S C N 90 N C N 91 N O N 92 N C N 93 N C N 94 N C N 95 N O N 96 N N N 97 N O N 98 N H N 99 N H N 100 N H N 101 N H N 102 N H N 103 N H N 104 N H N 105 N H N 106 N H N 107 N H N 108 N N N 109 S C N 110 N C N 111 N O N 112 N C N 113 N C N 114 N C N 115 N O N 116 N O N 117 N O N 118 N H N 119 N H N 120 N H N 121 N H N 122 N H N 123 N H N 124 N H N 125 N H N 126 N H N 127 N N N 128 N C N 129 N C N 130 N O N 131 N O N 132 N H N 133 N H N 134 N H N 135 N H N 136 N H N 137 N N N 138 S C N 139 N C N 140 N O N 141 N C Y 142 N C Y 143 N N Y 144 N C Y 145 N C Y 146 N N N 147 N O N 148 N H N 149 N H N 150 N H N 151 N H N 152 N H N 153 N H N 154 N H N 155 N H N 156 N H N 157 N H N 158 N O N 159 N H N 160 N H N 161 N N N 162 S C N 163 N C N 164 N O N 165 S C N 166 N C N 167 N C N 168 N C N 169 N O N 170 N H N 171 N H N 172 N H N 173 N H N 174 N H N 175 N H N 176 N H N 177 N H N 178 N H N 179 N H N 180 N H N 181 N H N 182 N H N 183 N N N 184 S C N 185 N C N 186 N O N 187 N C N 188 N C N 189 N C N 190 N C N 191 N O N 192 N H N 193 N H N 194 N H N 195 N H N 196 N H N 197 N H N 198 N H N 199 N H N 200 N H N 201 N H N 202 N H N 203 N H N 204 N H N 205 N N N 206 S C N 207 N C N 208 N O N 209 N C N 210 N C N 211 N C N 212 N C N 213 N N N 214 N O N 215 N H N 216 N H N 217 N H N 218 N H N 219 N H N 220 N H N 221 N H N 222 N H N 223 N H N 224 N H N 225 N H N 226 N H N 227 N H N 228 N H N 229 N H N 230 N N N 231 S C N 232 N C N 233 N O N 234 N C N 235 N C N 236 N S N 237 N C N 238 N O N 239 N H N 240 N H N 241 N H N 242 N H N 243 N H N 244 N H N 245 N H N 246 N H N 247 N H N 248 N H N 249 N H N 250 N N N 251 N C N 252 N O N 253 S C N 254 N C Y 255 N C Y 256 N C Y 257 N C Y 258 N C Y 259 N C Y 260 N C N 261 N C N 262 N O Y 263 N C Y 264 N C Y 265 N C Y 266 N C Y 267 N C Y 268 N C N 269 N O N 270 N H N 271 N H N 272 N H N 273 N H N 274 N H N 275 N H N 276 N H N 277 N H N 278 N H N 279 N H N 280 N H N 281 N H N 282 N H N 283 N H N 284 N H N 285 N N N 286 S C N 287 N C N 288 N O N 289 N C Y 290 N C Y 291 N C Y 292 N C Y 293 N C Y 294 N C Y 295 N C N 296 N O N 297 N H N 298 N H N 299 N H N 300 N H N 301 N H N 302 N H N 303 N H N 304 N H N 305 N H N 306 N H N 307 N H N 308 N N N 309 S C N 310 N C N 311 N O N 312 N C N 313 N C N 314 N C N 315 N O N 316 N H N 317 N H N 318 N H N 319 N H N 320 N H N 321 N H N 322 N H N 323 N H N 324 N H N 325 N N N 326 S C N 327 N C N 328 N O N 329 N C N 330 N O N 331 N O N 332 N H N 333 N H N 334 N H N 335 N H N 336 N H N 337 N H N 338 N H N 339 N N N 340 S C N 341 N C N 342 N O N 343 R C N 344 N O N 345 N C N 346 N O N 347 N H N 348 N H N 349 N H N 350 N H N 351 N H N 352 N H N 353 N H N 354 N H N 355 N H N 356 N N N 357 S C N 358 N C N 359 N O N 360 N C Y 361 N C Y 362 N C Y 363 N C Y 364 N C Y 365 N C Y 366 N C N 367 N O N 368 N O N 369 N H N 370 N H N 371 N H N 372 N H N 373 N H N 374 N H N 375 N H N 376 N H N 377 N H N 378 N H N 379 N H N 380 N N N 381 S C N 382 N C N 383 N O N 384 N C N 385 N C N 386 N C N 387 N O N 388 N H N 389 N H N 390 N H N 391 N H N 392 N H N 393 N H N 394 N H N 395 N H N 396 N H N 397 N H N 398 N H N 1 N sing N 2 N sing N 3 N sing N 4 N sing N 5 N sing N 6 N sing N 7 N doub N 8 N sing N 9 N sing N 10 N sing N 11 N sing N 12 N sing N 13 N sing N 14 N sing N 15 N sing N 16 N sing N 17 N sing N 18 N sing N 19 N doub N 20 N sing N 21 N sing N 22 N sing N 23 N sing N 24 N sing N 25 N sing N 26 N sing N 27 N sing N 28 N sing N 29 N sing N 30 N sing N 31 N sing N 32 N sing N 33 N doub N 34 N sing N 35 N sing N 36 N sing N 37 N sing N 38 N sing N 39 N sing N 40 N sing N 41 N sing N 42 N sing N 43 N sing N 44 N sing N 45 N doub N 46 N sing N 47 N sing N 48 N sing N 49 N sing N 50 N doub N 51 N sing N 52 N sing N 53 N sing N 54 N sing N 55 N sing N 56 N sing N 57 N sing N 58 N sing N 59 N sing N 60 N sing N 61 N doub N 62 N sing N 63 N sing N 64 N sing N 65 N sing N 66 N doub N 67 N sing N 68 N sing N 69 N sing N 70 N sing N 71 N sing N 72 N sing N 73 N sing N 74 N sing N 75 N sing N 76 N doub N 77 N sing N 78 N sing N 79 N sing N 80 N sing N 81 N sing N 82 N sing N 83 N sing N 84 N sing N 85 N sing N 86 N sing N 87 N sing N 88 N sing N 89 N doub N 90 N sing N 91 N sing N 92 N sing N 93 N sing N 94 N sing N 95 N sing N 96 N sing N 97 N doub N 98 N sing N 99 N sing N 100 N sing N 101 N sing N 102 N sing N 103 N sing N 104 N sing N 105 N sing N 106 N sing N 107 N sing N 108 N doub N 109 N sing N 110 N sing N 111 N sing N 112 N sing N 113 N sing N 114 N sing N 115 N sing N 116 N doub N 117 N sing N 118 N sing N 119 N sing N 120 N sing N 121 N sing N 122 N sing N 123 N sing N 124 N sing N 125 N sing N 126 N doub N 127 N sing N 128 N sing N 129 N sing N 130 N sing N 131 N sing N 132 N sing N 133 N sing N 134 N sing N 135 N doub N 136 N sing N 137 N sing N 138 N sing N 139 N sing Y 140 N sing Y 141 N doub Y 142 N doub N 143 N sing Y 144 N sing N 145 N sing Y 146 N sing N 147 N sing N 148 N sing N 149 N sing N 150 N sing N 151 N sing N 152 N sing N 153 N sing N 154 N sing N 155 N sing N 156 N sing N 157 N sing N 158 N doub N 159 N sing N 160 N sing N 161 N sing N 162 N sing N 163 N sing N 164 N sing N 165 N sing N 166 N sing N 167 N sing N 168 N sing N 169 N sing N 170 N sing N 171 N sing N 172 N sing N 173 N sing N 174 N sing N 175 N sing N 176 N sing N 177 N sing N 178 N sing N 179 N doub N 180 N sing N 181 N sing N 182 N sing N 183 N sing N 184 N sing N 185 N sing N 186 N sing N 187 N sing N 188 N sing N 189 N sing N 190 N sing N 191 N sing N 192 N sing N 193 N sing N 194 N sing N 195 N sing N 196 N sing N 197 N sing N 198 N sing N 199 N sing N 200 N doub N 201 N sing N 202 N sing N 203 N sing N 204 N sing N 205 N sing N 206 N sing N 207 N sing N 208 N sing N 209 N sing N 210 N sing N 211 N sing N 212 N sing N 213 N sing N 214 N sing N 215 N sing N 216 N sing N 217 N sing N 218 N sing N 219 N sing N 220 N sing N 221 N sing N 222 N sing N 223 N sing N 224 N doub N 225 N sing N 226 N sing N 227 N sing N 228 N sing N 229 N sing N 230 N sing N 231 N sing N 232 N sing N 233 N sing N 234 N sing N 235 N sing N 236 N sing N 237 N sing N 238 N sing N 239 N sing N 240 N doub N 241 N sing N 242 N sing N 243 N sing N 244 N sing N 245 N sing N 246 N sing N 247 N sing Y 248 N doub Y 249 N sing Y 250 N sing N 251 N sing Y 252 N doub N 253 N sing Y 254 N doub N 255 N sing Y 256 N sing N 257 N sing N 258 N sing N 259 N doub N 260 N sing Y 261 N doub Y 262 N sing Y 263 N sing N 264 N sing Y 265 N doub N 266 N sing Y 267 N doub N 268 N sing Y 269 N sing N 270 N sing N 271 N sing N 272 N sing N 273 N sing N 274 N sing N 275 N sing N 276 N sing N 277 N sing N 278 N sing N 279 N doub N 280 N sing N 281 N sing N 282 N sing N 283 N sing Y 284 N doub Y 285 N sing Y 286 N sing N 287 N sing Y 288 N doub N 289 N sing Y 290 N doub N 291 N sing Y 292 N sing N 293 N sing N 294 N sing N 295 N sing N 296 N sing N 297 N sing N 298 N sing N 299 N sing N 300 N sing N 301 N sing N 302 N doub N 303 N sing N 304 N sing N 305 N sing N 306 N sing N 307 N sing N 308 N sing N 309 N sing N 310 N sing N 311 N sing N 312 N sing N 313 N sing N 314 N sing N 315 N sing N 316 N sing N 317 N sing N 318 N sing N 319 N doub N 320 N sing N 321 N sing N 322 N sing N 323 N sing N 324 N sing N 325 N sing N 326 N sing N 327 N sing N 328 N sing N 329 N sing N 330 N sing N 331 N sing N 332 N doub N 333 N sing N 334 N sing N 335 N sing N 336 N sing N 337 N sing N 338 N sing N 339 N sing N 340 N sing N 341 N sing N 342 N sing N 343 N sing N 344 N sing N 345 N sing N 346 N sing N 347 N sing N 348 N doub N 349 N sing N 350 N sing N 351 N sing N 352 N sing Y 353 N doub Y 354 N sing Y 355 N sing N 356 N sing Y 357 N doub N 358 N sing Y 359 N doub N 360 N sing Y 361 N sing N 362 N sing N 363 N sing N 364 N sing N 365 N sing N 366 N sing N 367 N sing N 368 N sing N 369 N sing N 370 N sing N 371 N sing N 372 N doub N 373 N sing N 374 N sing N 375 N sing N 376 N sing N 377 N sing N 378 N sing N 379 N sing N 380 N sing N 381 N sing N 382 N sing N 383 N sing GE Angew.Chem.Int.Ed.Engl. 9999 1433-7851 46 6073 6075 10.1002/anie.200701990 17628477 Structural basis for the recognition of para-benzoyl-L-phenylalanine by evolved aminoacyl-tRNA synthetases. 2007 10.2210/pdb2hgz/pdb pdb_00002hgz 1.000000 0.000000 0.000000 0.000000 1.000000 0.000000 0.000000 0.000000 1.000000 0.00000 0.00000 0.00000 100 1 CCD 2006-05-09 ADSC QUANTUM 4 Si(220) crystal SINGLE WAVELENGTH M x-ray 1 1.00 1.0 5.0.3 ALS 1.00 SYNCHROTRON ALS BEAMLINE 5.0.3 34928.664 Tyrosyl-tRNA synthetase 6.1.1.1 Y32G/D158T/I159S 1 man polymer 269.295 PARA-(BENZOYL)-PHENYLALANINE 1 syn non-polymer 18.015 water 132 nat water Tyrosine--tRNA ligase, TyrRS no no DEFEMIKRNTSEIISEEELREVLKKDEKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELDE IRKIGDYNKKVFEAMGLKAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHR LGVDVAVGGMEQRKIHMLARELLPKKVVMIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPI MEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRLL DEFEMIKRNTSEIISEEELREVLKKDEKSAGIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELDE IRKIGDYNKKVFEAMGLKAKYVYGSPFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNTSHR LGVDVAVGGMEQRKIHMLARELLPKKVVMIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPI MEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRLL A polypeptide(L) n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n n Methanocaldococcus Escherichia sample tyrS 2190 Methanocaldococcus jannaschii 562 Escherichia coli pET22b(+) plasmid 1 2.64 53.43 VAPOR DIFFUSION, HANGING DROP 8.5 5 mM p-benzoyl-L-phenylalanine, 100 mM Tris-HCl, 5% PEG8K, 8-20% PEG300, and 9% glycerol, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K 293 database_2 struct_ref_seq_dif struct_site chem_comp_atom chem_comp_bond pdbx_initial_refinement_model repository Initial release Version format compliance Derived calculations Version format compliance Database references Derived calculations Data collection Refinement description 1 0 2007-06-05 1 1 2008-02-06 1 2 2011-07-13 1 3 2021-10-20 1 4 2024-02-14 1 5 2024-04-03 _database_2.pdbx_DOI _database_2.pdbx_database_accession _struct_ref_seq_dif.details _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id Y RCSB Y RCSB 2006-06-27 REL REL PBF PARA-(BENZOYL)-PHENYLALANINE HOH water 1J1U PDB experimental model PBP 1 2 PBF PBF 308 A HOH 1 3 HOH HOH 309 A HOH 2 3 HOH HOH 310 A HOH 3 3 HOH HOH 311 A HOH 4 3 HOH HOH 312 A HOH 5 3 HOH HOH 313 A HOH 6 3 HOH HOH 314 A HOH 7 3 HOH HOH 315 A HOH 8 3 HOH HOH 316 A HOH 9 3 HOH HOH 317 A HOH 10 3 HOH HOH 318 A HOH 11 3 HOH HOH 319 A HOH 12 3 HOH HOH 320 A HOH 13 3 HOH HOH 321 A HOH 14 3 HOH HOH 322 A HOH 15 3 HOH HOH 323 A HOH 16 3 HOH HOH 324 A HOH 17 3 HOH HOH 325 A HOH 18 3 HOH HOH 326 A HOH 19 3 HOH HOH 327 A HOH 20 3 HOH HOH 328 A HOH 21 3 HOH HOH 329 A HOH 22 3 HOH HOH 330 A HOH 23 3 HOH HOH 331 A HOH 24 3 HOH HOH 332 A HOH 25 3 HOH HOH 333 A HOH 26 3 HOH HOH 334 A HOH 27 3 HOH HOH 335 A HOH 28 3 HOH HOH 336 A HOH 29 3 HOH HOH 337 A HOH 30 3 HOH HOH 338 A HOH 31 3 HOH HOH 339 A HOH 32 3 HOH HOH 340 A HOH 33 3 HOH HOH 341 A HOH 34 3 HOH HOH 342 A HOH 35 3 HOH HOH 343 A HOH 36 3 HOH HOH 344 A HOH 37 3 HOH HOH 345 A HOH 38 3 HOH HOH 346 A HOH 39 3 HOH HOH 347 A HOH 40 3 HOH HOH 348 A HOH 41 3 HOH HOH 349 A HOH 42 3 HOH HOH 350 A HOH 43 3 HOH HOH 351 A HOH 44 3 HOH HOH 352 A HOH 45 3 HOH HOH 353 A HOH 46 3 HOH HOH 354 A HOH 47 3 HOH HOH 355 A HOH 48 3 HOH HOH 356 A HOH 49 3 HOH HOH 357 A HOH 50 3 HOH HOH 358 A HOH 51 3 HOH HOH 359 A HOH 52 3 HOH HOH 360 A HOH 53 3 HOH HOH 361 A HOH 54 3 HOH HOH 362 A HOH 55 3 HOH HOH 363 A HOH 56 3 HOH HOH 364 A HOH 57 3 HOH HOH 365 A HOH 58 3 HOH HOH 366 A HOH 59 3 HOH HOH 367 A HOH 60 3 HOH HOH 368 A HOH 61 3 HOH HOH 369 A HOH 62 3 HOH HOH 370 A HOH 63 3 HOH HOH 371 A HOH 64 3 HOH HOH 372 A HOH 65 3 HOH HOH 373 A HOH 66 3 HOH HOH 374 A HOH 67 3 HOH HOH 375 A HOH 68 3 HOH HOH 376 A HOH 69 3 HOH HOH 377 A HOH 70 3 HOH HOH 378 A HOH 71 3 HOH HOH 379 A HOH 72 3 HOH HOH 380 A HOH 73 3 HOH HOH 381 A HOH 74 3 HOH HOH 382 A HOH 75 3 HOH HOH 383 A HOH 76 3 HOH HOH 384 A HOH 77 3 HOH HOH 385 A HOH 78 3 HOH HOH 386 A HOH 79 3 HOH HOH 387 A HOH 80 3 HOH HOH 388 A HOH 81 3 HOH HOH 389 A HOH 82 3 HOH HOH 390 A HOH 83 3 HOH HOH 391 A HOH 84 3 HOH HOH 392 A HOH 85 3 HOH HOH 393 A HOH 86 3 HOH HOH 394 A HOH 87 3 HOH HOH 395 A HOH 88 3 HOH HOH 396 A HOH 89 3 HOH HOH 397 A HOH 90 3 HOH HOH 398 A HOH 91 3 HOH HOH 399 A HOH 92 3 HOH HOH 400 A HOH 93 3 HOH HOH 401 A HOH 94 3 HOH HOH 402 A HOH 95 3 HOH HOH 403 A HOH 96 3 HOH HOH 404 A HOH 97 3 HOH HOH 405 A HOH 98 3 HOH HOH 406 A HOH 99 3 HOH HOH 407 A HOH 100 3 HOH HOH 408 A HOH 101 3 HOH HOH 409 A HOH 102 3 HOH HOH 410 A HOH 103 3 HOH HOH 411 A HOH 104 3 HOH HOH 412 A HOH 105 3 HOH HOH 413 A HOH 106 3 HOH HOH 414 A HOH 107 3 HOH HOH 415 A HOH 108 3 HOH HOH 416 A HOH 109 3 HOH HOH 417 A HOH 110 3 HOH HOH 418 A HOH 111 3 HOH HOH 419 A HOH 112 3 HOH HOH 420 A HOH 113 3 HOH HOH 421 A HOH 114 3 HOH HOH 422 A HOH 115 3 HOH HOH 423 A HOH 116 3 HOH HOH 424 A HOH 117 3 HOH HOH 425 A HOH 118 3 HOH HOH 426 A HOH 119 3 HOH HOH 427 A HOH 120 3 HOH HOH 428 A HOH 121 3 HOH HOH 429 A HOH 122 3 HOH HOH 430 A HOH 123 3 HOH HOH 431 A HOH 124 3 HOH HOH 432 A HOH 125 3 HOH HOH 433 A HOH 126 3 HOH HOH 434 A HOH 127 3 HOH HOH 435 A HOH 128 3 HOH HOH 436 A HOH 129 3 HOH HOH 437 A HOH 130 3 HOH HOH 438 A HOH 131 3 HOH HOH 439 A HOH 132 3 HOH HOH 440 A ASP 2 n 1 ASP 2 A GLU 3 n 2 GLU 3 A PHE 4 n 3 PHE 4 A GLU 5 n 4 GLU 5 A MET 6 n 5 MET 6 A ILE 7 n 6 ILE 7 A LYS 8 n 7 LYS 8 A ARG 9 n 8 ARG 9 A ASN 10 n 9 ASN 10 A THR 11 n 10 THR 11 A SER 12 n 11 SER 12 A GLU 13 n 12 GLU 13 A ILE 14 n 13 ILE 14 A ILE 15 n 14 ILE 15 A SER 16 n 15 SER 16 A GLU 17 n 16 GLU 17 A GLU 18 n 17 GLU 18 A GLU 19 n 18 GLU 19 A LEU 20 n 19 LEU 20 A ARG 21 n 20 ARG 21 A GLU 22 n 21 GLU 22 A VAL 23 n 22 VAL 23 A LEU 24 n 23 LEU 24 A LYS 25 n 24 LYS 25 A LYS 26 n 25 LYS 26 A ASP 27 n 26 ASP 27 A GLU 28 n 27 GLU 28 A LYS 29 n 28 LYS 29 A SER 30 n 29 SER 30 A ALA 31 n 30 ALA 31 A GLY 32 n 31 GLY 32 A ILE 33 n 32 ILE 33 A GLY 34 n 33 GLY 34 A PHE 35 n 34 PHE 35 A GLU 36 n 35 GLU 36 A PRO 37 n 36 PRO 37 A SER 38 n 37 SER 38 A GLY 39 n 38 GLY 39 A LYS 40 n 39 LYS 40 A ILE 41 n 40 ILE 41 A HIS 42 n 41 HIS 42 A LEU 43 n 42 LEU 43 A GLY 44 n 43 GLY 44 A HIS 45 n 44 HIS 45 A TYR 46 n 45 TYR 46 A LEU 47 n 46 LEU 47 A GLN 48 n 47 GLN 48 A ILE 49 n 48 ILE 49 A LYS 50 n 49 LYS 50 A LYS 51 n 50 LYS 51 A MET 52 n 51 MET 52 A ILE 53 n 52 ILE 53 A ASP 54 n 53 ASP 54 A LEU 55 n 54 LEU 55 A GLN 56 n 55 GLN 56 A ASN 57 n 56 ASN 57 A ALA 58 n 57 ALA 58 A GLY 59 n 58 GLY 59 A PHE 60 n 59 PHE 60 A ASP 61 n 60 ASP 61 A ILE 62 n 61 ILE 62 A ILE 63 n 62 ILE 63 A ILE 64 n 63 ILE 64 A LEU 65 n 64 LEU 65 A LEU 66 n 65 LEU 66 A ALA 67 n 66 ALA 67 A ASP 68 n 67 ASP 68 A LEU 69 n 68 LEU 69 A HIS 70 n 69 HIS 70 A ALA 71 n 70 ALA 71 A TYR 72 n 71 TYR 72 A LEU 73 n 72 LEU 73 A ASN 74 n 73 ASN 74 A GLN 75 n 74 GLN 75 A LYS 76 n 75 LYS 76 A GLY 77 n 76 GLY 77 A GLU 78 n 77 GLU 78 A LEU 79 n 78 LEU 79 A ASP 80 n 79 ASP 80 A GLU 81 n 80 GLU 81 A ILE 82 n 81 ILE 82 A ARG 83 n 82 ARG 83 A LYS 84 n 83 LYS 84 A ILE 85 n 84 ILE 85 A GLY 86 n 85 GLY 86 A ASP 87 n 86 ASP 87 A TYR 88 n 87 TYR 88 A ASN 89 n 88 ASN 89 A LYS 90 n 89 LYS 90 A LYS 91 n 90 LYS 91 A VAL 92 n 91 VAL 92 A PHE 93 n 92 PHE 93 A GLU 94 n 93 GLU 94 A ALA 95 n 94 ALA 95 A MET 96 n 95 MET 96 A GLY 97 n 96 GLY 97 A LEU 98 n 97 LEU 98 A LYS 99 n 98 LYS 99 A ALA 100 n 99 ALA 100 A LYS 101 n 100 LYS 101 A TYR 102 n 101 TYR 102 A VAL 103 n 102 VAL 103 A TYR 104 n 103 TYR 104 A GLY 105 n 104 GLY 105 A SER 106 n 105 SER 106 A PRO 107 n 106 PRO 107 A PHE 108 n 107 PHE 108 A GLN 109 n 108 GLN 109 A LEU 110 n 109 LEU 110 A ASP 111 n 110 ASP 111 A LYS 112 n 111 LYS 112 A ASP 113 n 112 ASP 113 A TYR 114 n 113 TYR 114 A THR 115 n 114 THR 115 A LEU 116 n 115 LEU 116 A ASN 117 n 116 ASN 117 A VAL 118 n 117 VAL 118 A TYR 119 n 118 TYR 119 A ARG 120 n 119 ARG 120 A LEU 121 n 120 LEU 121 A ALA 122 n 121 ALA 122 A LEU 123 n 122 LEU 123 A LYS 124 n 123 LYS 124 A THR 125 n 124 THR 125 A THR 126 n 125 THR 126 A LEU 127 n 126 LEU 127 A LYS 128 n 127 LYS 128 A ARG 129 n 128 ARG 129 A ALA 130 n 129 ALA 130 A ARG 131 n 130 ARG 131 A ARG 132 n 131 ARG 132 A SER 133 n 132 SER 133 A MET 134 n 133 MET 134 A GLU 135 n 134 GLU 135 A LEU 136 n 135 LEU 136 A ILE 137 n 136 ILE 137 A ALA 138 n 137 ALA 138 A ARG 139 n 138 ARG 139 A GLU 140 n 139 GLU 140 A ASP 141 n 140 ASP 141 A GLU 142 n 141 GLU 142 A ASN 143 n 142 ASN 143 A PRO 144 n 143 PRO 144 A LYS 145 n 144 LYS 145 A VAL 146 n 145 VAL 146 A ALA 147 n 146 ALA 147 A GLU 148 n 147 GLU 148 A VAL 149 n 148 VAL 149 A ILE 150 n 149 ILE 150 A TYR 151 n 150 TYR 151 A PRO 152 n 151 PRO 152 A ILE 153 n 152 ILE 153 A MET 154 n 153 MET 154 A GLN 155 n 154 GLN 155 A VAL 156 n 155 VAL 156 A ASN 157 n 156 ASN 157 A THR 158 n 157 THR 158 A SER 159 n 158 SER 159 A HIS 160 n 159 HIS 160 A ARG 161 n 160 ARG 161 A LEU 162 n 161 LEU 162 A GLY 163 n 162 GLY 163 A VAL 164 n 163 VAL 164 A ASP 165 n 164 ASP 165 A VAL 166 n 165 VAL 166 A ALA 167 n 166 ALA 167 A VAL 168 n 167 VAL 168 A GLY 169 n 168 GLY 169 A GLY 170 n 169 GLY 170 A MET 171 n 170 MET 171 A GLU 172 n 171 GLU 172 A GLN 173 n 172 GLN 173 A ARG 174 n 173 ARG 174 A LYS 175 n 174 LYS 175 A ILE 176 n 175 ILE 176 A HIS 177 n 176 HIS 177 A MET 178 n 177 MET 178 A LEU 179 n 178 LEU 179 A ALA 180 n 179 ALA 180 A ARG 181 n 180 ARG 181 A GLU 182 n 181 GLU 182 A LEU 183 n 182 LEU 183 A LEU 184 n 183 LEU 184 A PRO 185 n 184 PRO 185 A LYS 186 n 185 LYS 186 A LYS 187 n 186 LYS 187 A VAL 188 n 187 VAL 188 A VAL 189 n 188 VAL 189 A MET 190 n 189 MET 190 A ILE 191 n 190 ILE 191 A HIS 192 n 191 HIS 192 A ASN 193 n 192 ASN 193 A PRO 194 n 193 PRO 194 A VAL 195 n 194 VAL 195 A LEU 196 n 195 LEU 196 A THR 197 n 196 THR 197 A GLY 198 n 197 GLY 198 A LEU 199 n 198 LEU 199 A ASP 200 n 199 ASP 200 A GLY 201 n 200 GLY 201 A GLU 202 n 201 GLU 202 A GLY 203 n 202 GLY 203 A LYS 204 n 203 LYS 204 A MET 205 n 204 MET 205 A SER 206 n 205 SER 206 A SER 207 n 206 SER 207 A SER 208 n 207 SER 208 A LYS 209 n 208 LYS 209 A GLY 210 n 209 GLY 210 A ASN 211 n 210 ASN 211 A PHE 212 n 211 PHE 212 A ILE 213 n 212 ILE 213 A ALA 214 n 213 ALA 214 A VAL 215 n 214 VAL 215 A ASP 216 n 215 ASP 216 A ASP 217 n 216 ASP 217 A SER 218 n 217 SER 218 A PRO 219 n 218 PRO 219 A GLU 220 n 219 GLU 220 A GLU 221 n 220 GLU 221 A ILE 222 n 221 ILE 222 A ARG 223 n 222 ARG 223 A ALA 224 n 223 ALA 224 A LYS 225 n 224 LYS 225 A ILE 226 n 225 ILE 226 A LYS 227 n 226 LYS 227 A LYS 228 n 227 LYS 228 A ALA 229 n 228 ALA 229 A TYR 230 n 229 TYR 230 A CYS 231 n 230 CYS 231 A PRO 232 n 231 PRO 232 A ALA 233 n 232 ALA 233 A GLY 234 n 233 GLY 234 A VAL 235 n 234 VAL 235 A VAL 236 n 235 VAL 236 A GLU 237 n 236 GLU 237 A GLY 238 n 237 GLY 238 A ASN 239 n 238 ASN 239 A PRO 240 n 239 PRO 240 A ILE 241 n 240 ILE 241 A MET 242 n 241 MET 242 A GLU 243 n 242 GLU 243 A ILE 244 n 243 ILE 244 A ALA 245 n 244 ALA 245 A LYS 246 n 245 LYS 246 A TYR 247 n 246 TYR 247 A PHE 248 n 247 PHE 248 A LEU 249 n 248 LEU 249 A GLU 250 n 249 GLU 250 A TYR 251 n 250 TYR 251 A PRO 252 n 251 PRO 252 A LEU 253 n 252 LEU 253 A THR 254 n 253 THR 254 A ILE 255 n 254 ILE 255 A LYS 256 n 255 LYS 256 A ARG 257 n 256 ARG 257 A PRO 258 n 257 PRO 258 A GLU 259 n 258 GLU 259 A LYS 260 n 259 LYS 260 A PHE 261 n 260 PHE 261 A GLY 262 n 261 GLY 262 A GLY 263 n 262 GLY 263 A ASP 264 n 263 ASP 264 A LEU 265 n 264 LEU 265 A THR 266 n 265 THR 266 A VAL 267 n 266 VAL 267 A ASN 268 n 267 ASN 268 A SER 269 n 268 SER 269 A TYR 270 n 269 TYR 270 A GLU 271 n 270 GLU 271 A GLU 272 n 271 GLU 272 A LEU 273 n 272 LEU 273 A GLU 274 n 273 GLU 274 A SER 275 n 274 SER 275 A LEU 276 n 275 LEU 276 A PHE 277 n 276 PHE 277 A LYS 278 n 277 LYS 278 A ASN 279 n 278 ASN 279 A LYS 280 n 279 LYS 280 A GLU 281 n 280 GLU 281 A LEU 282 n 281 LEU 282 A HIS 283 n 282 HIS 283 A PRO 284 n 283 PRO 284 A MET 285 n 284 MET 285 A ASP 286 n 285 ASP 286 A LEU 287 n 286 LEU 287 A LYS 288 n 287 LYS 288 A ASN 289 n 288 ASN 289 A ALA 290 n 289 ALA 290 A VAL 291 n 290 VAL 291 A ALA 292 n 291 ALA 292 A GLU 293 n 292 GLU 293 A GLU 294 n 293 GLU 294 A LEU 295 n 294 LEU 295 A ILE 296 n 295 ILE 296 A LYS 297 n 296 LYS 297 A ILE 298 n 297 ILE 298 A LEU 299 n 298 LEU 299 A GLU 300 n 299 GLU 300 A PRO 301 n 300 PRO 301 A ILE 302 n 301 ILE 302 A ARG 303 n 302 ARG 303 A LYS 304 n 303 LYS 304 A ARG 305 n 304 ARG 305 A LEU 306 n 305 LEU 306 A LEU 307 n 306 LEU 307 A author_and_software_defined_assembly PISA,PQS 2 dimeric 2740 -28 27120 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 1_555 x,y,z identity operation 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 7_556 y,x,-z+1 crystal symmetry operation 0.0000000000 0.0000000000 71.4660000000 A N GLU 13 A N GLU 12 A O HIS 192 A O HIS 191 A O VAL 189 A O VAL 188 A N ALA 167 A N ALA 166 A O VAL 168 A O VAL 167 A N GLY 32 A N GLY 31 A N LYS 29 A N LYS 28 A O ASP 61 A O ASP 60 A N ILE 64 A N ILE 63 A O LYS 101 A O LYS 100 A N LEU 253 A N LEU 252 A O VAL 267 A O VAL 266 1 A HOH 339 C HOH 1 A ILE 15 -67.38 94.04 1 A SER 16 85.81 99.18 1 A PRO 144 -39.81 123.98 1 A CYS 231 -169.42 71.40 1 A LYS 280 48.94 23.33 0.27 0.21 0.22 0.217 2.50 71.8 660 13459 13361 random 1 2.0 MOLECULAR REPLACEMENT PDB Entry: IJ1U Engh & Huber 2.50 71.8 132 2602 20 0 2450 1.25 0.0065 2.5 71.8 2HGZ 13459 13361 2.0 2.0 1 99.3 0.268 2.50 2.59 1 99.9 phasing AMoRE refinement REFMAC 5 data reduction HKL-2000 data scaling HKL-2000 Crystal structure of a p-benzoyl-L-phenylalanyl-tRNA synthetase 1 N N 2 N N 3 N N The protein is a monomer A ASP 2 A ASP 1 HELX_P A ARG 9 A ARG 8 1 1 8 A SER 16 A SER 15 HELX_P A LYS 26 A LYS 25 1 2 11 A HIS 42 A HIS 41 HELX_P A ALA 58 A ALA 57 1 3 17 A ALA 67 A ALA 66 HELX_P A ASN 74 A ASN 73 1 4 8 A GLU 78 A GLU 77 HELX_P A MET 96 A MET 95 1 5 19 A GLY 105 A GLY 104 HELX_P A LEU 110 A LEU 109 1 6 6 A ASP 111 A ASP 110 HELX_P A LEU 123 A LEU 122 1 7 13 A THR 126 A THR 125 HELX_P A MET 134 A MET 133 1 8 9 A VAL 146 A VAL 145 HELX_P A GLY 163 A GLY 162 1 9 18 A GLN 173 A GLN 172 HELX_P A LEU 184 A LEU 183 1 10 12 A SER 218 A SER 217 HELX_P A ALA 229 A ALA 228 1 11 12 A ASN 239 A ASN 238 HELX_P A PHE 248 A PHE 247 1 12 10 A PRO 258 A PRO 257 HELX_P A GLY 262 A GLY 261 5 13 5 A SER 269 A SER 268 HELX_P A ASN 279 A ASN 278 1 14 11 A HIS 283 A HIS 282 HELX_P A LEU 307 A LEU 306 1 15 25 LIGASE p-benzoyl-L-phenylalanine, Unnatural amino acid, aminoacyl-tRNA synthetase, LIGASE A TYR 251 A TYR 250 1 A PRO 252 A PRO 251 0.03 SYY_METJA UNP 1 2 Q57834 DEFEMIKRNTSEIISEEELREVLKKDEKSAYIGFEPSGKIHLGHYLQIKKMIDLQNAGFDIIILLADLHAYLNQKGELDE IRKIGDYNKKVFEAMGLKAKYVYGSEFQLDKDYTLNVYRLALKTTLKRARRSMELIAREDENPKVAEVIYPIMQVNDIHY LGVDVAVGGMEQRKIHMLARELLPKKVVCIHNPVLTGLDGEGKMSSSKGNFIAVDDSPEEIRAKIKKAYCPAGVVEGNPI MEIAKYFLEYPLTIKRPEKFGGDLTVNSYEELESLFKNKELHPMDLKNAVAEELIKILEPIRKRL 2 306 2HGZ 2 306 Q57834 A 1 1 305 1 TYR engineered mutation GLY 32 2HGZ A Q57834 UNP 32 31 1 GLU SEE REMARK 999 PRO 107 2HGZ A Q57834 UNP 107 106 1 ASP engineered mutation THR 158 2HGZ A Q57834 UNP 158 157 1 ILE engineered mutation SER 159 2HGZ A Q57834 UNP 159 158 1 TYR SEE REMARK 999 ARG 161 2HGZ A Q57834 UNP 161 160 1 CYS SEE REMARK 999 MET 190 2HGZ A Q57834 UNP 190 189 1 cloning artifact LEU 307 2HGZ A Q57834 UNP 306 6 2 anti-parallel parallel parallel parallel parallel anti-parallel A GLU 13 A GLU 12 A ILE 15 A ILE 14 A VAL 189 A VAL 188 A ASN 193 A ASN 192 A VAL 166 A VAL 165 A GLY 170 A GLY 169 A LYS 29 A LYS 28 A PHE 35 A PHE 34 A PHE 60 A PHE 59 A LEU 66 A LEU 65 A LYS 101 A LYS 100 A TYR 104 A TYR 103 A LEU 253 A LEU 252 A ILE 255 A ILE 254 A LEU 265 A LEU 264 A VAL 267 A VAL 266 BINDING SITE FOR RESIDUE PBF A 308 A PBF 308 Software 15 A GLY 32 A GLY 31 15 1_555 A ILE 33 A ILE 32 15 1_555 A GLY 34 A GLY 33 15 1_555 A GLU 36 A GLU 35 15 1_555 A LEU 65 A LEU 64 15 1_555 A ALA 67 A ALA 66 15 1_555 A HIS 70 A HIS 69 15 1_555 A ILE 137 A ILE 136 15 1_555 A TYR 151 A TYR 150 15 1_555 A GLN 155 A GLN 154 15 1_555 A THR 158 A THR 157 15 1_555 A SER 159 A SER 158 15 1_555 A LEU 162 A LEU 161 15 1_555 A GLN 173 A GLN 172 15 1_555 A HOH 437 C HOH 15 1_555 96 P 43 21 2